Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1161470 | ACJ85758.1 | 70.238 | 84 | 20 | 2 | 11 | 94 | 1 | 79 | 5.52e-25 | 103 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1161470 | B7FLX5 | 70.238 | 84 | 20 | 2 | 11 | 94 | 1 | 79 | 2.64e-25 | 103 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0763400 | Msa1161470 | 0.818920 | 1.523855e-52 | -8.615850e-47 |
Msa0387250 | Msa1161470 | 0.805183 | 1.509693e-49 | -8.615850e-47 |
Msa0570640 | Msa1161470 | 0.800191 | 1.618228e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1161470 | MtrunA17_Chr7g0255191 | 70.238 | 84 | 20 | 2 | 11 | 94 | 1 | 79 | 3.44e-28 | 106 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 18 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTATTTCGATTGTGAGGC+AGG | 0.378148 | 7_4:+51680930 | None:intergenic |
ATTTCTTGAATTTGATCTAC+AGG | 0.440894 | 7_4:-51680896 | Msa1161470:CDS |
TGCTGGAGCTGGAGGATTGT+GGG | 0.444109 | 7_4:-51680863 | Msa1161470:CDS |
GAATGTTGTGAAGAGAGAAA+TGG | 0.456469 | 7_4:-51681441 | Msa1161470:CDS |
GAGATCAATCATGCTGGAGC+TGG | 0.463454 | 7_4:-51680874 | Msa1161470:CDS |
GTTAATTGTGGTTTGTCTTG+TGG | 0.472056 | 7_4:-51681378 | Msa1161470:CDS |
AATGTTGTGAAGAGAGAAAT+GGG | 0.485564 | 7_4:-51681440 | Msa1161470:CDS |
GAGAGAAATGGGTTGTTCAA+AGG | 0.494479 | 7_4:-51681429 | Msa1161470:CDS |
GTGCATGTTTGTATTTGAGT+TGG | 0.504300 | 7_4:-51680953 | Msa1161470:CDS |
ATGCTTTGATGTGCAAGTGC+AGG | 0.534577 | 7_4:-51681351 | Msa1161470:CDS |
ACCTCTGTTGCTCACAAGCT+CGG | 0.539869 | 7_4:+51680840 | None:intergenic |
ATCAATCATGCTGGAGCTGG+AGG | 0.547119 | 7_4:-51680871 | Msa1161470:CDS |
ATGCTGGAGCTGGAGGATTG+TGG | 0.558911 | 7_4:-51680864 | Msa1161470:CDS |
TATGCTGCAACTGTTAATTG+TGG | 0.563050 | 7_4:-51681390 | Msa1161470:CDS |
CTACAGGAGATCAATCATGC+TGG | 0.591320 | 7_4:-51680880 | Msa1161470:CDS |
GCCGAGCTTGTGAGCAACAG+AGG | 0.602025 | 7_4:-51680841 | Msa1161470:CDS |
TTTCTGCTATTTCGATTGTG+AGG | 0.603002 | 7_4:+51680926 | None:intergenic |
GGCTGATTTAAATGCAACAC+TGG | 0.605166 | 7_4:-51681330 | Msa1161470:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTCTTTAATATAATAACT+TGG | + | chr7_4:51681708-51681727 | None:intergenic | 10.0% |
!! | AAGTTATTATATTAAAGAAA+AGG | - | chr7_4:51681707-51681726 | Msa1161470:intron | 10.0% |
!!! | AGAAAATTAGATTTTATTAT+AGG | - | chr7_4:51681802-51681821 | Msa1161470:intron | 10.0% |
!!! | TTTTCTTTAATATAATAACT+TGG | + | chr7_4:51681708-51681727 | None:intergenic | 10.0% |
!! | AAGTTATTATATTAAAGAAA+AGG | - | chr7_4:51681707-51681726 | Msa1161470:intron | 10.0% |
!!! | AGAAAATTAGATTTTATTAT+AGG | - | chr7_4:51681802-51681821 | Msa1161470:intron | 10.0% |
!! | AGTATGTATATATTATTATG+AGG | + | chr7_4:51681028-51681047 | None:intergenic | 15.0% |
!! | AAAATAATTATCAAGTCAAA+GGG | + | chr7_4:51681058-51681077 | None:intergenic | 15.0% |
!! | AAAAATAATTATCAAGTCAA+AGG | + | chr7_4:51681059-51681078 | None:intergenic | 15.0% |
!!! | TATGATTCATTTTTCTTATA+TGG | - | chr7_4:51681078-51681097 | Msa1161470:intron | 15.0% |
!! | AGTATGTATATATTATTATG+AGG | + | chr7_4:51681028-51681047 | None:intergenic | 15.0% |
!! | AAAATAATTATCAAGTCAAA+GGG | + | chr7_4:51681058-51681077 | None:intergenic | 15.0% |
!! | AAAAATAATTATCAAGTCAA+AGG | + | chr7_4:51681059-51681078 | None:intergenic | 15.0% |
!!! | TATGATTCATTTTTCTTATA+TGG | - | chr7_4:51681078-51681097 | Msa1161470:intron | 15.0% |
!! | AATAGAACATAGCAAAAAAA+AGG | - | chr7_4:51681156-51681175 | Msa1161470:intron | 20.0% |
!! | CATATTGTAACATTATTAAG+CGG | - | chr7_4:51681195-51681214 | Msa1161470:intron | 20.0% |
!! | AGAATACTAAACAAGTTAAA+AGG | + | chr7_4:51681272-51681291 | None:intergenic | 20.0% |
!! | TCCTAAGTAGATTAAAATAA+AGG | - | chr7_4:51681611-51681630 | Msa1161470:intron | 20.0% |
!!! | TCCTTTATTTTAATCTACTT+AGG | + | chr7_4:51681615-51681634 | None:intergenic | 20.0% |
!! | AATAGAACATAGCAAAAAAA+AGG | - | chr7_4:51681156-51681175 | Msa1161470:intron | 20.0% |
!! | CATATTGTAACATTATTAAG+CGG | - | chr7_4:51681195-51681214 | Msa1161470:intron | 20.0% |
!! | AGAATACTAAACAAGTTAAA+AGG | + | chr7_4:51681272-51681291 | None:intergenic | 20.0% |
!! | TCCTAAGTAGATTAAAATAA+AGG | - | chr7_4:51681611-51681630 | Msa1161470:intron | 20.0% |
!!! | TCCTTTATTTTAATCTACTT+AGG | + | chr7_4:51681615-51681634 | None:intergenic | 20.0% |
!!! | GTTTAAGATTTTCTTGCTTT+GGG | + | chr7_4:51680832-51680851 | None:intergenic | 25.0% |
! | GTTGAATTTATAGAGAAACA+AGG | + | chr7_4:51680974-51680993 | None:intergenic | 25.0% |
!!! | TCTTTTTGGAATATTCTTTG+AGG | - | chr7_4:51681515-51681534 | Msa1161470:intron | 25.0% |
!!! | ACAGATATTGTTGATGATAT+GGG | - | chr7_4:51681568-51681587 | Msa1161470:intron | 25.0% |
! | ATTTCTTGAATTTGATCTAC+AGG | - | chr7_4:51681883-51681902 | Msa1161470:intron | 25.0% |
!!! | GTTTAAGATTTTCTTGCTTT+GGG | + | chr7_4:51680832-51680851 | None:intergenic | 25.0% |
! | GTTGAATTTATAGAGAAACA+AGG | + | chr7_4:51680974-51680993 | None:intergenic | 25.0% |
!!! | TCTTTTTGGAATATTCTTTG+AGG | - | chr7_4:51681515-51681534 | Msa1161470:intron | 25.0% |
!!! | ACAGATATTGTTGATGATAT+GGG | - | chr7_4:51681568-51681587 | Msa1161470:intron | 25.0% |
! | ATTTCTTGAATTTGATCTAC+AGG | - | chr7_4:51681883-51681902 | Msa1161470:intron | 25.0% |
!! | GGTTTAAGATTTTCTTGCTT+TGG | + | chr7_4:51680833-51680852 | None:intergenic | 30.0% |
AAGTGAGTTATGAATGTGTT+TGG | + | chr7_4:51680854-51680873 | None:intergenic | 30.0% | |
TTGGTCTGAATAATGAATGA+AGG | + | chr7_4:51680945-51680964 | None:intergenic | 30.0% | |
TAGAGAAACAAGGATTGAAT+TGG | + | chr7_4:51680964-51680983 | None:intergenic | 30.0% | |
TCAGTCACAAGATATGTAAA+AGG | + | chr7_4:51681123-51681142 | None:intergenic | 30.0% | |
! | ACATAGCAAAAAAAAGGTGT+CGG | - | chr7_4:51681162-51681181 | Msa1161470:intron | 30.0% |
ATTGTAACATTATTAAGCGG+TGG | - | chr7_4:51681198-51681217 | Msa1161470:intron | 30.0% | |
!! | CTAGTGTTAGTTAACTTGTT+TGG | - | chr7_4:51681235-51681254 | Msa1161470:intron | 30.0% |
AATGTTGTGAAGAGAGAAAT+GGG | - | chr7_4:51681339-51681358 | Msa1161470:CDS | 30.0% | |
AATATTCCAAAAAGAGTCTC+CGG | + | chr7_4:51681510-51681529 | None:intergenic | 30.0% | |
!! | CACAGATATTGTTGATGATA+TGG | - | chr7_4:51681567-51681586 | Msa1161470:intron | 30.0% |
AGTACATAAGACTATAAGAC+TGG | - | chr7_4:51681639-51681658 | Msa1161470:intron | 30.0% | |
ATTATCGTCTATTGCATTTG+TGG | - | chr7_4:51681739-51681758 | Msa1161470:intron | 30.0% | |
TGAATGAACTACATAGAACT+TGG | - | chr7_4:51681773-51681792 | Msa1161470:intron | 30.0% | |
!! | GGTTTAAGATTTTCTTGCTT+TGG | + | chr7_4:51680833-51680852 | None:intergenic | 30.0% |
AAGTGAGTTATGAATGTGTT+TGG | + | chr7_4:51680854-51680873 | None:intergenic | 30.0% | |
TTGGTCTGAATAATGAATGA+AGG | + | chr7_4:51680945-51680964 | None:intergenic | 30.0% | |
TAGAGAAACAAGGATTGAAT+TGG | + | chr7_4:51680964-51680983 | None:intergenic | 30.0% | |
TCAGTCACAAGATATGTAAA+AGG | + | chr7_4:51681123-51681142 | None:intergenic | 30.0% | |
! | ACATAGCAAAAAAAAGGTGT+CGG | - | chr7_4:51681162-51681181 | Msa1161470:intron | 30.0% |
ATTGTAACATTATTAAGCGG+TGG | - | chr7_4:51681198-51681217 | Msa1161470:intron | 30.0% | |
!! | CTAGTGTTAGTTAACTTGTT+TGG | - | chr7_4:51681235-51681254 | Msa1161470:intron | 30.0% |
AATGTTGTGAAGAGAGAAAT+GGG | - | chr7_4:51681339-51681358 | Msa1161470:CDS | 30.0% | |
AATATTCCAAAAAGAGTCTC+CGG | + | chr7_4:51681510-51681529 | None:intergenic | 30.0% | |
!! | CACAGATATTGTTGATGATA+TGG | - | chr7_4:51681567-51681586 | Msa1161470:intron | 30.0% |
AGTACATAAGACTATAAGAC+TGG | - | chr7_4:51681639-51681658 | Msa1161470:intron | 30.0% | |
ATTATCGTCTATTGCATTTG+TGG | - | chr7_4:51681739-51681758 | Msa1161470:intron | 30.0% | |
TGAATGAACTACATAGAACT+TGG | - | chr7_4:51681773-51681792 | Msa1161470:intron | 30.0% | |
AGTGAAGATAGAGTGATGTT+GGG | + | chr7_4:51680919-51680938 | None:intergenic | 35.0% | |
AAGTGAAGATAGAGTGATGT+TGG | + | chr7_4:51680920-51680939 | None:intergenic | 35.0% | |
GAATGTTGTGAAGAGAGAAA+TGG | - | chr7_4:51681338-51681357 | Msa1161470:CDS | 35.0% | |
TATGCTGCAACTGTTAATTG+TGG | - | chr7_4:51681389-51681408 | Msa1161470:CDS | 35.0% | |
! | GTTAATTGTGGTTTGTCTTG+TGG | - | chr7_4:51681401-51681420 | Msa1161470:CDS | 35.0% |
TTAATCTACTTAGGATGTCG+CGG | + | chr7_4:51681606-51681625 | None:intergenic | 35.0% | |
ACATAAGACTATAAGACTGG+AGG | - | chr7_4:51681642-51681661 | Msa1161470:intron | 35.0% | |
CATAAGACTATAAGACTGGA+GGG | - | chr7_4:51681643-51681662 | Msa1161470:intron | 35.0% | |
AACCATGTAATAACTGAGTC+AGG | + | chr7_4:51681677-51681696 | None:intergenic | 35.0% | |
GTGCATGTTTGTATTTGAGT+TGG | - | chr7_4:51681826-51681845 | Msa1161470:intron | 35.0% | |
!! | TTTCTGCTATTTCGATTGTG+AGG | + | chr7_4:51681856-51681875 | None:intergenic | 35.0% |
AGTGAAGATAGAGTGATGTT+GGG | + | chr7_4:51680919-51680938 | None:intergenic | 35.0% | |
AAGTGAAGATAGAGTGATGT+TGG | + | chr7_4:51680920-51680939 | None:intergenic | 35.0% | |
GAATGTTGTGAAGAGAGAAA+TGG | - | chr7_4:51681338-51681357 | Msa1161470:CDS | 35.0% | |
TATGCTGCAACTGTTAATTG+TGG | - | chr7_4:51681389-51681408 | Msa1161470:CDS | 35.0% | |
! | GTTAATTGTGGTTTGTCTTG+TGG | - | chr7_4:51681401-51681420 | Msa1161470:CDS | 35.0% |
TTAATCTACTTAGGATGTCG+CGG | + | chr7_4:51681606-51681625 | None:intergenic | 35.0% | |
ACATAAGACTATAAGACTGG+AGG | - | chr7_4:51681642-51681661 | Msa1161470:intron | 35.0% | |
CATAAGACTATAAGACTGGA+GGG | - | chr7_4:51681643-51681662 | Msa1161470:intron | 35.0% | |
AACCATGTAATAACTGAGTC+AGG | + | chr7_4:51681677-51681696 | None:intergenic | 35.0% | |
GTGCATGTTTGTATTTGAGT+TGG | - | chr7_4:51681826-51681845 | Msa1161470:intron | 35.0% | |
!! | TTTCTGCTATTTCGATTGTG+AGG | + | chr7_4:51681856-51681875 | None:intergenic | 35.0% |
!! | TTGCTTTGGGTTGTGTTTGT+GGG | + | chr7_4:51680819-51680838 | None:intergenic | 40.0% |
! | TGGATTTGGGTTTGCTTCTA+CGG | + | chr7_4:51680894-51680913 | None:intergenic | 40.0% |
GTGATGTTGGGTTTGGATTT+GGG | + | chr7_4:51680907-51680926 | None:intergenic | 40.0% | |
AGTGATGTTGGGTTTGGATT+TGG | + | chr7_4:51680908-51680927 | None:intergenic | 40.0% | |
AGATAGAGTGATGTTGGGTT+TGG | + | chr7_4:51680914-51680933 | None:intergenic | 40.0% | |
GAGTGAGTGAGTGATGAATT+TGG | + | chr7_4:51680996-51681015 | None:intergenic | 40.0% | |
!! | GAGAGAAATGGGTTGTTCAA+AGG | - | chr7_4:51681350-51681369 | Msa1161470:CDS | 40.0% |
! | GGCTGATTTAAATGCAACAC+TGG | - | chr7_4:51681449-51681468 | Msa1161470:CDS | 40.0% |
! | TTGATGATATGGGCTGTAGA+AGG | - | chr7_4:51681578-51681597 | Msa1161470:intron | 40.0% |
AGCCTGACTCAGTTATTACA+TGG | - | chr7_4:51681672-51681691 | Msa1161470:intron | 40.0% | |
!! | TTGCTTTGGGTTGTGTTTGT+GGG | + | chr7_4:51680819-51680838 | None:intergenic | 40.0% |
! | TGGATTTGGGTTTGCTTCTA+CGG | + | chr7_4:51680894-51680913 | None:intergenic | 40.0% |
GTGATGTTGGGTTTGGATTT+GGG | + | chr7_4:51680907-51680926 | None:intergenic | 40.0% | |
AGTGATGTTGGGTTTGGATT+TGG | + | chr7_4:51680908-51680927 | None:intergenic | 40.0% | |
AGATAGAGTGATGTTGGGTT+TGG | + | chr7_4:51680914-51680933 | None:intergenic | 40.0% | |
GAGTGAGTGAGTGATGAATT+TGG | + | chr7_4:51680996-51681015 | None:intergenic | 40.0% | |
!! | GAGAGAAATGGGTTGTTCAA+AGG | - | chr7_4:51681350-51681369 | Msa1161470:CDS | 40.0% |
! | GGCTGATTTAAATGCAACAC+TGG | - | chr7_4:51681449-51681468 | Msa1161470:CDS | 40.0% |
! | TTGATGATATGGGCTGTAGA+AGG | - | chr7_4:51681578-51681597 | Msa1161470:intron | 40.0% |
AGCCTGACTCAGTTATTACA+TGG | - | chr7_4:51681672-51681691 | Msa1161470:intron | 40.0% | |
!! | CTTGCTTTGGGTTGTGTTTG+TGG | + | chr7_4:51680820-51680839 | None:intergenic | 45.0% |
! | TTTGGGTTTGCTTCTACGGT+TGG | + | chr7_4:51680890-51680909 | None:intergenic | 45.0% |
ATGCTTTGATGTGCAAGTGC+AGG | - | chr7_4:51681428-51681447 | Msa1161470:CDS | 45.0% | |
ACTGGTTGTAGATGCTTCTC+AGG | - | chr7_4:51681467-51681486 | Msa1161470:intron | 45.0% | |
! | CGAATACCGGAGACTCTTTT+TGG | - | chr7_4:51681501-51681520 | Msa1161470:intron | 45.0% |
!! | TGCTATTTCGATTGTGAGGC+AGG | + | chr7_4:51681852-51681871 | None:intergenic | 45.0% |
CTACAGGAGATCAATCATGC+TGG | - | chr7_4:51681899-51681918 | Msa1161470:intron | 45.0% | |
!! | CTTGCTTTGGGTTGTGTTTG+TGG | + | chr7_4:51680820-51680839 | None:intergenic | 45.0% |
! | TTTGGGTTTGCTTCTACGGT+TGG | + | chr7_4:51680890-51680909 | None:intergenic | 45.0% |
ATGCTTTGATGTGCAAGTGC+AGG | - | chr7_4:51681428-51681447 | Msa1161470:CDS | 45.0% | |
ACTGGTTGTAGATGCTTCTC+AGG | - | chr7_4:51681467-51681486 | Msa1161470:intron | 45.0% | |
! | CGAATACCGGAGACTCTTTT+TGG | - | chr7_4:51681501-51681520 | Msa1161470:intron | 45.0% |
!! | TGCTATTTCGATTGTGAGGC+AGG | + | chr7_4:51681852-51681871 | None:intergenic | 45.0% |
CTACAGGAGATCAATCATGC+TGG | - | chr7_4:51681899-51681918 | Msa1161470:intron | 45.0% | |
GTAGATGCTTCTCAGGCATC+TGG | - | chr7_4:51681474-51681493 | Msa1161470:intron | 50.0% | |
GGCATCTGGAAGACGAATAC+CGG | - | chr7_4:51681488-51681507 | Msa1161470:intron | 50.0% | |
GAGATCAATCATGCTGGAGC+TGG | - | chr7_4:51681905-51681924 | Msa1161470:intron | 50.0% | |
ATCAATCATGCTGGAGCTGG+AGG | - | chr7_4:51681908-51681927 | Msa1161470:intron | 50.0% | |
ACCTCTGTTGCTCACAAGCT+CGG | + | chr7_4:51681942-51681961 | None:intergenic | 50.0% | |
GTAGATGCTTCTCAGGCATC+TGG | - | chr7_4:51681474-51681493 | Msa1161470:intron | 50.0% | |
GGCATCTGGAAGACGAATAC+CGG | - | chr7_4:51681488-51681507 | Msa1161470:intron | 50.0% | |
GAGATCAATCATGCTGGAGC+TGG | - | chr7_4:51681905-51681924 | Msa1161470:intron | 50.0% | |
ATCAATCATGCTGGAGCTGG+AGG | - | chr7_4:51681908-51681927 | Msa1161470:intron | 50.0% | |
ACCTCTGTTGCTCACAAGCT+CGG | + | chr7_4:51681942-51681961 | None:intergenic | 50.0% | |
ATGCTGGAGCTGGAGGATTG+TGG | - | chr7_4:51681915-51681934 | Msa1161470:intron | 55.0% | |
TGCTGGAGCTGGAGGATTGT+GGG | - | chr7_4:51681916-51681935 | Msa1161470:intron | 55.0% | |
ATGCTGGAGCTGGAGGATTG+TGG | - | chr7_4:51681915-51681934 | Msa1161470:intron | 55.0% | |
TGCTGGAGCTGGAGGATTGT+GGG | - | chr7_4:51681916-51681935 | Msa1161470:intron | 55.0% | |
GCCGAGCTTGTGAGCAACAG+AGG | - | chr7_4:51681938-51681957 | Msa1161470:intron | 60.0% | |
GCCGAGCTTGTGAGCAACAG+AGG | - | chr7_4:51681938-51681957 | Msa1161470:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 51680810 | 51681991 | 51680810 | ID=Msa1161470;Name=Msa1161470 |
chr7_4 | mRNA | 51680810 | 51681991 | 51680810 | ID=Msa1161470-mRNA-1;Parent=Msa1161470;Name=Msa1161470-mRNA-1;_AED=0.63;_eAED=0.63;_QI=0|0|0|0.66|1|1|3|0|103 |
chr7_4 | exon | 51681988 | 51681991 | 51681988 | ID=Msa1161470-mRNA-1:exon:14695;Parent=Msa1161470-mRNA-1 |
chr7_4 | exon | 51681331 | 51681470 | 51681331 | ID=Msa1161470-mRNA-1:exon:14694;Parent=Msa1161470-mRNA-1 |
chr7_4 | exon | 51680810 | 51680977 | 51680810 | ID=Msa1161470-mRNA-1:exon:14693;Parent=Msa1161470-mRNA-1 |
chr7_4 | CDS | 51681988 | 51681991 | 51681988 | ID=Msa1161470-mRNA-1:cds;Parent=Msa1161470-mRNA-1 |
chr7_4 | CDS | 51681331 | 51681470 | 51681331 | ID=Msa1161470-mRNA-1:cds;Parent=Msa1161470-mRNA-1 |
chr7_4 | CDS | 51680810 | 51680977 | 51680810 | ID=Msa1161470-mRNA-1:cds;Parent=Msa1161470-mRNA-1 |
Gene Sequence |
Protein sequence |