AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162190 MtrunA17_Chr7g0258001 98.708 387 5 0 1 387 1 387 0.0 778
Msa1162190 MtrunA17_Chr1g0173711 78.295 387 83 1 1 387 1 386 0.0 609
Msa1162190 MtrunA17_Chr2g0328811 58.871 372 153 0 1 372 1 372 1.75e-170 481
Msa1162190 MtrunA17_Chr4g0034511 33.871 248 161 2 82 329 96 340 6.65e-47 164
Msa1162190 MtrunA17_Chr1g0154581 32.103 271 170 3 79 349 93 349 1.12e-42 153
Msa1162190 MtrunA17_Chr8g0388421 53.333 90 41 1 193 282 1 89 3.61e-30 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162190 AT3G57650.1 73.615 379 99 1 3 381 2 379 0.0 595
Msa1162190 AT1G51260.1 60.383 366 145 0 1 366 1 366 8.66e-173 487
Msa1162190 AT3G18850.5 33.198 247 155 4 83 324 68 309 3.65e-41 149
Msa1162190 AT3G18850.1 33.198 247 155 4 83 324 91 332 5.44e-41 149
Msa1162190 AT3G18850.4 33.198 247 155 4 83 324 91 332 5.44e-41 149
Msa1162190 AT3G18850.2 33.198 247 155 4 83 324 91 332 5.44e-41 149
Msa1162190 AT3G18850.3 33.198 247 155 4 83 324 91 332 5.44e-41 149
Msa1162190 AT1G75020.2 32.302 291 190 4 18 307 35 319 2.03e-40 147
Msa1162190 AT1G75020.1 32.302 291 190 4 18 307 35 319 2.03e-40 147
Msa1162190 AT3G18850.6 32.105 190 119 4 140 324 17 201 8.93e-26 104

Find 114 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCATCGTTAATTTCTTTC+AGG 0.126168 7_4:+52697104 Msa1162190:CDS
ATCCTATCTATGCATGATTT+TGG 0.173803 7_4:-52702522 None:intergenic
GCAACAGCTTCATCTGTTTC+TGG 0.186144 7_4:-52701773 None:intergenic
CATCAATATATGCAGGTAAT+TGG 0.195108 7_4:+52699241 Msa1162190:intron
TTTGGTTTGGCAGTTGTTAC+TGG 0.220896 7_4:+52702356 Msa1162190:CDS
TTATACTTCACCTTAGTTCT+AGG 0.221261 7_4:-52699641 None:intergenic
CTAGGAATCAAAACGTTTCT+AGG 0.226408 7_4:-52699623 None:intergenic
TACATAAGTCCTTTGGGATT+TGG 0.254093 7_4:-52696805 None:intergenic
ATCATGCATAGATAGGATTT+TGG 0.272536 7_4:+52702527 Msa1162190:three_prime_UTR
TTTGCAGGGGCTACCTTGGC+CGG 0.287311 7_4:-52702425 None:intergenic
GGCCTGCTCTTCTTCACTTC+TGG 0.287712 7_4:+52697081 Msa1162190:CDS
TACAATGCTAAGGCTCTTAC+AGG 0.293441 7_4:+52701277 Msa1162190:CDS
CTAACCGCAAGAGGCTTTAT+TGG 0.301836 7_4:-52702111 None:intergenic
TGGGGCTTTGTGGTTGTTGC+AGG 0.307070 7_4:+52702269 Msa1162190:CDS
AGTAAAGACTGTGCGAATTC+AGG 0.308065 7_4:-52702777 None:intergenic
AAACTTTGTATTGATAATCT+TGG 0.324793 7_4:+52702690 Msa1162190:three_prime_UTR
ACAAAGAGAGCCAGCCAAAA+TGG 0.331927 7_4:-52699527 None:intergenic
TGGAGCAGGTAGCTCTATCT+TGG 0.336467 7_4:+52702249 Msa1162190:intron
TATATTTCCAGTCAGGTATA+CGG 0.361628 7_4:+52699483 Msa1162190:intron
TGGCTGGCTCTCTTTGTAGA+AGG 0.367457 7_4:+52699533 Msa1162190:CDS
AACTTGTTTGGCTTATTGAT+TGG 0.370682 7_4:+52697824 Msa1162190:CDS
TGTTGTGGCTGGAACTTGTT+TGG 0.378658 7_4:+52697812 Msa1162190:CDS
CGGCTTTGCAGGGGCTACCT+TGG 0.380057 7_4:-52702429 None:intergenic
TGTAAGAGCCTTAGCATTGT+AGG 0.383761 7_4:-52701275 None:intergenic
AGAATCATACATAAGTCCTT+TGG 0.384982 7_4:-52696812 None:intergenic
ATCACAGAAGTGATATTGAT+TGG 0.392235 7_4:+52698469 Msa1162190:CDS
AGCTCTATCTTGGGGCTTTG+TGG 0.399085 7_4:+52702259 Msa1162190:CDS
GAATCATACATAAGTCCTTT+GGG 0.408621 7_4:-52696811 None:intergenic
TTGTTTGTCATTTATAGCCT+CGG 0.414289 7_4:-52702471 None:intergenic
TGATTGGTGGGCTGGAGTTA+AGG 0.416079 7_4:+52697840 Msa1162190:CDS
CAGGAATATGCAACCTCCAC+TGG 0.418356 7_4:+52699590 Msa1162190:CDS
GTAGGAGCAGGTGAACTCTT+GGG 0.419853 7_4:-52701257 None:intergenic
AGTGATATTGATTGGCTTGT+TGG 0.423156 7_4:+52698477 Msa1162190:CDS
GGAGCAGGTAGCTCTATCTT+GGG 0.431261 7_4:+52702250 Msa1162190:intron
AACCAAAATCATGCATAGAT+AGG 0.432783 7_4:+52702520 Msa1162190:three_prime_UTR
TGTCAAATTATTAGCTGCTC+AGG 0.434589 7_4:+52699571 Msa1162190:CDS
TTGTTTGGCTTATTGATTGG+TGG 0.438156 7_4:+52697827 Msa1162190:CDS
ATCAAAACGTTTCTAGGAAT+AGG 0.438739 7_4:-52699617 None:intergenic
TTGCAGGGGCTACCTTGGCC+GGG 0.439197 7_4:-52702424 None:intergenic
ATTTGTACAGAAGGATCAAC+CGG 0.447623 7_4:+52697776 Msa1162190:CDS
TGTAGGAGCAGGTGAACTCT+TGG 0.448570 7_4:-52701258 None:intergenic
TGGCTTATTGATTGGTGGGC+TGG 0.450389 7_4:+52697832 Msa1162190:CDS
TATTGATTGGCTTGTTGGAT+GGG 0.454656 7_4:+52698482 Msa1162190:CDS
GGTGGCAGAACTGTTGTGGC+TGG 0.463743 7_4:+52697801 Msa1162190:CDS
ATAGCAATGAAGACCATTGT+AGG 0.466450 7_4:-52702304 None:intergenic
TGTTTGGCTTATTGATTGGT+GGG 0.485633 7_4:+52697828 Msa1162190:CDS
CCTTGGCCCAACTTCTCTCC+AGG 0.488070 7_4:-52699294 None:intergenic
AGCCACTGTTATGTCGTAAA+CGG 0.489173 7_4:-52701231 None:intergenic
AACATGATCAAACAGCGTTC+GGG 0.490140 7_4:+52698770 Msa1162190:intron
GCTGCTGTTGTGGTTCCACT+AGG 0.490219 7_4:+52697060 Msa1162190:CDS
AAACAACGGAGTTTCCGAAA+TGG 0.491358 7_4:-52696992 None:intergenic
CGACAGAGAGAGGGCGGGCA+TGG 0.495219 7_4:+52697026 Msa1162190:exon
AAACAGCGTTCGGGTTGCCT+TGG 0.495910 7_4:+52698779 Msa1162190:intron
GGCCAGAAGTGAAGAAGAGC+AGG 0.498243 7_4:-52697083 None:intergenic
CCATCAAACTAAAAGTTTCG+CGG 0.502575 7_4:-52698258 None:intergenic
AAAGAGAAAGAGAAAGAGGG+AGG 0.505343 7_4:-52696959 None:intergenic
ATATTGATTGGCTTGTTGGA+TGG 0.507298 7_4:+52698481 Msa1162190:CDS
AAGAGAAAGAGAAAGAGGGA+GGG 0.510049 7_4:-52696958 None:intergenic
TTTCAGTGATCAAGAGCTGC+AGG 0.514777 7_4:+52702077 Msa1162190:CDS
AGCCTTAGCATTGTAGGAGC+AGG 0.515820 7_4:-52701269 None:intergenic
TATTGCAGCGGCTGCTGTTG+TGG 0.515967 7_4:+52697050 Msa1162190:CDS
GTATGTCTTCAATTCTTATG+TGG 0.516483 7_4:+52702625 Msa1162190:three_prime_UTR
CCTGGAGAGAAGTTGGGCCA+AGG 0.521879 7_4:+52699294 Msa1162190:CDS
AATATATGCAGGTAATTGGC+TGG 0.522015 7_4:+52699245 Msa1162190:intron
TAGAGATATATTTGTGGCCA+AGG 0.522172 7_4:+52701805 Msa1162190:CDS
TGTTTGTCATTTATAGCCTC+GGG 0.526030 7_4:-52702470 None:intergenic
TTCATTGCTATCATCATGGA+AGG 0.538570 7_4:+52702316 Msa1162190:CDS
GGTCTTCATTGCTATCATCA+TGG 0.551611 7_4:+52702312 Msa1162190:CDS
AGAGCCAGCCAAAATGGAAG+AGG 0.551853 7_4:-52699521 None:intergenic
GGAAACTCCGTTGTTTGTGT+CGG 0.555922 7_4:+52696999 Msa1162190:five_prime_UTR
AGAGCGTTCAAACCCGGCCA+AGG 0.559503 7_4:+52702412 Msa1162190:CDS
CAGAAGGATCAACCGGGTGG+TGG 0.569650 7_4:+52697783 Msa1162190:CDS
ACAATGCTAAGGCTCTTACA+GGG 0.571888 7_4:+52701278 Msa1162190:CDS
ACAGGCAGAGCGTTCAAACC+CGG 0.574054 7_4:+52702406 Msa1162190:CDS
TAGGAGCAGGTGAACTCTTG+GGG 0.575579 7_4:-52701256 None:intergenic
GGCGGGCATGGCTATTGCAG+CGG 0.575991 7_4:+52697038 Msa1162190:exon
CACCTGCTCCTACAATGCTA+AGG 0.582939 7_4:+52701267 Msa1162190:CDS
TGTCGAAGAATTTGTACAGA+AGG 0.588476 7_4:+52697767 Msa1162190:CDS
CTGTACAAATTCTTCGACAG+CGG 0.589374 7_4:-52697763 None:intergenic
GTGAAGAAGAGCAGGCCTAG+TGG 0.591773 7_4:-52697075 None:intergenic
GAAATCGTCAAAGTTTCTGC+CGG 0.597725 7_4:+52698823 Msa1162190:CDS
ACTGTTATGTCGTAAACGGC+AGG 0.607362 7_4:-52701227 None:intergenic
GGGTGGTGGCAGAACTGTTG+TGG 0.609128 7_4:+52697797 Msa1162190:CDS
ACAACAGTTCTGCCACCACC+CGG 0.612737 7_4:-52697795 None:intergenic
AGGAAGTATCTAACCGCAAG+AGG 0.613823 7_4:-52702120 None:intergenic
GAGCAGGTAGCTCTATCTTG+GGG 0.613961 7_4:+52702251 Msa1162190:intron
TGTCGGAGTACGACAGAGAG+AGG 0.615331 7_4:+52697016 Msa1162190:five_prime_UTR
TCTCAAGTTGAAGAAGCTGA+AGG 0.616528 7_4:+52696832 Msa1162190:five_prime_UTR
GAGTACGACAGAGAGAGGGC+GGG 0.626281 7_4:+52697021 Msa1162190:five_prime_UTR
CAATGCTAAGGCTCTTACAG+GGG 0.628628 7_4:+52701279 Msa1162190:CDS
AAACAAGGAGGAACAACCCG+AGG 0.629915 7_4:+52702454 Msa1162190:CDS
TTTACCTTTAAAATCTACCG+TGG 0.630728 7_4:+52702603 Msa1162190:three_prime_UTR
GTTAGACAAACATGTAGCTG+AGG 0.641749 7_4:+52702050 Msa1162190:CDS
GTGGTGTAGAGATATATTTG+TGG 0.645246 7_4:+52701799 Msa1162190:CDS
CCTGAAAGAAATTAACGATG+AGG 0.652923 7_4:-52697104 None:intergenic
TCGTACTCCGACACAAACAA+CGG 0.655953 7_4:-52697006 None:intergenic
AGGAATAGGCAATCCAGTGG+AGG 0.661011 7_4:-52699603 None:intergenic
GGAGTACGACAGAGAGAGGG+CGG 0.661546 7_4:+52697020 Msa1162190:five_prime_UTR
GTCGGAGTACGACAGAGAGA+GGG 0.679818 7_4:+52697017 Msa1162190:five_prime_UTR
GCAGTGTTAAGTTCCTACAA+TGG 0.685650 7_4:+52702291 Msa1162190:CDS
TCACTGCTAGAGTACTGCCA+AGG 0.686243 7_4:-52698796 None:intergenic
TCGACCAATAAAGCCTCTTG+CGG 0.688167 7_4:+52702107 Msa1162190:CDS
TCATTGCTATCATCATGGAA+GGG 0.691790 7_4:+52702317 Msa1162190:CDS
GATCGAAAACCAAATCCCAA+AGG 0.692748 7_4:+52696796 Msa1162190:five_prime_UTR
AGGTAATTGGCTGGTCAATG+TGG 0.693841 7_4:+52699254 Msa1162190:intron
CTTACAGGGGAAACGTTCAG+TGG 0.694618 7_4:+52701292 Msa1162190:CDS
TCTAGGAATAGGCAATCCAG+TGG 0.701158 7_4:-52699606 None:intergenic
GCTCCAGGTCGAAATATACA+CGG 0.702623 7_4:+52698234 Msa1162190:intron
ATTTCCAGTCAGGTATACGG+CGG 0.705719 7_4:+52699486 Msa1162190:intron
TAAGAATTGAAGACATACCA+CGG 0.708497 7_4:-52702620 None:intergenic
TGCCGTTTACGACATAACAG+TGG 0.715538 7_4:+52701229 Msa1162190:CDS
CAGATGAAGCTGTTGCTCAG+TGG 0.717060 7_4:+52701780 Msa1162190:CDS
TTTGTACAGAAGGATCAACC+GGG 0.728556 7_4:+52697777 Msa1162190:CDS
GTACAGAAGGATCAACCGGG+TGG 0.763265 7_4:+52697780 Msa1162190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATTATTTTATCTAAAAT+TGG + chr7_4:52697561-52697580 Msa1162190:intron 10.0%
!!! TTACTGATTTTTTATTTTTA+CGG + chr7_4:52699341-52699360 Msa1162190:intron 10.0%
!!! ATCTGAAATAAATAAATAAA+AGG - chr7_4:52700091-52700110 None:intergenic 10.0%
!! AAAAACATCTAAATAAAAAA+GGG - chr7_4:52702201-52702220 None:intergenic 10.0%
!! AAAAAACATCTAAATAAAAA+AGG - chr7_4:52702202-52702221 None:intergenic 10.0%
!! TAATTTGATATTATCATAAC+AGG + chr7_4:52698621-52698640 Msa1162190:intron 15.0%
!!! ATCTAGTGAATTTTTTATTT+TGG + chr7_4:52699055-52699074 Msa1162190:intron 15.0%
!!! TACTGATTTTTTATTTTTAC+GGG + chr7_4:52699342-52699361 Msa1162190:intron 15.0%
!!! AATTAAAGTATTATAACCTA+TGG + chr7_4:52700439-52700458 Msa1162190:intron 15.0%
!!! TTTTTTAATTAACTTTGGTT+GGG - chr7_4:52700569-52700588 None:intergenic 15.0%
!!! GTTTCTTTTTTAATTAACTT+TGG - chr7_4:52700574-52700593 None:intergenic 15.0%
!!! ATAAGTGATGTATTTTTATA+CGG + chr7_4:52701537-52701556 Msa1162190:intron 15.0%
!! CAAAACAATAACAAATAAAT+AGG - chr7_4:52702171-52702190 None:intergenic 15.0%
!! TTAACCTCTAAATCAATATT+GGG - chr7_4:52697422-52697441 None:intergenic 20.0%
!! TTTAACCTCTAAATCAATAT+TGG - chr7_4:52697423-52697442 None:intergenic 20.0%
!! TCTAACTTGAAGTTAAAAAT+TGG + chr7_4:52697477-52697496 Msa1162190:intron 20.0%
!!! GATAAAATAATGTAAGTTGA+AGG - chr7_4:52697555-52697574 None:intergenic 20.0%
!! TAAACAAATTCTAATTTCTC+CGG + chr7_4:52697867-52697886 Msa1162190:intron 20.0%
!! GATAATAATAAAAAGGATTC+CGG - chr7_4:52697889-52697908 None:intergenic 20.0%
!! AAGTGCAGATAATAATAAAA+AGG - chr7_4:52697896-52697915 None:intergenic 20.0%
!! GATTAATCTTATCTTTCATT+TGG + chr7_4:52698202-52698221 Msa1162190:intron 20.0%
!! TTAAATGATATATAAGCTAC+TGG - chr7_4:52698592-52698611 None:intergenic 20.0%
!! AAAAAATTCACTAGATACAA+CGG - chr7_4:52699051-52699070 None:intergenic 20.0%
!! TTATTAACTACGTATTATTC+TGG + chr7_4:52699147-52699166 Msa1162190:intron 20.0%
!!! TTATTTTCATCAATATATGC+AGG + chr7_4:52699234-52699253 Msa1162190:intron 20.0%
!! CAATACTAACATATTTAGAT+TGG - chr7_4:52699812-52699831 None:intergenic 20.0%
!! TAAATATGTTAGTATTGCTA+CGG + chr7_4:52699815-52699834 Msa1162190:intron 20.0%
!!! TCAGTTGAATTTGATTTTTT+AGG + chr7_4:52699975-52699994 Msa1162190:intron 20.0%
!!! CAGTTGAATTTGATTTTTTA+GGG + chr7_4:52699976-52699995 Msa1162190:intron 20.0%
!!! CTTTTTTAATTAACTTTGGT+TGG - chr7_4:52700570-52700589 None:intergenic 20.0%
!! ATAATGTAATTGTTCGTAAA+TGG + chr7_4:52700746-52700765 Msa1162190:intron 20.0%
!! ATTGCTATCCATATTAAAAA+TGG - chr7_4:52700974-52700993 None:intergenic 20.0%
!!! TTTTAATATGGATAGCAATT+AGG + chr7_4:52700975-52700994 Msa1162190:intron 20.0%
!! AATAAGATATCTTTCAATAC+AGG - chr7_4:52701050-52701069 None:intergenic 20.0%
!!! TCACATTTCTTCTTATTTAT+TGG + chr7_4:52701073-52701092 Msa1162190:intron 20.0%
!! CTTATTTATTGGATCATAAT+AGG + chr7_4:52701084-52701103 Msa1162190:intron 20.0%
!!! TTCTAAAACTTGATTTTGAT+TGG - chr7_4:52701322-52701341 None:intergenic 20.0%
!!! GTTTAGTTTTCAACATAATT+AGG + chr7_4:52702664-52702683 Msa1162190:three_prime_UTR 20.0%
!!! AAACTTTGTATTGATAATCT+TGG + chr7_4:52702690-52702709 Msa1162190:three_prime_UTR 20.0%
!! CTTTTTCTCATTTTCCATTT+CGG + chr7_4:52696978-52696997 Msa1162190:five_prime_UTR 25.0%
! TGATAGAAACAAAGTATGTT+TGG - chr7_4:52697175-52697194 None:intergenic 25.0%
! ATTTCAGATTTGAATCAGTT+GGG - chr7_4:52697287-52697306 None:intergenic 25.0%
!!! TTTACCCAATATTGATTTAG+AGG + chr7_4:52697415-52697434 Msa1162190:intron 25.0%
! ATCAATTCTACTCAAAAACA+TGG - chr7_4:52697457-52697476 None:intergenic 25.0%
!! TCAAGTTGTTTATCTAAACA+AGG + chr7_4:52697632-52697651 Msa1162190:intron 25.0%
! TTATCTAAACAAGGCTTAAT+TGG + chr7_4:52697641-52697660 Msa1162190:intron 25.0%
!!! CTCTTTTTTTATCTTGTCTT+AGG + chr7_4:52697717-52697736 Msa1162190:intron 25.0%
!!! CTTTTTAATTGATTTAGCTG+CGG + chr7_4:52697924-52697943 Msa1162190:intron 25.0%
!!! TAATGATTTTCTAGGAAAGA+TGG - chr7_4:52698096-52698115 None:intergenic 25.0%
! TAGCAGTTTATTTGTTCATT+TGG + chr7_4:52698180-52698199 Msa1162190:intron 25.0%
! GCAAGAAGAAAAAAATAAAG+AGG - chr7_4:52698330-52698349 None:intergenic 25.0%
! GACAAATTCAAAATAGAATC+TGG - chr7_4:52698420-52698439 None:intergenic 25.0%
!!! GATTCTATTTTGAATTTGTC+AGG + chr7_4:52698420-52698439 Msa1162190:intron 25.0%
! TATTATCATAACAGGACAAA+AGG + chr7_4:52698629-52698648 Msa1162190:intron 25.0%
! GGCTATTGTATAATAAGTTT+CGG + chr7_4:52698675-52698694 Msa1162190:intron 25.0%
! AAATCGCAGATAAATAACAT+AGG - chr7_4:52698731-52698750 None:intergenic 25.0%
!! CAACTTATCTAGTGAAATTT+TGG + chr7_4:52699080-52699099 Msa1162190:intron 25.0%
! TTACAGTTCTATAGTTATAC+TGG - chr7_4:52699186-52699205 None:intergenic 25.0%
! ACATATTTAGATTGGAACAA+TGG - chr7_4:52699804-52699823 None:intergenic 25.0%
! ATAAAGACACTAACATACAT+AGG + chr7_4:52699932-52699951 Msa1162190:intron 25.0%
! CAAAGTAACAAAATCTGTAA+GGG + chr7_4:52700497-52700516 Msa1162190:intron 25.0%
! GCTAGATTATAATCACTTTA+GGG - chr7_4:52700645-52700664 None:intergenic 25.0%
! TGCTAGATTATAATCACTTT+AGG - chr7_4:52700646-52700665 None:intergenic 25.0%
! AAAGTGATTATAATCTAGCA+AGG + chr7_4:52700646-52700665 Msa1162190:intron 25.0%
!! TTATAATCTAGCAAGGTTTT+TGG + chr7_4:52700653-52700672 Msa1162190:intron 25.0%
! TACGAACAATTACATTATTC+AGG - chr7_4:52700744-52700763 None:intergenic 25.0%
!!! TCACTCTTTTTTCTTTTTTC+AGG + chr7_4:52701166-52701185 Msa1162190:intron 25.0%
!!! CACTCTTTTTTCTTTTTTCA+GGG + chr7_4:52701167-52701186 Msa1162190:intron 25.0%
!!! ACTCTTTTTTCTTTTTTCAG+GGG + chr7_4:52701168-52701187 Msa1162190:intron 25.0%
! TGTCTGTACATGATAAAATA+CGG - chr7_4:52701381-52701400 None:intergenic 25.0%
! ATGTAGTGATTTCAAAATGA+GGG - chr7_4:52701602-52701621 None:intergenic 25.0%
! AATGTAGTGATTTCAAAATG+AGG - chr7_4:52701603-52701622 None:intergenic 25.0%
!! AAAAATATCTAAGGCGTTAA+AGG - chr7_4:52701660-52701679 None:intergenic 25.0%
! CTTCTCTTAACTATTAATTC+TGG + chr7_4:52701871-52701890 Msa1162190:intron 25.0%
!!! TATACCATTTTTTTTACCTC+CGG + chr7_4:52702011-52702030 Msa1162190:intron 25.0%
! TAAAGAGTTAAGACATATCA+AGG - chr7_4:52702143-52702162 None:intergenic 25.0%
!!! TTCATCACTTGTTTTTCATT+TGG + chr7_4:52702733-52702752 Msa1162190:three_prime_UTR 25.0%
GAATCATACATAAGTCCTTT+GGG - chr7_4:52696814-52696833 None:intergenic 30.0%
AGAATCATACATAAGTCCTT+TGG - chr7_4:52696815-52696834 None:intergenic 30.0%
GAAAAAGAGAAAGAGAAAGA+GGG - chr7_4:52696965-52696984 None:intergenic 30.0%
AGAAAAAGAGAAAGAGAAAG+AGG - chr7_4:52696966-52696985 None:intergenic 30.0%
!! TTCTTTCAGGTTTGTTTCTT+TGG + chr7_4:52697117-52697136 Msa1162190:intron 30.0%
GATTTCAGATTTGAATCAGT+TGG - chr7_4:52697288-52697307 None:intergenic 30.0%
TAGGAAACATGTATATCATC+AGG - chr7_4:52697366-52697385 None:intergenic 30.0%
! AACTTGTTTGGCTTATTGAT+TGG + chr7_4:52697824-52697843 Msa1162190:CDS 30.0%
TCAAAAACATTGCATTTAGC+TGG + chr7_4:52698011-52698030 Msa1162190:intron 30.0%
!!! GAAAGCACTAATGATTTTCT+AGG - chr7_4:52698104-52698123 None:intergenic 30.0%
! ATCTTTCATTTGGAACTTTC+TGG + chr7_4:52698212-52698231 Msa1162190:intron 30.0%
! CTTTTGTTAACCTATGCATT+TGG + chr7_4:52698287-52698306 Msa1162190:intron 30.0%
GGCAATCAATATACAAGAAA+AGG - chr7_4:52698399-52698418 None:intergenic 30.0%
ATCACAGAAGTGATATTGAT+TGG + chr7_4:52698469-52698488 Msa1162190:CDS 30.0%
ACTTCTTTACTCTTATGTGT+GGG + chr7_4:52698654-52698673 Msa1162190:intron 30.0%
CATCAATATATGCAGGTAAT+TGG + chr7_4:52699241-52699260 Msa1162190:intron 30.0%
! TTTCAATGTGTTTTCATCCT+TGG - chr7_4:52699314-52699333 None:intergenic 30.0%
TCATCATTATATTTCCAGTC+AGG + chr7_4:52699476-52699495 Msa1162190:intron 30.0%
TATATTTCCAGTCAGGTATA+CGG + chr7_4:52699483-52699502 Msa1162190:intron 30.0%
! ATGATTTTCCTCTTCCATTT+TGG + chr7_4:52699513-52699532 Msa1162190:CDS 30.0%
! ATCAAAACGTTTCTAGGAAT+AGG - chr7_4:52699620-52699639 None:intergenic 30.0%
! TTATACTTCACCTTAGTTCT+AGG - chr7_4:52699644-52699663 None:intergenic 30.0%
GTATTTCAAAGATACAGTAC+AGG - chr7_4:52699696-52699715 None:intergenic 30.0%
!! GTACTGTATCTTTGAAATAC+TGG + chr7_4:52699696-52699715 Msa1162190:intron 30.0%
! AATTCAGATTGGTTATCTTG+TGG + chr7_4:52699861-52699880 Msa1162190:intron 30.0%
!!! AATGAAATGTTTTGAGTTCG+AGG + chr7_4:52699906-52699925 Msa1162190:intron 30.0%
!!! GGGTACATGTTTAACTTTTT+TGG + chr7_4:52699996-52700015 Msa1162190:intron 30.0%
GATGTGATCTCATATGTTAT+GGG + chr7_4:52700288-52700307 Msa1162190:intron 30.0%
TAACCTATGGTACATGAATA+AGG + chr7_4:52700452-52700471 Msa1162190:intron 30.0%
!! CCTTACAGATTTTGTTACTT+TGG - chr7_4:52700499-52700518 None:intergenic 30.0%
CCAAAGTAACAAAATCTGTA+AGG + chr7_4:52700496-52700515 Msa1162190:intron 30.0%
TAACAAAATCTGTAAGGGAT+AGG + chr7_4:52700502-52700521 Msa1162190:intron 30.0%
!!! GGCTAGTTTTAATGCTAATT+AGG - chr7_4:52700544-52700563 None:intergenic 30.0%
! GATCTGATTTTCATTCACTT+GGG - chr7_4:52700702-52700721 None:intergenic 30.0%
AAATAGGTTACAGACAAGTT+TGG + chr7_4:52700824-52700843 Msa1162190:intron 30.0%
AATAGGTTACAGACAAGTTT+GGG + chr7_4:52700825-52700844 Msa1162190:intron 30.0%
CAAGTTTGGGTATATTTGAT+TGG + chr7_4:52700838-52700857 Msa1162190:intron 30.0%
! AGCATTTTTCCTAAGGTTTA+AGG + chr7_4:52700942-52700961 Msa1162190:intron 30.0%
!!! GGTTGTTGCCATTTTTAATA+TGG + chr7_4:52700963-52700982 Msa1162190:intron 30.0%
ACAGGAAATACAGAAAACAT+CGG - chr7_4:52701032-52701051 None:intergenic 30.0%
GTCTGTACATGATAAAATAC+GGG - chr7_4:52701380-52701399 None:intergenic 30.0%
!!! ATACCATTTTTTTTACCTCC+GGG + chr7_4:52702012-52702031 Msa1162190:intron 30.0%
!! TGCATTTTCAACTTTTGGTT+TGG + chr7_4:52702343-52702362 Msa1162190:CDS 30.0%
! AGTCTTGATTTTATTCTCAC+AGG + chr7_4:52702388-52702407 Msa1162190:CDS 30.0%
! TTGTTTGTCATTTATAGCCT+CGG - chr7_4:52702474-52702493 None:intergenic 30.0%
AACCAAAATCATGCATAGAT+AGG + chr7_4:52702520-52702539 Msa1162190:three_prime_UTR 30.0%
! ATCCTATCTATGCATGATTT+TGG - chr7_4:52702525-52702544 None:intergenic 30.0%
! ATCATGCATAGATAGGATTT+TGG + chr7_4:52702527-52702546 Msa1162190:three_prime_UTR 30.0%
!! TTTACCTTTAAAATCTACCG+TGG + chr7_4:52702603-52702622 Msa1162190:three_prime_UTR 30.0%
TAAGAATTGAAGACATACCA+CGG - chr7_4:52702623-52702642 None:intergenic 30.0%
GTATGTCTTCAATTCTTATG+TGG + chr7_4:52702625-52702644 Msa1162190:three_prime_UTR 30.0%
!! TACATAAGTCCTTTGGGATT+TGG - chr7_4:52696808-52696827 None:intergenic 35.0%
CCTGAAAGAAATTAACGATG+AGG - chr7_4:52697107-52697126 None:intergenic 35.0%
CCTCATCGTTAATTTCTTTC+AGG + chr7_4:52697104-52697123 Msa1162190:CDS 35.0%
TTTGGATTCATCATCGACAT+GGG + chr7_4:52697135-52697154 Msa1162190:intron 35.0%
ATTTGAATCAGTTGGGTAGT+GGG - chr7_4:52697280-52697299 None:intergenic 35.0%
! AAATCTGAAATCACCCAAGT+GGG + chr7_4:52697296-52697315 Msa1162190:intron 35.0%
ATCTAATTGAGAACCCACTT+GGG - chr7_4:52697312-52697331 None:intergenic 35.0%
GTTCAAATAAGCGCATAACT+GGG - chr7_4:52697340-52697359 None:intergenic 35.0%
AGTTCAAATAAGCGCATAAC+TGG - chr7_4:52697341-52697360 None:intergenic 35.0%
TACATGTTTCCTAGACTGTT+TGG + chr7_4:52697373-52697392 Msa1162190:intron 35.0%
ACATGTTTCCTAGACTGTTT+GGG + chr7_4:52697374-52697393 Msa1162190:intron 35.0%
TGTCGAAGAATTTGTACAGA+AGG + chr7_4:52697767-52697786 Msa1162190:CDS 35.0%
ATTTGTACAGAAGGATCAAC+CGG + chr7_4:52697776-52697795 Msa1162190:CDS 35.0%
! TTGTTTGGCTTATTGATTGG+TGG + chr7_4:52697827-52697846 Msa1162190:CDS 35.0%
! TGTTTGGCTTATTGATTGGT+GGG + chr7_4:52697828-52697847 Msa1162190:CDS 35.0%
!! TTAGCTGGTTTGTTGATTGT+AGG + chr7_4:52698026-52698045 Msa1162190:intron 35.0%
CCATCAAACTAAAAGTTTCG+CGG - chr7_4:52698261-52698280 None:intergenic 35.0%
!!! CGCGAAACTTTTAGTTTGAT+GGG + chr7_4:52698259-52698278 Msa1162190:CDS 35.0%
!!! TTGCTTGTGTGTTAGTCTTT+TGG + chr7_4:52698346-52698365 Msa1162190:intron 35.0%
!!! TGCTTGTGTGTTAGTCTTTT+GGG + chr7_4:52698347-52698366 Msa1162190:intron 35.0%
!! AGTCTTTTGGGTATGAAAAC+TGG + chr7_4:52698359-52698378 Msa1162190:intron 35.0%
!! AGTGATATTGATTGGCTTGT+TGG + chr7_4:52698477-52698496 Msa1162190:CDS 35.0%
!! ATATTGATTGGCTTGTTGGA+TGG + chr7_4:52698481-52698500 Msa1162190:CDS 35.0%
!! TATTGATTGGCTTGTTGGAT+GGG + chr7_4:52698482-52698501 Msa1162190:CDS 35.0%
!! GCTCAGGTGATTGTTTTATT+TGG + chr7_4:52698510-52698529 Msa1162190:intron 35.0%
TTGCGTTGAAGAAGTGAAAA+AGG - chr7_4:52698541-52698560 None:intergenic 35.0%
CACTTCTTTACTCTTATGTG+TGG + chr7_4:52698653-52698672 Msa1162190:intron 35.0%
AATATATGCAGGTAATTGGC+TGG + chr7_4:52699245-52699264 Msa1162190:intron 35.0%
! GTTTTCTGAGTATCTTTTCC+TGG + chr7_4:52699276-52699295 Msa1162190:CDS 35.0%
CATTAAGAGATACATGCTTG+TGG + chr7_4:52699372-52699391 Msa1162190:intron 35.0%
TGTCAAATTATTAGCTGCTC+AGG + chr7_4:52699571-52699590 Msa1162190:CDS 35.0%
CTAGGAATCAAAACGTTTCT+AGG - chr7_4:52699626-52699645 None:intergenic 35.0%
!!! CGTTTTGATTCCTAGAACTA+AGG + chr7_4:52699631-52699650 Msa1162190:CDS 35.0%
ATACAGTACAGGAAGAAGTA+AGG - chr7_4:52699685-52699704 None:intergenic 35.0%
CAGTAGATGCTAACATTGAA+TGG - chr7_4:52699739-52699758 None:intergenic 35.0%
GCTAAAGGGTAAATTCAGAT+TGG + chr7_4:52699850-52699869 Msa1162190:intron 35.0%
TTTCGTACATCTCGTGTAAT+CGG + chr7_4:52700135-52700154 Msa1162190:intron 35.0%
!!! TTTCTGGTTTTATTGTTGCG+TGG + chr7_4:52700233-52700252 Msa1162190:intron 35.0%
!! TGCTTCTGAAATGTACATGT+GGG + chr7_4:52700265-52700284 Msa1162190:intron 35.0%
GGATGTGATCTCATATGTTA+TGG + chr7_4:52700287-52700306 Msa1162190:intron 35.0%
!! TTTGATGAAGAGTTCTGGAA+AGG + chr7_4:52700311-52700330 Msa1162190:intron 35.0%
CTTCCTTATTCATGTACCAT+AGG - chr7_4:52700458-52700477 None:intergenic 35.0%
CTATGGTACATGAATAAGGA+AGG + chr7_4:52700456-52700475 Msa1162190:intron 35.0%
TTAATTAACTTTGGTTGGGC+TGG - chr7_4:52700565-52700584 None:intergenic 35.0%
!! TTCAGTCCTGAAGGTATTTA+GGG - chr7_4:52700597-52700616 None:intergenic 35.0%
!! ATTCAGTCCTGAAGGTATTT+AGG - chr7_4:52700598-52700617 None:intergenic 35.0%
!! AATCTAGCAAGGTTTTTGGA+AGG + chr7_4:52700657-52700676 Msa1162190:intron 35.0%
! CGATCTGATTTTCATTCACT+TGG - chr7_4:52700703-52700722 None:intergenic 35.0%
TACTTTGTAGCAGTTTCAGA+TGG + chr7_4:52700779-52700798 Msa1162190:intron 35.0%
ACTTTGTAGCAGTTTCAGAT+GGG + chr7_4:52700780-52700799 Msa1162190:intron 35.0%
! GTCTTCAAGCATTTTTCCTA+AGG + chr7_4:52700935-52700954 Msa1162190:intron 35.0%
TGTCTGCTAGCAATTATATC+AGG + chr7_4:52701108-52701127 Msa1162190:intron 35.0%
AGTATTTCAAAGCAAGTCAC+AGG - chr7_4:52701147-52701166 None:intergenic 35.0%
!!! CTTTTTTCAGGGGTTTGTTT+CGG + chr7_4:52701178-52701197 Msa1162190:intron 35.0%
! AATATCTAAGGCGTTAAAGG+AGG - chr7_4:52701657-52701676 None:intergenic 35.0%
! TAACTCAATTTTACCACCAC+AGG + chr7_4:52701712-52701731 Msa1162190:intron 35.0%
GTGGTGTAGAGATATATTTG+TGG + chr7_4:52701799-52701818 Msa1162190:CDS 35.0%
TAGAGATATATTTGTGGCCA+AGG + chr7_4:52701805-52701824 Msa1162190:CDS 35.0%
CATTAAAGAACTTCATGCAG+CGG - chr7_4:52701834-52701853 None:intergenic 35.0%
!!! TACCATTTTTTTTACCTCCG+GGG + chr7_4:52702013-52702032 Msa1162190:intron 35.0%
TGATCCATCAATTTCATGTG+TGG + chr7_4:52702229-52702248 Msa1162190:intron 35.0%
ATAGCAATGAAGACCATTGT+AGG - chr7_4:52702307-52702326 None:intergenic 35.0%
TTCATTGCTATCATCATGGA+AGG + chr7_4:52702316-52702335 Msa1162190:CDS 35.0%
TCATTGCTATCATCATGGAA+GGG + chr7_4:52702317-52702336 Msa1162190:CDS 35.0%
! TGTTTGTCATTTATAGCCTC+GGG - chr7_4:52702473-52702492 None:intergenic 35.0%
!! GATTTTGGTGAACTTGAAGT+TGG + chr7_4:52702542-52702561 Msa1162190:three_prime_UTR 35.0%
! CATACCACGGTAGATTTTAA+AGG - chr7_4:52702610-52702629 None:intergenic 35.0%
! GGTTTTCGATCACAGTAGAA+TGG - chr7_4:52696787-52696806 None:intergenic 40.0%
GATCGAAAACCAAATCCCAA+AGG + chr7_4:52696796-52696815 Msa1162190:five_prime_UTR 40.0%
!! TCTCAAGTTGAAGAAGCTGA+AGG + chr7_4:52696832-52696851 Msa1162190:five_prime_UTR 40.0%
AAGAGAAAGAGAAAGAGGGA+GGG - chr7_4:52696961-52696980 None:intergenic 40.0%
AAAGAGAAAGAGAAAGAGGG+AGG - chr7_4:52696962-52696981 None:intergenic 40.0%
AAACAACGGAGTTTCCGAAA+TGG - chr7_4:52696995-52697014 None:intergenic 40.0%
CTTTGGATTCATCATCGACA+TGG + chr7_4:52697134-52697153 Msa1162190:intron 40.0%
GATTTGAATCAGTTGGGTAG+TGG - chr7_4:52697281-52697300 None:intergenic 40.0%
! CAAATCTGAAATCACCCAAG+TGG + chr7_4:52697295-52697314 Msa1162190:intron 40.0%
GATCTAATTGAGAACCCACT+TGG - chr7_4:52697313-52697332 None:intergenic 40.0%
CTGTACAAATTCTTCGACAG+CGG - chr7_4:52697766-52697785 None:intergenic 40.0%
TTTGTACAGAAGGATCAACC+GGG + chr7_4:52697777-52697796 Msa1162190:CDS 40.0%
CTTGAGTCACTAGTTACACT+GGG - chr7_4:52697956-52697975 None:intergenic 40.0%
TCTTGAGTCACTAGTTACAC+TGG - chr7_4:52697957-52697976 None:intergenic 40.0%
ACTCAAGAATAGTGCCTTCA+CGG + chr7_4:52697969-52697988 Msa1162190:intron 40.0%
GACTAATCATTGAACCGTGA+AGG - chr7_4:52697986-52698005 None:intergenic 40.0%
GCAACGATTCATAGAACTCT+AGG + chr7_4:52698054-52698073 Msa1162190:intron 40.0%
!!! CCGCGAAACTTTTAGTTTGA+TGG + chr7_4:52698258-52698277 Msa1162190:CDS 40.0%
TTAACCTATGCATTTGGCAC+TGG + chr7_4:52698293-52698312 Msa1162190:intron 40.0%
TAACCTATGCATTTGGCACT+GGG + chr7_4:52698294-52698313 Msa1162190:intron 40.0%
CAACATGATCAAACAGCGTT+CGG + chr7_4:52698769-52698788 Msa1162190:intron 40.0%
AACATGATCAAACAGCGTTC+GGG + chr7_4:52698770-52698789 Msa1162190:intron 40.0%
GAAATCGTCAAAGTTTCTGC+CGG + chr7_4:52698823-52698842 Msa1162190:CDS 40.0%
AGTCACAGTGAAGCATATAC+CGG - chr7_4:52698845-52698864 None:intergenic 40.0%
GAATGTACACTCTGCAGTTT+AGG + chr7_4:52698926-52698945 Msa1162190:intron 40.0%
! ATCTTTTCCTGGAGAGAAGT+TGG + chr7_4:52699287-52699306 Msa1162190:CDS 40.0%
! TCTTTTCCTGGAGAGAAGTT+GGG + chr7_4:52699288-52699307 Msa1162190:CDS 40.0%
!! TTTTCCTCTTCCATTTTGGC+TGG + chr7_4:52699517-52699536 Msa1162190:CDS 40.0%
TATGTTAGTATTGCTACGGC+TGG + chr7_4:52699819-52699838 Msa1162190:intron 40.0%
CTTGTGGATAACACATCTGT+TGG + chr7_4:52699877-52699896 Msa1162190:intron 40.0%
TCTGTGATGCTTGCATCATA+AGG + chr7_4:52700210-52700229 Msa1162190:intron 40.0%
TGCTTGCATCATAAGGTTTC+TGG + chr7_4:52700217-52700236 Msa1162190:intron 40.0%
TTATTGTTGCGTGGCAGTTA+TGG + chr7_4:52700242-52700261 Msa1162190:intron 40.0%
!! GTGCTTCTGAAATGTACATG+TGG + chr7_4:52700264-52700283 Msa1162190:intron 40.0%
!! GCTTCTGAAATGTACATGTG+GGG + chr7_4:52700266-52700285 Msa1162190:intron 40.0%
ATGGGTTTGATGAAGAGTTC+TGG + chr7_4:52700306-52700325 Msa1162190:intron 40.0%
!! AGAGTTCTGGAAAGGAACAA+CGG + chr7_4:52700319-52700338 Msa1162190:intron 40.0%
TATCATTGCAGCACAACTGT+GGG + chr7_4:52700359-52700378 Msa1162190:intron 40.0%
TGTGGGAAAGACTACAGTTA+AGG + chr7_4:52700376-52700395 Msa1162190:intron 40.0%
TTATCCATGCCTGATCTACA+TGG - chr7_4:52700410-52700429 None:intergenic 40.0%
AGAAACCCCTAAATACCTTC+AGG + chr7_4:52700588-52700607 Msa1162190:intron 40.0%
!! TCAGTCCTGAAGGTATTTAG+GGG - chr7_4:52700596-52700615 None:intergenic 40.0%
AAACGAAGATTCAGTCCTGA+AGG - chr7_4:52700606-52700625 None:intergenic 40.0%
!! GTTTTTGGAAGGTTAAAGCC+AGG + chr7_4:52700668-52700687 Msa1162190:intron 40.0%
TTCACTTGGGATAAAATGCC+TGG - chr7_4:52700689-52700708 None:intergenic 40.0%
TTTCAGATGGGTAGTTGCAA+GGG + chr7_4:52700792-52700811 Msa1162190:intron 40.0%
ATAGTCCCACACAAGTTCAT+GGG - chr7_4:52700905-52700924 None:intergenic 40.0%
AATAGTCCCACACAAGTTCA+TGG - chr7_4:52700906-52700925 None:intergenic 40.0%
TGGCAACAACCTTAAACCTT+AGG - chr7_4:52700954-52700973 None:intergenic 40.0%
ACATCGGAGAGACAAAACAA+TGG - chr7_4:52701016-52701035 None:intergenic 40.0%
AGCCACTGTTATGTCGTAAA+CGG - chr7_4:52701234-52701253 None:intergenic 40.0%
TGTAAGAGCCTTAGCATTGT+AGG - chr7_4:52701278-52701297 None:intergenic 40.0%
TACAATGCTAAGGCTCTTAC+AGG + chr7_4:52701277-52701296 Msa1162190:CDS 40.0%
ACAATGCTAAGGCTCTTACA+GGG + chr7_4:52701278-52701297 Msa1162190:CDS 40.0%
TTGATATGAACTTGCACCTG+TGG - chr7_4:52701731-52701750 None:intergenic 40.0%
GTTAGACAAACATGTAGCTG+AGG + chr7_4:52702050-52702069 Msa1162190:CDS 40.0%
TGCTCCACACATGAAATTGA+TGG - chr7_4:52702236-52702255 None:intergenic 40.0%
ATCAATTTCATGTGTGGAGC+AGG + chr7_4:52702235-52702254 Msa1162190:intron 40.0%
GCAGTGTTAAGTTCCTACAA+TGG + chr7_4:52702291-52702310 Msa1162190:CDS 40.0%
GGTCTTCATTGCTATCATCA+TGG + chr7_4:52702312-52702331 Msa1162190:CDS 40.0%
! GGCGTTGCATTTTCAACTTT+TGG + chr7_4:52702338-52702357 Msa1162190:CDS 40.0%
!! TTTGGTTTGGCAGTTGTTAC+TGG + chr7_4:52702356-52702375 Msa1162190:CDS 40.0%
!!! GGTTGTTCCTCCTTGTTTTT+CGG - chr7_4:52702452-52702471 None:intergenic 40.0%
GGAAACTCCGTTGTTTGTGT+CGG + chr7_4:52696999-52697018 Msa1162190:five_prime_UTR 45.0%
TCGTACTCCGACACAAACAA+CGG - chr7_4:52697009-52697028 None:intergenic 45.0%
TAAGCTCTCCCAAACAGTCT+AGG - chr7_4:52697385-52697404 None:intergenic 45.0%
! TGTTGTGGCTGGAACTTGTT+TGG + chr7_4:52697812-52697831 Msa1162190:CDS 45.0%
!! ATTTGGAACTTTCTGGCTCC+AGG + chr7_4:52698219-52698238 Msa1162190:intron 45.0%
GCTCCAGGTCGAAATATACA+CGG + chr7_4:52698234-52698253 Msa1162190:intron 45.0%
!!! TGTTGGATGGGTTTTAGCTC+AGG + chr7_4:52698494-52698513 Msa1162190:CDS 45.0%
TTGGTTGTAACTTACCTGCC+TGG + chr7_4:52699099-52699118 Msa1162190:intron 45.0%
TGGTTGTAACTTACCTGCCT+GGG + chr7_4:52699100-52699119 Msa1162190:intron 45.0%
CAGTGTTACATGTAACTCCC+AGG - chr7_4:52699120-52699139 None:intergenic 45.0%
CTGGGAGTTACATGTAACAC+TGG + chr7_4:52699118-52699137 Msa1162190:intron 45.0%
! AGGTAATTGGCTGGTCAATG+TGG + chr7_4:52699254-52699273 Msa1162190:intron 45.0%
ATTTCCAGTCAGGTATACGG+CGG + chr7_4:52699486-52699505 Msa1162190:intron 45.0%
ACAAAGAGAGCCAGCCAAAA+TGG - chr7_4:52699530-52699549 None:intergenic 45.0%
TCTAGGAATAGGCAATCCAG+TGG - chr7_4:52699609-52699628 None:intergenic 45.0%
ATACTGGAAGCTATGCTGCA+TGG + chr7_4:52699712-52699731 Msa1162190:intron 45.0%
CATCTCGTGTAATCGGTTAC+TGG + chr7_4:52700142-52700161 Msa1162190:intron 45.0%
!! GAGTTCTGGAAAGGAACAAC+GGG + chr7_4:52700320-52700339 Msa1162190:intron 45.0%
! AAAGGAACAACGGGCTTTGA+TGG + chr7_4:52700329-52700348 Msa1162190:intron 45.0%
! AAGGAACAACGGGCTTTGAT+GGG + chr7_4:52700330-52700349 Msa1162190:intron 45.0%
GTATCATTGCAGCACAACTG+TGG + chr7_4:52700358-52700377 Msa1162190:intron 45.0%
! GTTTTGCGTCCATGTAGATC+AGG + chr7_4:52700398-52700417 Msa1162190:intron 45.0%
GTTTCAGATGGGTAGTTGCA+AGG + chr7_4:52700791-52700810 Msa1162190:intron 45.0%
TTCAGATGGGTAGTTGCAAG+GGG + chr7_4:52700793-52700812 Msa1162190:intron 45.0%
TCTCTTCCCATGAACTTGTG+TGG + chr7_4:52700896-52700915 Msa1162190:intron 45.0%
CTCTTCCCATGAACTTGTGT+GGG + chr7_4:52700897-52700916 Msa1162190:intron 45.0%
ACTGTTATGTCGTAAACGGC+AGG - chr7_4:52701230-52701249 None:intergenic 45.0%
! TGCCGTTTACGACATAACAG+TGG + chr7_4:52701229-52701248 Msa1162190:CDS 45.0%
CAATGCTAAGGCTCTTACAG+GGG + chr7_4:52701279-52701298 Msa1162190:CDS 45.0%
CATATCTGCACTGTGTGTGT+GGG - chr7_4:52701473-52701492 None:intergenic 45.0%
TCATATCTGCACTGTGTGTG+TGG - chr7_4:52701474-52701493 None:intergenic 45.0%
AGGCGTTAAAGGAGGAAGAT+TGG - chr7_4:52701649-52701668 None:intergenic 45.0%
ATATGAACTTGCACCTGTGG+TGG - chr7_4:52701728-52701747 None:intergenic 45.0%
GCAACAGCTTCATCTGTTTC+TGG - chr7_4:52701776-52701795 None:intergenic 45.0%
TGCCCCGGAGGTAAAAAAAA+TGG - chr7_4:52702018-52702037 None:intergenic 45.0%
TTTCAGTGATCAAGAGCTGC+AGG + chr7_4:52702077-52702096 Msa1162190:CDS 45.0%
TCGACCAATAAAGCCTCTTG+CGG + chr7_4:52702107-52702126 Msa1162190:CDS 45.0%
! CTAACCGCAAGAGGCTTTAT+TGG - chr7_4:52702114-52702133 None:intergenic 45.0%
!! AGGAAGTATCTAACCGCAAG+AGG - chr7_4:52702123-52702142 None:intergenic 45.0%
!! CTTGTTTTTCGGCTTTGCAG+GGG - chr7_4:52702441-52702460 None:intergenic 45.0%
!!! CCTTGTTTTTCGGCTTTGCA+GGG - chr7_4:52702442-52702461 None:intergenic 45.0%
!!! TCCTTGTTTTTCGGCTTTGC+AGG - chr7_4:52702443-52702462 None:intergenic 45.0%
TGCAAAGCCGAAAAACAAGG+AGG + chr7_4:52702442-52702461 Msa1162190:CDS 45.0%
!! TTATAATACTTTAATTATTT+AGG - chr7_4:52700435-52700454 None:intergenic 5.0%
!! TATATAAATAAAAATATCTA+AGG - chr7_4:52701669-52701688 None:intergenic 5.0%
! TGGCTTATTGATTGGTGGGC+TGG + chr7_4:52697832-52697851 Msa1162190:CDS 50.0%
!! TGATTGGTGGGCTGGAGTTA+AGG + chr7_4:52697840-52697859 Msa1162190:CDS 50.0%
GGTCCGTGTATATTTCGACC+TGG - chr7_4:52698240-52698259 None:intergenic 50.0%
!! TCACTGCTAGAGTACTGCCA+AGG - chr7_4:52698799-52698818 None:intergenic 50.0%
GTTACATGTAACTCCCAGGC+AGG - chr7_4:52699116-52699135 None:intergenic 50.0%
AGAGCCAGCCAAAATGGAAG+AGG - chr7_4:52699524-52699543 None:intergenic 50.0%
! TGGCTGGCTCTCTTTGTAGA+AGG + chr7_4:52699533-52699552 Msa1162190:CDS 50.0%
CAGGAATATGCAACCTCCAC+TGG + chr7_4:52699590-52699609 Msa1162190:CDS 50.0%
AGGAATAGGCAATCCAGTGG+AGG - chr7_4:52699606-52699625 None:intergenic 50.0%
TAGTATTGCTACGGCTGGCA+AGG + chr7_4:52699824-52699843 Msa1162190:intron 50.0%
AGTATTGCTACGGCTGGCAA+GGG + chr7_4:52699825-52699844 Msa1162190:intron 50.0%
!!! TCCCTCCCATTTTTTGCTGC+AGG + chr7_4:52700022-52700041 Msa1162190:intron 50.0%
CCCTGCAGCAAAAAATGGGA+GGG - chr7_4:52700026-52700045 None:intergenic 50.0%
!!! CCCTCCCATTTTTTGCTGCA+GGG + chr7_4:52700023-52700042 Msa1162190:intron 50.0%
TCCCTGCAGCAAAAAATGGG+AGG - chr7_4:52700027-52700046 None:intergenic 50.0%
!!! TCCCATTTTTTGCTGCAGGG+AGG + chr7_4:52700026-52700045 Msa1162190:intron 50.0%
CCCTCCCTGCAGCAAAAAAT+GGG - chr7_4:52700030-52700049 None:intergenic 50.0%
!!! CCCATTTTTTGCTGCAGGGA+GGG + chr7_4:52700027-52700046 Msa1162190:intron 50.0%
!!! CCATTTTTTGCTGCAGGGAG+GGG + chr7_4:52700028-52700047 Msa1162190:intron 50.0%
! GCAAGGGGCTTGGTAGAAAT+AGG + chr7_4:52700808-52700827 Msa1162190:intron 50.0%
TAGGAGCAGGTGAACTCTTG+GGG - chr7_4:52701259-52701278 None:intergenic 50.0%
GTAGGAGCAGGTGAACTCTT+GGG - chr7_4:52701260-52701279 None:intergenic 50.0%
TGTAGGAGCAGGTGAACTCT+TGG - chr7_4:52701261-52701280 None:intergenic 50.0%
CACCTGCTCCTACAATGCTA+AGG + chr7_4:52701267-52701286 Msa1162190:CDS 50.0%
AGCCTTAGCATTGTAGGAGC+AGG - chr7_4:52701272-52701291 None:intergenic 50.0%
CTTACAGGGGAAACGTTCAG+TGG + chr7_4:52701292-52701311 Msa1162190:CDS 50.0%
CAGATGAAGCTGTTGCTCAG+TGG + chr7_4:52701780-52701799 Msa1162190:CDS 50.0%
ACTTCATGCAGCGGTTACCT+TGG - chr7_4:52701825-52701844 None:intergenic 50.0%
!!! TTTTTTACCTCCGGGGCATC+AGG + chr7_4:52702020-52702039 Msa1162190:intron 50.0%
AACAATGCATCCTGATGCCC+CGG - chr7_4:52702033-52702052 None:intergenic 50.0%
! TGGAGCAGGTAGCTCTATCT+TGG + chr7_4:52702249-52702268 Msa1162190:intron 50.0%
! GGAGCAGGTAGCTCTATCTT+GGG + chr7_4:52702250-52702269 Msa1162190:intron 50.0%
! GAGCAGGTAGCTCTATCTTG+GGG + chr7_4:52702251-52702270 Msa1162190:intron 50.0%
AGCTCTATCTTGGGGCTTTG+TGG + chr7_4:52702259-52702278 Msa1162190:CDS 50.0%
CCCTGCAAAGCCGAAAAACA+AGG + chr7_4:52702439-52702458 Msa1162190:CDS 50.0%
AAACAAGGAGGAACAACCCG+AGG + chr7_4:52702454-52702473 Msa1162190:CDS 50.0%
TGTCGGAGTACGACAGAGAG+AGG + chr7_4:52697016-52697035 Msa1162190:five_prime_UTR 55.0%
GTCGGAGTACGACAGAGAGA+GGG + chr7_4:52697017-52697036 Msa1162190:five_prime_UTR 55.0%
TATTGCAGCGGCTGCTGTTG+TGG + chr7_4:52697050-52697069 Msa1162190:CDS 55.0%
GCTGCTGTTGTGGTTCCACT+AGG + chr7_4:52697060-52697079 Msa1162190:CDS 55.0%
GTGAAGAAGAGCAGGCCTAG+TGG - chr7_4:52697078-52697097 None:intergenic 55.0%
GGCCTGCTCTTCTTCACTTC+TGG + chr7_4:52697081-52697100 Msa1162190:CDS 55.0%
GGCCAGAAGTGAAGAAGAGC+AGG - chr7_4:52697086-52697105 None:intergenic 55.0%
GTACAGAAGGATCAACCGGG+TGG + chr7_4:52697780-52697799 Msa1162190:CDS 55.0%
ACAACAGTTCTGCCACCACC+CGG - chr7_4:52697798-52697817 None:intergenic 55.0%
GCACCCAGTGCCAAATGCAT+AGG - chr7_4:52698300-52698319 None:intergenic 55.0%
!! AAACAGCGTTCGGGTTGCCT+TGG + chr7_4:52698779-52698798 Msa1162190:intron 55.0%
TCAACCGCCGTATACCTGAC+TGG - chr7_4:52699493-52699512 None:intergenic 55.0%
GGCTGGCAAGGGTAGCTAAA+GGG + chr7_4:52699836-52699855 Msa1162190:intron 55.0%
CCCCTCCCTGCAGCAAAAAA+TGG - chr7_4:52700031-52700050 None:intergenic 55.0%
!! CAACGGGCTTTGATGGGTTG+AGG + chr7_4:52700336-52700355 Msa1162190:intron 55.0%
GCGTCCATGTAGATCAGGCA+TGG + chr7_4:52700403-52700422 Msa1162190:intron 55.0%
ATGGGTAGTTGCAAGGGGCT+TGG + chr7_4:52700798-52700817 Msa1162190:intron 55.0%
! TGGGGCTTTGTGGTTGTTGC+AGG + chr7_4:52702269-52702288 Msa1162190:CDS 55.0%
! ACAGGCAGAGCGTTCAAACC+CGG + chr7_4:52702406-52702425 Msa1162190:CDS 55.0%
GGAGTACGACAGAGAGAGGG+CGG + chr7_4:52697020-52697039 Msa1162190:five_prime_UTR 60.0%
GAGTACGACAGAGAGAGGGC+GGG + chr7_4:52697021-52697040 Msa1162190:five_prime_UTR 60.0%
CAGAAGGATCAACCGGGTGG+TGG + chr7_4:52697783-52697802 Msa1162190:CDS 60.0%
! GGGTGGTGGCAGAACTGTTG+TGG + chr7_4:52697797-52697816 Msa1162190:CDS 60.0%
GGTGGCAGAACTGTTGTGGC+TGG + chr7_4:52697801-52697820 Msa1162190:CDS 60.0%
CCTTGGCCCAACTTCTCTCC+AGG - chr7_4:52699297-52699316 None:intergenic 60.0%
CCTGGAGAGAAGTTGGGCCA+AGG + chr7_4:52699294-52699313 Msa1162190:CDS 60.0%
CGGCTGGCAAGGGTAGCTAA+AGG + chr7_4:52699835-52699854 Msa1162190:intron 60.0%
AATGCATCCTGATGCCCCGG+AGG - chr7_4:52702030-52702049 None:intergenic 60.0%
! AGAGCGTTCAAACCCGGCCA+AGG + chr7_4:52702412-52702431 Msa1162190:CDS 60.0%
TTTGCAGGGGCTACCTTGGC+CGG - chr7_4:52702428-52702447 None:intergenic 60.0%
GGCGGGCATGGCTATTGCAG+CGG + chr7_4:52697038-52697057 Msa1162190:exon 65.0%
TGGGCGCACACGCATGGTGT+TGG - chr7_4:52701454-52701473 None:intergenic 65.0%
TGTGTGTGGGCGCACACGCA+TGG - chr7_4:52701460-52701479 None:intergenic 65.0%
TTGCAGGGGCTACCTTGGCC+GGG - chr7_4:52702427-52702446 None:intergenic 65.0%
CGGCTTTGCAGGGGCTACCT+TGG - chr7_4:52702432-52702451 None:intergenic 65.0%
CGACAGAGAGAGGGCGGGCA+TGG + chr7_4:52697026-52697045 Msa1162190:exon 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 52696760 52702789 52696760 ID=Msa1162190;Name=Msa1162190
chr7_4 mRNA 52696760 52702789 52696760 ID=Msa1162190-mRNA-1;Parent=Msa1162190;Name=Msa1162190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=285|1|1|1|0.9|0.90|11|290|387
chr7_4 exon 52696760 52697125 52696760 ID=Msa1162190-mRNA-1:exon:15186;Parent=Msa1162190-mRNA-1
chr7_4 exon 52697739 52697861 52697739 ID=Msa1162190-mRNA-1:exon:15187;Parent=Msa1162190-mRNA-1
chr7_4 exon 52698241 52698280 52698241 ID=Msa1162190-mRNA-1:exon:15188;Parent=Msa1162190-mRNA-1
chr7_4 exon 52698442 52698515 52698442 ID=Msa1162190-mRNA-1:exon:15189;Parent=Msa1162190-mRNA-1
chr7_4 exon 52698785 52698844 52698785 ID=Msa1162190-mRNA-1:exon:15190;Parent=Msa1162190-mRNA-1
chr7_4 exon 52699256 52699333 52699256 ID=Msa1162190-mRNA-1:exon:15191;Parent=Msa1162190-mRNA-1
chr7_4 exon 52699494 52699652 52699494 ID=Msa1162190-mRNA-1:exon:15192;Parent=Msa1162190-mRNA-1
chr7_4 exon 52701188 52701313 52701188 ID=Msa1162190-mRNA-1:exon:15193;Parent=Msa1162190-mRNA-1
chr7_4 exon 52701734 52701826 52701734 ID=Msa1162190-mRNA-1:exon:15194;Parent=Msa1162190-mRNA-1
chr7_4 exon 52702042 52702128 52702042 ID=Msa1162190-mRNA-1:exon:15195;Parent=Msa1162190-mRNA-1
chr7_4 exon 52702257 52702789 52702257 ID=Msa1162190-mRNA-1:exon:15196;Parent=Msa1162190-mRNA-1
chr7_4 five_prime_UTR 52696760 52697044 52696760 ID=Msa1162190-mRNA-1:five_prime_utr;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52697045 52697125 52697045 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52697739 52697861 52697739 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52698241 52698280 52698241 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52698442 52698515 52698442 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52698785 52698844 52698785 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52699256 52699333 52699256 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52699494 52699652 52699494 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52701188 52701313 52701188 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52701734 52701826 52701734 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52702042 52702128 52702042 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 CDS 52702257 52702499 52702257 ID=Msa1162190-mRNA-1:cds;Parent=Msa1162190-mRNA-1
chr7_4 three_prime_UTR 52702500 52702789 52702500 ID=Msa1162190-mRNA-1:three_prime_utr;Parent=Msa1162190-mRNA-1
Gene Sequence

>Msa1162190

ATGGCTATTGCAGCGGCTGCTGTTGTGGTTCCACTAGGCCTGCTCTTCTTCACTTCTGGCCTCATCGTTAATTTCTTTCAGGCAATATGCTACGTGCTAGTAAGACCGCTGTCGAAGAATTTGTACAGAAGGATCAACCGGGTGGTGGCAGAACTGTTGTGGCTGGAACTTGTTTGGCTTATTGATTGGTGGGCTGGAGTTAAGGTCGAAATATACACGGACCGCGAAACTTTTAGTTTGATGGGTAAAGAACATGCACTTGTCATATGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGCGTTCGGGTTGCCTTGGCAGTACTCTAGCAGTGATGAAGAAATCGTCAAAGTTTCTGCCGGTAATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAAAACACATTGAAATCAGGTATACGGCGGTTGAATGATTTTCCTCTTCCATTTTGGCTGGCTCTCTTTGTAGAAGGAACAAGTTTTACAAATGTCAAATTATTAGCTGCTCAGGAATATGCAACCTCCACTGGATTGCCTATTCCTAGAAACGTTTTGATTCCTAGAACTAAGGGGTTTGTTTCGGCTGTAAGTCATATGCGATCATTTGTTCCTGCCGTTTACGACATAACAGTGGCTATCCCCAAGAGTTCACCTGCTCCTACAATGCTAAGGCTCTTACAGGGGAAACGTTCAGTGGTGCAAGTTCATATCAAGCGACATTTGATGAATGAATTGCCAGAAACAGATGAAGCTGTTGCTCAGTGGTGTAGAGATATATTTGTGGCCAAGGATGCATTGTTAGACAAACATGTAGCTGAGGATACTTTCAGTGATCAAGAGCTGCAGGACTCTCGTCGACCAATAAAGCCTCTTGCGGTAGCTCTATCTTGGGGCTTTGTGGTTGTTGCAGGCAGTGTTAAGTTCCTACAATGGTCTTCATTGCTATCATCATGGAAGGGCGTTGCATTTTCAACTTTTGGTTTGGCAGTTGTTACTGGTCTCATGCAAGTCTTGATTTTATTCTCACAGGCAGAGCGTTCAAACCCGGCCAAGGTAGCCCCTGCAAAGCCGAAAAACAAGGAGGAACAACCCGAGGCTATAAATGACAAACAACAGTAG

Protein sequence

>Msa1162190

MAIAAAAVVVPLGLLFFTSGLIVNFFQAICYVLVRPLSKNLYRRINRVVAELLWLELVWLIDWWAGVKVEIYTDRETFSLMGKEHALVICNHRSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDENTLKSGIRRLNDFPLPFWLALFVEGTSFTNVKLLAAQEYATSTGLPIPRNVLIPRTKGFVSAVSHMRSFVPAVYDITVAIPKSSPAPTMLRLLQGKRSVVQVHIKRHLMNELPETDEAVAQWCRDIFVAKDALLDKHVAEDTFSDQELQDSRRPIKPLAVALSWGFVVVAGSVKFLQWSSLLSSWKGVAFSTFGLAVVTGLMQVLILFSQAERSNPAKVAPAKPKNKEEQPEAINDKQQ*