AlfalfaGEDB | Msa0124060

M. sativa cultivar zhongmu-4 / Msa0124060

KEGG: K02183|K11251
GO: GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009581 GO:0009582 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016048 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040029 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051606 GO:0051704 GO:0051707 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0090567 GO:0097159 GO:0098542 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00125.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124060	XP_003590550.1	100.000	134	0	0	1	134	1	134	9.26e-90	266

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124060	sp\|O23628\|H2AV1_ARATH	91.912	136	9	1	1	134	1	136	5.17e-78	229

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124060	A0A2K3P8T8	100.000	134	0	0	1	134	1	134	4.42e-90	266

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0124060	0.820349	7.189649e-53	-8.615850e-47
Msa0000190	Msa0124060	0.823625	1.252461e-53	-8.615850e-47
Msa0001450	Msa0124060	0.826395	2.776834e-54	-8.615850e-47
Msa0001780	Msa0124060	0.805657	1.201111e-49	-8.615850e-47
Msa0001940	Msa0124060	0.804567	2.030720e-49	-8.615850e-47
Msa0003700	Msa0124060	0.859325	4.473409e-63	-8.615850e-47
Msa0003720	Msa0124060	0.829692	4.464356e-55	-8.615850e-47
Msa0003890	Msa0124060	0.819363	1.208215e-52	-8.615850e-47
Msa0005890	Msa0124060	0.834703	2.570418e-56	-8.615850e-47
Msa0006110	Msa0124060	0.804949	1.689388e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124060	MtrunA17_Chr1g0184901	100.000	134	0	0	1	134	1	134	8.52e-94	266
Msa0124060	MtrunA17_Chr1g0211651	91.473	129	11	0	6	134	3	131	4.51e-82	236
Msa0124060	MtrunA17_Chr1g0148961	86.567	134	18	0	1	134	1	134	8.01e-80	231
Msa0124060	MtrunA17_Chr1g0148951	86.567	134	18	0	1	134	1	134	8.01e-80	231
Msa0124060	MtrunA17_Chr4g0024701	73.881	134	15	1	1	134	1	114	8.12e-55	167
Msa0124060	MtrunA17_Chr2g0319191	64.545	110	37	2	24	132	14	122	8.07e-40	130
Msa0124060	MtrunA17_Chr2g0319181	64.545	110	37	2	24	132	14	122	9.64e-40	129
Msa0124060	MtrunA17_Chr7g0268831	59.016	122	47	3	11	130	6	126	2.14e-39	129
Msa0124060	MtrunA17_Chr7g0273351	59.664	119	45	3	14	130	6	123	1.14e-38	127
Msa0124060	MtrunA17_Chr7g0259151	55.118	127	50	3	10	130	1	126	4.17e-38	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0124060	AT3G54560.1	91.912	136	9	1	1	134	1	136	5.25e-79	229
Msa0124060	AT3G54560.2	91.912	136	9	1	1	134	1	136	5.25e-79	229
Msa0124060	AT2G38810.1	89.706	136	12	1	1	134	1	136	8.53e-77	224
Msa0124060	AT2G38810.4	89.706	136	12	1	1	134	1	136	8.53e-77	224
Msa0124060	AT2G38810.3	89.706	136	12	1	1	134	1	136	8.53e-77	224
Msa0124060	AT2G38810.2	89.706	136	12	1	1	134	1	136	8.53e-77	224
Msa0124060	AT1G52740.1	82.836	134	23	0	1	134	1	134	2.15e-71	210
Msa0124060	AT4G13570.1	78.022	91	20	0	34	124	28	118	3.31e-47	148
Msa0124060	AT4G13570.2	78.889	90	19	0	35	124	35	124	6.73e-47	148
Msa0124060	AT3G20670.1	64.545	110	37	2	24	132	14	122	6.60e-40	130

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Find 58 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAATAATGAATATG+GGG	0.603363	1_3:+51526845	None:intergenic
AAAGCAAAGAAATCATTCTT+TGG	0.335830	1_3:+51525214	None:intergenic
AAATGATGGTGATCACAGTA+GGG	0.620882	1_3:-51525132	Msa0124060:three_prime_UTR
AAATGCTAGCAAAGATTTGA+AGG	0.477120	1_3:-51525369	Msa0124060:CDS
AAGCAAAGAGTCCAAGCTAA+TGG	0.447447	1_3:-51525470	Msa0124060:CDS
AAGGGAACAATTGCTGGTGG+TGG	0.621502	1_3:-51525278	Msa0124060:CDS
ACTTCTCGTTCTTCTCGTGC+TGG	0.468244	1_3:-51526524	Msa0124060:CDS
AGCAACAGCTGCAGTGTATT+TGG	0.282329	1_3:-51525438	Msa0124060:CDS
AGCAATTGTTCCCTTGATAA+GGG	0.441041	1_3:+51525286	None:intergenic
AGCACGAGAAGAACGAGAAG+TGG	0.609010	1_3:+51526526	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTAAACGAAGAAGAGAA+GGG	+	chr1_3:51525044-51525063	None:intergenic	30.0%
ATGTTTAAACGAAGAAGAGA+AGG	+	chr1_3:51525045-51525064	None:intergenic	30.0%
CGAAGAAAGGGAAAAAAAAA+GGG	+	chr1_3:51525275-51525294	None:intergenic	30.0%
ACGAAGAAAGGGAAAAAAAA+AGG	+	chr1_3:51525276-51525295	None:intergenic	30.0%
TTAGACGATAATTCTCATCT+AGG	-	chr1_3:51525344-51525363	Msa0124060:CDS	30.0%
TAGACGATAATTCTCATCTA+GGG	-	chr1_3:51525345-51525364	Msa0124060:CDS	30.0%
TTTATAATCAACCCCCAATT+GGG	+	chr1_3:51525604-51525623	None:intergenic	30.0%
AACATCTACATGAAATCCAA+AGG	+	chr1_3:51526128-51526147	None:intergenic	30.0%
AACTGTAAAATTTGCAATGG+TGG	-	chr1_3:51526231-51526250	Msa0124060:intron	30.0%
AAATGCTAGCAAAGATTTGA+AGG	-	chr1_3:51526391-51526410	Msa0124060:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	51524903	51526879	51524903	ID=Msa0124060;Name=Msa0124060
chr1_3	mRNA	51524903	51526879	51524903	ID=Msa0124060-mRNA-1;Parent=Msa0124060;Name=Msa0124060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132\|1\|1\|1\|0.5\|0.33\|3\|323\|134
chr1_3	exon	51524903	51525522	51524903	ID=Msa0124060-mRNA-1:exon:15749;Parent=Msa0124060-mRNA-1
chr1_3	exon	51526517	51526635	51526517	ID=Msa0124060-mRNA-1:exon:15748;Parent=Msa0124060-mRNA-1
chr1_3	exon	51526759	51526879	51526759	ID=Msa0124060-mRNA-1:exon:15747;Parent=Msa0124060-mRNA-1
chr1_3	five_prime_UTR	51526759	51526879	51526759	ID=Msa0124060-mRNA-1:five_prime_utr;Parent=Msa0124060-mRNA-1
chr1_3	five_prime_UTR	51526625	51526635	51526625	ID=Msa0124060-mRNA-1:five_prime_utr;Parent=Msa0124060-mRNA-1
chr1_3	CDS	51526517	51526624	51526517	ID=Msa0124060-mRNA-1:cds;Parent=Msa0124060-mRNA-1
chr1_3	CDS	51525226	51525522	51525226	ID=Msa0124060-mRNA-1:cds;Parent=Msa0124060-mRNA-1
chr1_3	three_prime_UTR	51524903	51525225	51524903	ID=Msa0124060-mRNA-1:three_prime_utr;Parent=Msa0124060-mRNA-1

Gene Sequence

>Msa0124060

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>Msa0124060

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE*