AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124060 MtrunA17_Chr1g0184901 100.000 134 0 0 1 134 1 134 8.52e-94 266
Msa0124060 MtrunA17_Chr1g0211651 91.473 129 11 0 6 134 3 131 4.51e-82 236
Msa0124060 MtrunA17_Chr1g0148961 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0124060 MtrunA17_Chr1g0148951 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0124060 MtrunA17_Chr4g0024701 73.881 134 15 1 1 134 1 114 8.12e-55 167
Msa0124060 MtrunA17_Chr2g0319191 64.545 110 37 2 24 132 14 122 8.07e-40 130
Msa0124060 MtrunA17_Chr2g0319181 64.545 110 37 2 24 132 14 122 9.64e-40 129
Msa0124060 MtrunA17_Chr7g0268831 59.016 122 47 3 11 130 6 126 2.14e-39 129
Msa0124060 MtrunA17_Chr7g0273351 59.664 119 45 3 14 130 6 123 1.14e-38 127
Msa0124060 MtrunA17_Chr7g0259151 55.118 127 50 3 10 130 1 126 4.17e-38 126
Msa0124060 MtrunA17_Chr7g0273331 59.664 119 45 3 14 130 62 179 9.34e-38 127
Msa0124060 MtrunA17_Chr7g0272611 55.752 113 48 2 19 130 19 130 4.70e-36 120
Msa0124060 MtrunA17_Chr4g0031041 60.550 109 41 2 23 130 15 122 9.62e-36 120
Msa0124060 MtrunA17_Chr2g0327951 60.550 109 41 2 23 130 56 163 1.27e-35 121
Msa0124060 MtrunA17_Chr4g0035621 62.500 104 37 2 28 130 26 128 6.80e-35 118
Msa0124060 MtrunA17_Chr4g0032301 60.952 105 39 2 27 130 25 128 1.02e-34 117
Msa0124060 MtrunA17_Chr4g0031001 61.538 104 38 2 28 130 26 128 1.22e-34 117
Msa0124060 MtrunA17_Chr4g0031651 60.952 105 39 2 27 130 25 128 1.29e-34 117
Msa0124060 MtrunA17_Chr2g0327931 60.952 105 39 2 27 130 24 127 1.42e-34 117
Msa0124060 MtrunA17_Chr8g0379311 58.716 109 43 2 27 134 25 132 2.01e-34 117
Msa0124060 MtrunA17_Chr7g0273341 52.101 119 43 5 14 130 45 151 2.33e-27 99.4
Msa0124060 MtrunA17_Chr4g0031031 62.687 67 24 1 55 120 17 83 1.30e-20 80.9
Msa0124060 MtrunA17_Chr6g0449661 45.283 106 47 4 27 130 86 182 7.69e-19 78.2
Msa0124060 MtrunA17_Chr3g0119971 44.340 106 48 4 27 130 81 177 2.52e-18 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124060 AT3G54560.1 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0124060 AT3G54560.2 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0124060 AT2G38810.1 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0124060 AT2G38810.4 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0124060 AT2G38810.3 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0124060 AT2G38810.2 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0124060 AT1G52740.1 82.836 134 23 0 1 134 1 134 2.15e-71 210
Msa0124060 AT4G13570.1 78.022 91 20 0 34 124 28 118 3.31e-47 148
Msa0124060 AT4G13570.2 78.889 90 19 0 35 124 35 124 6.73e-47 148
Msa0124060 AT3G20670.1 64.545 110 37 2 24 132 14 122 6.60e-40 130
Msa0124060 AT4G27230.2 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0124060 AT4G27230.1 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0124060 AT5G54640.1 64.545 110 37 2 24 132 14 122 1.17e-39 130
Msa0124060 AT1G51060.1 63.889 108 37 2 24 130 14 120 4.32e-39 128
Msa0124060 AT5G02560.1 60.177 113 43 2 23 134 21 132 1.17e-38 128
Msa0124060 AT1G08880.1 59.829 117 44 3 14 128 9 124 1.62e-38 127
Msa0124060 AT1G54690.1 59.829 117 44 3 14 128 9 124 2.02e-38 127
Msa0124060 AT5G27670.1 60.177 113 43 2 19 130 18 129 9.53e-37 123
Msa0124060 AT5G59870.1 59.633 109 42 2 23 130 21 128 7.61e-35 118
Msa0124060 AT5G02560.2 49.635 137 43 3 23 134 21 156 2.98e-33 115

Find 58 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAAAGAAAATAATGAATA+TGG 0.226044 1_3:+51526843 None:intergenic
GGCATTTGCAGCTTGCTATC+AGG 0.247896 1_3:-51525328 Msa0124060:CDS
AGCAACAGCTGCAGTGTATT+TGG 0.282329 1_3:-51525438 Msa0124060:CDS
TTCTTCTCGTGCTGGAATTC+AGG 0.284428 1_3:-51526516 Msa0124060:intron
TTGGGGTTAATTGTTTACTA+TGG 0.303404 1_3:-51524911 Msa0124060:three_prime_UTR
AAAGCAAAGAAATCATTCTT+TGG 0.335830 1_3:+51525214 None:intergenic
GGTATTCTTATGTGGTCATT+TGG 0.337403 1_3:-51525063 Msa0124060:three_prime_UTR
TTGATATGGTAGTGTGTAAA+TGG 0.352891 1_3:-51525087 Msa0124060:three_prime_UTR
AGTGTATTTGGCATCCATTC+TGG 0.360664 1_3:-51525426 Msa0124060:CDS
CAGCAATTGTTCCCTTGATA+AGG 0.371937 1_3:+51525285 None:intergenic
CTTATCAAGGGAACAATTGC+TGG 0.372156 1_3:-51525284 Msa0124060:CDS
CTCCGACACGTCCATTAGCT+TGG 0.422586 1_3:+51525459 None:intergenic
TTCTTATGTGGTCATTTGGA+TGG 0.435634 1_3:-51525059 Msa0124060:three_prime_UTR
AGCAATTGTTCCCTTGATAA+GGG 0.441041 1_3:+51525286 None:intergenic
GAAAAGAAAATAATGAATAT+GGG 0.441414 1_3:+51526844 None:intergenic
AAGCAAAGAGTCCAAGCTAA+TGG 0.447447 1_3:-51525470 Msa0124060:CDS
TTAGATATTTGTGATGCTGT+TGG 0.467051 1_3:-51525021 Msa0124060:three_prime_UTR
TTTATTATGACTTGAAATGA+TGG 0.467990 1_3:-51525146 Msa0124060:three_prime_UTR
ACTTCTCGTTCTTCTCGTGC+TGG 0.468244 1_3:-51526524 Msa0124060:CDS
AAATGCTAGCAAAGATTTGA+AGG 0.477120 1_3:-51525369 Msa0124060:CDS
GACTGCTGAAGTTCTTGAGC+TGG 0.480553 1_3:-51525396 Msa0124060:CDS
CTCTTTGCTTCAGCTGTCTG+TGG 0.485476 1_3:+51525483 None:intergenic
GCATTTGCAGCTTGCTATCA+GGG 0.487874 1_3:-51525327 Msa0124060:CDS
GCTGAAGTTCTTGAGCTGGC+TGG 0.490963 1_3:-51525392 Msa0124060:CDS
TCAGGTGATTAAGCAATGGC+AGG 0.495436 1_3:-51526617 Msa0124060:intron
ATGGCAGGAAAAGGAGGAAA+AGG 0.512104 1_3:-51526602 Msa0124060:CDS
GGAACTTGATACCCTTATCA+AGG 0.512125 1_3:-51525297 Msa0124060:CDS
TTTGATCTGTGCAATGGTTG+GGG 0.512671 1_3:-51524928 Msa0124060:three_prime_UTR
TCAAAACAAACAAAACAAGC+AGG 0.513874 1_3:+51524946 None:intergenic
GATTAAGCAATGGCAGGAAA+AGG 0.523608 1_3:-51526611 Msa0124060:exon
CTTGTCTTTGTTAGCCGCGG+TGG 0.527714 1_3:+51526562 None:intergenic
GAAATGATGGTGATCACAGT+AGG 0.529426 1_3:-51525133 Msa0124060:three_prime_UTR
GTCCTTGTCTTTGTTAGCCG+CGG 0.546728 1_3:+51526559 None:intergenic
GCAAAGATTTGAAGGTGAAG+AGG 0.563947 1_3:-51525361 Msa0124060:CDS
ATGGTGGTTGTAGTTTCCTG+TGG 0.571350 1_3:-51525513 Msa0124060:intron
GGTTGTAGTTTCCTGTGGGT+AGG 0.590033 1_3:-51525508 Msa0124060:intron
AGCAGTCAGATACTCCAGAA+TGG 0.591746 1_3:+51525412 None:intergenic
ATAGCAAGCTGCAAATGCCT+TGG 0.592261 1_3:+51525332 None:intergenic
GCTTGCTATCAGGGGAGATG+AGG 0.593400 1_3:-51525318 Msa0124060:CDS
TGGTGGTTGTAGTTTCCTGT+GGG 0.595697 1_3:-51525512 Msa0124060:intron
GTCCAAGCTAATGGACGTGT+CGG 0.596665 1_3:-51525461 Msa0124060:CDS
TAAATGGTGGTATTCTTATG+TGG 0.602361 1_3:-51525071 Msa0124060:three_prime_UTR
AAAAGAAAATAATGAATATG+GGG 0.603363 1_3:+51526845 None:intergenic
TAAGCAATGGCAGGAAAAGG+AGG 0.606722 1_3:-51526608 Msa0124060:exon
AGCACGAGAAGAACGAGAAG+TGG 0.609010 1_3:+51526526 None:intergenic
CATTTGCAGCTTGCTATCAG+GGG 0.612353 1_3:-51525326 Msa0124060:CDS
AAATGATGGTGATCACAGTA+GGG 0.620882 1_3:-51525132 Msa0124060:three_prime_UTR
AAGGGAACAATTGCTGGTGG+TGG 0.621502 1_3:-51525278 Msa0124060:CDS
CAAAACAAACAAAACAAGCA+GGG 0.623971 1_3:+51524947 None:intergenic
GAACTTGATACCCTTATCAA+GGG 0.630061 1_3:-51525296 Msa0124060:CDS
ATCAAGGACTTGTGGATGTG+AGG 0.631787 1_3:+51525248 None:intergenic
GCACGAGAAGAACGAGAAGT+GGG 0.642443 1_3:+51526527 None:intergenic
CACCGCGGCTAACAAAGACA+AGG 0.646788 1_3:-51526561 Msa0124060:CDS
TGTCTGTGGATCCTACCCAC+AGG 0.647982 1_3:+51525497 None:intergenic
ATCAAGGGAACAATTGCTGG+TGG 0.659902 1_3:-51525281 Msa0124060:CDS
ATATGGTAGTGTGTAAATGG+TGG 0.704651 1_3:-51525084 Msa0124060:three_prime_UTR
AGGTGAAGAGGATTACACCA+AGG 0.739394 1_3:-51525349 Msa0124060:CDS
CGTTGCAGCGAAAACCACCG+CGG 0.789660 1_3:-51526576 Msa0124060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAATAATGAATATG+GGG + chr1_3:51524918-51524937 None:intergenic 15.0%
!! GAAAAGAAAATAATGAATAT+GGG + chr1_3:51524919-51524938 None:intergenic 15.0%
!!! TTTTTCTGTGTAAATTTTTT+AGG - chr1_3:51525412-51525431 Msa0124060:CDS 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG - chr1_3:51525413-51525432 Msa0124060:CDS 15.0%
!!! TCTATGTTCTTTAATTTTTT+AGG - chr1_3:51525538-51525557 Msa0124060:intron 15.0%
!!! CTATGTTCTTTAATTTTTTA+GGG - chr1_3:51525539-51525558 Msa0124060:intron 15.0%
!!! ATAAGTTTAATTTCGATTTA+AGG - chr1_3:51525914-51525933 Msa0124060:intron 15.0%
!! AAAAGAAAATAATGAATATG+GGG + chr1_3:51524918-51524937 None:intergenic 15.0%
!! GAAAAGAAAATAATGAATAT+GGG + chr1_3:51524919-51524938 None:intergenic 15.0%
!!! TTTTTCTGTGTAAATTTTTT+AGG - chr1_3:51525412-51525431 Msa0124060:CDS 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG - chr1_3:51525413-51525432 Msa0124060:CDS 15.0%
!!! TCTATGTTCTTTAATTTTTT+AGG - chr1_3:51525538-51525557 Msa0124060:intron 15.0%
!!! CTATGTTCTTTAATTTTTTA+GGG - chr1_3:51525539-51525558 Msa0124060:intron 15.0%
!!! ATAAGTTTAATTTCGATTTA+AGG - chr1_3:51525914-51525933 Msa0124060:intron 15.0%
!! CGAAAAGAAAATAATGAATA+TGG + chr1_3:51524920-51524939 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG - chr1_3:51525300-51525319 Msa0124060:CDS 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG - chr1_3:51525301-51525320 Msa0124060:CDS 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG - chr1_3:51525544-51525563 Msa0124060:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG - chr1_3:51525545-51525564 Msa0124060:intron 20.0%
!!! CAAATGTTCTTTTATTTAAC+CGG - chr1_3:51526074-51526093 Msa0124060:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG + chr1_3:51526155-51526174 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG + chr1_3:51526194-51526213 None:intergenic 20.0%
!! ATTAACTGTAAAATTTGCAA+TGG - chr1_3:51526228-51526247 Msa0124060:intron 20.0%
!! TTTATTATGACTTGAAATGA+TGG - chr1_3:51526614-51526633 Msa0124060:exon 20.0%
!!! GAATTTTGAATGAATTGATA+TGG - chr1_3:51526659-51526678 Msa0124060:intron 20.0%
!! CGAAAAGAAAATAATGAATA+TGG + chr1_3:51524920-51524939 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG - chr1_3:51525300-51525319 Msa0124060:CDS 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG - chr1_3:51525301-51525320 Msa0124060:CDS 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG - chr1_3:51525544-51525563 Msa0124060:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG - chr1_3:51525545-51525564 Msa0124060:intron 20.0%
!!! CAAATGTTCTTTTATTTAAC+CGG - chr1_3:51526074-51526093 Msa0124060:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG + chr1_3:51526155-51526174 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG + chr1_3:51526194-51526213 None:intergenic 20.0%
!! ATTAACTGTAAAATTTGCAA+TGG - chr1_3:51526228-51526247 Msa0124060:intron 20.0%
!! TTTATTATGACTTGAAATGA+TGG - chr1_3:51526614-51526633 Msa0124060:exon 20.0%
!!! GAATTTTGAATGAATTGATA+TGG - chr1_3:51526659-51526678 Msa0124060:intron 20.0%
! AAATCGAAATTACGAAGAAA+GGG + chr1_3:51525287-51525306 None:intergenic 25.0%
! AAAATCGAAATTACGAAGAA+AGG + chr1_3:51525288-51525307 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG - chr1_3:51525306-51525325 Msa0124060:CDS 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG - chr1_3:51525307-51525326 Msa0124060:CDS 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG - chr1_3:51525418-51525437 Msa0124060:CDS 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG - chr1_3:51525419-51525438 Msa0124060:CDS 25.0%
!! TTTAGAATTAAACCCTAGAT+GGG + chr1_3:51525480-51525499 None:intergenic 25.0%
! AAGAAAATACATGTTATCAG+GGG + chr1_3:51525661-51525680 None:intergenic 25.0%
! CAAGAAAATACATGTTATCA+GGG + chr1_3:51525662-51525681 None:intergenic 25.0%
! ACAAGAAAATACATGTTATC+AGG + chr1_3:51525663-51525682 None:intergenic 25.0%
!!! GTAACTTTAGAATTAGTGTA+TGG - chr1_3:51525982-51526001 Msa0124060:intron 25.0%
! ATCTTAACACTATTAGTGTA+TGG - chr1_3:51526047-51526066 Msa0124060:intron 25.0%
! TGAGATTAAATTATTGCCTT+TGG - chr1_3:51526109-51526128 Msa0124060:intron 25.0%
! CAAAAATAACAGAGGAAAAT+AGG + chr1_3:51526186-51526205 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG + chr1_3:51526549-51526568 None:intergenic 25.0%
!!! TGGTGCTGTTTATTTTAATT+AGG - chr1_3:51526582-51526601 Msa0124060:CDS 25.0%
!!! GGTGCTGTTTATTTTAATTA+GGG - chr1_3:51526583-51526602 Msa0124060:CDS 25.0%
! AAATCGAAATTACGAAGAAA+GGG + chr1_3:51525287-51525306 None:intergenic 25.0%
! AAAATCGAAATTACGAAGAA+AGG + chr1_3:51525288-51525307 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG - chr1_3:51525306-51525325 Msa0124060:CDS 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG - chr1_3:51525307-51525326 Msa0124060:CDS 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG - chr1_3:51525418-51525437 Msa0124060:CDS 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG - chr1_3:51525419-51525438 Msa0124060:CDS 25.0%
!! TTTAGAATTAAACCCTAGAT+GGG + chr1_3:51525480-51525499 None:intergenic 25.0%
! AAGAAAATACATGTTATCAG+GGG + chr1_3:51525661-51525680 None:intergenic 25.0%
! CAAGAAAATACATGTTATCA+GGG + chr1_3:51525662-51525681 None:intergenic 25.0%
! ACAAGAAAATACATGTTATC+AGG + chr1_3:51525663-51525682 None:intergenic 25.0%
!!! GTAACTTTAGAATTAGTGTA+TGG - chr1_3:51525982-51526001 Msa0124060:intron 25.0%
! ATCTTAACACTATTAGTGTA+TGG - chr1_3:51526047-51526066 Msa0124060:intron 25.0%
! TGAGATTAAATTATTGCCTT+TGG - chr1_3:51526109-51526128 Msa0124060:intron 25.0%
! CAAAAATAACAGAGGAAAAT+AGG + chr1_3:51526186-51526205 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG + chr1_3:51526549-51526568 None:intergenic 25.0%
!!! TGGTGCTGTTTATTTTAATT+AGG - chr1_3:51526582-51526601 Msa0124060:CDS 25.0%
!!! GGTGCTGTTTATTTTAATTA+GGG - chr1_3:51526583-51526602 Msa0124060:CDS 25.0%
TGTTTAAACGAAGAAGAGAA+GGG + chr1_3:51525044-51525063 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG + chr1_3:51525045-51525064 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG - chr1_3:51525139-51525158 Msa0124060:three_prime_UTR 30.0%
CGAAGAAAGGGAAAAAAAAA+GGG + chr1_3:51525275-51525294 None:intergenic 30.0%
ACGAAGAAAGGGAAAAAAAA+AGG + chr1_3:51525276-51525295 None:intergenic 30.0%
TTAGACGATAATTCTCATCT+AGG - chr1_3:51525344-51525363 Msa0124060:CDS 30.0%
TAGACGATAATTCTCATCTA+GGG - chr1_3:51525345-51525364 Msa0124060:CDS 30.0%
!! CTTTAGAATTAAACCCTAGA+TGG + chr1_3:51525481-51525500 None:intergenic 30.0%
! TTTGAAACAGAATTAAGCGA+TGG - chr1_3:51525568-51525587 Msa0124060:intron 30.0%
TTTATAATCAACCCCCAATT+GGG + chr1_3:51525604-51525623 None:intergenic 30.0%
!!! GCAGAGAAGTAATTTTTTGT+TGG - chr1_3:51525885-51525904 Msa0124060:intron 30.0%
AACATCTACATGAAATCCAA+AGG + chr1_3:51526128-51526147 None:intergenic 30.0%
AACTGTAAAATTTGCAATGG+TGG - chr1_3:51526231-51526250 Msa0124060:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG - chr1_3:51526391-51526410 Msa0124060:intron 30.0%
! TTGATATGGTAGTGTGTAAA+TGG - chr1_3:51526673-51526692 Msa0124060:intron 30.0%
TAAATGGTGGTATTCTTATG+TGG - chr1_3:51526689-51526708 Msa0124060:intron 30.0%
TTAGATATTTGTGATGCTGT+TGG - chr1_3:51526739-51526758 Msa0124060:intron 30.0%
CAAAACAAACAAAACAAGCA+GGG + chr1_3:51526816-51526835 None:intergenic 30.0%
TCAAAACAAACAAAACAAGC+AGG + chr1_3:51526817-51526836 None:intergenic 30.0%
TTGGGGTTAATTGTTTACTA+TGG - chr1_3:51526849-51526868 Msa0124060:five_prime_UTR 30.0%
TGTTTAAACGAAGAAGAGAA+GGG + chr1_3:51525044-51525063 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG + chr1_3:51525045-51525064 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG - chr1_3:51525139-51525158 Msa0124060:three_prime_UTR 30.0%
CGAAGAAAGGGAAAAAAAAA+GGG + chr1_3:51525275-51525294 None:intergenic 30.0%
ACGAAGAAAGGGAAAAAAAA+AGG + chr1_3:51525276-51525295 None:intergenic 30.0%
TTAGACGATAATTCTCATCT+AGG - chr1_3:51525344-51525363 Msa0124060:CDS 30.0%
TAGACGATAATTCTCATCTA+GGG - chr1_3:51525345-51525364 Msa0124060:CDS 30.0%
!! CTTTAGAATTAAACCCTAGA+TGG + chr1_3:51525481-51525500 None:intergenic 30.0%
! TTTGAAACAGAATTAAGCGA+TGG - chr1_3:51525568-51525587 Msa0124060:intron 30.0%
TTTATAATCAACCCCCAATT+GGG + chr1_3:51525604-51525623 None:intergenic 30.0%
!!! GCAGAGAAGTAATTTTTTGT+TGG - chr1_3:51525885-51525904 Msa0124060:intron 30.0%
AACATCTACATGAAATCCAA+AGG + chr1_3:51526128-51526147 None:intergenic 30.0%
AACTGTAAAATTTGCAATGG+TGG - chr1_3:51526231-51526250 Msa0124060:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG - chr1_3:51526391-51526410 Msa0124060:intron 30.0%
! TTGATATGGTAGTGTGTAAA+TGG - chr1_3:51526673-51526692 Msa0124060:intron 30.0%
TAAATGGTGGTATTCTTATG+TGG - chr1_3:51526689-51526708 Msa0124060:intron 30.0%
TTAGATATTTGTGATGCTGT+TGG - chr1_3:51526739-51526758 Msa0124060:intron 30.0%
CAAAACAAACAAAACAAGCA+GGG + chr1_3:51526816-51526835 None:intergenic 30.0%
TCAAAACAAACAAAACAAGC+AGG + chr1_3:51526817-51526836 None:intergenic 30.0%
TTGGGGTTAATTGTTTACTA+TGG - chr1_3:51526849-51526868 Msa0124060:five_prime_UTR 30.0%
GAAAAGTAGAAGAGAAACCT+TGG + chr1_3:51525022-51525041 None:intergenic 35.0%
! TAGTTTTCAGATACCCATCT+AGG - chr1_3:51525464-51525483 Msa0124060:CDS 35.0%
! AGTTTTCAGATACCCATCTA+GGG - chr1_3:51525465-51525484 Msa0124060:CDS 35.0%
! ACAGAATTAAGCGATGGTTT+TGG - chr1_3:51525574-51525593 Msa0124060:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG - chr1_3:51525575-51525594 Msa0124060:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG + chr1_3:51525605-51525624 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG + chr1_3:51526096-51526115 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG - chr1_3:51526464-51526483 Msa0124060:intron 35.0%
AGCAATTGTTCCCTTGATAA+GGG + chr1_3:51526477-51526496 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG + chr1_3:51526523-51526542 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG + chr1_3:51526531-51526550 None:intergenic 35.0%
!! TCTTTGCTTTTGTTGTCATG+TGG - chr1_3:51526559-51526578 Msa0124060:CDS 35.0%
! AAATGATGGTGATCACAGTA+GGG - chr1_3:51526628-51526647 Msa0124060:intron 35.0%
! ATATGGTAGTGTGTAAATGG+TGG - chr1_3:51526676-51526695 Msa0124060:intron 35.0%
GGTATTCTTATGTGGTCATT+TGG - chr1_3:51526697-51526716 Msa0124060:intron 35.0%
TTCTTATGTGGTCATTTGGA+TGG - chr1_3:51526701-51526720 Msa0124060:intron 35.0%
!!! GTTTGTTTTGATCTGTGCAA+TGG - chr1_3:51526826-51526845 Msa0124060:five_prime_UTR 35.0%
! TTTTGATCTGTGCAATGGTT+GGG - chr1_3:51526831-51526850 Msa0124060:five_prime_UTR 35.0%
GAAAAGTAGAAGAGAAACCT+TGG + chr1_3:51525022-51525041 None:intergenic 35.0%
! TAGTTTTCAGATACCCATCT+AGG - chr1_3:51525464-51525483 Msa0124060:CDS 35.0%
! AGTTTTCAGATACCCATCTA+GGG - chr1_3:51525465-51525484 Msa0124060:CDS 35.0%
! ACAGAATTAAGCGATGGTTT+TGG - chr1_3:51525574-51525593 Msa0124060:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG - chr1_3:51525575-51525594 Msa0124060:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG + chr1_3:51525605-51525624 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG + chr1_3:51526096-51526115 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG - chr1_3:51526464-51526483 Msa0124060:intron 35.0%
AGCAATTGTTCCCTTGATAA+GGG + chr1_3:51526477-51526496 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG + chr1_3:51526523-51526542 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG + chr1_3:51526531-51526550 None:intergenic 35.0%
!! TCTTTGCTTTTGTTGTCATG+TGG - chr1_3:51526559-51526578 Msa0124060:CDS 35.0%
! AAATGATGGTGATCACAGTA+GGG - chr1_3:51526628-51526647 Msa0124060:intron 35.0%
! ATATGGTAGTGTGTAAATGG+TGG - chr1_3:51526676-51526695 Msa0124060:intron 35.0%
GGTATTCTTATGTGGTCATT+TGG - chr1_3:51526697-51526716 Msa0124060:intron 35.0%
TTCTTATGTGGTCATTTGGA+TGG - chr1_3:51526701-51526720 Msa0124060:intron 35.0%
!!! GTTTGTTTTGATCTGTGCAA+TGG - chr1_3:51526826-51526845 Msa0124060:five_prime_UTR 35.0%
! TTTTGATCTGTGCAATGGTT+GGG - chr1_3:51526831-51526850 Msa0124060:five_prime_UTR 35.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG - chr1_3:51525125-51525144 Msa0124060:three_prime_UTR 40.0%
GATTAAGCAATGGCAGGAAA+AGG - chr1_3:51525149-51525168 Msa0124060:three_prime_UTR 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG - chr1_3:51525319-51525338 Msa0124060:CDS 40.0%
!!! ATGGTTTTGGGATACCCAAT+TGG - chr1_3:51525587-51525606 Msa0124060:intron 40.0%
!!! TGGTTTTGGGATACCCAATT+GGG - chr1_3:51525588-51525607 Msa0124060:intron 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG - chr1_3:51526290-51526309 Msa0124060:intron 40.0%
AGTGTATTTGGCATCCATTC+TGG - chr1_3:51526334-51526353 Msa0124060:intron 40.0%
GCAAAGATTTGAAGGTGAAG+AGG - chr1_3:51526399-51526418 Msa0124060:intron 40.0%
GGAACTTGATACCCTTATCA+AGG - chr1_3:51526463-51526482 Msa0124060:intron 40.0%
CAGCAATTGTTCCCTTGATA+AGG + chr1_3:51526478-51526497 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG - chr1_3:51526476-51526495 Msa0124060:intron 40.0%
!! TTGCTTTTGTTGTCATGTGG+TGG - chr1_3:51526562-51526581 Msa0124060:CDS 40.0%
! GAAATGATGGTGATCACAGT+AGG - chr1_3:51526627-51526646 Msa0124060:intron 40.0%
!! GTTTTGATCTGTGCAATGGT+TGG - chr1_3:51526830-51526849 Msa0124060:five_prime_UTR 40.0%
TTTGATCTGTGCAATGGTTG+GGG - chr1_3:51526832-51526851 Msa0124060:five_prime_UTR 40.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG - chr1_3:51525125-51525144 Msa0124060:three_prime_UTR 40.0%
GATTAAGCAATGGCAGGAAA+AGG - chr1_3:51525149-51525168 Msa0124060:three_prime_UTR 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG - chr1_3:51525319-51525338 Msa0124060:CDS 40.0%
!!! ATGGTTTTGGGATACCCAAT+TGG - chr1_3:51525587-51525606 Msa0124060:intron 40.0%
!!! TGGTTTTGGGATACCCAATT+GGG - chr1_3:51525588-51525607 Msa0124060:intron 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG - chr1_3:51526290-51526309 Msa0124060:intron 40.0%
AGTGTATTTGGCATCCATTC+TGG - chr1_3:51526334-51526353 Msa0124060:intron 40.0%
GCAAAGATTTGAAGGTGAAG+AGG - chr1_3:51526399-51526418 Msa0124060:intron 40.0%
GGAACTTGATACCCTTATCA+AGG - chr1_3:51526463-51526482 Msa0124060:intron 40.0%
CAGCAATTGTTCCCTTGATA+AGG + chr1_3:51526478-51526497 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG - chr1_3:51526476-51526495 Msa0124060:intron 40.0%
!! TTGCTTTTGTTGTCATGTGG+TGG - chr1_3:51526562-51526581 Msa0124060:CDS 40.0%
! GAAATGATGGTGATCACAGT+AGG - chr1_3:51526627-51526646 Msa0124060:intron 40.0%
!! GTTTTGATCTGTGCAATGGT+TGG - chr1_3:51526830-51526849 Msa0124060:five_prime_UTR 40.0%
TTTGATCTGTGCAATGGTTG+GGG - chr1_3:51526832-51526851 Msa0124060:five_prime_UTR 40.0%
! TTCATTGACGCGTTTTGCTC+TGG - chr1_3:51525115-51525134 Msa0124060:three_prime_UTR 45.0%
TCAGGTGATTAAGCAATGGC+AGG - chr1_3:51525143-51525162 Msa0124060:three_prime_UTR 45.0%
TAAGCAATGGCAGGAAAAGG+AGG - chr1_3:51525152-51525171 Msa0124060:three_prime_UTR 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG - chr1_3:51525158-51525177 Msa0124060:three_prime_UTR 45.0%
TTCTTCTCGTGCTGGAATTC+AGG - chr1_3:51525244-51525263 Msa0124060:CDS 45.0%
!!! GGTTTTGGGATACCCAATTG+GGG - chr1_3:51525589-51525608 Msa0124060:intron 45.0%
!!! GTTTTGGGATACCCAATTGG+GGG - chr1_3:51525590-51525609 Msa0124060:intron 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG - chr1_3:51526247-51526266 Msa0124060:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG - chr1_3:51526248-51526267 Msa0124060:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG - chr1_3:51526322-51526341 Msa0124060:intron 45.0%
AGCAGTCAGATACTCCAGAA+TGG + chr1_3:51526351-51526370 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG - chr1_3:51526411-51526430 Msa0124060:intron 45.0%
ATAGCAAGCTGCAAATGCCT+TGG + chr1_3:51526431-51526450 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG - chr1_3:51526433-51526452 Msa0124060:intron 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG - chr1_3:51526434-51526453 Msa0124060:intron 45.0%
ATCAAGGGAACAATTGCTGG+TGG - chr1_3:51526479-51526498 Msa0124060:intron 45.0%
ATCAAGGACTTGTGGATGTG+AGG + chr1_3:51526515-51526534 None:intergenic 45.0%
! TTCATTGACGCGTTTTGCTC+TGG - chr1_3:51525115-51525134 Msa0124060:three_prime_UTR 45.0%
TCAGGTGATTAAGCAATGGC+AGG - chr1_3:51525143-51525162 Msa0124060:three_prime_UTR 45.0%
TAAGCAATGGCAGGAAAAGG+AGG - chr1_3:51525152-51525171 Msa0124060:three_prime_UTR 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG - chr1_3:51525158-51525177 Msa0124060:three_prime_UTR 45.0%
TTCTTCTCGTGCTGGAATTC+AGG - chr1_3:51525244-51525263 Msa0124060:CDS 45.0%
!!! GGTTTTGGGATACCCAATTG+GGG - chr1_3:51525589-51525608 Msa0124060:intron 45.0%
!!! GTTTTGGGATACCCAATTGG+GGG - chr1_3:51525590-51525609 Msa0124060:intron 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG - chr1_3:51526247-51526266 Msa0124060:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG - chr1_3:51526248-51526267 Msa0124060:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG - chr1_3:51526322-51526341 Msa0124060:intron 45.0%
AGCAGTCAGATACTCCAGAA+TGG + chr1_3:51526351-51526370 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG - chr1_3:51526411-51526430 Msa0124060:intron 45.0%
ATAGCAAGCTGCAAATGCCT+TGG + chr1_3:51526431-51526450 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG - chr1_3:51526433-51526452 Msa0124060:intron 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG - chr1_3:51526434-51526453 Msa0124060:intron 45.0%
ATCAAGGGAACAATTGCTGG+TGG - chr1_3:51526479-51526498 Msa0124060:intron 45.0%
ATCAAGGACTTGTGGATGTG+AGG + chr1_3:51526515-51526534 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr1_3:51525809-51525828 Msa0124060:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr1_3:51525809-51525828 Msa0124060:intron 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:51524980-51524999 None:intergenic 50.0%
CTCTCTCTCTCTCGATTCCA+AGG - chr1_3:51525002-51525021 Msa0124060:three_prime_UTR 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG + chr1_3:51525204-51525223 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG + chr1_3:51525236-51525255 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG + chr1_3:51525237-51525256 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG - chr1_3:51525236-51525255 Msa0124060:CDS 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG - chr1_3:51526252-51526271 Msa0124060:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG + chr1_3:51526280-51526299 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG - chr1_3:51526299-51526318 Msa0124060:intron 50.0%
GACTGCTGAAGTTCTTGAGC+TGG - chr1_3:51526364-51526383 Msa0124060:intron 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG - chr1_3:51526432-51526451 Msa0124060:intron 50.0%
AAGGGAACAATTGCTGGTGG+TGG - chr1_3:51526482-51526501 Msa0124060:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:51524980-51524999 None:intergenic 50.0%
CTCTCTCTCTCTCGATTCCA+AGG - chr1_3:51525002-51525021 Msa0124060:three_prime_UTR 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG + chr1_3:51525204-51525223 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG + chr1_3:51525236-51525255 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG + chr1_3:51525237-51525256 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG - chr1_3:51525236-51525255 Msa0124060:CDS 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG - chr1_3:51526252-51526271 Msa0124060:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG + chr1_3:51526280-51526299 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG - chr1_3:51526299-51526318 Msa0124060:intron 50.0%
GACTGCTGAAGTTCTTGAGC+TGG - chr1_3:51526364-51526383 Msa0124060:intron 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG - chr1_3:51526432-51526451 Msa0124060:intron 50.0%
AAGGGAACAATTGCTGGTGG+TGG - chr1_3:51526482-51526501 Msa0124060:intron 50.0%
CTTGTCTTTGTTAGCCGCGG+TGG + chr1_3:51525201-51525220 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG - chr1_3:51525199-51525218 Msa0124060:three_prime_UTR 55.0%
TGTCTGTGGATCCTACCCAC+AGG + chr1_3:51526266-51526285 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG + chr1_3:51526304-51526323 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG - chr1_3:51526368-51526387 Msa0124060:intron 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG - chr1_3:51526442-51526461 Msa0124060:intron 55.0%
CTTGTCTTTGTTAGCCGCGG+TGG + chr1_3:51525201-51525220 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG - chr1_3:51525199-51525218 Msa0124060:three_prime_UTR 55.0%
TGTCTGTGGATCCTACCCAC+AGG + chr1_3:51526266-51526285 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG + chr1_3:51526304-51526323 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG - chr1_3:51526368-51526387 Msa0124060:intron 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG - chr1_3:51526442-51526461 Msa0124060:intron 55.0%
CGTTGCAGCGAAAACCACCG+CGG - chr1_3:51525184-51525203 Msa0124060:three_prime_UTR 60.0%
CGTTGCAGCGAAAACCACCG+CGG - chr1_3:51525184-51525203 Msa0124060:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51524903 51526879 51524903 ID=Msa0124060;Name=Msa0124060
chr1_3 mRNA 51524903 51526879 51524903 ID=Msa0124060-mRNA-1;Parent=Msa0124060;Name=Msa0124060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|0.5|0.33|3|323|134
chr1_3 exon 51524903 51525522 51524903 ID=Msa0124060-mRNA-1:exon:15749;Parent=Msa0124060-mRNA-1
chr1_3 exon 51526517 51526635 51526517 ID=Msa0124060-mRNA-1:exon:15748;Parent=Msa0124060-mRNA-1
chr1_3 exon 51526759 51526879 51526759 ID=Msa0124060-mRNA-1:exon:15747;Parent=Msa0124060-mRNA-1
chr1_3 five_prime_UTR 51526759 51526879 51526759 ID=Msa0124060-mRNA-1:five_prime_utr;Parent=Msa0124060-mRNA-1
chr1_3 five_prime_UTR 51526625 51526635 51526625 ID=Msa0124060-mRNA-1:five_prime_utr;Parent=Msa0124060-mRNA-1
chr1_3 CDS 51526517 51526624 51526517 ID=Msa0124060-mRNA-1:cds;Parent=Msa0124060-mRNA-1
chr1_3 CDS 51525226 51525522 51525226 ID=Msa0124060-mRNA-1:cds;Parent=Msa0124060-mRNA-1
chr1_3 three_prime_UTR 51524903 51525225 51524903 ID=Msa0124060-mRNA-1:three_prime_utr;Parent=Msa0124060-mRNA-1
Gene Sequence

>Msa0124060

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>Msa0124060

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE*