Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162510 | XP_024625917.1 | 87.263 | 369 | 26 | 6 | 1 | 357 | 1 | 360 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162510 | sp|Q10LZ1|PHR1_ORYSJ | 48.905 | 137 | 63 | 5 | 203 | 337 | 208 | 339 | 7.31e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162510 | G7KVB9 | 86.992 | 369 | 26 | 7 | 1 | 357 | 1 | 359 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1162510 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1115960 | Msa1162510 | 0.800157 | 1.644076e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162510 | MtrunA17_Chr7g0258531 | 86.992 | 369 | 26 | 7 | 1 | 357 | 1 | 359 | 0.0 | 634 |
| Msa1162510 | MtrunA17_Chr1g0175071 | 40.663 | 332 | 161 | 11 | 35 | 355 | 9 | 315 | 2.00e-55 | 184 |
| Msa1162510 | MtrunA17_Chr1g0175091 | 43.860 | 171 | 85 | 4 | 183 | 343 | 220 | 389 | 1.43e-30 | 120 |
| Msa1162510 | MtrunA17_Chr7g0258551 | 45.522 | 134 | 66 | 4 | 214 | 342 | 212 | 343 | 9.58e-25 | 103 |
| Msa1162510 | MtrunA17_Chr1g0190301 | 44.526 | 137 | 72 | 2 | 204 | 337 | 165 | 300 | 1.98e-23 | 100 |
| Msa1162510 | MtrunA17_Chr7g0261911 | 39.535 | 172 | 75 | 7 | 182 | 337 | 229 | 387 | 9.66e-23 | 99.0 |
| Msa1162510 | MtrunA17_Chr7g0274471 | 44.275 | 131 | 61 | 3 | 214 | 337 | 218 | 343 | 3.23e-22 | 97.1 |
| Msa1162510 | MtrunA17_Chr2g0291021 | 42.647 | 136 | 66 | 4 | 214 | 341 | 49 | 180 | 3.67e-21 | 92.8 |
| Msa1162510 | MtrunA17_Chr7g0254981 | 35.065 | 154 | 87 | 3 | 197 | 341 | 33 | 182 | 4.91e-20 | 89.0 |
| Msa1162510 | MtrunA17_Chr5g0409731 | 36.806 | 144 | 76 | 2 | 214 | 342 | 25 | 168 | 4.77e-17 | 80.5 |
| Msa1162510 | MtrunA17_Chr8g0356501 | 37.795 | 127 | 74 | 3 | 214 | 335 | 37 | 163 | 2.55e-16 | 79.0 |
| Msa1162510 | MtrunA17_Chr2g0310011 | 37.008 | 127 | 75 | 3 | 214 | 335 | 35 | 161 | 2.03e-15 | 76.6 |
| Msa1162510 | MtrunA17_Chr6g0461641 | 34.752 | 141 | 74 | 3 | 213 | 335 | 41 | 181 | 2.31e-15 | 76.6 |
| Msa1162510 | MtrunA17_Chr2g0321461 | 33.108 | 148 | 71 | 3 | 213 | 335 | 44 | 188 | 1.06e-14 | 74.7 |
| Msa1162510 | MtrunA17_Chr7g0242521 | 36.641 | 131 | 75 | 3 | 210 | 334 | 9 | 137 | 3.32e-14 | 71.2 |
| Msa1162510 | MtrunA17_Chr1g0197171 | 37.008 | 127 | 76 | 3 | 214 | 338 | 44 | 168 | 5.64e-14 | 71.6 |
| Msa1162510 | MtrunA17_Chr2g0290991 | 36.434 | 129 | 77 | 2 | 214 | 338 | 39 | 166 | 1.40e-13 | 70.9 |
| Msa1162510 | MtrunA17_Chr8g0379121 | 60.377 | 53 | 21 | 0 | 216 | 268 | 113 | 165 | 8.95e-13 | 68.9 |
| Msa1162510 | MtrunA17_Chr1g0175081 | 43.182 | 88 | 44 | 3 | 198 | 284 | 5 | 87 | 1.49e-12 | 63.5 |
| Msa1162510 | MtrunA17_Chr4g0042451 | 31.852 | 135 | 79 | 3 | 214 | 335 | 17 | 151 | 3.00e-12 | 67.0 |
| Msa1162510 | MtrunA17_Chr3g0095611 | 53.704 | 54 | 25 | 0 | 216 | 269 | 21 | 74 | 1.47e-11 | 63.2 |
| Msa1162510 | MtrunA17_Chr2g0288601 | 43.243 | 74 | 38 | 1 | 191 | 264 | 52 | 121 | 1.65e-11 | 61.2 |
| Msa1162510 | MtrunA17_Chr2g0320231 | 56.604 | 53 | 23 | 0 | 216 | 268 | 99 | 151 | 2.49e-11 | 64.3 |
| Msa1162510 | MtrunA17_Chr1g0162931 | 34.677 | 124 | 64 | 4 | 216 | 323 | 20 | 142 | 2.89e-11 | 63.5 |
| Msa1162510 | MtrunA17_Chr7g0243081 | 56.604 | 53 | 23 | 0 | 216 | 268 | 73 | 125 | 4.56e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162510 | AT5G06800.2 | 42.000 | 150 | 79 | 2 | 210 | 351 | 186 | 335 | 6.25e-26 | 107 |
| Msa1162510 | AT5G06800.1 | 44.521 | 146 | 76 | 4 | 210 | 351 | 186 | 330 | 1.23e-25 | 106 |
| Msa1162510 | AT2G01060.1 | 39.506 | 162 | 85 | 4 | 202 | 356 | 3 | 158 | 2.80e-24 | 101 |
| Msa1162510 | AT3G13040.3 | 38.150 | 173 | 89 | 4 | 186 | 345 | 213 | 380 | 6.24e-23 | 99.8 |
| Msa1162510 | AT3G13040.1 | 38.150 | 173 | 89 | 4 | 186 | 345 | 213 | 380 | 6.24e-23 | 99.8 |
| Msa1162510 | AT3G13040.2 | 38.150 | 173 | 89 | 4 | 186 | 345 | 213 | 380 | 6.24e-23 | 99.8 |
| Msa1162510 | AT4G28610.1 | 42.000 | 150 | 75 | 4 | 194 | 337 | 208 | 351 | 2.15e-22 | 97.8 |
| Msa1162510 | AT5G29000.2 | 40.559 | 143 | 76 | 4 | 202 | 337 | 219 | 359 | 3.34e-22 | 97.4 |
| Msa1162510 | AT5G29000.1 | 40.559 | 143 | 76 | 4 | 202 | 337 | 176 | 316 | 3.90e-22 | 96.7 |
| Msa1162510 | AT5G29000.3 | 40.559 | 143 | 76 | 4 | 202 | 337 | 176 | 316 | 3.90e-22 | 96.7 |
| Msa1162510 | AT3G04450.1 | 41.497 | 147 | 73 | 5 | 212 | 347 | 236 | 380 | 4.20e-22 | 97.4 |
| Msa1162510 | AT3G04450.4 | 41.497 | 147 | 73 | 5 | 212 | 347 | 196 | 340 | 4.42e-22 | 96.7 |
| Msa1162510 | AT3G04450.2 | 41.497 | 147 | 73 | 5 | 212 | 347 | 196 | 340 | 4.42e-22 | 96.7 |
| Msa1162510 | AT4G13640.1 | 36.765 | 136 | 72 | 3 | 214 | 335 | 37 | 172 | 7.12e-18 | 83.2 |
| Msa1162510 | AT1G79430.2 | 39.370 | 127 | 72 | 3 | 214 | 335 | 34 | 160 | 1.35e-17 | 83.6 |
| Msa1162510 | AT1G69580.2 | 35.099 | 151 | 76 | 3 | 214 | 342 | 34 | 184 | 2.83e-16 | 79.3 |
| Msa1162510 | AT3G24120.1 | 36.029 | 136 | 73 | 2 | 214 | 335 | 41 | 176 | 2.84e-16 | 79.0 |
| Msa1162510 | AT1G69580.1 | 35.762 | 151 | 74 | 4 | 214 | 342 | 34 | 183 | 2.91e-16 | 79.3 |
| Msa1162510 | AT4G13640.2 | 35.971 | 139 | 72 | 4 | 214 | 335 | 37 | 175 | 4.59e-16 | 78.2 |
| Msa1162510 | AT2G20400.1 | 35.616 | 146 | 86 | 2 | 214 | 354 | 231 | 373 | 8.01e-16 | 78.6 |
| Msa1162510 | AT5G06800.3 | 61.667 | 60 | 21 | 1 | 210 | 267 | 186 | 245 | 1.74e-15 | 76.3 |
| Msa1162510 | AT2G20400.2 | 34.722 | 144 | 91 | 1 | 214 | 354 | 231 | 374 | 2.28e-15 | 77.0 |
| Msa1162510 | AT5G18240.1 | 34.286 | 140 | 75 | 3 | 213 | 335 | 44 | 183 | 2.92e-15 | 77.0 |
| Msa1162510 | AT5G18240.4 | 34.286 | 140 | 75 | 3 | 213 | 335 | 44 | 183 | 2.92e-15 | 77.0 |
| Msa1162510 | AT3G04030.3 | 34.286 | 140 | 75 | 3 | 213 | 335 | 44 | 183 | 6.71e-15 | 75.9 |
| Msa1162510 | AT3G24120.2 | 35.252 | 139 | 73 | 3 | 214 | 335 | 41 | 179 | 1.52e-14 | 73.9 |
| Msa1162510 | AT5G29000.4 | 41.111 | 90 | 46 | 1 | 202 | 291 | 219 | 301 | 3.25e-14 | 72.8 |
| Msa1162510 | AT3G04450.3 | 51.724 | 58 | 28 | 0 | 212 | 269 | 236 | 293 | 2.12e-13 | 70.5 |
| Msa1162510 | AT2G42660.1 | 60.377 | 53 | 21 | 0 | 216 | 268 | 52 | 104 | 2.31e-13 | 69.7 |
| Msa1162510 | AT3G12730.1 | 54.098 | 61 | 28 | 0 | 214 | 274 | 23 | 83 | 3.97e-13 | 68.6 |
| Msa1162510 | AT5G18240.5 | 33.571 | 140 | 74 | 4 | 213 | 335 | 44 | 181 | 5.87e-13 | 70.1 |
| Msa1162510 | AT2G06020.1 | 31.387 | 137 | 80 | 3 | 139 | 267 | 9 | 139 | 1.94e-12 | 67.8 |
| Msa1162510 | AT3G04030.2 | 32.857 | 140 | 76 | 4 | 213 | 335 | 44 | 182 | 3.04e-12 | 67.8 |
| Msa1162510 | AT4G04605.1 | 47.619 | 63 | 32 | 1 | 216 | 278 | 16 | 77 | 3.85e-12 | 65.5 |
| Msa1162510 | AT2G40260.1 | 54.717 | 53 | 24 | 0 | 216 | 268 | 84 | 136 | 1.85e-11 | 65.5 |
| Msa1162510 | AT5G18240.2 | 30.556 | 144 | 78 | 4 | 213 | 334 | 44 | 187 | 3.56e-11 | 64.3 |
| Msa1162510 | AT5G18240.3 | 30.556 | 144 | 78 | 4 | 213 | 334 | 44 | 187 | 3.56e-11 | 64.3 |
| Msa1162510 | AT1G14600.1 | 45.455 | 77 | 38 | 1 | 197 | 269 | 2 | 78 | 4.35e-11 | 63.2 |
| Msa1162510 | AT4G04555.1 | 54.902 | 51 | 23 | 0 | 218 | 268 | 18 | 68 | 5.82e-11 | 59.3 |
| Msa1162510 | AT5G42630.2 | 40.506 | 79 | 45 | 1 | 193 | 269 | 82 | 160 | 7.75e-11 | 62.0 |
| Msa1162510 | AT4G04580.1 | 32.727 | 110 | 60 | 2 | 216 | 325 | 16 | 111 | 7.78e-11 | 60.8 |
| Msa1162510 | AT2G38300.1 | 56.604 | 53 | 23 | 0 | 216 | 268 | 56 | 108 | 8.41e-11 | 63.2 |
| Msa1162510 | AT3G04030.1 | 32.520 | 123 | 66 | 3 | 213 | 318 | 44 | 166 | 9.92e-11 | 63.2 |
Find 61 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAATTGACCTGTTATT+TGG | 0.089954 | 7_4:+53226305 | None:intergenic |
| AAGCAGACTCCTCAACTTTA+TGG | 0.179376 | 7_4:-53227345 | Msa1162510:CDS |
| CATACATCTTTGACAAATAT+TGG | 0.255208 | 7_4:+53228701 | None:intergenic |
| CTTCTAACAACTCTGCTTCT+AGG | 0.281074 | 7_4:-53227311 | Msa1162510:CDS |
| AAGTATTTCGCAACAGTTAG+AGG | 0.311657 | 7_4:-53226570 | Msa1162510:intron |
| AAACAATTGACCTGTTATTT+GGG | 0.315634 | 7_4:+53226306 | None:intergenic |
| CAAACATCTCATGATGGTTT+TGG | 0.318369 | 7_4:-53228538 | Msa1162510:CDS |
| ATTGGAGGGTCTGTTATCTT+TGG | 0.328987 | 7_4:+53228412 | None:intergenic |
| TCATGTTAAAAGCCATTTGC+AGG | 0.345777 | 7_4:-53227062 | Msa1162510:intron |
| ACGCATGCATAAAGCTTTGC+AGG | 0.361361 | 7_4:-53226915 | Msa1162510:CDS |
| GTGATTCCTCAATTTGCTTA+AGG | 0.361437 | 7_4:+53226618 | None:intergenic |
| TTCAAGGGGCTTCTCATCAA+TGG | 0.375794 | 7_4:+53228183 | None:intergenic |
| AGCAACCTAGTTAAGGTTGT+TGG | 0.383263 | 7_4:-53228649 | Msa1162510:CDS |
| TTCTCTGAAAAGAAATTTCA+AGG | 0.402613 | 7_4:+53228167 | None:intergenic |
| AGGAATTAGCAACCTAGTTA+AGG | 0.406924 | 7_4:-53228656 | Msa1162510:CDS |
| TGTAGTGACAATGTTGTTGC+AGG | 0.413465 | 7_4:+53228573 | None:intergenic |
| TGTGTTCTGATCCAACAATT+TGG | 0.429748 | 7_4:+53228620 | None:intergenic |
| GCAACCTAGTTAAGGTTGTT+GGG | 0.430881 | 7_4:-53228648 | Msa1162510:CDS |
| TAGGTTGCTAATTCCTATGT+AGG | 0.440997 | 7_4:+53228663 | None:intergenic |
| CAATATTTGTCAAAGATGTA+TGG | 0.442799 | 7_4:-53228700 | Msa1162510:CDS |
| CTTTGACAAATATTGGTACA+TGG | 0.450936 | 7_4:+53228708 | None:intergenic |
| GTTGGGTCAGACCAAATTGT+TGG | 0.464581 | 7_4:-53228631 | Msa1162510:CDS |
| CAAAGATGTATGGAACTCAA+TGG | 0.475646 | 7_4:-53228690 | Msa1162510:CDS |
| GAGGATGAGATTGAAGTTCC+TGG | 0.496762 | 7_4:-53228454 | Msa1162510:CDS |
| AAAGATGTATGGAACTCAAT+GGG | 0.496984 | 7_4:-53228689 | Msa1162510:CDS |
| TCTGTTCTATGTCCTTCCTC+AGG | 0.498706 | 7_4:+53226796 | None:intergenic |
| ATGCTGAATTGTCAAGCCTA+TGG | 0.501729 | 7_4:-53228391 | Msa1162510:CDS |
| TTGTTGCAGGGTGACTTGAT+TGG | 0.508916 | 7_4:+53228586 | None:intergenic |
| CAAGGTCAAACATCTCATGA+TGG | 0.511209 | 7_4:-53228544 | Msa1162510:CDS |
| GAACCAACCAAAGAAAATCA+TGG | 0.514020 | 7_4:-53226350 | Msa1162510:CDS |
| TGTAAAATTATCTCCTCCAT+AGG | 0.514916 | 7_4:+53228375 | None:intergenic |
| CTGACCCAACAACCTTAACT+AGG | 0.516049 | 7_4:+53228644 | None:intergenic |
| TAGCAGCCTTAAGCAAATTG+AGG | 0.522396 | 7_4:-53226624 | Msa1162510:CDS |
| GCTTGACAATTCAGCATTGG+AGG | 0.527222 | 7_4:+53228397 | None:intergenic |
| CTCTGAAAAGAAATTTCAAG+GGG | 0.530710 | 7_4:+53228169 | None:intergenic |
| CATGTAAAAGAAGAGTAAGA+TGG | 0.531937 | 7_4:-53227278 | Msa1162510:CDS |
| AATCATGGACACAACGAGAA+AGG | 0.532795 | 7_4:-53226335 | Msa1162510:CDS |
| TCTCTGAAAAGAAATTTCAA+GGG | 0.533832 | 7_4:+53228168 | None:intergenic |
| AGAAGCAGAGTTGTTAGAAG+TGG | 0.539987 | 7_4:+53227314 | None:intergenic |
| TAGGCTTGACAATTCAGCAT+TGG | 0.547239 | 7_4:+53228394 | None:intergenic |
| AGATTCATCAACAGAGTACA+AGG | 0.551613 | 7_4:+53228333 | None:intergenic |
| AATTGCAGAGGCAAAGCCTA+AGG | 0.561046 | 7_4:-53227125 | Msa1162510:intron |
| ATGATAATCGTTGATCACCT+TGG | 0.567335 | 7_4:-53227231 | Msa1162510:CDS |
| ATCATATCTAGTATAGCCTT+AGG | 0.576046 | 7_4:+53227109 | None:intergenic |
| ACTCAATGGGAATCCTACAT+AGG | 0.576742 | 7_4:-53228676 | Msa1162510:CDS |
| CTTGACAATTCAGCATTGGA+GGG | 0.587253 | 7_4:+53228398 | None:intergenic |
| ATAATCGTTGATCACCTTGG+TGG | 0.592004 | 7_4:-53227228 | Msa1162510:CDS |
| TTAAGCAAATTGAGGAATCA+CGG | 0.605256 | 7_4:-53226616 | Msa1162510:CDS |
| CGCATGCATAAAGCTTTGCA+GGG | 0.606639 | 7_4:-53226914 | Msa1162510:intron |
| CTGAATTGTCAAGCCTATGG+AGG | 0.616055 | 7_4:-53228388 | Msa1162510:CDS |
| AAGAAGAGTAAGATGGACAG+AGG | 0.623246 | 7_4:-53227271 | Msa1162510:CDS |
| ATCACGGCAGTTGCATCTAG+AGG | 0.629262 | 7_4:-53226600 | Msa1162510:CDS |
| GCACACATTCCATAAAGTTG+AGG | 0.636332 | 7_4:+53227336 | None:intergenic |
| CTTTCAGAAAGACCTGAGGA+AGG | 0.638784 | 7_4:-53226808 | Msa1162510:intron |
| ATGAGATTGAAGTTCCTGGT+TGG | 0.646002 | 7_4:-53228450 | Msa1162510:CDS |
| AGGTGAAGAATATTATGATG+AGG | 0.647413 | 7_4:-53228473 | Msa1162510:CDS |
| GTAGTGACAATGTTGTTGCA+GGG | 0.658470 | 7_4:+53228574 | None:intergenic |
| CAAGGAGTTTGTGAACTGAG+AGG | 0.666646 | 7_4:+53228351 | None:intergenic |
| AACTGATCAAAACACCAACC+AGG | 0.670764 | 7_4:+53228436 | None:intergenic |
| TTATCTTTCAGAAAGACCTG+AGG | 0.675030 | 7_4:-53226812 | Msa1162510:intron |
| ACTTACTTTCTGGACCACCA+AGG | 0.699661 | 7_4:+53227214 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAACAAATAAAAACA+AGG | + | chr7_4:53228576-53228595 | None:intergenic | 10.0% |
| !! | AAAAATAACAAATAAAAACA+AGG | + | chr7_4:53228576-53228595 | None:intergenic | 10.0% |
| !! | ATCTAATACTATAATTAAAC+AGG | + | chr7_4:53227043-53227062 | None:intergenic | 15.0% |
| !!! | CATGGATTTTTTTTTTTTAA+TGG | - | chr7_4:53227090-53227109 | Msa1162510:CDS | 15.0% |
| !! | TGAATCTAATTATGAAATTT+AGG | - | chr7_4:53227227-53227246 | Msa1162510:CDS | 15.0% |
| !! | GAATCTAATTATGAAATTTA+GGG | - | chr7_4:53227228-53227247 | Msa1162510:CDS | 15.0% |
| !! | TCTAATAAAATTGATTAAAG+TGG | - | chr7_4:53227309-53227328 | Msa1162510:CDS | 15.0% |
| !! | AAAACTAAAAAGAAAATCAA+TGG | - | chr7_4:53227365-53227384 | Msa1162510:CDS | 15.0% |
| !! | TTACTAGTAATCTATTTATT+CGG | - | chr7_4:53227514-53227533 | Msa1162510:intron | 15.0% |
| !! | AGGAAAATAAACAAATAAAA+AGG | + | chr7_4:53227604-53227623 | None:intergenic | 15.0% |
| !! | AAATTATTGAAATTGTTGAA+TGG | + | chr7_4:53228001-53228020 | None:intergenic | 15.0% |
| !! | ATCTAATACTATAATTAAAC+AGG | + | chr7_4:53227043-53227062 | None:intergenic | 15.0% |
| !!! | CATGGATTTTTTTTTTTTAA+TGG | - | chr7_4:53227090-53227109 | Msa1162510:CDS | 15.0% |
| !! | TGAATCTAATTATGAAATTT+AGG | - | chr7_4:53227227-53227246 | Msa1162510:CDS | 15.0% |
| !! | GAATCTAATTATGAAATTTA+GGG | - | chr7_4:53227228-53227247 | Msa1162510:CDS | 15.0% |
| !! | TCTAATAAAATTGATTAAAG+TGG | - | chr7_4:53227309-53227328 | Msa1162510:CDS | 15.0% |
| !! | AAAACTAAAAAGAAAATCAA+TGG | - | chr7_4:53227365-53227384 | Msa1162510:CDS | 15.0% |
| !! | TTACTAGTAATCTATTTATT+CGG | - | chr7_4:53227514-53227533 | Msa1162510:intron | 15.0% |
| !! | AGGAAAATAAACAAATAAAA+AGG | + | chr7_4:53227604-53227623 | None:intergenic | 15.0% |
| !! | AAATTATTGAAATTGTTGAA+TGG | + | chr7_4:53228001-53228020 | None:intergenic | 15.0% |
| !!! | ACTAACATTACTTTTGATTT+TGG | + | chr7_4:53226528-53226547 | None:intergenic | 20.0% |
| !!! | AAAAGTAATGTTAGTTTTCA+AGG | - | chr7_4:53226533-53226552 | Msa1162510:intron | 20.0% |
| !!! | AACAATTCATCATGTTTTTT+GGG | + | chr7_4:53226809-53226828 | None:intergenic | 20.0% |
| !!! | AAACAATTCATCATGTTTTT+TGG | + | chr7_4:53226810-53226829 | None:intergenic | 20.0% |
| !! | AAAAACATGATGAATTGTTT+AGG | - | chr7_4:53226810-53226829 | Msa1162510:intron | 20.0% |
| !! | CATTTCATATATAATTCAGA+TGG | + | chr7_4:53226932-53226951 | None:intergenic | 20.0% |
| !!! | AAGAATACTGTAACTTTTTT+TGG | + | chr7_4:53227007-53227026 | None:intergenic | 20.0% |
| !! | AAATCCATGAAATACTTAAA+AGG | + | chr7_4:53227079-53227098 | None:intergenic | 20.0% |
| !! | AATTAGATTCATTGCATATA+TGG | + | chr7_4:53227218-53227237 | None:intergenic | 20.0% |
| !!! | TCACATAAACATTCTTTTAA+CGG | - | chr7_4:53227332-53227351 | Msa1162510:CDS | 20.0% |
| !!! | TAGTTGGGAATTTTTTTTAA+AGG | - | chr7_4:53227408-53227427 | Msa1162510:intron | 20.0% |
| !! | TACTAGTAATCTATTTATTC+GGG | - | chr7_4:53227515-53227534 | Msa1162510:intron | 20.0% |
| !! | TTAGTTAATTACTTACTTTC+TGG | + | chr7_4:53227825-53227844 | None:intergenic | 20.0% |
| !! | AATATACAATTATGCTTTGA+TGG | - | chr7_4:53228480-53228499 | Msa1162510:intron | 20.0% |
| !!! | ACTAACATTACTTTTGATTT+TGG | + | chr7_4:53226528-53226547 | None:intergenic | 20.0% |
| !!! | AAAAGTAATGTTAGTTTTCA+AGG | - | chr7_4:53226533-53226552 | Msa1162510:intron | 20.0% |
| !!! | AACAATTCATCATGTTTTTT+GGG | + | chr7_4:53226809-53226828 | None:intergenic | 20.0% |
| !!! | AAACAATTCATCATGTTTTT+TGG | + | chr7_4:53226810-53226829 | None:intergenic | 20.0% |
| !! | AAAAACATGATGAATTGTTT+AGG | - | chr7_4:53226810-53226829 | Msa1162510:intron | 20.0% |
| !! | CATTTCATATATAATTCAGA+TGG | + | chr7_4:53226932-53226951 | None:intergenic | 20.0% |
| !!! | AAGAATACTGTAACTTTTTT+TGG | + | chr7_4:53227007-53227026 | None:intergenic | 20.0% |
| !! | AAATCCATGAAATACTTAAA+AGG | + | chr7_4:53227079-53227098 | None:intergenic | 20.0% |
| !! | AATTAGATTCATTGCATATA+TGG | + | chr7_4:53227218-53227237 | None:intergenic | 20.0% |
| !!! | TCACATAAACATTCTTTTAA+CGG | - | chr7_4:53227332-53227351 | Msa1162510:CDS | 20.0% |
| !!! | TAGTTGGGAATTTTTTTTAA+AGG | - | chr7_4:53227408-53227427 | Msa1162510:intron | 20.0% |
| !! | TACTAGTAATCTATTTATTC+GGG | - | chr7_4:53227515-53227534 | Msa1162510:intron | 20.0% |
| !! | TTAGTTAATTACTTACTTTC+TGG | + | chr7_4:53227825-53227844 | None:intergenic | 20.0% |
| !! | AATATACAATTATGCTTTGA+TGG | - | chr7_4:53228480-53228499 | Msa1162510:intron | 20.0% |
| ! | CATACATCTTTGACAAATAT+TGG | + | chr7_4:53226328-53226347 | None:intergenic | 25.0% |
| ! | CAATATTTGTCAAAGATGTA+TGG | - | chr7_4:53226326-53226345 | Msa1162510:CDS | 25.0% |
| !! | ATTGTCACTACAAATTTTCA+AGG | - | chr7_4:53226464-53226483 | Msa1162510:intron | 25.0% |
| !! | GAATATAGTAATTTTCAGTC+TGG | - | chr7_4:53226758-53226777 | Msa1162510:intron | 25.0% |
| !! | TCTCTGAAAAGAAATTTCAA+GGG | + | chr7_4:53226861-53226880 | None:intergenic | 25.0% |
| !! | TTCTCTGAAAAGAAATTTCA+AGG | + | chr7_4:53226862-53226881 | None:intergenic | 25.0% |
| !! | AATTTCTTTTCAGAGAACTA+AGG | - | chr7_4:53226865-53226884 | Msa1162510:intron | 25.0% |
| !!! | TAGTCCTTTTAAGTATTTCA+TGG | - | chr7_4:53227072-53227091 | Msa1162510:CDS | 25.0% |
| !!! | AAATTTAGGGTTTTGTGAAA+GGG | - | chr7_4:53227241-53227260 | Msa1162510:CDS | 25.0% |
| ! | ATTAGAAAAACACGTTAGAT+TGG | + | chr7_4:53227295-53227314 | None:intergenic | 25.0% |
| ! | AAGTTATGAGACTTATAGTT+GGG | - | chr7_4:53227393-53227412 | Msa1162510:intron | 25.0% |
| ! | TGGATTATAGCTTATTAGAA+AGG | + | chr7_4:53227624-53227643 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTCTTCTGATTAC+TGG | - | chr7_4:53228344-53228363 | Msa1162510:CDS | 25.0% |
| ! | CAAATAAAAACAAGGTTGTA+AGG | + | chr7_4:53228568-53228587 | None:intergenic | 25.0% |
| ! | CATACATCTTTGACAAATAT+TGG | + | chr7_4:53226328-53226347 | None:intergenic | 25.0% |
| ! | CAATATTTGTCAAAGATGTA+TGG | - | chr7_4:53226326-53226345 | Msa1162510:CDS | 25.0% |
| !! | ATTGTCACTACAAATTTTCA+AGG | - | chr7_4:53226464-53226483 | Msa1162510:intron | 25.0% |
| !! | GAATATAGTAATTTTCAGTC+TGG | - | chr7_4:53226758-53226777 | Msa1162510:intron | 25.0% |
| !! | TCTCTGAAAAGAAATTTCAA+GGG | + | chr7_4:53226861-53226880 | None:intergenic | 25.0% |
| !! | TTCTCTGAAAAGAAATTTCA+AGG | + | chr7_4:53226862-53226881 | None:intergenic | 25.0% |
| !! | AATTTCTTTTCAGAGAACTA+AGG | - | chr7_4:53226865-53226884 | Msa1162510:intron | 25.0% |
| !!! | TAGTCCTTTTAAGTATTTCA+TGG | - | chr7_4:53227072-53227091 | Msa1162510:CDS | 25.0% |
| !!! | AAATTTAGGGTTTTGTGAAA+GGG | - | chr7_4:53227241-53227260 | Msa1162510:CDS | 25.0% |
| ! | ATTAGAAAAACACGTTAGAT+TGG | + | chr7_4:53227295-53227314 | None:intergenic | 25.0% |
| ! | AAGTTATGAGACTTATAGTT+GGG | - | chr7_4:53227393-53227412 | Msa1162510:intron | 25.0% |
| ! | TGGATTATAGCTTATTAGAA+AGG | + | chr7_4:53227624-53227643 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTCTTCTGATTAC+TGG | - | chr7_4:53228344-53228363 | Msa1162510:CDS | 25.0% |
| ! | CAAATAAAAACAAGGTTGTA+AGG | + | chr7_4:53228568-53228587 | None:intergenic | 25.0% |
| AAAGATGTATGGAACTCAAT+GGG | - | chr7_4:53226337-53226356 | Msa1162510:CDS | 30.0% | |
| AGGTGAAGAATATTATGATG+AGG | - | chr7_4:53226553-53226572 | Msa1162510:intron | 30.0% | |
| TGTAAAATTATCTCCTCCAT+AGG | + | chr7_4:53226654-53226673 | None:intergenic | 30.0% | |
| ! | CTCTGAAAAGAAATTTCAAG+GGG | + | chr7_4:53226860-53226879 | None:intergenic | 30.0% |
| TGGTTTCATCTATTTGTGAA+TGG | - | chr7_4:53227110-53227129 | Msa1162510:CDS | 30.0% | |
| !! | GAAATTTAGGGTTTTGTGAA+AGG | - | chr7_4:53227240-53227259 | Msa1162510:CDS | 30.0% |
| ! | AAACATTCTTTTAACGGAGT+TGG | - | chr7_4:53227338-53227357 | Msa1162510:CDS | 30.0% |
| CAACTATAAGTCTCATAACT+TGG | + | chr7_4:53227394-53227413 | None:intergenic | 30.0% | |
| CAAGTTATGAGACTTATAGT+TGG | - | chr7_4:53227392-53227411 | Msa1162510:intron | 30.0% | |
| ! | CTTACTCTTCTTTTACATGT+TGG | + | chr7_4:53227747-53227766 | None:intergenic | 30.0% |
| CATGTAAAAGAAGAGTAAGA+TGG | - | chr7_4:53227748-53227767 | Msa1162510:intron | 30.0% | |
| ! | TTCACTGATTATAATTGCAG+AGG | - | chr7_4:53227889-53227908 | Msa1162510:intron | 30.0% |
| ATCATATCTAGTATAGCCTT+AGG | + | chr7_4:53227920-53227939 | None:intergenic | 30.0% | |
| ! | ATGGCTTTTAACATGAGAAA+TGG | + | chr7_4:53227960-53227979 | None:intergenic | 30.0% |
| !! | GAAATAGTTTTACCTGCAAA+TGG | + | chr7_4:53227979-53227998 | None:intergenic | 30.0% |
| ACAATGTTAGAGTCAATTAC+CGG | + | chr7_4:53228053-53228072 | None:intergenic | 30.0% | |
| ACAACACTGCTTACTTATTA+AGG | - | chr7_4:53228163-53228182 | Msa1162510:CDS | 30.0% | |
| TTAAGCAAATTGAGGAATCA+CGG | - | chr7_4:53228410-53228429 | Msa1162510:CDS | 30.0% | |
| AAAGATGTATGGAACTCAAT+GGG | - | chr7_4:53226337-53226356 | Msa1162510:CDS | 30.0% | |
| AGGTGAAGAATATTATGATG+AGG | - | chr7_4:53226553-53226572 | Msa1162510:intron | 30.0% | |
| TGTAAAATTATCTCCTCCAT+AGG | + | chr7_4:53226654-53226673 | None:intergenic | 30.0% | |
| ! | CTCTGAAAAGAAATTTCAAG+GGG | + | chr7_4:53226860-53226879 | None:intergenic | 30.0% |
| TGGTTTCATCTATTTGTGAA+TGG | - | chr7_4:53227110-53227129 | Msa1162510:CDS | 30.0% | |
| !! | GAAATTTAGGGTTTTGTGAA+AGG | - | chr7_4:53227240-53227259 | Msa1162510:CDS | 30.0% |
| ! | AAACATTCTTTTAACGGAGT+TGG | - | chr7_4:53227338-53227357 | Msa1162510:CDS | 30.0% |
| CAACTATAAGTCTCATAACT+TGG | + | chr7_4:53227394-53227413 | None:intergenic | 30.0% | |
| CAAGTTATGAGACTTATAGT+TGG | - | chr7_4:53227392-53227411 | Msa1162510:intron | 30.0% | |
| ! | CTTACTCTTCTTTTACATGT+TGG | + | chr7_4:53227747-53227766 | None:intergenic | 30.0% |
| CATGTAAAAGAAGAGTAAGA+TGG | - | chr7_4:53227748-53227767 | Msa1162510:intron | 30.0% | |
| ! | TTCACTGATTATAATTGCAG+AGG | - | chr7_4:53227889-53227908 | Msa1162510:intron | 30.0% |
| ATCATATCTAGTATAGCCTT+AGG | + | chr7_4:53227920-53227939 | None:intergenic | 30.0% | |
| ! | ATGGCTTTTAACATGAGAAA+TGG | + | chr7_4:53227960-53227979 | None:intergenic | 30.0% |
| !! | GAAATAGTTTTACCTGCAAA+TGG | + | chr7_4:53227979-53227998 | None:intergenic | 30.0% |
| ACAATGTTAGAGTCAATTAC+CGG | + | chr7_4:53228053-53228072 | None:intergenic | 30.0% | |
| ACAACACTGCTTACTTATTA+AGG | - | chr7_4:53228163-53228182 | Msa1162510:CDS | 30.0% | |
| TTAAGCAAATTGAGGAATCA+CGG | - | chr7_4:53228410-53228429 | Msa1162510:CDS | 30.0% | |
| CAAAGATGTATGGAACTCAA+TGG | - | chr7_4:53226336-53226355 | Msa1162510:CDS | 35.0% | |
| TAGGTTGCTAATTCCTATGT+AGG | + | chr7_4:53226366-53226385 | None:intergenic | 35.0% | |
| AGGAATTAGCAACCTAGTTA+AGG | - | chr7_4:53226370-53226389 | Msa1162510:CDS | 35.0% | |
| TGTGTTCTGATCCAACAATT+TGG | + | chr7_4:53226409-53226428 | None:intergenic | 35.0% | |
| ! | CAAACATCTCATGATGGTTT+TGG | - | chr7_4:53226488-53226507 | Msa1162510:intron | 35.0% |
| AGATTCATCAACAGAGTACA+AGG | + | chr7_4:53226696-53226715 | None:intergenic | 35.0% | |
| !!! | CATCATGTTTTTTGGGAAAG+TGG | + | chr7_4:53226802-53226821 | None:intergenic | 35.0% |
| TTGTGAATGGTGAATTGTGT+TGG | - | chr7_4:53227123-53227142 | Msa1162510:intron | 35.0% | |
| TGTGAATGGTGAATTGTGTT+GGG | - | chr7_4:53227124-53227143 | Msa1162510:intron | 35.0% | |
| !! | TGTTGGGTTGATTGTGATAT+GGG | - | chr7_4:53227140-53227159 | Msa1162510:intron | 35.0% |
| TTGTGATATGGGGAATAAGA+AGG | - | chr7_4:53227151-53227170 | Msa1162510:intron | 35.0% | |
| GGACAATAATGAATTGCAGA+GGG | - | chr7_4:53227262-53227281 | Msa1162510:CDS | 35.0% | |
| ATAATGAATTGCAGAGGGTA+AGG | - | chr7_4:53227267-53227286 | Msa1162510:CDS | 35.0% | |
| TAATGAATTGCAGAGGGTAA+GGG | - | chr7_4:53227268-53227287 | Msa1162510:CDS | 35.0% | |
| ! | ATTCTTTTAACGGAGTTGGA+TGG | - | chr7_4:53227342-53227361 | Msa1162510:CDS | 35.0% |
| TTTAGGCAAAATACATCGTG+CGG | + | chr7_4:53227466-53227485 | None:intergenic | 35.0% | |
| ATTTCTCCAACTCGTCAATT+AGG | - | chr7_4:53227563-53227582 | Msa1162510:intron | 35.0% | |
| CAATATCCTAATTGACGAGT+TGG | + | chr7_4:53227572-53227591 | None:intergenic | 35.0% | |
| ATCCATGACTTACTATAGTC+AGG | - | chr7_4:53227639-53227658 | Msa1162510:intron | 35.0% | |
| ATGATAATCGTTGATCACCT+TGG | - | chr7_4:53227795-53227814 | Msa1162510:intron | 35.0% | |
| TCATGTTAAAAGCCATTTGC+AGG | - | chr7_4:53227964-53227983 | Msa1162510:intron | 35.0% | |
| TTATCTTTCAGAAAGACCTG+AGG | - | chr7_4:53228214-53228233 | Msa1162510:CDS | 35.0% | |
| ! | GTGATTCCTCAATTTGCTTA+AGG | + | chr7_4:53228411-53228430 | None:intergenic | 35.0% |
| AAGTATTTCGCAACAGTTAG+AGG | - | chr7_4:53228456-53228475 | Msa1162510:CDS | 35.0% | |
| GTTGTAAGGATATACGACTT+TGG | + | chr7_4:53228554-53228573 | None:intergenic | 35.0% | |
| GAACCAACCAAAGAAAATCA+TGG | - | chr7_4:53228676-53228695 | Msa1162510:CDS | 35.0% | |
| ! | TGTCCATGATTTTCTTTGGT+TGG | + | chr7_4:53228682-53228701 | None:intergenic | 35.0% |
| ! | GTTGTGTCCATGATTTTCTT+TGG | + | chr7_4:53228686-53228705 | None:intergenic | 35.0% |
| CAAAGATGTATGGAACTCAA+TGG | - | chr7_4:53226336-53226355 | Msa1162510:CDS | 35.0% | |
| TAGGTTGCTAATTCCTATGT+AGG | + | chr7_4:53226366-53226385 | None:intergenic | 35.0% | |
| AGGAATTAGCAACCTAGTTA+AGG | - | chr7_4:53226370-53226389 | Msa1162510:CDS | 35.0% | |
| TGTGTTCTGATCCAACAATT+TGG | + | chr7_4:53226409-53226428 | None:intergenic | 35.0% | |
| ! | CAAACATCTCATGATGGTTT+TGG | - | chr7_4:53226488-53226507 | Msa1162510:intron | 35.0% |
| AGATTCATCAACAGAGTACA+AGG | + | chr7_4:53226696-53226715 | None:intergenic | 35.0% | |
| !!! | CATCATGTTTTTTGGGAAAG+TGG | + | chr7_4:53226802-53226821 | None:intergenic | 35.0% |
| TTGTGAATGGTGAATTGTGT+TGG | - | chr7_4:53227123-53227142 | Msa1162510:intron | 35.0% | |
| TGTGAATGGTGAATTGTGTT+GGG | - | chr7_4:53227124-53227143 | Msa1162510:intron | 35.0% | |
| !! | TGTTGGGTTGATTGTGATAT+GGG | - | chr7_4:53227140-53227159 | Msa1162510:intron | 35.0% |
| TTGTGATATGGGGAATAAGA+AGG | - | chr7_4:53227151-53227170 | Msa1162510:intron | 35.0% | |
| GGACAATAATGAATTGCAGA+GGG | - | chr7_4:53227262-53227281 | Msa1162510:CDS | 35.0% | |
| ATAATGAATTGCAGAGGGTA+AGG | - | chr7_4:53227267-53227286 | Msa1162510:CDS | 35.0% | |
| TAATGAATTGCAGAGGGTAA+GGG | - | chr7_4:53227268-53227287 | Msa1162510:CDS | 35.0% | |
| ! | ATTCTTTTAACGGAGTTGGA+TGG | - | chr7_4:53227342-53227361 | Msa1162510:CDS | 35.0% |
| TTTAGGCAAAATACATCGTG+CGG | + | chr7_4:53227466-53227485 | None:intergenic | 35.0% | |
| ATTTCTCCAACTCGTCAATT+AGG | - | chr7_4:53227563-53227582 | Msa1162510:intron | 35.0% | |
| CAATATCCTAATTGACGAGT+TGG | + | chr7_4:53227572-53227591 | None:intergenic | 35.0% | |
| ATCCATGACTTACTATAGTC+AGG | - | chr7_4:53227639-53227658 | Msa1162510:intron | 35.0% | |
| ATGATAATCGTTGATCACCT+TGG | - | chr7_4:53227795-53227814 | Msa1162510:intron | 35.0% | |
| TCATGTTAAAAGCCATTTGC+AGG | - | chr7_4:53227964-53227983 | Msa1162510:intron | 35.0% | |
| TTATCTTTCAGAAAGACCTG+AGG | - | chr7_4:53228214-53228233 | Msa1162510:CDS | 35.0% | |
| ! | GTGATTCCTCAATTTGCTTA+AGG | + | chr7_4:53228411-53228430 | None:intergenic | 35.0% |
| AAGTATTTCGCAACAGTTAG+AGG | - | chr7_4:53228456-53228475 | Msa1162510:CDS | 35.0% | |
| GTTGTAAGGATATACGACTT+TGG | + | chr7_4:53228554-53228573 | None:intergenic | 35.0% | |
| GAACCAACCAAAGAAAATCA+TGG | - | chr7_4:53228676-53228695 | Msa1162510:CDS | 35.0% | |
| ! | TGTCCATGATTTTCTTTGGT+TGG | + | chr7_4:53228682-53228701 | None:intergenic | 35.0% |
| ! | GTTGTGTCCATGATTTTCTT+TGG | + | chr7_4:53228686-53228705 | None:intergenic | 35.0% |
| ACTCAATGGGAATCCTACAT+AGG | - | chr7_4:53226350-53226369 | Msa1162510:CDS | 40.0% | |
| AGCAACCTAGTTAAGGTTGT+TGG | - | chr7_4:53226377-53226396 | Msa1162510:CDS | 40.0% | |
| GCAACCTAGTTAAGGTTGTT+GGG | - | chr7_4:53226378-53226397 | Msa1162510:CDS | 40.0% | |
| GTAGTGACAATGTTGTTGCA+GGG | + | chr7_4:53226455-53226474 | None:intergenic | 40.0% | |
| TGTAGTGACAATGTTGTTGC+AGG | + | chr7_4:53226456-53226475 | None:intergenic | 40.0% | |
| CAAGGTCAAACATCTCATGA+TGG | - | chr7_4:53226482-53226501 | Msa1162510:intron | 40.0% | |
| ATGAGATTGAAGTTCCTGGT+TGG | - | chr7_4:53226576-53226595 | Msa1162510:CDS | 40.0% | |
| AACTGATCAAAACACCAACC+AGG | + | chr7_4:53226593-53226612 | None:intergenic | 40.0% | |
| ATTGGAGGGTCTGTTATCTT+TGG | + | chr7_4:53226617-53226636 | None:intergenic | 40.0% | |
| ! | CTTGACAATTCAGCATTGGA+GGG | + | chr7_4:53226631-53226650 | None:intergenic | 40.0% |
| TAGGCTTGACAATTCAGCAT+TGG | + | chr7_4:53226635-53226654 | None:intergenic | 40.0% | |
| ATGCTGAATTGTCAAGCCTA+TGG | - | chr7_4:53226635-53226654 | Msa1162510:intron | 40.0% | |
| !! | GTGTTGGGTTGATTGTGATA+TGG | - | chr7_4:53227139-53227158 | Msa1162510:intron | 40.0% |
| !! | GTTGGGTTGATTGTGATATG+GGG | - | chr7_4:53227141-53227160 | Msa1162510:intron | 40.0% |
| GGGACAATAATGAATTGCAG+AGG | - | chr7_4:53227261-53227280 | Msa1162510:CDS | 40.0% | |
| ! | AGCGCTATTACGTCGATTAA+AGG | - | chr7_4:53227439-53227458 | Msa1162510:intron | 40.0% |
| ! | GCGCTATTACGTCGATTAAA+GGG | - | chr7_4:53227440-53227459 | Msa1162510:intron | 40.0% |
| ! | TTTTGCACATGCGTGACTTT+AGG | + | chr7_4:53227483-53227502 | None:intergenic | 40.0% |
| ! | GACGAGTTGGAGAAATTGTT+AGG | + | chr7_4:53227559-53227578 | None:intergenic | 40.0% |
| AGCCTGACTATAGTAAGTCA+TGG | + | chr7_4:53227644-53227663 | None:intergenic | 40.0% | |
| AAGCAGACTCCTCAACTTTA+TGG | - | chr7_4:53227681-53227700 | Msa1162510:intron | 40.0% | |
| GCACACATTCCATAAAGTTG+AGG | + | chr7_4:53227693-53227712 | None:intergenic | 40.0% | |
| AGAAGCAGAGTTGTTAGAAG+TGG | + | chr7_4:53227715-53227734 | None:intergenic | 40.0% | |
| CTTCTAACAACTCTGCTTCT+AGG | - | chr7_4:53227715-53227734 | Msa1162510:intron | 40.0% | |
| AAGAAGAGTAAGATGGACAG+AGG | - | chr7_4:53227755-53227774 | Msa1162510:intron | 40.0% | |
| ATAATCGTTGATCACCTTGG+TGG | - | chr7_4:53227798-53227817 | Msa1162510:intron | 40.0% | |
| TGTAGATCGACATTTCTGCA+CGG | + | chr7_4:53228089-53228108 | None:intergenic | 40.0% | |
| ! | TCAATTTGCTTAAGGCTGCT+AGG | + | chr7_4:53228403-53228422 | None:intergenic | 40.0% |
| TAGCAGCCTTAAGCAAATTG+AGG | - | chr7_4:53228402-53228421 | Msa1162510:CDS | 40.0% | |
| GCAACTTTCTTTGCGTCTAA+AGG | + | chr7_4:53228605-53228624 | None:intergenic | 40.0% | |
| AATCATGGACACAACGAGAA+AGG | - | chr7_4:53228691-53228710 | Msa1162510:CDS | 40.0% | |
| ACTCAATGGGAATCCTACAT+AGG | - | chr7_4:53226350-53226369 | Msa1162510:CDS | 40.0% | |
| AGCAACCTAGTTAAGGTTGT+TGG | - | chr7_4:53226377-53226396 | Msa1162510:CDS | 40.0% | |
| GCAACCTAGTTAAGGTTGTT+GGG | - | chr7_4:53226378-53226397 | Msa1162510:CDS | 40.0% | |
| GTAGTGACAATGTTGTTGCA+GGG | + | chr7_4:53226455-53226474 | None:intergenic | 40.0% | |
| TGTAGTGACAATGTTGTTGC+AGG | + | chr7_4:53226456-53226475 | None:intergenic | 40.0% | |
| CAAGGTCAAACATCTCATGA+TGG | - | chr7_4:53226482-53226501 | Msa1162510:intron | 40.0% | |
| ATGAGATTGAAGTTCCTGGT+TGG | - | chr7_4:53226576-53226595 | Msa1162510:CDS | 40.0% | |
| AACTGATCAAAACACCAACC+AGG | + | chr7_4:53226593-53226612 | None:intergenic | 40.0% | |
| ATTGGAGGGTCTGTTATCTT+TGG | + | chr7_4:53226617-53226636 | None:intergenic | 40.0% | |
| ! | CTTGACAATTCAGCATTGGA+GGG | + | chr7_4:53226631-53226650 | None:intergenic | 40.0% |
| TAGGCTTGACAATTCAGCAT+TGG | + | chr7_4:53226635-53226654 | None:intergenic | 40.0% | |
| ATGCTGAATTGTCAAGCCTA+TGG | - | chr7_4:53226635-53226654 | Msa1162510:intron | 40.0% | |
| !! | GTGTTGGGTTGATTGTGATA+TGG | - | chr7_4:53227139-53227158 | Msa1162510:intron | 40.0% |
| !! | GTTGGGTTGATTGTGATATG+GGG | - | chr7_4:53227141-53227160 | Msa1162510:intron | 40.0% |
| GGGACAATAATGAATTGCAG+AGG | - | chr7_4:53227261-53227280 | Msa1162510:CDS | 40.0% | |
| ! | AGCGCTATTACGTCGATTAA+AGG | - | chr7_4:53227439-53227458 | Msa1162510:intron | 40.0% |
| ! | GCGCTATTACGTCGATTAAA+GGG | - | chr7_4:53227440-53227459 | Msa1162510:intron | 40.0% |
| ! | TTTTGCACATGCGTGACTTT+AGG | + | chr7_4:53227483-53227502 | None:intergenic | 40.0% |
| ! | GACGAGTTGGAGAAATTGTT+AGG | + | chr7_4:53227559-53227578 | None:intergenic | 40.0% |
| AGCCTGACTATAGTAAGTCA+TGG | + | chr7_4:53227644-53227663 | None:intergenic | 40.0% | |
| AAGCAGACTCCTCAACTTTA+TGG | - | chr7_4:53227681-53227700 | Msa1162510:intron | 40.0% | |
| GCACACATTCCATAAAGTTG+AGG | + | chr7_4:53227693-53227712 | None:intergenic | 40.0% | |
| AGAAGCAGAGTTGTTAGAAG+TGG | + | chr7_4:53227715-53227734 | None:intergenic | 40.0% | |
| CTTCTAACAACTCTGCTTCT+AGG | - | chr7_4:53227715-53227734 | Msa1162510:intron | 40.0% | |
| AAGAAGAGTAAGATGGACAG+AGG | - | chr7_4:53227755-53227774 | Msa1162510:intron | 40.0% | |
| ATAATCGTTGATCACCTTGG+TGG | - | chr7_4:53227798-53227817 | Msa1162510:intron | 40.0% | |
| TGTAGATCGACATTTCTGCA+CGG | + | chr7_4:53228089-53228108 | None:intergenic | 40.0% | |
| ! | TCAATTTGCTTAAGGCTGCT+AGG | + | chr7_4:53228403-53228422 | None:intergenic | 40.0% |
| TAGCAGCCTTAAGCAAATTG+AGG | - | chr7_4:53228402-53228421 | Msa1162510:CDS | 40.0% | |
| GCAACTTTCTTTGCGTCTAA+AGG | + | chr7_4:53228605-53228624 | None:intergenic | 40.0% | |
| AATCATGGACACAACGAGAA+AGG | - | chr7_4:53228691-53228710 | Msa1162510:CDS | 40.0% | |
| CTGACCCAACAACCTTAACT+AGG | + | chr7_4:53226385-53226404 | None:intergenic | 45.0% | |
| GTTGGGTCAGACCAAATTGT+TGG | - | chr7_4:53226395-53226414 | Msa1162510:CDS | 45.0% | |
| TTGTTGCAGGGTGACTTGAT+TGG | + | chr7_4:53226443-53226462 | None:intergenic | 45.0% | |
| GAGGATGAGATTGAAGTTCC+TGG | - | chr7_4:53226572-53226591 | Msa1162510:CDS | 45.0% | |
| ! | GCTTGACAATTCAGCATTGG+AGG | + | chr7_4:53226632-53226651 | None:intergenic | 45.0% |
| CTGAATTGTCAAGCCTATGG+AGG | - | chr7_4:53226638-53226657 | Msa1162510:intron | 45.0% | |
| CAAGGAGTTTGTGAACTGAG+AGG | + | chr7_4:53226678-53226697 | None:intergenic | 45.0% | |
| TTCAAGGGGCTTCTCATCAA+TGG | + | chr7_4:53226846-53226865 | None:intergenic | 45.0% | |
| ACTTACTTTCTGGACCACCA+AGG | + | chr7_4:53227815-53227834 | None:intergenic | 45.0% | |
| AATTGCAGAGGCAAAGCCTA+AGG | - | chr7_4:53227901-53227920 | Msa1162510:intron | 45.0% | |
| TTCTGTGAAGCCTCATTTGC+CGG | - | chr7_4:53228031-53228050 | Msa1162510:intron | 45.0% | |
| GAGTCAATTACCGGCAAATG+AGG | + | chr7_4:53228044-53228063 | None:intergenic | 45.0% | |
| ACGCATGCATAAAGCTTTGC+AGG | - | chr7_4:53228111-53228130 | Msa1162510:intron | 45.0% | |
| CGCATGCATAAAGCTTTGCA+GGG | - | chr7_4:53228112-53228131 | Msa1162510:intron | 45.0% | |
| CTTTCAGAAAGACCTGAGGA+AGG | - | chr7_4:53228218-53228237 | Msa1162510:CDS | 45.0% | |
| TCTGTTCTATGTCCTTCCTC+AGG | + | chr7_4:53228233-53228252 | None:intergenic | 45.0% | |
| GCTTAAGGCTGCTAGGAAAT+AGG | + | chr7_4:53228396-53228415 | None:intergenic | 45.0% | |
| CTGACCCAACAACCTTAACT+AGG | + | chr7_4:53226385-53226404 | None:intergenic | 45.0% | |
| GTTGGGTCAGACCAAATTGT+TGG | - | chr7_4:53226395-53226414 | Msa1162510:CDS | 45.0% | |
| TTGTTGCAGGGTGACTTGAT+TGG | + | chr7_4:53226443-53226462 | None:intergenic | 45.0% | |
| GAGGATGAGATTGAAGTTCC+TGG | - | chr7_4:53226572-53226591 | Msa1162510:CDS | 45.0% | |
| ! | GCTTGACAATTCAGCATTGG+AGG | + | chr7_4:53226632-53226651 | None:intergenic | 45.0% |
| CTGAATTGTCAAGCCTATGG+AGG | - | chr7_4:53226638-53226657 | Msa1162510:intron | 45.0% | |
| CAAGGAGTTTGTGAACTGAG+AGG | + | chr7_4:53226678-53226697 | None:intergenic | 45.0% | |
| TTCAAGGGGCTTCTCATCAA+TGG | + | chr7_4:53226846-53226865 | None:intergenic | 45.0% | |
| ACTTACTTTCTGGACCACCA+AGG | + | chr7_4:53227815-53227834 | None:intergenic | 45.0% | |
| AATTGCAGAGGCAAAGCCTA+AGG | - | chr7_4:53227901-53227920 | Msa1162510:intron | 45.0% | |
| TTCTGTGAAGCCTCATTTGC+CGG | - | chr7_4:53228031-53228050 | Msa1162510:intron | 45.0% | |
| GAGTCAATTACCGGCAAATG+AGG | + | chr7_4:53228044-53228063 | None:intergenic | 45.0% | |
| ACGCATGCATAAAGCTTTGC+AGG | - | chr7_4:53228111-53228130 | Msa1162510:intron | 45.0% | |
| CGCATGCATAAAGCTTTGCA+GGG | - | chr7_4:53228112-53228131 | Msa1162510:intron | 45.0% | |
| CTTTCAGAAAGACCTGAGGA+AGG | - | chr7_4:53228218-53228237 | Msa1162510:CDS | 45.0% | |
| TCTGTTCTATGTCCTTCCTC+AGG | + | chr7_4:53228233-53228252 | None:intergenic | 45.0% | |
| GCTTAAGGCTGCTAGGAAAT+AGG | + | chr7_4:53228396-53228415 | None:intergenic | 45.0% | |
| ATCACGGCAGTTGCATCTAG+AGG | - | chr7_4:53228426-53228445 | Msa1162510:CDS | 50.0% | |
| ATCACGGCAGTTGCATCTAG+AGG | - | chr7_4:53228426-53228445 | Msa1162510:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 53226320 | 53228728 | 53226320 | ID=Msa1162510;Name=Msa1162510 |
| chr7_4 | mRNA | 53226320 | 53228728 | 53226320 | ID=Msa1162510-mRNA-1;Parent=Msa1162510;Name=Msa1162510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0.62|0.66|9|0|357 |
| chr7_4 | exon | 53228512 | 53228728 | 53228512 | ID=Msa1162510-mRNA-1:exon:15366;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53228320 | 53228493 | 53228320 | ID=Msa1162510-mRNA-1:exon:15365;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53228162 | 53228313 | 53228162 | ID=Msa1162510-mRNA-1:exon:15364;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53227220 | 53227391 | 53227220 | ID=Msa1162510-mRNA-1:exon:15363;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53227063 | 53227139 | 53227063 | ID=Msa1162510-mRNA-1:exon:15362;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53226915 | 53226954 | 53226915 | ID=Msa1162510-mRNA-1:exon:15361;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53226775 | 53226823 | 53226775 | ID=Msa1162510-mRNA-1:exon:15360;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53226571 | 53226643 | 53226571 | ID=Msa1162510-mRNA-1:exon:15359;Parent=Msa1162510-mRNA-1 |
| chr7_4 | exon | 53226320 | 53226439 | 53226320 | ID=Msa1162510-mRNA-1:exon:15358;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53228512 | 53228728 | 53228512 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53228320 | 53228493 | 53228320 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53228162 | 53228313 | 53228162 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53227220 | 53227391 | 53227220 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53227063 | 53227139 | 53227063 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53226915 | 53226954 | 53226915 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53226775 | 53226823 | 53226775 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53226571 | 53226643 | 53226571 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| chr7_4 | CDS | 53226320 | 53226439 | 53226320 | ID=Msa1162510-mRNA-1:cds;Parent=Msa1162510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
