Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162740 | XP_003625286.1 | 96.893 | 354 | 11 | 0 | 1 | 354 | 1 | 354 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162740 | sp|Q8BK64|AHSA1_MOUSE | 32.676 | 355 | 216 | 7 | 1 | 353 | 1 | 334 | 2.23e-47 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162740 | G7KW94 | 96.893 | 354 | 11 | 0 | 1 | 354 | 1 | 354 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1035230 | Msa1162740 | 0.876807 | 1.040453e-68 | -8.615850e-47 |
| Msa1162740 | Msa1292020 | 0.808333 | 3.260456e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162740 | MtrunA17_Chr7g0258891 | 96.893 | 354 | 11 | 0 | 1 | 354 | 1 | 354 | 0.0 | 701 |
| Msa1162740 | MtrunA17_Chr1g0175701 | 70.704 | 355 | 92 | 4 | 1 | 354 | 1 | 344 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162740 | AT3G12050.1 | 69.444 | 360 | 104 | 1 | 1 | 354 | 1 | 360 | 0.0 | 511 |
| Msa1162740 | AT3G12050.2 | 62.500 | 360 | 90 | 2 | 1 | 354 | 1 | 321 | 3.14e-153 | 434 |
Find 140 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGGGAAGGGGTTGATTT+TGG | 0.174539 | 7_4:-53531630 | Msa1162740:CDS |
| TAGGGTTTGGGTTGAGAGTA+TGG | 0.252741 | 7_4:-53531600 | Msa1162740:CDS |
| TTTGGAGAAGGTTAGGGTTT+GGG | 0.255145 | 7_4:-53531612 | Msa1162740:CDS |
| AATTCGTTGTTGAAGGTTAA+TGG | 0.267141 | 7_4:-53531767 | Msa1162740:CDS |
| TTCGGTTGTGGATGTGGTTT+TGG | 0.283023 | 7_4:+53532110 | None:intergenic |
| ACCTCCAAATCCTCCTTAAC+AGG | 0.344484 | 7_4:+53531566 | None:intergenic |
| TCCGATTGGGAGGAGGATTA+AGG | 0.345883 | 7_4:-53531666 | Msa1162740:CDS |
| AAATCAATCTCACTGTTTCC+TGG | 0.353923 | 7_4:-53531817 | Msa1162740:CDS |
| TGGTCCTGTTAAGGAGGATT+TGG | 0.362861 | 7_4:-53531570 | Msa1162740:CDS |
| GCCGTTGAGGATGGTGAGAT+TGG | 0.362978 | 7_4:+53531934 | None:intergenic |
| GGAGAGAAGGTTGGTGAAGA+AGG | 0.364115 | 7_4:+53531955 | None:intergenic |
| TTGTGCAGAGGTGGAGATTC+GGG | 0.367967 | 7_4:-53531226 | Msa1162740:CDS |
| AGGGAGTGAAGGGAAGGGTT+TGG | 0.383151 | 7_4:+53532135 | None:intergenic |
| GCAGAATAATGTTAATGTTC+CGG | 0.396349 | 7_4:-53531516 | Msa1162740:CDS |
| GGTTAAGAAGCCGGCGGCTC+AGG | 0.396754 | 7_4:-53531546 | Msa1162740:CDS |
| TGGTGGTTCGGTTGTGGATG+TGG | 0.409392 | 7_4:+53532104 | None:intergenic |
| ATTGTGCAGAGGTGGAGATT+CGG | 0.410427 | 7_4:-53531227 | Msa1162740:CDS |
| CCGATGTACCTGAGGAAGAT+AGG | 0.412013 | 7_4:-53529795 | Msa1162740:intron |
| CCAGGATTAGTAAGGAGGTT+GGG | 0.414479 | 7_4:-53531316 | Msa1162740:CDS |
| CTGATGAGGATCCTGATGTT+AGG | 0.418634 | 7_4:-53531709 | Msa1162740:CDS |
| TGAAGGGAATTCGTTGTTGA+AGG | 0.423056 | 7_4:-53531774 | Msa1162740:CDS |
| GCATTCTCATCAGAAATATA+CGG | 0.424227 | 7_4:+53531731 | None:intergenic |
| ATCCTTCGCTTCACCTTCCC+AGG | 0.428288 | 7_4:+53531799 | None:intergenic |
| TGCTTCACTGCCTGAGCCGC+CGG | 0.429850 | 7_4:+53531536 | None:intergenic |
| CCCCTTACGGATGTTGATGT+AGG | 0.433756 | 7_4:+53531859 | None:intergenic |
| GAAGAAGAAGGAGAGTAAGA+AGG | 0.437370 | 7_4:-53531444 | Msa1162740:CDS |
| GGCGAGAGGTGGTCCTGTTA+AGG | 0.438118 | 7_4:-53531579 | Msa1162740:CDS |
| AAGAAGAAGGAGAGTAAGAA+GGG | 0.442005 | 7_4:-53531443 | Msa1162740:CDS |
| CCCAACCTCCTTACTAATCC+TGG | 0.444744 | 7_4:+53531316 | None:intergenic |
| GGATTTGTTTGAGATATTGA+TGG | 0.445610 | 7_4:-53531375 | Msa1162740:CDS |
| GACGGAGAAGTTTAATTGTC+GGG | 0.459720 | 7_4:-53531402 | Msa1162740:CDS |
| TTGTGAACGTTAGTTCCGTC+TGG | 0.461471 | 7_4:+53532019 | None:intergenic |
| CAGGTACATCGGTATGTGTC+AGG | 0.462088 | 7_4:+53529806 | None:intergenic |
| AGAAGGAGAGTAAGAAGGGA+AGG | 0.462970 | 7_4:-53531439 | Msa1162740:CDS |
| GAAGTTTAATTGTCGGGCGA+AGG | 0.463952 | 7_4:-53531396 | Msa1162740:CDS |
| TCCTGTTAAGGAGGATTTGG+AGG | 0.465113 | 7_4:-53531567 | Msa1162740:CDS |
| CACCGTACGATGGCGAAATA+CGG | 0.466497 | 7_4:-53532076 | Msa1162740:exon |
| GGATCCTGATGTTAGGGTTA+CGG | 0.467620 | 7_4:-53531702 | Msa1162740:CDS |
| GGAAGTTGATTGTGCAGAGG+TGG | 0.472069 | 7_4:-53531235 | Msa1162740:CDS |
| GATTGATGGTGCTCAATCTC+AGG | 0.472231 | 7_4:-53531198 | Msa1162740:intron |
| ACAACAGTAACTCCTGGTTC+AGG | 0.472906 | 7_4:+53529832 | None:intergenic |
| GAGAATTGGTGGTTCGGTTG+TGG | 0.475163 | 7_4:+53532098 | None:intergenic |
| TCCTTAATCCTCCTCCCAAT+CGG | 0.476371 | 7_4:+53531665 | None:intergenic |
| TTGGTGAGGGAGTGAAGGGA+AGG | 0.478542 | 7_4:+53532129 | None:intergenic |
| TTCTCCTCCTTCTTAACAGA+AGG | 0.482815 | 7_4:+53531464 | None:intergenic |
| GCTGTTGTTGTCACCGTCGC+CGG | 0.485289 | 7_4:+53531497 | None:intergenic |
| ACGGAACTAACGTTCACAAC+TGG | 0.487614 | 7_4:-53532015 | Msa1162740:CDS |
| AGGGTTTGGTTTAAGAAAGA+AGG | 0.488806 | 7_4:+53532149 | None:intergenic |
| GTCTAGAAAGAAAAGAAGGA+TGG | 0.493647 | 7_4:+53532181 | None:intergenic |
| TTGGTTTAAGAAAGAAGGGT+TGG | 0.494106 | 7_4:+53532154 | None:intergenic |
| AATCAATCTCACTGTTTCCT+GGG | 0.495075 | 7_4:-53531816 | Msa1162740:CDS |
| CGCCGTATTTCGCCATCGTA+CGG | 0.496501 | 7_4:+53532074 | None:intergenic |
| TACGGTGAGAATTGGTGGTT+CGG | 0.499765 | 7_4:+53532092 | None:intergenic |
| AGGCTTCGCCGGTGAGGCTA+CGG | 0.500973 | 7_4:+53531879 | None:intergenic |
| CAGGGATAATCTTCCCCTTA+CGG | 0.502173 | 7_4:+53531846 | None:intergenic |
| AGATATTGATGGATGAGAAT+AGG | 0.505287 | 7_4:-53531364 | Msa1162740:CDS |
| AGAGGTGGAGATTCGGGAGC+TGG | 0.508858 | 7_4:-53531220 | Msa1162740:CDS |
| AGGATGCGATGTTTCAGAAA+GGG | 0.510988 | 7_4:-53531646 | Msa1162740:CDS |
| CATCGTACGGTGAGAATTGG+TGG | 0.511307 | 7_4:+53532087 | None:intergenic |
| TAATGTTAATGTTCCGGCGA+CGG | 0.516023 | 7_4:-53531510 | Msa1162740:CDS |
| AAAGGTCTAGAAAGAAAAGA+AGG | 0.516982 | 7_4:+53532177 | None:intergenic |
| GAGTAATGCCAGGATTAGTA+AGG | 0.519816 | 7_4:-53531324 | Msa1162740:CDS |
| CAGGATTAGTAAGGAGGTTG+GGG | 0.522251 | 7_4:-53531315 | Msa1162740:CDS |
| ATGGATGAGAATAGGTGGAA+GGG | 0.522678 | 7_4:-53531356 | Msa1162740:CDS |
| CGTAAGGGGAAGATTATCCC+TGG | 0.522864 | 7_4:-53531845 | Msa1162740:CDS |
| GGATTTGGAGGTTAAGAAGC+CGG | 0.527030 | 7_4:-53531555 | Msa1162740:CDS |
| GGGTTTGGTTTAAGAAAGAA+GGG | 0.528033 | 7_4:+53532150 | None:intergenic |
| TAAGAAGGAGGAGAAGAAGA+AGG | 0.529157 | 7_4:-53531456 | Msa1162740:CDS |
| CTAACGTTCACAACTGGCAC+TGG | 0.530672 | 7_4:-53532009 | Msa1162740:CDS |
| GTCGAGTCCTTCTGTTAAGA+AGG | 0.534928 | 7_4:-53531471 | Msa1162740:CDS |
| GATGTTGATGTAGGCTTCGC+CGG | 0.537363 | 7_4:+53531868 | None:intergenic |
| AATCTCACTGTTTCCTGGGA+AGG | 0.538242 | 7_4:-53531812 | Msa1162740:CDS |
| TGTGGTGGAGAACACTGAAA+GGG | 0.538891 | 7_4:-53529672 | Msa1162740:CDS |
| AGATTCGGGAGCTGGATTGA+TGG | 0.538981 | 7_4:-53531212 | Msa1162740:CDS |
| AAGGAAGAATATTGTGATGA+CGG | 0.539210 | 7_4:-53531420 | Msa1162740:CDS |
| TGACGGAGAAGTTTAATTGT+CGG | 0.541011 | 7_4:-53531403 | Msa1162740:CDS |
| TTGAAGATGAAAGTCCGATT+GGG | 0.541854 | 7_4:-53531679 | Msa1162740:CDS |
| TGGTGAGGGAGTGAAGGGAA+GGG | 0.543266 | 7_4:+53532130 | None:intergenic |
| CGGAGACAAACTGTCTAGAA+TGG | 0.546185 | 7_4:-53531985 | Msa1162740:CDS |
| GGATGGTGAGATTGGAGAGA+AGG | 0.546910 | 7_4:+53531942 | None:intergenic |
| GATGGATGAGAATAGGTGGA+AGG | 0.547723 | 7_4:-53531357 | Msa1162740:CDS |
| GTTGAAGATGAAAGTCCGAT+TGG | 0.549226 | 7_4:-53531680 | Msa1162740:CDS |
| GTTACCTTCGCCGTTGAGGA+TGG | 0.556749 | 7_4:+53531925 | None:intergenic |
| AGAACACTGAAAGGGGATGG+AGG | 0.557325 | 7_4:-53529664 | Msa1162740:CDS |
| CTGTGGTGGAGAACACTGAA+AGG | 0.557979 | 7_4:-53529673 | Msa1162740:CDS |
| AAAGATTAATGGATTCACAT+TGG | 0.558333 | 7_4:-53529539 | Msa1162740:three_prime_UTR |
| GAACACTGAAAGGGGATGGA+GGG | 0.559482 | 7_4:-53529663 | Msa1162740:CDS |
| AATACTAACCTATCTTCCTC+AGG | 0.560053 | 7_4:+53529787 | None:intergenic |
| AAGGATGCGATGTTTCAGAA+AGG | 0.560413 | 7_4:-53531647 | Msa1162740:CDS |
| AGCCTACATCAACATCCGTA+AGG | 0.561299 | 7_4:-53531861 | Msa1162740:CDS |
| GCCAGGATTAGTAAGGAGGT+TGG | 0.562263 | 7_4:-53531317 | Msa1162740:CDS |
| TATTGATGGATGAGAATAGG+TGG | 0.562657 | 7_4:-53531361 | Msa1162740:CDS |
| AGGTTTACAACAGTAACTCC+TGG | 0.563635 | 7_4:+53529826 | None:intergenic |
| ATGAAAGTCCGATTGGGAGG+AGG | 0.565459 | 7_4:-53531673 | Msa1162740:CDS |
| GGTGAAGCGAAGGATAATGA+AGG | 0.566763 | 7_4:-53531791 | Msa1162740:CDS |
| GCGATGTTTCAGAAAGGGAA+GGG | 0.570524 | 7_4:-53531641 | Msa1162740:CDS |
| GCAATGTGGAGTTGCAAGAA+GGG | 0.570659 | 7_4:-53531256 | Msa1162740:CDS |
| TGGAGAACACTGAAAGGGGA+TGG | 0.571952 | 7_4:-53529667 | Msa1162740:CDS |
| TACATTATCTTTATTACTGT+AGG | 0.571983 | 7_4:-53529490 | Msa1162740:three_prime_UTR |
| GGTGAGATTGGAGAGAAGGT+TGG | 0.574769 | 7_4:+53531946 | None:intergenic |
| TTGGATACTGAAAATTGCAA+TGG | 0.574907 | 7_4:-53529520 | Msa1162740:three_prime_UTR |
| AGCAATGTGGAGTTGCAAGA+AGG | 0.575330 | 7_4:-53531257 | Msa1162740:CDS |
| TCAACCGTAACCCTAACATC+AGG | 0.576029 | 7_4:+53531698 | None:intergenic |
| TGATGAGGATCCTGATGTTA+GGG | 0.576854 | 7_4:-53531708 | Msa1162740:CDS |
| CGATGTTTCAGAAAGGGAAG+GGG | 0.576926 | 7_4:-53531640 | Msa1162740:CDS |
| CTCACCATCCTCAACGGCGA+AGG | 0.582871 | 7_4:-53531929 | Msa1162740:CDS |
| GCCTACATCAACATCCGTAA+GGG | 0.584822 | 7_4:-53531860 | Msa1162740:CDS |
| TCCAATCTCACCATCCTCAA+CGG | 0.585506 | 7_4:-53531935 | Msa1162740:CDS |
| TAATGCCAGGATTAGTAAGG+AGG | 0.593594 | 7_4:-53531321 | Msa1162740:CDS |
| AGAGGTTACCTTCGCCGTTG+AGG | 0.594117 | 7_4:+53531921 | None:intergenic |
| TGCGATGTTTCAGAAAGGGA+AGG | 0.595442 | 7_4:-53531642 | Msa1162740:CDS |
| TGAGATTGATTTCATACCCA+GGG | 0.595629 | 7_4:+53531828 | None:intergenic |
| CCTATCTTCCTCAGGTACAT+CGG | 0.599844 | 7_4:+53529795 | None:intergenic |
| TTAAGAAAGAAGGGTTGGAA+AGG | 0.603291 | 7_4:+53532159 | None:intergenic |
| CACCAATTCTCACCGTACGA+TGG | 0.617366 | 7_4:-53532086 | Msa1162740:exon |
| AAGATGAAAGTCCGATTGGG+AGG | 0.618852 | 7_4:-53531676 | Msa1162740:CDS |
| GAGAGGTGGTCCTGTTAAGG+AGG | 0.620858 | 7_4:-53531576 | Msa1162740:CDS |
| ATCGTCGAAGAACGTCCAGA+CGG | 0.624220 | 7_4:-53532034 | Msa1162740:CDS |
| CGTTCACAACTGGCACTGGT+CGG | 0.625893 | 7_4:-53532005 | Msa1162740:CDS |
| GTGAAGCGAAGGATAATGAA+GGG | 0.634620 | 7_4:-53531790 | Msa1162740:CDS |
| GTGAGATTGATTTCATACCC+AGG | 0.635538 | 7_4:+53531827 | None:intergenic |
| TTCCTGGGAAGGTGAAGCGA+AGG | 0.635710 | 7_4:-53531801 | Msa1162740:CDS |
| GGTGAGGCTACGGAGAGTAG+TGG | 0.639392 | 7_4:+53531889 | None:intergenic |
| GTTGAGAGTATGGCGAGAGG+TGG | 0.642074 | 7_4:-53531590 | Msa1162740:CDS |
| TTCTGATGAGAATGCTGATG+AGG | 0.643664 | 7_4:-53531723 | Msa1162740:CDS |
| TGATGTAGGCTTCGCCGGTG+AGG | 0.647107 | 7_4:+53531873 | None:intergenic |
| TGGGTTGAGAGTATGGCGAG+AGG | 0.647931 | 7_4:-53531593 | Msa1162740:CDS |
| ACGGCGAAGGTGATAAACGA+TGG | 0.652154 | 7_4:-53532057 | Msa1162740:CDS |
| GAGTCCTTCTGTTAAGAAGG+AGG | 0.652164 | 7_4:-53531468 | Msa1162740:CDS |
| CCTACATCAACATCCGTAAG+GGG | 0.655539 | 7_4:-53531859 | Msa1162740:CDS |
| GACACATACCGATGTACCTG+AGG | 0.657140 | 7_4:-53529803 | Msa1162740:CDS |
| GTATGGGAATGCTACTGTGG+TGG | 0.667144 | 7_4:-53529687 | Msa1162740:CDS |
| GTAAGGGGAAGATTATCCCT+GGG | 0.667636 | 7_4:-53531844 | Msa1162740:CDS |
| ACGATGGCGAAATACGGCGA+AGG | 0.671334 | 7_4:-53532070 | Msa1162740:CDS |
| AAGGGAAGTTGATTGTGCAG+AGG | 0.679090 | 7_4:-53531238 | Msa1162740:CDS |
| CAGGTATGGGAATGCTACTG+TGG | 0.679562 | 7_4:-53529690 | Msa1162740:CDS |
| TTTGGAGGTTAAGAAGCCGG+CGG | 0.691214 | 7_4:-53531552 | Msa1162740:CDS |
| GTCTGTCACTGGAAGCAATG+TGG | 0.701493 | 7_4:-53531270 | Msa1162740:CDS |
| GTGGTGGAGAACACTGAAAG+GGG | 0.728002 | 7_4:-53529671 | Msa1162740:CDS |
| AGGATTAGTAAGGAGGTTGG+GGG | 0.763662 | 7_4:-53531314 | Msa1162740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTAAATAAATAATGCT+AGG | - | chr7_4:53530819-53530838 | Msa1162740:intron | 15.0% |
| !!! | TGACATCATATATATTTTTT+AGG | + | chr7_4:53531543-53531562 | None:intergenic | 15.0% |
| !! | AAAAAATATATATGATGTCA+TGG | - | chr7_4:53531543-53531562 | Msa1162740:CDS | 15.0% |
| !!! | TAGGTTAGTATTTTAAATAT+TGG | - | chr7_4:53531809-53531828 | Msa1162740:CDS | 15.0% |
| !!! | AGGTTAGTATTTTAAATATT+GGG | - | chr7_4:53531810-53531829 | Msa1162740:CDS | 15.0% |
| !!! | AATGTTTATTTTATCTTTCT+GGG | - | chr7_4:53531842-53531861 | Msa1162740:CDS | 15.0% |
| !!! | TTTTTATAAGGAAAGATTAA+TGG | - | chr7_4:53532035-53532054 | Msa1162740:CDS | 15.0% |
| !! | TAATGAGTAAATACTCAAAT+TGG | - | chr7_4:53530883-53530902 | Msa1162740:intron | 20.0% |
| !!! | AATCAAATTTTTCTTTTCCT+TGG | - | chr7_4:53530993-53531012 | Msa1162740:intron | 20.0% |
| !!! | TAAAGTTGATATATCATGAA+TGG | - | chr7_4:53531166-53531185 | Msa1162740:intron | 20.0% |
| !! | AATCTAATTGAATAATGCTA+GGG | - | chr7_4:53531194-53531213 | Msa1162740:intron | 20.0% |
| !! | ATAACAAATAGTATTCACTT+CGG | + | chr7_4:53531426-53531445 | None:intergenic | 20.0% |
| !!! | ATTTTGAAAAAAGTCATCAA+TGG | + | chr7_4:53531578-53531597 | None:intergenic | 20.0% |
| !!! | TTTTAAATATTGGGAATGAT+TGG | - | chr7_4:53531819-53531838 | Msa1162740:CDS | 20.0% |
| !!! | GAATGTTTATTTTATCTTTC+TGG | - | chr7_4:53531841-53531860 | Msa1162740:CDS | 20.0% |
| !!! | TGCAGATTTTGATTTTTATA+AGG | - | chr7_4:53532023-53532042 | Msa1162740:CDS | 20.0% |
| !! | TACATTATCTTTATTACTGT+AGG | - | chr7_4:53532095-53532114 | Msa1162740:five_prime_UTR | 20.0% |
| !!! | GTGAGTTTAGTATTTTTGAT+GGG | - | chr7_4:53530293-53530312 | Msa1162740:intron | 25.0% |
| ! | GTTAATATACGAGACAAAAT+TGG | + | chr7_4:53530462-53530481 | None:intergenic | 25.0% |
| ! | ATCCTACAATAAAATGTATC+GGG | + | chr7_4:53530536-53530555 | None:intergenic | 25.0% |
| ! | CATCCTACAATAAAATGTAT+CGG | + | chr7_4:53530537-53530556 | None:intergenic | 25.0% |
| !! | TGTTAGTTTATAAGTTGAGT+AGG | - | chr7_4:53530659-53530678 | Msa1162740:intron | 25.0% |
| !! | GTTAGTTTATAAGTTGAGTA+GGG | - | chr7_4:53530660-53530679 | Msa1162740:intron | 25.0% |
| ! | TCAGTGTAAAAGACTAAATT+GGG | + | chr7_4:53530702-53530721 | None:intergenic | 25.0% |
| ! | AGACTTTAATTGCATTTAGT+TGG | - | chr7_4:53530773-53530792 | Msa1162740:intron | 25.0% |
| ! | TGAGTATTTACTCATTAATC+AGG | + | chr7_4:53530880-53530899 | None:intergenic | 25.0% |
| ! | AATTGGTACTTGAAATTGTA+AGG | - | chr7_4:53530900-53530919 | Msa1162740:intron | 25.0% |
| ! | ATAAAATCTCGATAATCTGA+GGG | + | chr7_4:53530941-53530960 | None:intergenic | 25.0% |
| ! | TATAAAATCTCGATAATCTG+AGG | + | chr7_4:53530942-53530961 | None:intergenic | 25.0% |
| ! | GAATCTAATTGAATAATGCT+AGG | - | chr7_4:53531193-53531212 | Msa1162740:intron | 25.0% |
| ! | TAATTGATACTGTGAAGAAT+CGG | - | chr7_4:53531469-53531488 | Msa1162740:CDS | 25.0% |
| ! | TTAAATGTTGTTGTGTTGAA+TGG | - | chr7_4:53531605-53531624 | Msa1162740:CDS | 25.0% |
| ! | ATTAACGTAATGATGCATAA+TGG | - | chr7_4:53531696-53531715 | Msa1162740:CDS | 25.0% |
| !!! | AAAGATTAATGGATTCACAT+TGG | - | chr7_4:53532046-53532065 | Msa1162740:CDS | 25.0% |
| AAAGGTCTAGAAAGAAAAGA+AGG | + | chr7_4:53529411-53529430 | None:intergenic | 30.0% | |
| AATTCGTTGTTGAAGGTTAA+TGG | - | chr7_4:53529818-53529837 | Msa1162740:CDS | 30.0% | |
| GCATTCTCATCAGAAATATA+CGG | + | chr7_4:53529857-53529876 | None:intergenic | 30.0% | |
| GCAGAATAATGTTAATGTTC+CGG | - | chr7_4:53530069-53530088 | Msa1162740:intron | 30.0% | |
| AAGGAAGAATATTGTGATGA+CGG | - | chr7_4:53530165-53530184 | Msa1162740:intron | 30.0% | |
| ! | GGATTTGTTTGAGATATTGA+TGG | - | chr7_4:53530210-53530229 | Msa1162740:intron | 30.0% |
| ! | AGATATTGATGGATGAGAAT+AGG | - | chr7_4:53530221-53530240 | Msa1162740:intron | 30.0% |
| !! | GGTGAGTTTAGTATTTTTGA+TGG | - | chr7_4:53530292-53530311 | Msa1162740:intron | 30.0% |
| ATGTTAGAATACCAATGAAC+CGG | + | chr7_4:53530575-53530594 | None:intergenic | 30.0% | |
| ! | ATTATAGACTATGATGACGT+TGG | - | chr7_4:53530593-53530612 | Msa1162740:intron | 30.0% |
| ! | TTATAGACTATGATGACGTT+GGG | - | chr7_4:53530594-53530613 | Msa1162740:intron | 30.0% |
| GTCAGTGTAAAAGACTAAAT+TGG | + | chr7_4:53530703-53530722 | None:intergenic | 30.0% | |
| !! | TTCTAGAATGTTCGTTAGAT+TGG | - | chr7_4:53530727-53530746 | Msa1162740:intron | 30.0% |
| GATTGGTACTTGAAATTGTA+TGG | - | chr7_4:53531026-53531045 | Msa1162740:intron | 30.0% | |
| ! | TAGTATCGAATCTCGATAAT+TGG | + | chr7_4:53531071-53531090 | None:intergenic | 30.0% |
| CAATGAGTAAATATCGAAGT+TGG | + | chr7_4:53531340-53531359 | None:intergenic | 30.0% | |
| ATCAATTACAATAGCAACGA+GGG | + | chr7_4:53531457-53531476 | None:intergenic | 30.0% | |
| TATCAATTACAATAGCAACG+AGG | + | chr7_4:53531458-53531477 | None:intergenic | 30.0% | |
| !!! | GCATAATGGTTTATTTTTGC+AGG | - | chr7_4:53531710-53531729 | Msa1162740:CDS | 30.0% |
| !!! | TATGGTTGGTTTTCTTATAC+AGG | - | chr7_4:53531876-53531895 | Msa1162740:CDS | 30.0% |
| !! | TTGGTTTTCTTATACAGGTA+TGG | - | chr7_4:53531881-53531900 | Msa1162740:CDS | 30.0% |
| ! | TGGTTTTCTTATACAGGTAT+GGG | - | chr7_4:53531882-53531901 | Msa1162740:CDS | 30.0% |
| TTGGATACTGAAAATTGCAA+TGG | - | chr7_4:53532065-53532084 | Msa1162740:CDS | 30.0% | |
| GTCTAGAAAGAAAAGAAGGA+TGG | + | chr7_4:53529407-53529426 | None:intergenic | 35.0% | |
| TTAAGAAAGAAGGGTTGGAA+AGG | + | chr7_4:53529429-53529448 | None:intergenic | 35.0% | |
| TTGGTTTAAGAAAGAAGGGT+TGG | + | chr7_4:53529434-53529453 | None:intergenic | 35.0% | |
| ! | GGGTTTGGTTTAAGAAAGAA+GGG | + | chr7_4:53529438-53529457 | None:intergenic | 35.0% |
| ! | AGGGTTTGGTTTAAGAAAGA+AGG | + | chr7_4:53529439-53529458 | None:intergenic | 35.0% |
| ! | TGAGATTGATTTCATACCCA+GGG | + | chr7_4:53529760-53529779 | None:intergenic | 35.0% |
| AAATCAATCTCACTGTTTCC+TGG | - | chr7_4:53529768-53529787 | Msa1162740:intron | 35.0% | |
| AATCAATCTCACTGTTTCCT+GGG | - | chr7_4:53529769-53529788 | Msa1162740:intron | 35.0% | |
| TTGAAGATGAAAGTCCGATT+GGG | - | chr7_4:53529906-53529925 | Msa1162740:intron | 35.0% | |
| !! | GTTGATTTTGGAGAAGGTTA+GGG | - | chr7_4:53529967-53529986 | Msa1162740:intron | 35.0% |
| AAGAAGAAGGAGAGTAAGAA+GGG | - | chr7_4:53530142-53530161 | Msa1162740:intron | 35.0% | |
| TGACGGAGAAGTTTAATTGT+CGG | - | chr7_4:53530182-53530201 | Msa1162740:intron | 35.0% | |
| ! | TATTGATGGATGAGAATAGG+TGG | - | chr7_4:53530224-53530243 | Msa1162740:intron | 35.0% |
| ! | GTCCCGATACATTTTATTGT+AGG | - | chr7_4:53530531-53530550 | Msa1162740:intron | 35.0% |
| GATGTTAGTTAGATTTGTCC+CGG | - | chr7_4:53530515-53530534 | Msa1162740:intron | 35.0% | |
| TGTTAGAATACCAATGAACC+GGG | + | chr7_4:53530574-53530593 | None:intergenic | 35.0% | |
| ! | GTTGAGTAGGGAAATTTTGT+AGG | - | chr7_4:53530672-53530691 | Msa1162740:intron | 35.0% |
| ! | TTGATAACAGATCCAGACAT+AGG | - | chr7_4:53530848-53530867 | Msa1162740:intron | 35.0% |
| TGATAACAGATCCAGACATA+GGG | - | chr7_4:53530849-53530868 | Msa1162740:intron | 35.0% | |
| TGGTACTTGAAATTGTAAGG+CGG | - | chr7_4:53530903-53530922 | Msa1162740:intron | 35.0% | |
| ! | TCTTTTCCTTGGTATTTGCA+AGG | - | chr7_4:53531004-53531023 | Msa1162740:intron | 35.0% |
| TGGTACTTGAAATTGTATGG+TGG | - | chr7_4:53531029-53531048 | Msa1162740:intron | 35.0% | |
| ATCGAATCTCGATAATTGGA+GGG | + | chr7_4:53531067-53531086 | None:intergenic | 35.0% | |
| TATCGAATCTCGATAATTGG+AGG | + | chr7_4:53531068-53531087 | None:intergenic | 35.0% | |
| CTAGTCCTTGCAAATACTAA+GGG | + | chr7_4:53531138-53531157 | None:intergenic | 35.0% | |
| TCTAGTCCTTGCAAATACTA+AGG | + | chr7_4:53531139-53531158 | None:intergenic | 35.0% | |
| TTTCCTAGAGAATTCAGACA+TGG | - | chr7_4:53531222-53531241 | Msa1162740:CDS | 35.0% | |
| TTCCTAGAGAATTCAGACAT+GGG | - | chr7_4:53531223-53531242 | Msa1162740:CDS | 35.0% | |
| TGATACACCTTACAATTTCG+AGG | - | chr7_4:53531313-53531332 | Msa1162740:CDS | 35.0% | |
| ACTTCGGTCTATGGAATTAT+AGG | + | chr7_4:53531410-53531429 | None:intergenic | 35.0% | |
| ATAGTATTCACTTCGGTCTA+TGG | + | chr7_4:53531419-53531438 | None:intergenic | 35.0% | |
| TCAATTACAATAGCAACGAG+GGG | + | chr7_4:53531456-53531475 | None:intergenic | 35.0% | |
| AATACTAACCTATCTTCCTC+AGG | + | chr7_4:53531801-53531820 | None:intergenic | 35.0% | |
| !!! | GAGTAGTGGTTTTGATGAAG+AGG | + | chr7_4:53529685-53529704 | None:intergenic | 40.0% |
| ! | GTGAGATTGATTTCATACCC+AGG | + | chr7_4:53529761-53529780 | None:intergenic | 40.0% |
| GTGAAGCGAAGGATAATGAA+GGG | - | chr7_4:53529795-53529814 | Msa1162740:intron | 40.0% | |
| TGAAGGGAATTCGTTGTTGA+AGG | - | chr7_4:53529811-53529830 | Msa1162740:CDS | 40.0% | |
| TTCTGATGAGAATGCTGATG+AGG | - | chr7_4:53529862-53529881 | Msa1162740:intron | 40.0% | |
| TGATGAGGATCCTGATGTTA+GGG | - | chr7_4:53529877-53529896 | Msa1162740:intron | 40.0% | |
| GTTGAAGATGAAAGTCCGAT+TGG | - | chr7_4:53529905-53529924 | Msa1162740:intron | 40.0% | |
| AAGGATGCGATGTTTCAGAA+AGG | - | chr7_4:53529938-53529957 | Msa1162740:intron | 40.0% | |
| AGGATGCGATGTTTCAGAAA+GGG | - | chr7_4:53529939-53529958 | Msa1162740:intron | 40.0% | |
| !! | GGTTGATTTTGGAGAAGGTT+AGG | - | chr7_4:53529966-53529985 | Msa1162740:intron | 40.0% |
| !! | TTTTGGAGAAGGTTAGGGTT+TGG | - | chr7_4:53529972-53529991 | Msa1162740:intron | 40.0% |
| TTTGGAGAAGGTTAGGGTTT+GGG | - | chr7_4:53529973-53529992 | Msa1162740:intron | 40.0% | |
| TAATGTTAATGTTCCGGCGA+CGG | - | chr7_4:53530075-53530094 | Msa1162740:intron | 40.0% | |
| TTCTCCTCCTTCTTAACAGA+AGG | + | chr7_4:53530124-53530143 | None:intergenic | 40.0% | |
| TAAGAAGGAGGAGAAGAAGA+AGG | - | chr7_4:53530129-53530148 | Msa1162740:intron | 40.0% | |
| GAAGAAGAAGGAGAGTAAGA+AGG | - | chr7_4:53530141-53530160 | Msa1162740:intron | 40.0% | |
| GACGGAGAAGTTTAATTGTC+GGG | - | chr7_4:53530183-53530202 | Msa1162740:intron | 40.0% | |
| ATGGATGAGAATAGGTGGAA+GGG | - | chr7_4:53530229-53530248 | Msa1162740:intron | 40.0% | |
| ! | GAGTAATGCCAGGATTAGTA+AGG | - | chr7_4:53530261-53530280 | Msa1162740:intron | 40.0% |
| ! | TAATGCCAGGATTAGTAAGG+AGG | - | chr7_4:53530264-53530283 | Msa1162740:intron | 40.0% |
| !! | ATTTTTGATGGGTCTGTCAC+TGG | - | chr7_4:53530304-53530323 | Msa1162740:intron | 40.0% |
| TTAGATTTGTCCCGGTTCAT+TGG | - | chr7_4:53530561-53530580 | Msa1162740:intron | 40.0% | |
| !! | GCATTTAGTTGGTAATGACG+TGG | - | chr7_4:53530784-53530803 | Msa1162740:intron | 40.0% |
| TCCTTGGTATTTGCAAGGAT+TGG | - | chr7_4:53531009-53531028 | Msa1162740:intron | 40.0% | |
| ACCAATCCTTGCAAATACCA+AGG | + | chr7_4:53531013-53531032 | None:intergenic | 40.0% | |
| GATAATTGGAGGGTCTAGAT+TGG | + | chr7_4:53531057-53531076 | None:intergenic | 40.0% | |
| TCCTTGCAAATACTAAGGGA+GGG | + | chr7_4:53531134-53531153 | None:intergenic | 40.0% | |
| TCCTAGAGAATTCAGACATG+GGG | - | chr7_4:53531224-53531243 | Msa1162740:CDS | 40.0% | |
| TAGTCACCAAGAAACGATCT+CGG | + | chr7_4:53531276-53531295 | None:intergenic | 40.0% | |
| ! | TTCTTGGTGACTAGGTTGAA+TGG | - | chr7_4:53531283-53531302 | Msa1162740:CDS | 40.0% |
| AGTTGGTCCTCGAAATTGTA+AGG | + | chr7_4:53531323-53531342 | None:intergenic | 40.0% | |
| CAATTACAATAGCAACGAGG+GGG | + | chr7_4:53531455-53531474 | None:intergenic | 40.0% | |
| AGGTTTACAACAGTAACTCC+TGG | + | chr7_4:53531762-53531781 | None:intergenic | 40.0% | |
| !! | TTCTGGGTGATTTGCTGATA+TGG | - | chr7_4:53531858-53531877 | Msa1162740:CDS | 40.0% |
| !! | GGAGGGAACTTATTTTCCAA+AGG | - | chr7_4:53531939-53531958 | Msa1162740:CDS | 40.0% |
| CAAAAACAGCACGTATCCTT+TGG | + | chr7_4:53531958-53531977 | None:intergenic | 40.0% | |
| !!! | CAAAGGATACGTGCTGTTTT+TGG | - | chr7_4:53531956-53531975 | Msa1162740:CDS | 40.0% |
| !!! | ATACGTGCTGTTTTTGGCTT+TGG | - | chr7_4:53531962-53531981 | Msa1162740:CDS | 40.0% |
| !!! | TGTGGATGTGGTTTTGGTGA+GGG | + | chr7_4:53529472-53529491 | None:intergenic | 45.0% |
| !!! | TTGTGGATGTGGTTTTGGTG+AGG | + | chr7_4:53529473-53529492 | None:intergenic | 45.0% |
| ! | TTCGGTTGTGGATGTGGTTT+TGG | + | chr7_4:53529478-53529497 | None:intergenic | 45.0% |
| ! | TACGGTGAGAATTGGTGGTT+CGG | + | chr7_4:53529496-53529515 | None:intergenic | 45.0% |
| TTGTGAACGTTAGTTCCGTC+TGG | + | chr7_4:53529569-53529588 | None:intergenic | 45.0% | |
| ACGGAACTAACGTTCACAAC+TGG | - | chr7_4:53529570-53529589 | Msa1162740:three_prime_UTR | 45.0% | |
| CGGAGACAAACTGTCTAGAA+TGG | - | chr7_4:53529600-53529619 | Msa1162740:exon | 45.0% | |
| TCCAATCTCACCATCCTCAA+CGG | - | chr7_4:53529650-53529669 | Msa1162740:CDS | 45.0% | |
| AGCCTACATCAACATCCGTA+AGG | - | chr7_4:53529724-53529743 | Msa1162740:intron | 45.0% | |
| GCCTACATCAACATCCGTAA+GGG | - | chr7_4:53529725-53529744 | Msa1162740:intron | 45.0% | |
| CCTACATCAACATCCGTAAG+GGG | - | chr7_4:53529726-53529745 | Msa1162740:intron | 45.0% | |
| CAGGGATAATCTTCCCCTTA+CGG | + | chr7_4:53529742-53529761 | None:intergenic | 45.0% | |
| GTAAGGGGAAGATTATCCCT+GGG | - | chr7_4:53529741-53529760 | Msa1162740:intron | 45.0% | |
| AATCTCACTGTTTCCTGGGA+AGG | - | chr7_4:53529773-53529792 | Msa1162740:intron | 45.0% | |
| GGTGAAGCGAAGGATAATGA+AGG | - | chr7_4:53529794-53529813 | Msa1162740:intron | 45.0% | |
| CTGATGAGGATCCTGATGTT+AGG | - | chr7_4:53529876-53529895 | Msa1162740:intron | 45.0% | |
| GGATCCTGATGTTAGGGTTA+CGG | - | chr7_4:53529883-53529902 | Msa1162740:intron | 45.0% | |
| TCAACCGTAACCCTAACATC+AGG | + | chr7_4:53529890-53529909 | None:intergenic | 45.0% | |
| AAGATGAAAGTCCGATTGGG+AGG | - | chr7_4:53529909-53529928 | Msa1162740:intron | 45.0% | |
| TCCTTAATCCTCCTCCCAAT+CGG | + | chr7_4:53529923-53529942 | None:intergenic | 45.0% | |
| TGCGATGTTTCAGAAAGGGA+AGG | - | chr7_4:53529943-53529962 | Msa1162740:intron | 45.0% | |
| GCGATGTTTCAGAAAGGGAA+GGG | - | chr7_4:53529944-53529963 | Msa1162740:intron | 45.0% | |
| CGATGTTTCAGAAAGGGAAG+GGG | - | chr7_4:53529945-53529964 | Msa1162740:intron | 45.0% | |
| !! | GAAAGGGAAGGGGTTGATTT+TGG | - | chr7_4:53529955-53529974 | Msa1162740:intron | 45.0% |
| !! | GAAGGGGTTGATTTTGGAGA+AGG | - | chr7_4:53529961-53529980 | Msa1162740:intron | 45.0% |
| !! | TAGGGTTTGGGTTGAGAGTA+TGG | - | chr7_4:53529985-53530004 | Msa1162740:intron | 45.0% |
| TGGTCCTGTTAAGGAGGATT+TGG | - | chr7_4:53530015-53530034 | Msa1162740:intron | 45.0% | |
| TCCTGTTAAGGAGGATTTGG+AGG | - | chr7_4:53530018-53530037 | Msa1162740:intron | 45.0% | |
| ACCTCCAAATCCTCCTTAAC+AGG | + | chr7_4:53530022-53530041 | None:intergenic | 45.0% | |
| GGATTTGGAGGTTAAGAAGC+CGG | - | chr7_4:53530030-53530049 | Msa1162740:intron | 45.0% | |
| GTCGAGTCCTTCTGTTAAGA+AGG | - | chr7_4:53530114-53530133 | Msa1162740:intron | 45.0% | |
| GAGTCCTTCTGTTAAGAAGG+AGG | - | chr7_4:53530117-53530136 | Msa1162740:intron | 45.0% | |
| AGAAGGAGAGTAAGAAGGGA+AGG | - | chr7_4:53530146-53530165 | Msa1162740:intron | 45.0% | |
| GAAGTTTAATTGTCGGGCGA+AGG | - | chr7_4:53530189-53530208 | Msa1162740:intron | 45.0% | |
| GATGGATGAGAATAGGTGGA+AGG | - | chr7_4:53530228-53530247 | Msa1162740:intron | 45.0% | |
| ! | GTTTTACGCAGAGTAATGCC+AGG | - | chr7_4:53530251-53530270 | Msa1162740:intron | 45.0% |
| ! | CCAGGATTAGTAAGGAGGTT+GGG | - | chr7_4:53530269-53530288 | Msa1162740:intron | 45.0% |
| ! | CAGGATTAGTAAGGAGGTTG+GGG | - | chr7_4:53530270-53530289 | Msa1162740:intron | 45.0% |
| ! | AGGATTAGTAAGGAGGTTGG+GGG | - | chr7_4:53530271-53530290 | Msa1162740:intron | 45.0% |
| AGCAATGTGGAGTTGCAAGA+AGG | - | chr7_4:53530328-53530347 | Msa1162740:intron | 45.0% | |
| GCAATGTGGAGTTGCAAGAA+GGG | - | chr7_4:53530329-53530348 | Msa1162740:intron | 45.0% | |
| ! | AAGGGAAGTTGATTGTGCAG+AGG | - | chr7_4:53530347-53530366 | Msa1162740:intron | 45.0% |
| ATTGTGCAGAGGTGGAGATT+CGG | - | chr7_4:53530358-53530377 | Msa1162740:intron | 45.0% | |
| !! | GATTGATGGTGCTCAATCTC+AGG | - | chr7_4:53530387-53530406 | Msa1162740:intron | 45.0% |
| ! | AGACTATGATGACGTTGGGT+TGG | - | chr7_4:53530598-53530617 | Msa1162740:intron | 45.0% |
| !! | GATGACGTTGGGTTGGTATT+CGG | - | chr7_4:53530605-53530624 | Msa1162740:intron | 45.0% |
| !! | TGGGTTGGTATTCGGTAATG+TGG | - | chr7_4:53530613-53530632 | Msa1162740:intron | 45.0% |
| ATCAGGTTCATCCCTATGTC+TGG | + | chr7_4:53530863-53530882 | None:intergenic | 45.0% | |
| CCTTGCAAATACTAAGGGAG+GGG | + | chr7_4:53531133-53531152 | None:intergenic | 45.0% | |
| GTCCTTGCAAATACTAAGGG+AGG | + | chr7_4:53531135-53531154 | None:intergenic | 45.0% | |
| TCCCCATGTCTGAATTCTCT+AGG | + | chr7_4:53531228-53531247 | None:intergenic | 45.0% | |
| ACCATTCCGAGATCGTTTCT+TGG | - | chr7_4:53531267-53531286 | Msa1162740:CDS | 45.0% | |
| ACCAAGAAACGATCTCGGAA+TGG | + | chr7_4:53531271-53531290 | None:intergenic | 45.0% | |
| ! | GAGATCGTTTCTTGGTGACT+AGG | - | chr7_4:53531275-53531294 | Msa1162740:CDS | 45.0% |
| ACAACAGTAACTCCTGGTTC+AGG | + | chr7_4:53531756-53531775 | None:intergenic | 45.0% | |
| CCTATCTTCCTCAGGTACAT+CGG | + | chr7_4:53531793-53531812 | None:intergenic | 45.0% | |
| !! | GGGTGATTTGCTGATATGGT+TGG | - | chr7_4:53531862-53531881 | Msa1162740:CDS | 45.0% |
| ! | TGTGGTGGAGAACACTGAAA+GGG | - | chr7_4:53531913-53531932 | Msa1162740:CDS | 45.0% |
| !!! | TTAATTTTTTACAATTTTAA+AGG | - | chr7_4:53531361-53531380 | Msa1162740:CDS | 5.0% |
| !! | GGTTTTGGTGAGGGAGTGAA+GGG | + | chr7_4:53529463-53529482 | None:intergenic | 50.0% |
| !!! | TGGTTTTGGTGAGGGAGTGA+AGG | + | chr7_4:53529464-53529483 | None:intergenic | 50.0% |
| !! | GAGAATTGGTGGTTCGGTTG+TGG | + | chr7_4:53529490-53529509 | None:intergenic | 50.0% |
| CATCGTACGGTGAGAATTGG+TGG | + | chr7_4:53529501-53529520 | None:intergenic | 50.0% | |
| CACCAATTCTCACCGTACGA+TGG | - | chr7_4:53529499-53529518 | Msa1162740:three_prime_UTR | 50.0% | |
| CACCGTACGATGGCGAAATA+CGG | - | chr7_4:53529509-53529528 | Msa1162740:three_prime_UTR | 50.0% | |
| ACGGCGAAGGTGATAAACGA+TGG | - | chr7_4:53529528-53529547 | Msa1162740:three_prime_UTR | 50.0% | |
| ATCGTCGAAGAACGTCCAGA+CGG | - | chr7_4:53529551-53529570 | Msa1162740:three_prime_UTR | 50.0% | |
| CTAACGTTCACAACTGGCAC+TGG | - | chr7_4:53529576-53529595 | Msa1162740:three_prime_UTR | 50.0% | |
| !! | GGAGAGAAGGTTGGTGAAGA+AGG | + | chr7_4:53529633-53529652 | None:intergenic | 50.0% |
| GGTGAGATTGGAGAGAAGGT+TGG | + | chr7_4:53529642-53529661 | None:intergenic | 50.0% | |
| GGATGGTGAGATTGGAGAGA+AGG | + | chr7_4:53529646-53529665 | None:intergenic | 50.0% | |
| GATGTTGATGTAGGCTTCGC+CGG | + | chr7_4:53529720-53529739 | None:intergenic | 50.0% | |
| CCCCTTACGGATGTTGATGT+AGG | + | chr7_4:53529729-53529748 | None:intergenic | 50.0% | |
| CGTAAGGGGAAGATTATCCC+TGG | - | chr7_4:53529740-53529759 | Msa1162740:intron | 50.0% | |
| ATGAAAGTCCGATTGGGAGG+AGG | - | chr7_4:53529912-53529931 | Msa1162740:intron | 50.0% | |
| TCCGATTGGGAGGAGGATTA+AGG | - | chr7_4:53529919-53529938 | Msa1162740:intron | 50.0% | |
| TTTGGAGGTTAAGAAGCCGG+CGG | - | chr7_4:53530033-53530052 | Msa1162740:intron | 50.0% | |
| ! | GCCAGGATTAGTAAGGAGGT+TGG | - | chr7_4:53530268-53530287 | Msa1162740:intron | 50.0% |
| CCCAACCTCCTTACTAATCC+TGG | + | chr7_4:53530272-53530291 | None:intergenic | 50.0% | |
| GTCTGTCACTGGAAGCAATG+TGG | - | chr7_4:53530315-53530334 | Msa1162740:intron | 50.0% | |
| ! | GGAAGTTGATTGTGCAGAGG+TGG | - | chr7_4:53530350-53530369 | Msa1162740:intron | 50.0% |
| TTGTGCAGAGGTGGAGATTC+GGG | - | chr7_4:53530359-53530378 | Msa1162740:intron | 50.0% | |
| AGATTCGGGAGCTGGATTGA+TGG | - | chr7_4:53530373-53530392 | Msa1162740:intron | 50.0% | |
| GGTGCTCAATCTCAGGTATG+TGG | - | chr7_4:53530394-53530413 | Msa1162740:intron | 50.0% | |
| CCCCTCCCTTAGTATTTGCA+AGG | - | chr7_4:53531130-53531149 | Msa1162740:intron | 50.0% | |
| GGCTGATGTCGCATTAATCG+TGG | - | chr7_4:53531490-53531509 | Msa1162740:CDS | 50.0% | |
| !! | GCAGGTGAGACTTGTTTTCG+AGG | - | chr7_4:53531728-53531747 | Msa1162740:CDS | 50.0% |
| CAGGTACATCGGTATGTGTC+AGG | + | chr7_4:53531782-53531801 | None:intergenic | 50.0% | |
| GACACATACCGATGTACCTG+AGG | - | chr7_4:53531782-53531801 | Msa1162740:CDS | 50.0% | |
| CCGATGTACCTGAGGAAGAT+AGG | - | chr7_4:53531790-53531809 | Msa1162740:CDS | 50.0% | |
| CAGGTATGGGAATGCTACTG+TGG | - | chr7_4:53531895-53531914 | Msa1162740:CDS | 50.0% | |
| GTATGGGAATGCTACTGTGG+TGG | - | chr7_4:53531898-53531917 | Msa1162740:CDS | 50.0% | |
| ! | CTGTGGTGGAGAACACTGAA+AGG | - | chr7_4:53531912-53531931 | Msa1162740:CDS | 50.0% |
| ! | GTGGTGGAGAACACTGAAAG+GGG | - | chr7_4:53531914-53531933 | Msa1162740:CDS | 50.0% |
| TGGAGAACACTGAAAGGGGA+TGG | - | chr7_4:53531918-53531937 | Msa1162740:CDS | 50.0% | |
| AGAACACTGAAAGGGGATGG+AGG | - | chr7_4:53531921-53531940 | Msa1162740:CDS | 50.0% | |
| GAACACTGAAAGGGGATGGA+GGG | - | chr7_4:53531922-53531941 | Msa1162740:CDS | 50.0% | |
| AGGGAGTGAAGGGAAGGGTT+TGG | + | chr7_4:53529453-53529472 | None:intergenic | 55.0% | |
| TGGTGAGGGAGTGAAGGGAA+GGG | + | chr7_4:53529458-53529477 | None:intergenic | 55.0% | |
| TTGGTGAGGGAGTGAAGGGA+AGG | + | chr7_4:53529459-53529478 | None:intergenic | 55.0% | |
| !! | TGGTGGTTCGGTTGTGGATG+TGG | + | chr7_4:53529484-53529503 | None:intergenic | 55.0% |
| CGCCATCGTACGGTGAGAAT+TGG | + | chr7_4:53529504-53529523 | None:intergenic | 55.0% | |
| CGCCGTATTTCGCCATCGTA+CGG | + | chr7_4:53529514-53529533 | None:intergenic | 55.0% | |
| ACGATGGCGAAATACGGCGA+AGG | - | chr7_4:53529515-53529534 | Msa1162740:three_prime_UTR | 55.0% | |
| !! | CGTTCACAACTGGCACTGGT+CGG | - | chr7_4:53529580-53529599 | Msa1162740:three_prime_UTR | 55.0% |
| GCCGTTGAGGATGGTGAGAT+TGG | + | chr7_4:53529654-53529673 | None:intergenic | 55.0% | |
| GTTACCTTCGCCGTTGAGGA+TGG | + | chr7_4:53529663-53529682 | None:intergenic | 55.0% | |
| AGAGGTTACCTTCGCCGTTG+AGG | + | chr7_4:53529667-53529686 | None:intergenic | 55.0% | |
| ACTACTCTCCGTAGCCTCAC+CGG | - | chr7_4:53529698-53529717 | Msa1162740:intron | 55.0% | |
| TTCCTGGGAAGGTGAAGCGA+AGG | - | chr7_4:53529784-53529803 | Msa1162740:intron | 55.0% | |
| ATCCTTCGCTTCACCTTCCC+AGG | + | chr7_4:53529789-53529808 | None:intergenic | 55.0% | |
| ! | TGGGTTGAGAGTATGGCGAG+AGG | - | chr7_4:53529992-53530011 | Msa1162740:intron | 55.0% |
| ! | GTTGAGAGTATGGCGAGAGG+TGG | - | chr7_4:53529995-53530014 | Msa1162740:intron | 55.0% |
| GAGAGGTGGTCCTGTTAAGG+AGG | - | chr7_4:53530009-53530028 | Msa1162740:intron | 55.0% | |
| !! | GTTTTCGAGGAGCCTGAACC+AGG | - | chr7_4:53531741-53531760 | Msa1162740:CDS | 55.0% |
| CTCACCATCCTCAACGGCGA+AGG | - | chr7_4:53529656-53529675 | Msa1162740:CDS | 60.0% | |
| GGTGAGGCTACGGAGAGTAG+TGG | + | chr7_4:53529699-53529718 | None:intergenic | 60.0% | |
| TGATGTAGGCTTCGCCGGTG+AGG | + | chr7_4:53529715-53529734 | None:intergenic | 60.0% | |
| GGCGAGAGGTGGTCCTGTTA+AGG | - | chr7_4:53530006-53530025 | Msa1162740:intron | 60.0% | |
| GCTGTTGTTGTCACCGTCGC+CGG | + | chr7_4:53530091-53530110 | None:intergenic | 60.0% | |
| AGAGGTGGAGATTCGGGAGC+TGG | - | chr7_4:53530365-53530384 | Msa1162740:intron | 60.0% | |
| AGGCTTCGCCGGTGAGGCTA+CGG | + | chr7_4:53529709-53529728 | None:intergenic | 65.0% | |
| GGTTAAGAAGCCGGCGGCTC+AGG | - | chr7_4:53530039-53530058 | Msa1162740:intron | 65.0% | |
| TGCTTCACTGCCTGAGCCGC+CGG | + | chr7_4:53530052-53530071 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 53529395 | 53532212 | 53529395 | ID=Msa1162740;Name=Msa1162740 |
| chr7_4 | mRNA | 53529395 | 53532212 | 53529395 | ID=Msa1162740-mRNA-1;Parent=Msa1162740;Name=Msa1162740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=123|1|1|1|1|1|3|221|354 |
| chr7_4 | exon | 53529395 | 53529709 | 53529395 | ID=Msa1162740-mRNA-1:exon:15518;Parent=Msa1162740-mRNA-1 |
| chr7_4 | exon | 53529796 | 53529875 | 53529796 | ID=Msa1162740-mRNA-1:exon:15517;Parent=Msa1162740-mRNA-1 |
| chr7_4 | exon | 53531199 | 53532212 | 53531199 | ID=Msa1162740-mRNA-1:exon:15516;Parent=Msa1162740-mRNA-1 |
| chr7_4 | five_prime_UTR | 53532090 | 53532212 | 53532090 | ID=Msa1162740-mRNA-1:five_prime_utr;Parent=Msa1162740-mRNA-1 |
| chr7_4 | CDS | 53531199 | 53532089 | 53531199 | ID=Msa1162740-mRNA-1:cds;Parent=Msa1162740-mRNA-1 |
| chr7_4 | CDS | 53529796 | 53529875 | 53529796 | ID=Msa1162740-mRNA-1:cds;Parent=Msa1162740-mRNA-1 |
| chr7_4 | CDS | 53529616 | 53529709 | 53529616 | ID=Msa1162740-mRNA-1:cds;Parent=Msa1162740-mRNA-1 |
| chr7_4 | three_prime_UTR | 53529395 | 53529615 | 53529395 | ID=Msa1162740-mRNA-1:three_prime_utr;Parent=Msa1162740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
