AlfalfaGEDB | Msa1035230

M. sativa cultivar zhongmu-4 / Msa1035230

KEGG: -
GO: GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772
PFAM: PF09229.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035230	XP_003625286.1	97.175	354	10	0	1	354	1	354	0.0	702

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035230	sp\|Q8BK64\|AHSA1_MOUSE	32.394	355	217	7	1	353	1	334	1.41e-46	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035230	G7KW94	97.175	354	10	0	1	354	1	354	0.0	702

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029630	Msa1035230	0.818617	1.785458e-52	-8.615850e-47
Msa0041690	Msa1035230	0.807995	3.849883e-50	-8.615850e-47
Msa0070430	Msa1035230	0.811112	8.237852e-51	-8.615850e-47
Msa0079920	Msa1035230	0.806397	8.393117e-50	-8.615850e-47
Msa0125450	Msa1035230	0.811843	5.714701e-51	-8.615850e-47
Msa0125540	Msa1035230	0.806940	6.443000e-50	-8.615850e-47
Msa0168090	Msa1035230	0.800953	1.131566e-48	-8.615850e-47
Msa0169610	Msa1035230	0.818801	1.621854e-52	-8.615850e-47
Msa0185280	Msa1035230	0.807646	4.566811e-50	-8.615850e-47
Msa0185400	Msa1035230	0.813204	2.880694e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035230	MtrunA17_Chr7g0258891	97.175	354	10	0	1	354	1	354	0.0	702
Msa1035230	MtrunA17_Chr1g0175701	70.141	355	94	4	1	354	1	344	2.84e-180	503

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035230	AT3G12050.1	69.167	360	105	1	1	354	1	360	0.0	508
Msa1035230	AT3G12050.2	62.222	360	91	2	1	354	1	321	2.86e-152	431

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Find 138 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTAATGGATTCACAT+TGG	0.558333	7_1:+70989088	Msa1035230:three_prime_UTR
AAATCAATCTCACTGTTTCC+TGG	0.353923	7_1:+70986813	Msa1035230:CDS
AAGAAGAAGGAGAGTAAGAA+GGG	0.442005	7_1:+70987187	Msa1035230:CDS
AAGATGAAAGTCCGATTGGG+AGG	0.618852	7_1:+70986954	Msa1035230:CDS
AAGGAAGAATATTGTGATGA+CGG	0.539210	7_1:+70987210	Msa1035230:CDS
AAGGATGCGATGTTTCAGAA+AGG	0.560413	7_1:+70986983	Msa1035230:CDS
AAGGGAAGTTGATTGTGCAG+AGG	0.679090	7_1:+70987392	Msa1035230:CDS
AAGTCCTTCTGTTAAGAAGG+AGG	0.644149	7_1:+70987162	Msa1035230:CDS
AATACTAACCTATCTTCCTC+AGG	0.560053	7_1:-70988840	None:intergenic
AATCAATCTCACTGTTTCCT+GGG	0.495075	7_1:+70986814	Msa1035230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCGTTGTTGAAGGTTAA+CGG	+	chr7_1:70986863-70986882	Msa1035230:CDS	30.0%
GCATTCTCATCAGAAATATA+CGG	-	chr7_1:70986902-70986921	None:intergenic	30.0%
GCAGAATAATGTTAATGTTC+CGG	+	chr7_1:70987114-70987133	Msa1035230:CDS	30.0%
AAGGAAGAATATTGTGATGA+CGG	+	chr7_1:70987210-70987229	Msa1035230:CDS	30.0%
ATCCTACAATAAAATGTACC+GGG	-	chr7_1:70987581-70987600	None:intergenic	30.0%
CATCCTACAATAAAATGTAC+CGG	-	chr7_1:70987582-70987601	None:intergenic	30.0%
ATGTTAGAATACCAATGAAC+CGG	-	chr7_1:70987620-70987639	None:intergenic	30.0%
GTCAGTGTATAAGACTAAAT+TGG	-	chr7_1:70987748-70987767	None:intergenic	30.0%
CTATTAGAATACAAATGCAG+CGG	-	chr7_1:70987800-70987819	None:intergenic	30.0%
GATTGGTACTTGAAATTGTA+TGG	+	chr7_1:70988071-70988090	Msa1035230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	70986445	70989254	70986445	ID=Msa1035230;Name=Msa1035230
chr7_1	mRNA	70986445	70989254	70986445	ID=Msa1035230-mRNA-1;Parent=Msa1035230;Name=Msa1035230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=118\|1\|1\|1\|1\|1\|3\|221\|354
chr7_1	exon	70986445	70987453	70986445	ID=Msa1035230-mRNA-1:exon:17051;Parent=Msa1035230-mRNA-1
chr7_1	exon	70988774	70988853	70988774	ID=Msa1035230-mRNA-1:exon:17052;Parent=Msa1035230-mRNA-1
chr7_1	exon	70988940	70989254	70988940	ID=Msa1035230-mRNA-1:exon:17053;Parent=Msa1035230-mRNA-1
chr7_1	five_prime_UTR	70986445	70986562	70986445	ID=Msa1035230-mRNA-1:five_prime_utr;Parent=Msa1035230-mRNA-1
chr7_1	CDS	70986563	70987453	70986563	ID=Msa1035230-mRNA-1:cds;Parent=Msa1035230-mRNA-1
chr7_1	CDS	70988774	70988853	70988774	ID=Msa1035230-mRNA-1:cds;Parent=Msa1035230-mRNA-1
chr7_1	CDS	70988940	70989033	70988940	ID=Msa1035230-mRNA-1:cds;Parent=Msa1035230-mRNA-1
chr7_1	three_prime_UTR	70989034	70989254	70989034	ID=Msa1035230-mRNA-1:three_prime_utr;Parent=Msa1035230-mRNA-1

Gene Sequence

>Msa1035230

ATGGCGAAATACGGCGAAGGTGATAAACGATGGATCGTTGAAGAACGTCCAGACGGAACTAACGTTCACAACTGGCACTGGTCGGAGACAAACTGTCTAGAATGGTCTAGAACCTTCTTCACCAACCTTCTCTCCAATCTCACCATCCTCAACGGCGAAGGTAACCTCTTCATCAAAACCACTACTCTCCGTAGCCTCACCGGCGAAGCCTACATCAACATCCGTAAGGGGAAGATTATCCCTGGGTATGAAATCAATCTCACTGTTTCCTGGGAAGGTGAAGCGAAGGATAATGAAGGGAATTCGTTGTTGAAGGTTAACGGTGCTGTTGAGATTCCGTATATTTCTGATGAGAATGCTGATGAGGATCCTGATGTTAGGGTTATAGTTGAAGATGAAAGTCCGATTGGGAGGAGGATTAAGGATGCGATGTTTCAGAAAGGGAAAGGGGTGATTTTGGAGAAGGTTAGGGTTTGGGTTGATAGTATGGCGAGAGGTGGTCCTGTTAAGGAGGATTTGGAGGTTAAGAAGCCGGCGGCTCAGGCAGTGAAGCAGAATAATGTTAATGTTCCGGCGACGGTGACAACAACAGCAGCGTCAAGTCCTTCTGTTAAGAAGGAGGAGAAGAAGAAGGAGAGTAAGAAGGGAAGGAAGAATATTGTGATGACGGAGAAGTTTAATTGTCGGGCGAAGGATTTGTTTGAGATATTGATGGATGAGAATAGGTGGAAGGGTTTTACGCAGAGTAATGCGAGGATTAGTAAGGAGGTTGGGGGTGAGTTTAGTATTTTTGATGGGTCTGTCACTGGAAGCAATGTGGAGTTGCAAGAAGGGAAGTTGATTGTGCAGAGGTGGAGATTCGGGAGCTGGATTGATGGTGCTCAATCTCAGGTGAGACTTGTTTTCGAGGAGCCTGAACCAGGAGTTACTGTTGTAAACCTGACACATACCGATGTACCTGAGGAAGATAGGTATGGGAATGCTACTGTGGTGGAGAACACTGAAAGGGGATGGAGGGAACTTATTTTCCAAAGGATACGTGCTGTTTTTGGCTTTGGAATCTGA

Protein sequence

>Msa1035230

MAKYGEGDKRWIVEERPDGTNVHNWHWSETNCLEWSRTFFTNLLSNLTILNGEGNLFIKTTTLRSLTGEAYINIRKGKIIPGYEINLTVSWEGEAKDNEGNSLLKVNGAVEIPYISDENADEDPDVRVIVEDESPIGRRIKDAMFQKGKGVILEKVRVWVDSMARGGPVKEDLEVKKPAAQAVKQNNVNVPATVTTTAASSPSVKKEEKKKESKKGRKNIVMTEKFNCRAKDLFEILMDENRWKGFTQSNARISKEVGGEFSIFDGSVTGSNVELQEGKLIVQRWRFGSWIDGAQSQVRLVFEEPEPGVTVVNLTHTDVPEEDRYGNATVVENTERGWRELIFQRIRAVFGFGI*