AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 88 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTGATGGACAATTTAA+TGG 0.241093 7_4:+53818046 None:intergenic
GTTTATTTGACTTTCACTTT+AGG 0.301467 7_4:-53818328 Msa1162890:five_prime_UTR
CCATCTCTTTGATCCACTTT+AGG 0.305999 7_4:+53813341 None:intergenic
TGGAAGCACACTTAGCATAT+TGG 0.308313 7_4:+53818066 None:intergenic
CTTGAAAACCCAACATTGTT+GGG 0.309964 7_4:-53817775 Msa1162890:five_prime_UTR
CCCATTGCTTCTGCCATTAG+TGG 0.312397 7_4:+53813376 None:intergenic
GTTCCTTTGGTTCCTTATTC+CGG 0.315921 7_4:-53813184 Msa1162890:CDS
TGAAGGAGGGTCGACTTGTT+GGG 0.322374 7_4:-53813470 Msa1162890:CDS
GTAAAACACCTAACTGATAA+TGG 0.324856 7_4:-53818243 Msa1162890:five_prime_UTR
CACTTCCACAAACCGGAATA+AGG 0.325424 7_4:+53813172 None:intergenic
TGATCATGAGTGAACCTGTT+AGG 0.347250 7_4:+53818098 None:intergenic
GTTCTATGTGGCTGTTCCTT+TGG 0.348812 7_4:-53813197 Msa1162890:CDS
ACGATGGCCATTTCCCTAAC+AGG 0.350126 7_4:-53818112 Msa1162890:five_prime_UTR
ATGGCCATCGTTGGTGGAAC+TGG 0.350649 7_4:+53818124 None:intergenic
CTTATTCCGGTTTGTGGAAG+TGG 0.358155 7_4:-53813171 Msa1162890:CDS
ATGGATGACCCTTTGACGGC+TGG 0.362400 7_4:+53817926 None:intergenic
TTTGTGTTCCATTATCAGTT+AGG 0.363546 7_4:+53818235 None:intergenic
ACAAATACCATGCTAGGTTT+TGG 0.370876 7_4:-53817848 Msa1162890:five_prime_UTR
AACTATATTGAATTTATAAA+CGG 0.384301 7_4:-53818371 Msa1162890:five_prime_UTR
GGAAGCACACTTAGCATATT+GGG 0.389276 7_4:+53818067 None:intergenic
AAACAAACTATCATAATATT+CGG 0.396844 7_4:+53813099 None:intergenic
TATAAAGACATCACCACTAA+TGG 0.404272 7_4:-53813389 Msa1162890:CDS
AGCCTATCCCCAACAATGTT+GGG 0.408783 7_4:+53817767 None:intergenic
TTGAAGGAGGGTCGACTTGT+TGG 0.409065 7_4:-53813471 Msa1162890:CDS
TACTTTCATGACATCGTGTC+GGG 0.426601 7_4:+53817824 None:intergenic
TGGTTCCTTATTCCGGTTTG+TGG 0.432975 7_4:-53813177 Msa1162890:CDS
TCTTGAAAACCCAACATTGT+TGG 0.435208 7_4:-53817776 Msa1162890:five_prime_UTR
TATTCCGTTGATTACACTAA+AGG 0.444889 7_4:+53818187 None:intergenic
GAGTGAACCTGTTAGGGAAA+TGG 0.447065 7_4:+53818105 None:intergenic
GATCATGAGTGAACCTGTTA+GGG 0.466127 7_4:+53818099 None:intergenic
ATATTATAGAGAGGAAAGTA+AGG 0.472220 7_4:-53817715 Msa1162890:five_prime_UTR
TGGATGACCCTTTGACGGCT+GGG 0.473571 7_4:+53817927 None:intergenic
ACAAATATTATAATGATATG+TGG 0.474463 7_4:-53812998 Msa1162890:three_prime_UTR
TTCTATATCACAAGAGGAGA+TGG 0.477985 7_4:+53817997 None:intergenic
TTTCCTCCACTTCCACAAAC+CGG 0.478607 7_4:+53813165 None:intergenic
GGCGATGGATGACCCTTTGA+CGG 0.482950 7_4:+53817922 None:intergenic
TTTATAGTAATTAGTGGCAG+TGG 0.489871 7_4:-53817744 Msa1162890:five_prime_UTR
AGGGAAATGGCCATCGTTGG+TGG 0.496588 7_4:+53818118 None:intergenic
ACCACTAATGGCAGAAGCAA+TGG 0.501198 7_4:-53813377 Msa1162890:CDS
GTAATTAGTGGCAGTGGCAA+GGG 0.501581 7_4:-53817738 Msa1162890:five_prime_UTR
TTTGTGGAAGTGGAGGAAAT+AGG 0.504428 7_4:-53813161 Msa1162890:CDS
TGAATCAAAACTTGTGGGTA+AGG 0.505874 7_4:+53817958 None:intergenic
AAGCCTATCCCCAACAATGT+TGG 0.507170 7_4:+53817766 None:intergenic
AGGGTCGACTTGTTGGGGAC+TGG 0.507394 7_4:-53813464 Msa1162890:CDS
CCACTAATGGCAGAAGCAAT+GGG 0.521363 7_4:-53813376 Msa1162890:CDS
GAAGGAGGGTCGACTTGTTG+GGG 0.526793 7_4:-53813469 Msa1162890:CDS
ATCGCCACAACTGTCCCAAA+TGG 0.528212 7_4:-53817905 Msa1162890:five_prime_UTR
AGAGGAGATGGGACTAATGA+TGG 0.528699 7_4:+53818009 None:intergenic
TCAGCTACAAATACCATGCT+AGG 0.528865 7_4:-53817854 Msa1162890:five_prime_UTR
ATTTGGGACAGTTGTGGCGA+TGG 0.529221 7_4:+53817907 None:intergenic
ATTGAATTTATAAACGGATG+TGG 0.535079 7_4:-53818365 Msa1162890:five_prime_UTR
AGTAATTAGTGGCAGTGGCA+AGG 0.543512 7_4:-53817739 Msa1162890:five_prime_UTR
TTTCGTACGTGGGTATGCTC+AGG 0.546620 7_4:+53818156 None:intergenic
ATGACCATGGCATTCACTGA+TGG 0.547124 7_4:+53818034 None:intergenic
AAACTTGTGGGTAAGGCTCA+AGG 0.547993 7_4:+53817965 None:intergenic
TTTGATCTTGATCTCCCTCT+CGG 0.553033 7_4:+53813127 None:intergenic
TTACACTTCTATATCACAAG+AGG 0.558364 7_4:+53817991 None:intergenic
TTGAAAACCCAACATTGTTG+GGG 0.559039 7_4:-53817774 Msa1162890:five_prime_UTR
GAGTGAGATGGTGCCTAAAG+TGG 0.559571 7_4:-53813354 Msa1162890:CDS
GTCGACTTGTTGGGGACTGG+TGG 0.559897 7_4:-53813461 Msa1162890:CDS
GAACGTGAATCAAAACTTGT+GGG 0.564741 7_4:+53817953 None:intergenic
CTGGTGGCTCGCAACTGTGA+AGG 0.565547 7_4:-53813445 Msa1162890:CDS
TTACTTTCATGACATCGTGT+CGG 0.568079 7_4:+53817823 None:intergenic
AAACCGGAATAAGGAACCAA+AGG 0.569547 7_4:+53813181 None:intergenic
GAGCAGCATTCTGTTCTATG+TGG 0.572692 7_4:-53813209 Msa1162890:intron
CACTAAAGGAGATGCCATTG+TGG 0.590470 7_4:+53818201 None:intergenic
TCTATATCACAAGAGGAGAT+GGG 0.592301 7_4:+53817998 None:intergenic
ATTCCGGTTTGTGGAAGTGG+AGG 0.593179 7_4:-53813168 Msa1162890:CDS
ATCTCCTTTAGTGTAATCAA+CGG 0.597699 7_4:-53818191 Msa1162890:five_prime_UTR
AACCCAACATTGTTGGGGAT+AGG 0.598382 7_4:-53817769 Msa1162890:five_prime_UTR
GTCGGGACCAAAACCTAGCA+TGG 0.611064 7_4:+53817841 None:intergenic
TAGTTCATTCACATCAACCA+TGG 0.611270 7_4:+53817652 None:intergenic
GTTCAAAGAAATGAGAATCG+TGG 0.613190 7_4:-53817693 Msa1162890:exon
GTTGCCATTTGGGACAGTTG+TGG 0.614741 7_4:+53817901 None:intergenic
GTTAGGGAAATGGCCATCGT+TGG 0.616092 7_4:+53818115 None:intergenic
CGAACGTGAATCAAAACTTG+TGG 0.618950 7_4:+53817952 None:intergenic
TGTCATGAAAGTAAAAGTGA+AGG 0.621515 7_4:-53817814 Msa1162890:five_prime_UTR
CCTAAAGTGGATCAAAGAGA+TGG 0.624012 7_4:-53813341 Msa1162890:intron
AGCTCCAGTTCCACCAACGA+TGG 0.638787 7_4:-53818128 Msa1162890:five_prime_UTR
TGTAGCTGAACCCAATGGCA+AGG 0.648979 7_4:+53817868 None:intergenic
AGGAGCGAAGATCACCGAGA+GGG 0.649648 7_4:-53813141 Msa1162890:CDS
GTATTTGTAGCTGAACCCAA+TGG 0.653475 7_4:+53817863 None:intergenic
TTGTCCATCAGTGAATGCCA+TGG 0.656146 7_4:-53818038 Msa1162890:five_prime_UTR
CAGAAGCAATGGGAGTGAGA+TGG 0.678456 7_4:-53813366 Msa1162890:CDS
TGGCAAGGGATATTATAGAG+AGG 0.685595 7_4:-53817724 Msa1162890:five_prime_UTR
AAATATGTCATATTCCACAA+TGG 0.686079 7_4:-53818215 Msa1162890:five_prime_UTR
ACTAATGATGGTGATGACCA+TGG 0.702330 7_4:+53818021 None:intergenic
TAGGAGCGAAGATCACCGAG+AGG 0.719201 7_4:-53813142 Msa1162890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATATTGAATTTATAAA+CGG - chr7_4:53812988-53813007 Msa1162890:three_prime_UTR 10.0%
!!! ATTTTTTAGTACAAAATAAT+TGG - chr7_4:53814056-53814075 Msa1162890:intron 10.0%
!! TCTTAAATTAGTATATTTAT+TGG + chr7_4:53815157-53815176 None:intergenic 10.0%
!!! AATATACTAATTTAAGATTT+CGG - chr7_4:53815160-53815179 Msa1162890:intron 10.0%
!!! TTATTATAAGTTGAATTAAT+TGG + chr7_4:53815603-53815622 None:intergenic 10.0%
!! AAAAATTTCAGTATATTTCT+CGG + chr7_4:53814002-53814021 None:intergenic 15.0%
!!! AATATTTTTTAAAGAAACTG+TGG - chr7_4:53814269-53814288 Msa1162890:intron 15.0%
!!! ATATTTTTTAAAGAAACTGT+GGG - chr7_4:53814270-53814289 Msa1162890:intron 15.0%
!!! ATATACTAATTTAAGATTTC+GGG - chr7_4:53815161-53815180 Msa1162890:intron 15.0%
!! AAAACTTCAATAACAAAAAA+AGG + chr7_4:53816127-53816146 None:intergenic 15.0%
!! AAAATCAATTGAAGAAAAAT+TGG - chr7_4:53816441-53816460 Msa1162890:intron 15.0%
!! ATAATTGTATAAATGTTGTA+AGG - chr7_4:53817479-53817498 Msa1162890:intron 15.0%
!! AAACAAACTATCATAATATT+CGG + chr7_4:53818263-53818282 None:intergenic 15.0%
!! ACAAATATTATAATGATATG+TGG - chr7_4:53818361-53818380 Msa1162890:five_prime_UTR 15.0%
!! CAAATCAAAAAATAAACTCT+TGG - chr7_4:53813094-53813113 Msa1162890:exon 20.0%
!! TACATGCCTATTTATATATT+AGG - chr7_4:53813825-53813844 Msa1162890:intron 20.0%
!! TTTAGATGTATGTCAAAATA+TGG - chr7_4:53813916-53813935 Msa1162890:intron 20.0%
!!! ATCTTTATTTCTCAAAGAAA+TGG + chr7_4:53814419-53814438 None:intergenic 20.0%
!! GTAATTAACTGAATTATTGA+GGG + chr7_4:53815401-53815420 None:intergenic 20.0%
!! AAAGAAAAGAGAAAATATGT+GGG + chr7_4:53815834-53815853 None:intergenic 20.0%
!! AAAAGAAAAGAGAAAATATG+TGG + chr7_4:53815835-53815854 None:intergenic 20.0%
!! ACTTCAATTTCAAACAAAAT+CGG - chr7_4:53815863-53815882 Msa1162890:intron 20.0%
!!! GATCGAAAAAAGTATAAAAT+CGG + chr7_4:53815945-53815964 None:intergenic 20.0%
!! AAGCTAGATAAAAATTTGAA+AGG + chr7_4:53816061-53816080 None:intergenic 20.0%
!!! TTTGTTATTGAAGTTTTGAT+TGG - chr7_4:53816130-53816149 Msa1162890:intron 20.0%
!!! TTAAGCTTCAATTTTAGAAA+TGG - chr7_4:53816535-53816554 Msa1162890:intron 20.0%
!!! TAAGCTTCAATTTTAGAAAT+GGG - chr7_4:53816536-53816555 Msa1162890:intron 20.0%
!!! AACTCTTAAGTTTTTAACAT+AGG - chr7_4:53817320-53817339 Msa1162890:intron 20.0%
!!! ACTCTTAAGTTTTTAACATA+GGG - chr7_4:53817321-53817340 Msa1162890:intron 20.0%
!! GTTTATATATAGAAGATAGA+TGG - chr7_4:53817402-53817421 Msa1162890:intron 20.0%
!! GATCAATATAGATATAGATT+TGG - chr7_4:53817431-53817450 Msa1162890:intron 20.0%
!! ATTATACTTAGCTTATGTAT+AGG + chr7_4:53817464-53817483 None:intergenic 20.0%
!!! CATCAAATTTTTATTAGCAT+AGG + chr7_4:53817838-53817857 None:intergenic 20.0%
!! TCAACATCTATATTAATCTT+TGG + chr7_4:53817863-53817882 None:intergenic 20.0%
! ATTGAATTTATAAACGGATG+TGG - chr7_4:53812994-53813013 Msa1162890:three_prime_UTR 25.0%
!! GTTTATTTGACTTTCACTTT+AGG - chr7_4:53813031-53813050 Msa1162890:three_prime_UTR 25.0%
! AAATATGTCATATTCCACAA+TGG - chr7_4:53813144-53813163 Msa1162890:CDS 25.0%
!! TAGGCTTTTATAGTAATTAG+TGG - chr7_4:53813609-53813628 Msa1162890:intron 25.0%
! ATATTATAGAGAGGAAAGTA+AGG - chr7_4:53813644-53813663 Msa1162890:intron 25.0%
!!! AATGTTTTTTGTTGTTGTTG+AGG - chr7_4:53813732-53813751 Msa1162890:intron 25.0%
!! GACATACATCTAAAAGTTTT+TGG + chr7_4:53813910-53813929 None:intergenic 25.0%
!! ACTAACATTTTACATGTTTC+TGG + chr7_4:53813959-53813978 None:intergenic 25.0%
!! AACTTTTTAACCTTTCTTTC+TGG + chr7_4:53814219-53814238 None:intergenic 25.0%
! AGAAAGGTTAAAAAGTTTGA+TGG - chr7_4:53814222-53814241 Msa1162890:intron 25.0%
! ATATGCACTCAAAAATTTAG+TGG - chr7_4:53814312-53814331 Msa1162890:intron 25.0%
! TTTGATGAGTCACAATATAT+AGG + chr7_4:53814356-53814375 None:intergenic 25.0%
!! TTATTTCTCAAAGAAATGGA+TGG + chr7_4:53814415-53814434 None:intergenic 25.0%
! CATTAATTTCGTTTGAGAAA+TGG - chr7_4:53814515-53814534 Msa1162890:intron 25.0%
! TCTTATATATTGTTCCAACA+AGG + chr7_4:53814547-53814566 None:intergenic 25.0%
! GTTGGAACAATATATAAGAA+TGG - chr7_4:53814548-53814567 Msa1162890:intron 25.0%
!!! ACTCTTTTTAAGATGCTTTT+TGG - chr7_4:53814630-53814649 Msa1162890:intron 25.0%
!!! CAGATGTGTTGTTTTATATT+GGG + chr7_4:53814697-53814716 None:intergenic 25.0%
!!! ATTCGTTGATAGATAAGTTT+TGG - chr7_4:53814874-53814893 Msa1162890:intron 25.0%
!! TTAGTAATGCAATTTTGCAT+TGG + chr7_4:53815292-53815311 None:intergenic 25.0%
! AATGCAAAATTGCATTACTA+AGG - chr7_4:53815291-53815310 Msa1162890:intron 25.0%
! ATGCAAAATTGCATTACTAA+GGG - chr7_4:53815292-53815311 Msa1162890:intron 25.0%
! CGTAATTAACTGAATTATTG+AGG + chr7_4:53815402-53815421 None:intergenic 25.0%
! AATTCAGTTAATTACGTTAC+TGG - chr7_4:53815406-53815425 Msa1162890:intron 25.0%
! ACAAATCTACCTTAAATTAG+TGG - chr7_4:53815456-53815475 Msa1162890:intron 25.0%
!!! TTGAATTAATTGGTTTGTGA+CGG + chr7_4:53815593-53815612 None:intergenic 25.0%
!!! TTTTGTTTGAAATTGAAGTG+CGG + chr7_4:53815862-53815881 None:intergenic 25.0%
!! GAAAAAAGTATAAAATCGGA+AGG + chr7_4:53815941-53815960 None:intergenic 25.0%
! AACAAAACACAAAATGAGAA+TGG + chr7_4:53815967-53815986 None:intergenic 25.0%
!! TCATTTCTTTTCATCTCTTT+TGG - chr7_4:53816370-53816389 Msa1162890:intron 25.0%
!! TGAAGAAAAATTGGAGTTTT+AGG - chr7_4:53816450-53816469 Msa1162890:intron 25.0%
!! TGTTTAGTTTCTGTTGTTTA+TGG - chr7_4:53816771-53816790 Msa1162890:intron 25.0%
!! GTTTAGTTTCTGTTGTTTAT+GGG - chr7_4:53816772-53816791 Msa1162890:intron 25.0%
!!! AGTTTGCTATATGTATATTC+TGG - chr7_4:53816818-53816837 Msa1162890:intron 25.0%
!!! TTTGGTGAGGTTTTTAATTA+GGG - chr7_4:53816863-53816882 Msa1162890:intron 25.0%
!! CTTTAGTGATATATAGCTTT+TGG - chr7_4:53816963-53816982 Msa1162890:intron 25.0%
!! CAAGACAATTAGTTTCAAAA+AGG + chr7_4:53817003-53817022 None:intergenic 25.0%
! CCAAAATCTACTCTTAAATT+GGG + chr7_4:53817111-53817130 None:intergenic 25.0%
! TCCAAAATCTACTCTTAAAT+TGG + chr7_4:53817112-53817131 None:intergenic 25.0%
! CTGATGGAAATGTTATATAA+TGG - chr7_4:53817267-53817286 Msa1162890:intron 25.0%
!! GGAAATGTTATATAATGGAA+AGG - chr7_4:53817272-53817291 Msa1162890:intron 25.0%
! TCTATGTCTTTATGTTTATG+TGG + chr7_4:53817368-53817387 None:intergenic 25.0%
! TTTGTAACAAAGCTTAAATC+TGG + chr7_4:53817545-53817564 None:intergenic 25.0%
!! GCTTTGTTACAAACAATATA+TGG - chr7_4:53817552-53817571 Msa1162890:intron 25.0%
!!! TACTATTTAGCTTTTTCTGA+AGG + chr7_4:53818058-53818077 None:intergenic 25.0%
!!! TTCTTAGTTTTCTAGATTGT+AGG - chr7_4:53818288-53818307 Msa1162890:five_prime_UTR 25.0%
GTAAAACACCTAACTGATAA+TGG - chr7_4:53813116-53813135 Msa1162890:CDS 30.0%
TTTGTGTTCCATTATCAGTT+AGG + chr7_4:53813127-53813146 None:intergenic 30.0%
ATCTCCTTTAGTGTAATCAA+CGG - chr7_4:53813168-53813187 Msa1162890:CDS 30.0%
! TATTCCGTTGATTACACTAA+AGG + chr7_4:53813175-53813194 None:intergenic 30.0%
! TTCACTGATGGACAATTTAA+TGG + chr7_4:53813316-53813335 None:intergenic 30.0%
TTACACTTCTATATCACAAG+AGG + chr7_4:53813371-53813390 None:intergenic 30.0%
! TAAAAAATGCGTTGCCATTT+GGG + chr7_4:53813471-53813490 None:intergenic 30.0%
TGTCATGAAAGTAAAAGTGA+AGG - chr7_4:53813545-53813564 Msa1162890:intron 30.0%
TTTATAGTAATTAGTGGCAG+TGG - chr7_4:53813615-53813634 Msa1162890:intron 30.0%
TACTATGAAAAATGTCCGAT+CGG - chr7_4:53813779-53813798 Msa1162890:intron 30.0%
AATTGAAATATACCACCGAT+CGG + chr7_4:53813797-53813816 None:intergenic 30.0%
GTGGTATATTTCAATTCGTT+TGG - chr7_4:53813801-53813820 Msa1162890:intron 30.0%
GCCTATTTATATATTAGGTG+TGG - chr7_4:53813830-53813849 Msa1162890:intron 30.0%
GCCACACCTAATATATAAAT+AGG + chr7_4:53813834-53813853 None:intergenic 30.0%
AGATGTATGTCAAAATATGG+TGG - chr7_4:53813919-53813938 Msa1162890:intron 30.0%
TTAATGAGACCTTGAGAAAT+AGG - chr7_4:53814093-53814112 Msa1162890:intron 30.0%
TAATTTCCATTTCTCCGAAA+AGG - chr7_4:53814175-53814194 Msa1162890:intron 30.0%
AATTTCCATTTCTCCGAAAA+GGG - chr7_4:53814176-53814195 Msa1162890:intron 30.0%
AGGTTAAAAAGTTTGATGGA+TGG - chr7_4:53814226-53814245 Msa1162890:intron 30.0%
! TAGTGGATCTCATATTTAGT+TGG - chr7_4:53814329-53814348 Msa1162890:intron 30.0%
AGCGGAAAAAAAACACATTA+AGG + chr7_4:53814381-53814400 None:intergenic 30.0%
TGTAGACACGAAAATGATAT+TGG + chr7_4:53814479-53814498 None:intergenic 30.0%
TTTAGCTACCAAGGAAATTA+CGG - chr7_4:53814582-53814601 Msa1162890:intron 30.0%
! ATAGTCTGCTTGCATAATTT+TGG + chr7_4:53814662-53814681 None:intergenic 30.0%
!!! GCAGATGTGTTGTTTTATAT+TGG + chr7_4:53814698-53814717 None:intergenic 30.0%
TTGTCTAAGTACCATATTCA+GGG + chr7_4:53814777-53814796 None:intergenic 30.0%
! CAATTCTTAATGAGGCATTA+AGG + chr7_4:53815015-53815034 None:intergenic 30.0%
CTTAATGCCTCATTAAGAAT+TGG - chr7_4:53815013-53815032 Msa1162890:intron 30.0%
! TGTTTTCAAACACATGTTGA+TGG - chr7_4:53815084-53815103 Msa1162890:intron 30.0%
! GTTTTCAAACACATGTTGAT+GGG - chr7_4:53815085-53815104 Msa1162890:intron 30.0%
TTTGTCAATTGCAATACTGA+CGG + chr7_4:53815441-53815460 None:intergenic 30.0%
AATCTACCTTAAATTAGTGG+CGG - chr7_4:53815459-53815478 Msa1162890:intron 30.0%
AAAAATCCGCCACTAATTTA+AGG + chr7_4:53815468-53815487 None:intergenic 30.0%
ATGTGCAACATCATTATTGA+CGG + chr7_4:53815492-53815511 None:intergenic 30.0%
!! TTCATCTCATTTTGGAAGAA+GGG - chr7_4:53815697-53815716 Msa1162890:intron 30.0%
!!! GAAAATACCGATTTTGTTTG+AGG + chr7_4:53815799-53815818 None:intergenic 30.0%
TAAAATCGGAAGGATCTAAA+CGG + chr7_4:53815931-53815950 None:intergenic 30.0%
TTTGATTGGACTGTGTAATT+AGG - chr7_4:53816144-53816163 Msa1162890:intron 30.0%
AATGAATTACTACACATGCA+TGG + chr7_4:53816355-53816374 None:intergenic 30.0%
AAGAAACAACAAGATTGTAG+TGG + chr7_4:53816489-53816508 None:intergenic 30.0%
!! GTTGTTTCTTTCCTCTAATA+AGG - chr7_4:53816499-53816518 Msa1162890:intron 30.0%
TGAGAAATTCACCTTATTAG+AGG + chr7_4:53816513-53816532 None:intergenic 30.0%
ATAGAGCTTAAAACCCTAAT+AGG - chr7_4:53816605-53816624 Msa1162890:intron 30.0%
GTGTTCTTGTTGCTAATATT+TGG - chr7_4:53816645-53816664 Msa1162890:intron 30.0%
!! CTTTGGTGAGGTTTTTAATT+AGG - chr7_4:53816862-53816881 Msa1162890:intron 30.0%
! CCCAATTTAAGAGTAGATTT+TGG - chr7_4:53817108-53817127 Msa1162890:intron 30.0%
AAATCTCTGATAGCAAGATA+AGG + chr7_4:53817157-53817176 None:intergenic 30.0%
ACTAGCAACATTATATCACA+GGG + chr7_4:53817191-53817210 None:intergenic 30.0%
AACTAGCAACATTATATCAC+AGG + chr7_4:53817192-53817211 None:intergenic 30.0%
ATATATGGCTGTTAGAAAAC+TGG - chr7_4:53817567-53817586 Msa1162890:intron 30.0%
! GAGTGTTTGAATTTCTGTTT+TGG - chr7_4:53817706-53817725 Msa1162890:five_prime_UTR 30.0%
!! TGGATGATTGTTTCTTTTCA+AGG - chr7_4:53817747-53817766 Msa1162890:five_prime_UTR 30.0%
CGCAAAGAAAAGAAATACAA+GGG + chr7_4:53817792-53817811 None:intergenic 30.0%
TCGCAAAGAAAAGAAATACA+AGG + chr7_4:53817793-53817812 None:intergenic 30.0%
!! ATAGATGTTGAGTGTTTTGA+AGG - chr7_4:53817872-53817891 Msa1162890:five_prime_UTR 30.0%
TATAAAGACATCACCACTAA+TGG - chr7_4:53817970-53817989 Msa1162890:five_prime_UTR 30.0%
TCTATATCACAAGAGGAGAT+GGG + chr7_4:53813364-53813383 None:intergenic 35.0%
TTCTATATCACAAGAGGAGA+TGG + chr7_4:53813365-53813384 None:intergenic 35.0%
TGAATCAAAACTTGTGGGTA+AGG + chr7_4:53813404-53813423 None:intergenic 35.0%
GAACGTGAATCAAAACTTGT+GGG + chr7_4:53813409-53813428 None:intergenic 35.0%
!!! CACAAGTTTTGATTCACGTT+CGG - chr7_4:53813408-53813427 Msa1162890:CDS 35.0%
!!! ACAAGTTTTGATTCACGTTC+GGG - chr7_4:53813409-53813428 Msa1162890:CDS 35.0%
GTAAAAAATGCGTTGCCATT+TGG + chr7_4:53813472-53813491 None:intergenic 35.0%
!!! GCATTTTTTACCTTGCCATT+GGG - chr7_4:53813481-53813500 Msa1162890:CDS 35.0%
! ACAAATACCATGCTAGGTTT+TGG - chr7_4:53813511-53813530 Msa1162890:intron 35.0%
TTACTTTCATGACATCGTGT+CGG + chr7_4:53813539-53813558 None:intergenic 35.0%
TCTTGAAAACCCAACATTGT+TGG - chr7_4:53813583-53813602 Msa1162890:intron 35.0%
CTTGAAAACCCAACATTGTT+GGG - chr7_4:53813584-53813603 Msa1162890:intron 35.0%
TTGAAAACCCAACATTGTTG+GGG - chr7_4:53813585-53813604 Msa1162890:intron 35.0%
GTTCAAAGAAATGAGAATCG+TGG - chr7_4:53813666-53813685 Msa1162890:intron 35.0%
TAGTTCATTCACATCAACCA+TGG + chr7_4:53813710-53813729 None:intergenic 35.0%
!! TAGAAGTGTCCTATTTCTCA+AGG + chr7_4:53814105-53814124 None:intergenic 35.0%
!! AACTCAAGTGGGTTGTTATT+AGG - chr7_4:53814151-53814170 Msa1162890:intron 35.0%
! TAAGTGATGACATCCCTTTT+CGG + chr7_4:53814192-53814211 None:intergenic 35.0%
!!! TGGATGGTTTTGTAATTGAG+CGG + chr7_4:53814399-53814418 None:intergenic 35.0%
TACCATCTTGATCCATTTGA+TGG - chr7_4:53814447-53814466 Msa1162890:intron 35.0%
TTCCATCAAATGGATCAAGA+TGG + chr7_4:53814452-53814471 None:intergenic 35.0%
!! TATTGGTGGATTCCATCAAA+TGG + chr7_4:53814462-53814481 None:intergenic 35.0%
AGACACGAAAATGATATTGG+TGG + chr7_4:53814476-53814495 None:intergenic 35.0%
AGAAATGGATATGACCTTGT+TGG - chr7_4:53814530-53814549 Msa1162890:intron 35.0%
!!! CGAAAGTATTTTAGCTACCA+AGG - chr7_4:53814573-53814592 Msa1162890:intron 35.0%
!! TTCAGGGTGTATTTCTAGAA+TGG + chr7_4:53814761-53814780 None:intergenic 35.0%
CTAGAAATACACCCTGAATA+TGG - chr7_4:53814763-53814782 Msa1162890:intron 35.0%
GTTGTCTAAGTACCATATTC+AGG + chr7_4:53814778-53814797 None:intergenic 35.0%
!! CTTTGGTTAATTTGTTCCTC+CGG + chr7_4:53814830-53814849 None:intergenic 35.0%
GGAGGAACAAATTAACCAAA+GGG - chr7_4:53814829-53814848 Msa1162890:intron 35.0%
GAGGAACAAATTAACCAAAG+GGG - chr7_4:53814830-53814849 Msa1162890:intron 35.0%
! TTCTTAATGAGGCATTAAGG+AGG + chr7_4:53815012-53815031 None:intergenic 35.0%
TTATGCGCCAATTCTTAATG+AGG + chr7_4:53815023-53815042 None:intergenic 35.0%
! TTGCATTGGTCACTAATTTG+AGG + chr7_4:53815278-53815297 None:intergenic 35.0%
TTTAGACCCTCAGTAATTAC+TGG - chr7_4:53815316-53815335 Msa1162890:intron 35.0%
! GGTTTTTGTTGCATTACTGA+TGG + chr7_4:53815351-53815370 None:intergenic 35.0%
ACCCTCAATAACATTACTGA+CGG - chr7_4:53815368-53815387 Msa1162890:intron 35.0%
TCCGTCAGTAATGTTATTGA+GGG + chr7_4:53815372-53815391 None:intergenic 35.0%
TTCCGTCAGTAATGTTATTG+AGG + chr7_4:53815373-53815392 None:intergenic 35.0%
TCAGTTAATTACGTTACTGG+CGG - chr7_4:53815409-53815428 Msa1162890:intron 35.0%
GTCAATAATGATGTTGCACA+TGG - chr7_4:53815491-53815510 Msa1162890:intron 35.0%
!! TTGGTTTGTGACGGAATAAA+GGG + chr7_4:53815584-53815603 None:intergenic 35.0%
!! ATTGGTTTGTGACGGAATAA+AGG + chr7_4:53815585-53815604 None:intergenic 35.0%
AGAAACAAAAGACACGCATT+TGG - chr7_4:53815649-53815668 Msa1162890:intron 35.0%
! TGGGTTTCTTCATCTCATTT+TGG - chr7_4:53815689-53815708 Msa1162890:intron 35.0%
!! CTTCATCTCATTTTGGAAGA+AGG - chr7_4:53815696-53815715 Msa1162890:intron 35.0%
!! TCATCTCATTTTGGAAGAAG+GGG - chr7_4:53815698-53815717 Msa1162890:intron 35.0%
!!! AATACCGATTTTGTTTGAGG+AGG + chr7_4:53815796-53815815 None:intergenic 35.0%
TTTCTTAATGCTTCGATCTG+AGG - chr7_4:53815891-53815910 Msa1162890:intron 35.0%
TTCTTAATGCTTCGATCTGA+GGG - chr7_4:53815892-53815911 Msa1162890:intron 35.0%
TCGCATGGTAAATTTGGAAA+CGG + chr7_4:53816015-53816034 None:intergenic 35.0%
AATCGATCGCATGGTAAATT+TGG + chr7_4:53816021-53816040 None:intergenic 35.0%
ATTGGACTGTGTAATTAGGT+CGG - chr7_4:53816148-53816167 Msa1162890:intron 35.0%
ATCAAGGAAGTGAAGAGAAA+TGG - chr7_4:53816171-53816190 Msa1162890:intron 35.0%
TCAAGGAAGTGAAGAGAAAT+GGG - chr7_4:53816172-53816191 Msa1162890:intron 35.0%
! CATTACTGAACAGCTTTTCA+TGG + chr7_4:53816249-53816268 None:intergenic 35.0%
CATGAAAAGCTGTTCAGTAA+TGG - chr7_4:53816247-53816266 Msa1162890:intron 35.0%
!! CTTTTCTGGAAGTTGGTTAA+TGG + chr7_4:53816313-53816332 None:intergenic 35.0%
!!! CTCTTTTGGTTGATAGAAGA+TGG - chr7_4:53816384-53816403 Msa1162890:intron 35.0%
ACAAGAGGAACAAAAGCAAA+AGG - chr7_4:53816417-53816436 Msa1162890:intron 35.0%
CAAGAGGAACAAAAGCAAAA+GGG - chr7_4:53816418-53816437 Msa1162890:intron 35.0%
! AACAACAAGATTGTAGTGGA+TGG + chr7_4:53816485-53816504 None:intergenic 35.0%
GGAAACTGAGATTCTTTCTT+AGG - chr7_4:53816557-53816576 Msa1162890:intron 35.0%
AGAACACTAAACCACTAACA+GGG + chr7_4:53816632-53816651 None:intergenic 35.0%
AAGAACACTAAACCACTAAC+AGG + chr7_4:53816633-53816652 None:intergenic 35.0%
! CAACACCAGTTCGTTTATTT+TGG - chr7_4:53816737-53816756 Msa1162890:intron 35.0%
!!! ACCAGTTCGTTTATTTTGGT+AGG - chr7_4:53816741-53816760 Msa1162890:intron 35.0%
!!! CCAGTTCGTTTATTTTGGTA+GGG - chr7_4:53816742-53816761 Msa1162890:intron 35.0%
! AATTAGGGTGTTACGCATAT+TGG - chr7_4:53816878-53816897 Msa1162890:intron 35.0%
TATGTCTGCGTAATGTAATG+TGG - chr7_4:53817039-53817058 Msa1162890:intron 35.0%
CTATGTAAGTGAACACAATG+TGG + chr7_4:53817239-53817258 None:intergenic 35.0%
TTACATAGCTCTCAATCTGA+TGG - chr7_4:53817251-53817270 Msa1162890:intron 35.0%
GTTACATAGAGATGTCACAT+AGG - chr7_4:53817294-53817313 Msa1162890:intron 35.0%
! CTGATGTATGTTTTTCTGCA+CGG - chr7_4:53817658-53817677 Msa1162890:CDS 35.0%
!!! ACCTGCATATTTTGGTGTTA+GGG - chr7_4:53817684-53817703 Msa1162890:CDS 35.0%
GGCAGTGTTTATGATTGTTA+TGG - chr7_4:53817727-53817746 Msa1162890:five_prime_UTR 35.0%
! TTTCTTTTCTTTGCGAGAGT+TGG - chr7_4:53817797-53817816 Msa1162890:five_prime_UTR 35.0%
!!! ATGTTGAGTGTTTTGAAGGA+GGG - chr7_4:53817876-53817895 Msa1162890:five_prime_UTR 35.0%
!! TTTTCTGAAGGTGCACAAAT+AGG + chr7_4:53818046-53818065 None:intergenic 35.0%
GATCATGAGTGAACCTGTTA+GGG + chr7_4:53813263-53813282 None:intergenic 40.0%
TGATCATGAGTGAACCTGTT+AGG + chr7_4:53813264-53813283 None:intergenic 40.0%
! GGAAGCACACTTAGCATATT+GGG + chr7_4:53813295-53813314 None:intergenic 40.0%
! TGGAAGCACACTTAGCATAT+TGG + chr7_4:53813296-53813315 None:intergenic 40.0%
! ACTAATGATGGTGATGACCA+TGG + chr7_4:53813341-53813360 None:intergenic 40.0%
CGAACGTGAATCAAAACTTG+TGG + chr7_4:53813410-53813429 None:intergenic 40.0%
!!! CGCATTTTTTACCTTGCCAT+TGG - chr7_4:53813480-53813499 Msa1162890:CDS 40.0%
GTATTTGTAGCTGAACCCAA+TGG + chr7_4:53813499-53813518 None:intergenic 40.0%
TCAGCTACAAATACCATGCT+AGG - chr7_4:53813505-53813524 Msa1162890:intron 40.0%
TACTTTCATGACATCGTGTC+GGG + chr7_4:53813538-53813557 None:intergenic 40.0%
TGGCAAGGGATATTATAGAG+AGG - chr7_4:53813635-53813654 Msa1162890:intron 40.0%
! GCATGATGAGAATTTTGCCA+TGG - chr7_4:53813690-53813709 Msa1162890:intron 40.0%
TATGAAAAATGTCCGATCGG+TGG - chr7_4:53813782-53813801 Msa1162890:intron 40.0%
ACTACCATGCTTAACTCAAG+TGG - chr7_4:53814139-53814158 Msa1162890:intron 40.0%
CTACCATGCTTAACTCAAGT+GGG - chr7_4:53814140-53814159 Msa1162890:intron 40.0%
CACTTACGATCCAGAAAGAA+AGG - chr7_4:53814206-53814225 Msa1162890:intron 40.0%
CGTGTCTACATCTCTTCAAA+TGG - chr7_4:53814489-53814508 Msa1162890:intron 40.0%
ACTGAGACTACTCTAACTTC+CGG - chr7_4:53814808-53814827 Msa1162890:intron 40.0%
CGGAGGAACAAATTAACCAA+AGG - chr7_4:53814828-53814847 Msa1162890:intron 40.0%
GAACAAATTAACCAAAGGGG+CGG - chr7_4:53814833-53814852 Msa1162890:intron 40.0%
!! TTTTGGTGTGAAGACAAGTG+AGG - chr7_4:53814891-53814910 Msa1162890:intron 40.0%
! TTTGGTGTGAAGACAAGTGA+GGG - chr7_4:53814892-53814911 Msa1162890:intron 40.0%
TATTAGTGCAAGAGCCAAAG+AGG - chr7_4:53814928-53814947 Msa1162890:intron 40.0%
AAAGAGGCAACCAAAATGGA+GGG - chr7_4:53814944-53814963 Msa1162890:intron 40.0%
ATGGGATCATTTGATCATCG+TGG - chr7_4:53814967-53814986 Msa1162890:intron 40.0%
TGGGATCATTTGATCATCGT+GGG - chr7_4:53814968-53814987 Msa1162890:intron 40.0%
ATTCCGCCAGTAATTACTGA+GGG + chr7_4:53815325-53815344 None:intergenic 40.0%
TATTCCGCCAGTAATTACTG+AGG + chr7_4:53815326-53815345 None:intergenic 40.0%
! ACATGGCATTGAACTACTGA+CGG - chr7_4:53815508-53815527 Msa1162890:intron 40.0%
ATGAAGAAACCCAGATGTGT+GGG + chr7_4:53815682-53815701 None:intergenic 40.0%
ACGTCCTCCTCAAACAAAAT+CGG - chr7_4:53815789-53815808 Msa1162890:intron 40.0%
TGTGTAATTAGGTCGGATCA+AGG - chr7_4:53816155-53816174 Msa1162890:intron 40.0%
CAAGGAAGTGAAGAGAAATG+GGG - chr7_4:53816173-53816192 Msa1162890:intron 40.0%
!! CATGGAAGCTTTGCTATTCA+TGG + chr7_4:53816231-53816250 None:intergenic 40.0%
GTAATGGTTCTCTTCTCTCT+CGG - chr7_4:53816263-53816282 Msa1162890:intron 40.0%
TAATGGTTCTCTTCTCTCTC+GGG - chr7_4:53816264-53816283 Msa1162890:intron 40.0%
! TCTGGAAGTTGGTTAATGGA+GGG + chr7_4:53816309-53816328 None:intergenic 40.0%
! TTCTGGAAGTTGGTTAATGG+AGG + chr7_4:53816310-53816329 None:intergenic 40.0%
!! AAGGAAGCTTTTCTGGAAGT+TGG + chr7_4:53816320-53816339 None:intergenic 40.0%
! TTCATGGAAGGAAGCTTTTC+TGG + chr7_4:53816327-53816346 None:intergenic 40.0%
CCCTACCAAAATAAACGAAC+TGG + chr7_4:53816745-53816764 None:intergenic 40.0%
! TTCTGTTGTTTATGGGAGTG+AGG - chr7_4:53816779-53816798 Msa1162890:intron 40.0%
!!! GACCTGCATATTTTGGTGTT+AGG - chr7_4:53817683-53817702 Msa1162890:CDS 40.0%
TCCCTAACACCAAAATATGC+AGG + chr7_4:53817688-53817707 None:intergenic 40.0%
!!! GATGTTGAGTGTTTTGAAGG+AGG - chr7_4:53817875-53817894 Msa1162890:five_prime_UTR 40.0%
CCATCTCTTTGATCCACTTT+AGG + chr7_4:53818021-53818040 None:intergenic 40.0%
CCTAAAGTGGATCAAAGAGA+TGG - chr7_4:53818018-53818037 Msa1162890:five_prime_UTR 40.0%
! GTTCCTTTGGTTCCTTATTC+CGG - chr7_4:53818175-53818194 Msa1162890:five_prime_UTR 40.0%
AAACCGGAATAAGGAACCAA+AGG + chr7_4:53818181-53818200 None:intergenic 40.0%
TTTGTGGAAGTGGAGGAAAT+AGG - chr7_4:53818198-53818217 Msa1162890:five_prime_UTR 40.0%
TTTGATCTTGATCTCCCTCT+CGG + chr7_4:53818235-53818254 None:intergenic 40.0%
CACTAAAGGAGATGCCATTG+TGG + chr7_4:53813161-53813180 None:intergenic 45.0%
! GAGCTTTTCGTTTCGTACGT+GGG + chr7_4:53813216-53813235 None:intergenic 45.0%
GAGTGAACCTGTTAGGGAAA+TGG + chr7_4:53813257-53813276 None:intergenic 45.0%
TTGTCCATCAGTGAATGCCA+TGG - chr7_4:53813321-53813340 Msa1162890:intron 45.0%
ATGACCATGGCATTCACTGA+TGG + chr7_4:53813328-53813347 None:intergenic 45.0%
AGAGGAGATGGGACTAATGA+TGG + chr7_4:53813353-53813372 None:intergenic 45.0%
AAACTTGTGGGTAAGGCTCA+AGG + chr7_4:53813397-53813416 None:intergenic 45.0%
AACCCAACATTGTTGGGGAT+AGG - chr7_4:53813590-53813609 Msa1162890:intron 45.0%
AGCCTATCCCCAACAATGTT+GGG + chr7_4:53813595-53813614 None:intergenic 45.0%
AAGCCTATCCCCAACAATGT+TGG + chr7_4:53813596-53813615 None:intergenic 45.0%
AGTAATTAGTGGCAGTGGCA+AGG - chr7_4:53813620-53813639 Msa1162890:intron 45.0%
GTAATTAGTGGCAGTGGCAA+GGG - chr7_4:53813621-53813640 Msa1162890:intron 45.0%
CAACCCACTTGAGTTAAGCA+TGG + chr7_4:53814146-53814165 None:intergenic 45.0%
! GACATCCCTTTTCGGAGAAA+TGG + chr7_4:53814184-53814203 None:intergenic 45.0%
ACTCATGGCCGTAATTTCCT+TGG + chr7_4:53814593-53814612 None:intergenic 45.0%
ATTAACCAAAGGGGCGGAAA+AGG - chr7_4:53814839-53814858 Msa1162890:intron 45.0%
AGCCAAAGAGGCAACCAAAA+TGG - chr7_4:53814940-53814959 Msa1162890:intron 45.0%
!!! CTCCATTTTGGTTGCCTCTT+TGG + chr7_4:53814945-53814964 None:intergenic 45.0%
CAAAGAGGCAACCAAAATGG+AGG - chr7_4:53814943-53814962 Msa1162890:intron 45.0%
! ATGATCCCATCCCTCCATTT+TGG + chr7_4:53814957-53814976 None:intergenic 45.0%
AGACCCTCAGTAATTACTGG+CGG - chr7_4:53815319-53815338 Msa1162890:intron 45.0%
GATGAAGAAACCCAGATGTG+TGG + chr7_4:53815683-53815702 None:intergenic 45.0%
! TGCTTCGATCTGAGGGTTTT+CGG - chr7_4:53815899-53815918 Msa1162890:intron 45.0%
AAGAACGCAAATCGATCGCA+TGG + chr7_4:53816030-53816049 None:intergenic 45.0%
! AGTTGGTTAATGGAGGGTGT+GGG + chr7_4:53816303-53816322 None:intergenic 45.0%
! AAGTTGGTTAATGGAGGGTG+TGG + chr7_4:53816304-53816323 None:intergenic 45.0%
TGCATGGCTTGATTCATGGA+AGG + chr7_4:53816339-53816358 None:intergenic 45.0%
CACATGCATGGCTTGATTCA+TGG + chr7_4:53816343-53816362 None:intergenic 45.0%
GATGGAAATTCCAGCACAAG+AGG - chr7_4:53816402-53816421 Msa1162890:intron 45.0%
! TGCTTTTGTTCCTCTTGTGC+TGG + chr7_4:53816415-53816434 None:intergenic 45.0%
CCACTAACAGGGACCTATTA+GGG + chr7_4:53816621-53816640 None:intergenic 45.0%
ACCACTAACAGGGACCTATT+AGG + chr7_4:53816622-53816641 None:intergenic 45.0%
TGCAACCAGCAAAAACAGCT+GGG + chr7_4:53816707-53816726 None:intergenic 45.0%
TTGTTTATGGGAGTGAGGCA+TGG - chr7_4:53816784-53816803 Msa1162890:intron 45.0%
TATTCTGGCCTCATTGCTTG+TGG - chr7_4:53816833-53816852 Msa1162890:intron 45.0%
ATTGCTTGTGGCAGAGACTT+TGG - chr7_4:53816845-53816864 Msa1162890:intron 45.0%
! CACGGATGACCTGCATATTT+TGG - chr7_4:53817676-53817695 Msa1162890:CDS 45.0%
ACCACTAATGGCAGAAGCAA+TGG - chr7_4:53817982-53818001 Msa1162890:five_prime_UTR 45.0%
CCACTAATGGCAGAAGCAAT+GGG - chr7_4:53817983-53818002 Msa1162890:five_prime_UTR 45.0%
! GCGTCGATGATACAGATTAG+AGG + chr7_4:53818116-53818135 None:intergenic 45.0%
GAGCAGCATTCTGTTCTATG+TGG - chr7_4:53818150-53818169 Msa1162890:five_prime_UTR 45.0%
GTTCTATGTGGCTGTTCCTT+TGG - chr7_4:53818162-53818181 Msa1162890:five_prime_UTR 45.0%
! TGGTTCCTTATTCCGGTTTG+TGG - chr7_4:53818182-53818201 Msa1162890:five_prime_UTR 45.0%
CACTTCCACAAACCGGAATA+AGG + chr7_4:53818190-53818209 None:intergenic 45.0%
! CTTATTCCGGTTTGTGGAAG+TGG - chr7_4:53818188-53818207 Msa1162890:five_prime_UTR 45.0%
TTTCCTCCACTTCCACAAAC+CGG + chr7_4:53818197-53818216 None:intergenic 45.0%
TTTCGTACGTGGGTATGCTC+AGG + chr7_4:53813206-53813225 None:intergenic 50.0%
! GGAGCTTTTCGTTTCGTACG+TGG + chr7_4:53813217-53813236 None:intergenic 50.0%
GTTAGGGAAATGGCCATCGT+TGG + chr7_4:53813247-53813266 None:intergenic 50.0%
ACGATGGCCATTTCCCTAAC+AGG - chr7_4:53813247-53813266 Msa1162890:intron 50.0%
! ATTTGGGACAGTTGTGGCGA+TGG + chr7_4:53813455-53813474 None:intergenic 50.0%
ATCGCCACAACTGTCCCAAA+TGG - chr7_4:53813454-53813473 Msa1162890:CDS 50.0%
! GTTGCCATTTGGGACAGTTG+TGG + chr7_4:53813461-53813480 None:intergenic 50.0%
TGTAGCTGAACCCAATGGCA+AGG + chr7_4:53813494-53813513 None:intergenic 50.0%
GAGACTACTCTAACTTCCGG+AGG - chr7_4:53814811-53814830 Msa1162890:intron 50.0%
AGGCAACCAAAATGGAGGGA+TGG - chr7_4:53814948-53814967 Msa1162890:intron 50.0%
GGCAACCAAAATGGAGGGAT+GGG - chr7_4:53814949-53814968 Msa1162890:intron 50.0%
TCGCATGCGCAAATCACTAG+AGG - chr7_4:53815049-53815068 Msa1162890:intron 50.0%
CGCATGCGCAAATCACTAGA+GGG - chr7_4:53815050-53815069 Msa1162890:intron 50.0%
GCATGCGCAAATCACTAGAG+GGG - chr7_4:53815051-53815070 Msa1162890:intron 50.0%
ATGGGTGCAAACATGTGACG+AGG - chr7_4:53815103-53815122 Msa1162890:intron 50.0%
ATGACGACAATGATGTCGCC+GGG + chr7_4:53815236-53815255 None:intergenic 50.0%
CATGACGACAATGATGTCGC+CGG + chr7_4:53815237-53815256 None:intergenic 50.0%
!! TAAAGGGCTACTGGCGGATT+TGG + chr7_4:53815568-53815587 None:intergenic 50.0%
ACGGAATAAAGGGCTACTGG+CGG + chr7_4:53815574-53815593 None:intergenic 50.0%
! GTGACGGAATAAAGGGCTAC+TGG + chr7_4:53815577-53815596 None:intergenic 50.0%
TGGCTTTCTACCCACACATC+TGG - chr7_4:53815669-53815688 Msa1162890:intron 50.0%
GGCTTTCTACCCACACATCT+GGG - chr7_4:53815670-53815689 Msa1162890:intron 50.0%
AGCATGATTGAGCACGTGAG+AGG + chr7_4:53815753-53815772 None:intergenic 50.0%
! GTTAATGGAGGGTGTGGGTT+CGG + chr7_4:53816298-53816317 None:intergenic 50.0%
CCCTAATAGGTCCCTGTTAG+TGG - chr7_4:53816618-53816637 Msa1162890:intron 50.0%
ACAGCAAGCACACACACATC+AGG + chr7_4:53816683-53816702 None:intergenic 50.0%
GCAACCAGCAAAAACAGCTG+GGG + chr7_4:53816706-53816725 None:intergenic 50.0%
CTGCAACCAGCAAAAACAGC+TGG + chr7_4:53816708-53816727 None:intergenic 50.0%
AGTCTCTGCCACAAGCAATG+AGG + chr7_4:53816844-53816863 None:intergenic 50.0%
TTGTGGCAGAGACTTTGGTG+AGG - chr7_4:53816850-53816869 Msa1162890:intron 50.0%
!! GCAAGAAGCACTAAAGCTCG+CGG + chr7_4:53816929-53816948 None:intergenic 50.0%
!! TTGAAGGAGGGTCGACTTGT+TGG - chr7_4:53817888-53817907 Msa1162890:five_prime_UTR 50.0%
!! TGAAGGAGGGTCGACTTGTT+GGG - chr7_4:53817889-53817908 Msa1162890:five_prime_UTR 50.0%
CCCATTGCTTCTGCCATTAG+TGG + chr7_4:53817986-53818005 None:intergenic 50.0%
CAGAAGCAATGGGAGTGAGA+TGG - chr7_4:53817993-53818012 Msa1162890:five_prime_UTR 50.0%
GAGTGAGATGGTGCCTAAAG+TGG - chr7_4:53818005-53818024 Msa1162890:five_prime_UTR 50.0%
! ATTCCGGTTTGTGGAAGTGG+AGG - chr7_4:53818191-53818210 Msa1162890:five_prime_UTR 50.0%
AGCTCCAGTTCCACCAACGA+TGG - chr7_4:53813231-53813250 Msa1162890:intron 55.0%
! ATGGCCATCGTTGGTGGAAC+TGG + chr7_4:53813238-53813257 None:intergenic 55.0%
AGGGAAATGGCCATCGTTGG+TGG + chr7_4:53813244-53813263 None:intergenic 55.0%
TGGATGACCCTTTGACGGCT+GGG + chr7_4:53813435-53813454 None:intergenic 55.0%
ATGGATGACCCTTTGACGGC+TGG + chr7_4:53813436-53813455 None:intergenic 55.0%
GGCGATGGATGACCCTTTGA+CGG + chr7_4:53813440-53813459 None:intergenic 55.0%
GTCGGGACCAAAACCTAGCA+TGG + chr7_4:53813521-53813540 None:intergenic 55.0%
CCTAGCTAGTCAGCGACTCA+TGG + chr7_4:53814608-53814627 None:intergenic 55.0%
! CCATGAGTCGCTGACTAGCT+AGG - chr7_4:53814605-53814624 Msa1162890:intron 55.0%
! CTTCTCCTTTTCCGCCCCTT+TGG + chr7_4:53814847-53814866 None:intergenic 55.0%
AGGCACGAGCTTGGACTATG+TGG + chr7_4:53815205-53815224 None:intergenic 55.0%
!!! CTGTCCCCAGCTGTTTTTGC+TGG - chr7_4:53816699-53816718 Msa1162890:intron 55.0%
!! GAAGGAGGGTCGACTTGTTG+GGG - chr7_4:53817890-53817909 Msa1162890:five_prime_UTR 55.0%
TAGGAGCGAAGATCACCGAG+AGG - chr7_4:53818217-53818236 Msa1162890:five_prime_UTR 55.0%
AGGAGCGAAGATCACCGAGA+GGG - chr7_4:53818218-53818237 Msa1162890:five_prime_UTR 55.0%
! ATCACTAGAGGGGCACGCGT+TGG - chr7_4:53815061-53815080 Msa1162890:intron 60.0%
GTCGGATCTAGGCACGAGCT+TGG + chr7_4:53815214-53815233 None:intergenic 60.0%
CGACAATGATGTCGCCGGGT+CGG + chr7_4:53815232-53815251 None:intergenic 60.0%
! AATGGAGGGTGTGGGTTCGG+TGG + chr7_4:53816295-53816314 None:intergenic 60.0%
GCACTAAAGCTCGCGGCGAA+AGG + chr7_4:53816922-53816941 None:intergenic 60.0%
!! AGGGTCGACTTGTTGGGGAC+TGG - chr7_4:53817895-53817914 Msa1162890:five_prime_UTR 60.0%
!! GTCGACTTGTTGGGGACTGG+TGG - chr7_4:53817898-53817917 Msa1162890:five_prime_UTR 60.0%
CTGGTGGCTCGCAACTGTGA+AGG - chr7_4:53817914-53817933 Msa1162890:five_prime_UTR 60.0%
GTTCGGGCCCAGCCGTCAAA+GGG - chr7_4:53813425-53813444 Msa1162890:CDS 65.0%
GCTCGTGCCTAGATCCGACC+CGG - chr7_4:53815215-53815234 Msa1162890:intron 65.0%
GATGTCGCCGGGTCGGATCT+AGG + chr7_4:53815225-53815244 None:intergenic 65.0%
CGTTCGGGCCCAGCCGTCAA+AGG - chr7_4:53813424-53813443 Msa1162890:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53812982 53818399 53812982 ID=Msa1162890;Name=Msa1162890
chr7_4 mRNA 53812982 53818399 53812982 ID=Msa1162890-mRNA-1;Parent=Msa1162890;Name=Msa1162890-mRNA-1;_AED=0.22;_eAED=0.22;_QI=694|0|0.66|1|0.5|0.66|3|127|126
chr7_4 exon 53812982 53813225 53812982 ID=Msa1162890-mRNA-1:exon:15587;Parent=Msa1162890-mRNA-1
chr7_4 exon 53813342 53813515 53813342 ID=Msa1162890-mRNA-1:exon:15586;Parent=Msa1162890-mRNA-1
chr7_4 exon 53817616 53818399 53817616 ID=Msa1162890-mRNA-1:exon:15585;Parent=Msa1162890-mRNA-1
chr7_4 five_prime_UTR 53817706 53818399 53817706 ID=Msa1162890-mRNA-1:five_prime_utr;Parent=Msa1162890-mRNA-1
chr7_4 CDS 53817616 53817705 53817616 ID=Msa1162890-mRNA-1:cds;Parent=Msa1162890-mRNA-1
chr7_4 CDS 53813342 53813515 53813342 ID=Msa1162890-mRNA-1:cds;Parent=Msa1162890-mRNA-1
chr7_4 CDS 53813109 53813225 53813109 ID=Msa1162890-mRNA-1:cds;Parent=Msa1162890-mRNA-1
chr7_4 three_prime_UTR 53812982 53813108 53812982 ID=Msa1162890-mRNA-1:three_prime_utr;Parent=Msa1162890-mRNA-1
Gene Sequence

>Msa1162890

ATGAGAATCGTGGAGCATGATGAGAATTTTGCCATGGTTGATGTGAATGAACTAAGAATGTTTTTTGTTGTTGTTGAGGATAATGAACTTATTAATATAGATGTTGAGTGTTTTGAAGGAGGGTCGACTTGTTGGGGACTGGTGGCTCGCAACTGTGAAGGCATTGTTAGTGCAACAGTCACTTTGAGAGAAAATATAAAGACATCACCACTAATGGCAGAAGCAATGGGAGTGAGATGGTGCCTAAAGTGGATCAAAGAGATGCATTCTGTTCTATGTGGCTGTTCCTTTGGTTCCTTATTCCGGTTTGTGGAAGTGGAGGAAATAGGAGCGAAGATCACCGAGAGGGAGATCAAGATCAAATTTGTCCGAATATTATGA
Protein sequence

>Msa1162890

MRIVEHDENFAMVDVNELRMFFVVVEDNELINIDVECFEGGSTCWGLVARNCEGIVSATVTLRENIKTSPLMAEAMGVRWCLKWIKEMHSVLCGCSFGSLFRFVEVEEIGAKITEREIKIKFVRIL*