Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163160 | XP_013457464.1 | 95.982 | 224 | 9 | 0 | 1 | 224 | 1 | 224 | 3.31e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163160 | sp|Q9ZPR0|COQ4_ARATH | 82.110 | 218 | 39 | 0 | 7 | 224 | 8 | 225 | 3.03e-136 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163160 | A0A072V061 | 95.982 | 224 | 9 | 0 | 1 | 224 | 1 | 224 | 1.58e-161 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1157930 | Msa1163160 | 0.801248 | 9.849555e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163160 | MtrunA17_Chr4g0053471 | 95.982 | 224 | 9 | 0 | 1 | 224 | 1 | 224 | 3.04e-165 | 454 |
| Msa1163160 | MtrunA17_Chr4g0053461 | 95.982 | 224 | 9 | 0 | 1 | 224 | 1 | 224 | 3.04e-165 | 454 |
| Msa1163160 | MtrunA17_Chr7g0259921 | 94.643 | 224 | 12 | 0 | 1 | 224 | 1 | 224 | 6.58e-163 | 448 |
| Msa1163160 | MtrunA17_Chr8g0359471 | 89.744 | 234 | 14 | 1 | 1 | 224 | 1 | 234 | 1.98e-158 | 437 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163160 | AT2G03690.1 | 82.110 | 218 | 39 | 0 | 7 | 224 | 8 | 225 | 3.08e-137 | 384 |
Find 109 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGATGTTCGCAGAAAAT+TGG | 0.183360 | 7_4:-54233922 | Msa1163160:CDS |
| TTCTGCAGTTGGAGCACTTT+TGG | 0.192691 | 7_4:-54235407 | Msa1163160:CDS |
| TGCTGCCTATGCTAGATTTA+TGG | 0.197792 | 7_4:-54234285 | Msa1163160:CDS |
| GCGATTATGCTTTCAATATC+TGG | 0.273260 | 7_4:+54233632 | None:intergenic |
| ACGGCGATTTCAACGGTTTA+GGG | 0.281508 | 7_4:+54237203 | None:intergenic |
| ATCTGGTCATACAATTATAT+TGG | 0.293972 | 7_4:+54233649 | None:intergenic |
| GACCTTCCCACTAACTTGAT+TGG | 0.314640 | 7_4:-54234146 | Msa1163160:CDS |
| AGTTAGTGGGAAGGTCAAAA+AGG | 0.318521 | 7_4:+54234153 | None:intergenic |
| CTCGTGAAGTCCATGACTTC+TGG | 0.336675 | 7_4:-54234181 | Msa1163160:CDS |
| ACCTTCCCACTAACTTGATT+GGG | 0.343228 | 7_4:-54234145 | Msa1163160:CDS |
| AAAACTCACCAACTAAATAT+TGG | 0.343716 | 7_4:+54233755 | None:intergenic |
| TCGACCTCCTGTGCGCTTCA+TGG | 0.344695 | 7_4:-54234237 | Msa1163160:CDS |
| CAATTACTGACCCTTCCTTC+AGG | 0.351137 | 7_4:+54235295 | None:intergenic |
| ATGTGTATGATGTCTGTTAT+AGG | 0.352816 | 7_4:-54234077 | Msa1163160:CDS |
| CAGCAGGCAGCTGTGGCATT+AGG | 0.356212 | 7_4:-54235430 | Msa1163160:CDS |
| AACGGCGATTTCAACGGTTT+AGG | 0.379634 | 7_4:+54237202 | None:intergenic |
| TTCCCCTGGGCTGTTCGTGC+TGG | 0.389198 | 7_4:-54234002 | Msa1163160:CDS |
| GCTGCCTATGCTAGATTTAT+GGG | 0.389321 | 7_4:-54234284 | Msa1163160:CDS |
| CGCACAGGAGGTCGATCATC+TGG | 0.389514 | 7_4:+54234245 | None:intergenic |
| GAAGATGTTCGCAGAAAATT+GGG | 0.391822 | 7_4:-54233921 | Msa1163160:CDS |
| TGTGTATGATGTCTGTTATA+GGG | 0.393794 | 7_4:-54234076 | Msa1163160:CDS |
| ATTGGTTGAAGAATCACTAT+AGG | 0.395578 | 7_4:+54233667 | None:intergenic |
| ATCATCTGGTGAAAAGTTCC+TGG | 0.401339 | 7_4:+54234259 | None:intergenic |
| CTAACTATTTCTCACATTCT+CGG | 0.401850 | 7_4:-54237122 | Msa1163160:five_prime_UTR |
| TTTATCAACACTACTTCCCC+TGG | 0.424751 | 7_4:-54234016 | Msa1163160:CDS |
| CCTTTGAAGAACCCTTTCAT+AGG | 0.432927 | 7_4:+54235330 | None:intergenic |
| GCAGCTCTTGGTGAAACAAC+TGG | 0.444204 | 7_4:-54235361 | Msa1163160:CDS |
| GACCTGCCAGCTAATACATT+TGG | 0.445028 | 7_4:-54234308 | Msa1163160:CDS |
| CCTCCTCTGTCCAACACATC+AGG | 0.450097 | 7_4:-54236991 | Msa1163160:intron |
| TGAAGAACCCTTTCATAGGC+AGG | 0.452590 | 7_4:+54235334 | None:intergenic |
| AGTCAAGGAATAGCAGGAAC+AGG | 0.463454 | 7_4:+54233891 | None:intergenic |
| AGCTATCTCCAATATTTAGT+TGG | 0.467593 | 7_4:-54233763 | Msa1163160:three_prime_UTR |
| TGCGAATGTAGGACATGCTT+GGG | 0.474004 | 7_4:-54234330 | Msa1163160:CDS |
| AATTACTGACCCTTCCTTCA+GGG | 0.478990 | 7_4:+54235296 | None:intergenic |
| GATTGGGGAGTCAGCGCTAA+AGG | 0.481323 | 7_4:-54234129 | Msa1163160:CDS |
| TACAAAGTAGTTAGAATGGT+GGG | 0.489125 | 7_4:-54235481 | Msa1163160:exon |
| CTGCGAATGTAGGACATGCT+TGG | 0.492119 | 7_4:-54234331 | Msa1163160:CDS |
| ATGCTAGATTTATGGGATCC+AGG | 0.495476 | 7_4:-54234277 | Msa1163160:CDS |
| GTCGGAGAAGACGCCGGTGG+TGG | 0.499258 | 7_4:+54237144 | None:intergenic |
| GTGGCATTAGGTTCTGCAGT+TGG | 0.500888 | 7_4:-54235418 | Msa1163160:CDS |
| TGTGCCAGCACGAACAGCCC+AGG | 0.502811 | 7_4:+54233998 | None:intergenic |
| GACATGGCAGCAGGCAGCTG+TGG | 0.504875 | 7_4:-54235437 | Msa1163160:CDS |
| CTGGAAAGCCTGCCTATGAA+AGG | 0.506335 | 7_4:-54235342 | Msa1163160:CDS |
| ACGAGCTCGCATGGCAACAT+AGG | 0.509391 | 7_4:+54234199 | None:intergenic |
| GCTATCAAATCAGCTCTTCG+TGG | 0.510481 | 7_4:+54235382 | None:intergenic |
| GCACGAACTAAATAGAGATT+CGG | 0.512279 | 7_4:+54237023 | None:intergenic |
| TGACTCCCCAATCAAGTTAG+TGG | 0.512495 | 7_4:+54234139 | None:intergenic |
| GCATTCAGTCAAGGAATAGC+AGG | 0.515448 | 7_4:+54233885 | None:intergenic |
| CAATTAACCGTTGCCACCAC+CGG | 0.517243 | 7_4:-54237157 | Msa1163160:five_prime_UTR |
| CACCAAATGTATTAGCTGGC+AGG | 0.519708 | 7_4:+54234306 | None:intergenic |
| TTATCAACACTACTTCCCCT+GGG | 0.521018 | 7_4:-54234015 | Msa1163160:CDS |
| TTTCTGGTTATTATAGCTGA+TGG | 0.521947 | 7_4:-54233834 | Msa1163160:three_prime_UTR |
| CACACGAACGGCGATTTCAA+CGG | 0.523667 | 7_4:+54237196 | None:intergenic |
| AAAGGGTATGCCAGAAGTCA+TGG | 0.524770 | 7_4:+54234171 | None:intergenic |
| GGGTAGCACGTGGTGGTGGA+CGG | 0.526948 | 7_4:+54237078 | None:intergenic |
| AAGAGGGTAGCACGTGGTGG+TGG | 0.529089 | 7_4:+54237074 | None:intergenic |
| ATGGACTTCACGAGCTCGCA+TGG | 0.530338 | 7_4:+54234190 | None:intergenic |
| CGCGAGCCACAGGGTGAAGA+GGG | 0.532025 | 7_4:+54237058 | None:intergenic |
| TGTTGGACAGAGGAGGGCGG+TGG | 0.532788 | 7_4:+54236998 | None:intergenic |
| GCTGATTTGATAGCAGCTCT+TGG | 0.534757 | 7_4:-54235373 | Msa1163160:CDS |
| GCAGCACCAAATGTATTAGC+TGG | 0.535690 | 7_4:+54234302 | None:intergenic |
| TGTTTGACAGGCAGTACTGT+TGG | 0.539375 | 7_4:-54234372 | Msa1163160:intron |
| CAAGCTGAAGACATGGCAGC+AGG | 0.541243 | 7_4:-54235446 | Msa1163160:CDS |
| TGGAAAGCCTGCCTATGAAA+GGG | 0.546871 | 7_4:-54235341 | Msa1163160:CDS |
| TGAAATCTTCCCCTGAAGGA+AGG | 0.548126 | 7_4:-54235306 | Msa1163160:CDS |
| GAAGACGCCGGTGGTGGCAA+CGG | 0.551902 | 7_4:+54237150 | None:intergenic |
| AAGAATCACTATAGGAAATG+TGG | 0.554546 | 7_4:+54233675 | None:intergenic |
| GACTCCCCAATCAAGTTAGT+GGG | 0.555707 | 7_4:+54234140 | None:intergenic |
| TTACAAAGTAGTTAGAATGG+TGG | 0.556716 | 7_4:-54235482 | Msa1163160:exon |
| CGTGTTGTATCTGCGAATGT+AGG | 0.557183 | 7_4:-54234341 | Msa1163160:CDS |
| GTGCCAGCACGAACAGCCCA+GGG | 0.560154 | 7_4:+54233999 | None:intergenic |
| CTTCATGGATACAGATGAGT+TGG | 0.565682 | 7_4:-54234222 | Msa1163160:CDS |
| TCTGTATCCATGAAGCGCAC+AGG | 0.571447 | 7_4:+54234230 | None:intergenic |
| GTGTATGATGTCTGTTATAG+GGG | 0.572805 | 7_4:-54234075 | Msa1163160:CDS |
| CCTTCCCACTAACTTGATTG+GGG | 0.576282 | 7_4:-54234144 | Msa1163160:CDS |
| CTGATGTGTTGGACAGAGGA+GGG | 0.585783 | 7_4:+54236992 | None:intergenic |
| CCTATGAAAGGGTTCTTCAA+AGG | 0.586688 | 7_4:-54235330 | Msa1163160:CDS |
| GAAATCTTCCCCTGAAGGAA+GGG | 0.588060 | 7_4:-54235305 | Msa1163160:intron |
| AGGATGAAATCTTCCCCTGA+AGG | 0.590859 | 7_4:-54235310 | Msa1163160:CDS |
| CCTGATGTGTTGGACAGAGG+AGG | 0.591832 | 7_4:+54236991 | None:intergenic |
| GTAGTTAGAATGGTGGGAGG+CGG | 0.595634 | 7_4:-54235475 | Msa1163160:exon |
| TAGCACGTGGTGGTGGACGG+TGG | 0.595787 | 7_4:+54237081 | None:intergenic |
| ATTGGAGATAGCTTCTGCAC+CGG | 0.598336 | 7_4:+54233773 | None:intergenic |
| ATTACTGACCCTTCCTTCAG+GGG | 0.600031 | 7_4:+54235297 | None:intergenic |
| GCTCAGAAAGCATTCAGTCA+AGG | 0.608100 | 7_4:+54233876 | None:intergenic |
| AGAAAGAAAACCTGATGTGT+TGG | 0.611085 | 7_4:+54236981 | None:intergenic |
| GATTTCACATTGAGGCAACA+AGG | 0.611852 | 7_4:+54237234 | None:intergenic |
| GGATCCCATAAATCTAGCAT+AGG | 0.615393 | 7_4:+54234280 | None:intergenic |
| TGAGGCAACAAGGTCTTCGT+CGG | 0.622289 | 7_4:+54237244 | None:intergenic |
| CCCCAATCAAGTTAGTGGGA+AGG | 0.623594 | 7_4:+54234144 | None:intergenic |
| TAGTTAGTCGGAGAAGACGC+CGG | 0.631370 | 7_4:+54237138 | None:intergenic |
| GTGAAGAGGGTAGCACGTGG+TGG | 0.634024 | 7_4:+54237071 | None:intergenic |
| GTACAATCAAGCTGAAGACA+TGG | 0.636594 | 7_4:-54235453 | Msa1163160:CDS |
| GAATGTGAGAAATAGTTAGT+CGG | 0.637647 | 7_4:+54237126 | None:intergenic |
| GAGTGAAAATTACACACGAA+CGG | 0.641072 | 7_4:+54237184 | None:intergenic |
| ATAACAGACATCATACACAT+AGG | 0.647122 | 7_4:+54234080 | None:intergenic |
| GTATCCATGAAGCGCACAGG+AGG | 0.648493 | 7_4:+54234233 | None:intergenic |
| AAACCTGATGTGTTGGACAG+AGG | 0.648591 | 7_4:+54236988 | None:intergenic |
| ACAGCGGCGATTTCACATTG+AGG | 0.654134 | 7_4:+54237226 | None:intergenic |
| ATGTGTTGGACAGAGGAGGG+CGG | 0.671562 | 7_4:+54236995 | None:intergenic |
| TTTCAACGGTTTAGGGACAG+CGG | 0.689719 | 7_4:+54237210 | None:intergenic |
| TGCCAGCACGAACAGCCCAG+GGG | 0.704762 | 7_4:+54234000 | None:intergenic |
| TTCTCGGATATAAAACGCAG+CGG | 0.707482 | 7_4:-54237106 | Msa1163160:five_prime_UTR |
| TGTATGATGTCTGTTATAGG+GGG | 0.710827 | 7_4:-54234074 | Msa1163160:CDS |
| AAAGTAGTTAGAATGGTGGG+AGG | 0.711676 | 7_4:-54235478 | Msa1163160:exon |
| ACATTCGCAGATACAACACG+AGG | 0.717763 | 7_4:+54234344 | None:intergenic |
| TTAGTCGGAGAAGACGCCGG+TGG | 0.721862 | 7_4:+54237141 | None:intergenic |
| CATTCGCAGATACAACACGA+GGG | 0.758450 | 7_4:+54234345 | None:intergenic |
| AGGGTGAAGAGGGTAGCACG+TGG | 0.764446 | 7_4:+54237068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+GGG | - | chr7_4:54234111-54234130 | Msa1163160:CDS | 0.0% |
| !! | TATGAATACAATTAAAAAAA+TGG | - | chr7_4:54235082-54235101 | Msa1163160:intron | 10.0% |
| !!! | TTTGTTTTTTTAATAATATC+CGG | - | chr7_4:54237074-54237093 | Msa1163160:five_prime_UTR | 10.0% |
| !! | AACTGAAATAATAATCATTT+GGG | + | chr7_4:54234215-54234234 | None:intergenic | 15.0% |
| !! | AAACTGAAATAATAATCATT+TGG | + | chr7_4:54234216-54234235 | None:intergenic | 15.0% |
| !! | GTTATATACTTGTTTAATAT+TGG | - | chr7_4:54234336-54234355 | Msa1163160:CDS | 15.0% |
| !!! | AAATTAGTAAGCATTTTATT+AGG | - | chr7_4:54234753-54234772 | Msa1163160:intron | 15.0% |
| !!! | TGAGTTTATATTTATTTTTC+TGG | - | chr7_4:54237016-54237035 | Msa1163160:five_prime_UTR | 15.0% |
| !!! | CCTTTTTTTGCTTTAAATTA+CGG | - | chr7_4:54233933-54233952 | Msa1163160:CDS | 20.0% |
| !!! | AAATTACGGTTTTTTGATTT+TGG | - | chr7_4:54233947-54233966 | Msa1163160:CDS | 20.0% |
| !! | TGTTTAATTGGTTATGAAAT+TGG | - | chr7_4:54233993-54234012 | Msa1163160:CDS | 20.0% |
| !! | GTTTAATTGGTTATGAAATT+GGG | - | chr7_4:54233994-54234013 | Msa1163160:CDS | 20.0% |
| !! | AGGTGATAAAAAAAACAAAA+AGG | - | chr7_4:54234302-54234321 | Msa1163160:CDS | 20.0% |
| !! | ATATACTTGTTTAATATTGG+AGG | - | chr7_4:54234339-54234358 | Msa1163160:CDS | 20.0% |
| !! | AAAACTAAATTTCAGTGTAT+TGG | + | chr7_4:54234453-54234472 | None:intergenic | 20.0% |
| !! | TTCAAAAGAACTAAGAATAT+GGG | + | chr7_4:54234538-54234557 | None:intergenic | 20.0% |
| !! | ATTCAAAAGAACTAAGAATA+TGG | + | chr7_4:54234539-54234558 | None:intergenic | 20.0% |
| !!! | TGATTTACTTTGAAATACAT+AGG | + | chr7_4:54235134-54235153 | None:intergenic | 20.0% |
| !! | TTATTATTATCACTCATTCA+CGG | + | chr7_4:54235344-54235363 | None:intergenic | 20.0% |
| !!! | ATTTTACAAAGTAGTTAGAA+TGG | - | chr7_4:54235381-54235400 | Msa1163160:CDS | 20.0% |
| !! | AACACGAAAATAACTAAAAA+GGG | + | chr7_4:54235606-54235625 | None:intergenic | 20.0% |
| !! | AATCATATTTCATCCAATAT+GGG | + | chr7_4:54235862-54235881 | None:intergenic | 20.0% |
| !! | AAATCATATTTCATCCAATA+TGG | + | chr7_4:54235863-54235882 | None:intergenic | 20.0% |
| !! | AACATGATATCATAAAACTT+TGG | + | chr7_4:54235956-54235975 | None:intergenic | 20.0% |
| !!! | AAAGTTTTATGATATCATGT+TGG | - | chr7_4:54235955-54235974 | Msa1163160:intron | 20.0% |
| !! | TTTGTTACTGAATTAACAAA+GGG | + | chr7_4:54236022-54236041 | None:intergenic | 20.0% |
| !!! | TTTTGTTACTGAATTAACAA+AGG | + | chr7_4:54236023-54236042 | None:intergenic | 20.0% |
| !! | CAAAAATAGTTTATATTTCG+AGG | - | chr7_4:54236038-54236057 | Msa1163160:intron | 20.0% |
| !! | ATTTCAAAATTCTAGACATA+AGG | - | chr7_4:54236335-54236354 | Msa1163160:intron | 20.0% |
| !! | CCGTAATTTAAAGCAAAAAA+AGG | + | chr7_4:54233936-54233955 | None:intergenic | 25.0% |
| ! | TGACTCTAATAGTGTTTAAT+TGG | - | chr7_4:54233981-54234000 | Msa1163160:CDS | 25.0% |
| !! | ATTCACAAAATCCCAAATTT+TGG | + | chr7_4:54234072-54234091 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGGGTCCAAAAT+TGG | - | chr7_4:54234122-54234141 | Msa1163160:CDS | 25.0% |
| !! | CAACAAATTAGTACCAATTT+TGG | + | chr7_4:54234138-54234157 | None:intergenic | 25.0% |
| ! | AAGTTATTAAAGCAAACACT+AGG | - | chr7_4:54234282-54234301 | Msa1163160:CDS | 25.0% |
| ! | TTAAGAATTTGTAGAGAACA+CGG | - | chr7_4:54234705-54234724 | Msa1163160:intron | 25.0% |
| ! | TAAAAAAGTAAGACTTTGAC+TGG | + | chr7_4:54235047-54235066 | None:intergenic | 25.0% |
| !! | GGATAATATTGGTATTTTGT+GGG | - | chr7_4:54235161-54235180 | Msa1163160:intron | 25.0% |
| ! | GTGAATGAGTGATAATAATA+AGG | - | chr7_4:54235343-54235362 | Msa1163160:CDS | 25.0% |
| ! | AAAATAACTAAAAAGGGAAG+AGG | + | chr7_4:54235600-54235619 | None:intergenic | 25.0% |
| ! | GAACACGAAAATAACTAAAA+AGG | + | chr7_4:54235607-54235626 | None:intergenic | 25.0% |
| ! | ACTCATATCTTATCTAATGT+GGG | + | chr7_4:54235681-54235700 | None:intergenic | 25.0% |
| ! | AACTCATATCTTATCTAATG+TGG | + | chr7_4:54235682-54235701 | None:intergenic | 25.0% |
| ! | TGATTTGAAAATGTGATAAG+TGG | - | chr7_4:54235877-54235896 | Msa1163160:intron | 25.0% |
| ! | TGATATCATAAAACTTTGGT+TGG | + | chr7_4:54235952-54235971 | None:intergenic | 25.0% |
| ! | CTTCATTTCTTCAGATTAAA+GGG | - | chr7_4:54236368-54236387 | Msa1163160:intron | 25.0% |
| ! | TTCATTTCTTCAGATTAAAG+GGG | - | chr7_4:54236369-54236388 | Msa1163160:intron | 25.0% |
| ! | AAAACTCACCAACTAAATAT+TGG | + | chr7_4:54237114-54237133 | None:intergenic | 25.0% |
| ! | ATCTGGTCATACAATTATAT+TGG | + | chr7_4:54237220-54237239 | None:intergenic | 25.0% |
| GAATGTGAGAAATAGTTAGT+CGG | + | chr7_4:54233743-54233762 | None:intergenic | 30.0% | |
| ! | CTAACTATTTCTCACATTCT+CGG | - | chr7_4:54233744-54233763 | Msa1163160:three_prime_UTR | 30.0% |
| ! | TTTTGATGCCTCCAAAATTT+GGG | - | chr7_4:54234058-54234077 | Msa1163160:CDS | 30.0% |
| GTGAATTGTGATTATGCAAT+TGG | - | chr7_4:54234086-54234105 | Msa1163160:CDS | 30.0% | |
| ATCAAGAGCAACAATAACAA+CGG | + | chr7_4:54234189-54234208 | None:intergenic | 30.0% | |
| TGCAAGAAACTGACATATTA+GGG | + | chr7_4:54234504-54234523 | None:intergenic | 30.0% | |
| TTGCAAGAAACTGACATATT+AGG | + | chr7_4:54234505-54234524 | None:intergenic | 30.0% | |
| CTAAGAATATGGGTAACATA+TGG | + | chr7_4:54234528-54234547 | None:intergenic | 30.0% | |
| CTTTCTTAGCAATTTGATTG+CGG | - | chr7_4:54234560-54234579 | Msa1163160:intron | 30.0% | |
| TTTCTTAGCAATTTGATTGC+GGG | - | chr7_4:54234561-54234580 | Msa1163160:intron | 30.0% | |
| ! | AAGACTTTGACTGGATTTTA+CGG | + | chr7_4:54235038-54235057 | None:intergenic | 30.0% |
| TTTCAAAGTAAATCACTGAG+AGG | - | chr7_4:54235139-54235158 | Msa1163160:intron | 30.0% | |
| TTCAAAGTAAATCACTGAGA+GGG | - | chr7_4:54235140-54235159 | Msa1163160:intron | 30.0% | |
| ! | GGGATAATATTGGTATTTTG+TGG | - | chr7_4:54235160-54235179 | Msa1163160:intron | 30.0% |
| TTACAAAGTAGTTAGAATGG+TGG | - | chr7_4:54235384-54235403 | Msa1163160:CDS | 30.0% | |
| TACAAAGTAGTTAGAATGGT+GGG | - | chr7_4:54235385-54235404 | Msa1163160:CDS | 30.0% | |
| CTTTACAAAACCAACTTCTA+AGG | + | chr7_4:54235717-54235736 | None:intergenic | 30.0% | |
| !!! | TGGTTTTGTAAAGTTGAGTT+AGG | - | chr7_4:54235724-54235743 | Msa1163160:intron | 30.0% |
| ! | TGAGTTAGGCTTGATATTTT+AGG | - | chr7_4:54235738-54235757 | Msa1163160:intron | 30.0% |
| !! | TTAGGCTTGATATTTTAGGA+TGG | - | chr7_4:54235742-54235761 | Msa1163160:intron | 30.0% |
| TTTGAAAATGTGATAAGTGG+AGG | - | chr7_4:54235880-54235899 | Msa1163160:intron | 30.0% | |
| !!! | TGTTACTTTTCAACATGAGT+TGG | + | chr7_4:54236136-54236155 | None:intergenic | 30.0% |
| GCTTCATTTCTTCAGATTAA+AGG | - | chr7_4:54236367-54236386 | Msa1163160:intron | 30.0% | |
| ATAACAGACATCATACACAT+AGG | + | chr7_4:54236789-54236808 | None:intergenic | 30.0% | |
| ATGTGTATGATGTCTGTTAT+AGG | - | chr7_4:54236789-54236808 | Msa1163160:intron | 30.0% | |
| TGTGTATGATGTCTGTTATA+GGG | - | chr7_4:54236790-54236809 | Msa1163160:intron | 30.0% | |
| !! | TTTCTGGTTATTATAGCTGA+TGG | - | chr7_4:54237032-54237051 | Msa1163160:five_prime_UTR | 30.0% |
| AGCTATCTCCAATATTTAGT+TGG | - | chr7_4:54237103-54237122 | Msa1163160:five_prime_UTR | 30.0% | |
| !!! | TTAGTTGGTGAGTTTTGTAT+AGG | - | chr7_4:54237118-54237137 | Msa1163160:five_prime_UTR | 30.0% |
| AAGAATCACTATAGGAAATG+TGG | + | chr7_4:54237194-54237213 | None:intergenic | 30.0% | |
| ATTGGTTGAAGAATCACTAT+AGG | + | chr7_4:54237202-54237221 | None:intergenic | 30.0% | |
| !! | AAAGCATAATCGCTTTTATC+TGG | - | chr7_4:54237244-54237263 | Msa1163160:five_prime_UTR | 30.0% |
| GAGTGAAAATTACACACGAA+CGG | + | chr7_4:54233685-54233704 | None:intergenic | 35.0% | |
| GCACGAACTAAATAGAGATT+CGG | + | chr7_4:54233846-54233865 | None:intergenic | 35.0% | |
| AGAAAGAAAACCTGATGTGT+TGG | + | chr7_4:54233888-54233907 | None:intergenic | 35.0% | |
| !! | GTTTTGATGCCTCCAAAATT+TGG | - | chr7_4:54234057-54234076 | Msa1163160:CDS | 35.0% |
| ! | CACAAAATCCCAAATTTTGG+AGG | + | chr7_4:54234069-54234088 | None:intergenic | 35.0% |
| AACACAATTGAGCTACTTCA+AGG | - | chr7_4:54234251-54234270 | Msa1163160:CDS | 35.0% | |
| ATTGGAGGCAACAATTACTT+TGG | - | chr7_4:54234354-54234373 | Msa1163160:CDS | 35.0% | |
| AACCAAAAACCTAATGTCAC+TGG | - | chr7_4:54234384-54234403 | Msa1163160:intron | 35.0% | |
| ! | AACCAGTGACATTAGGTTTT+TGG | + | chr7_4:54234389-54234408 | None:intergenic | 35.0% |
| TCAGTATAACCAGTGACATT+AGG | + | chr7_4:54234396-54234415 | None:intergenic | 35.0% | |
| CTGAAGACAATTTGTCAAGA+TGG | - | chr7_4:54234412-54234431 | Msa1163160:intron | 35.0% | |
| TTGCGGGAAGTTTATATTCT+AGG | - | chr7_4:54234577-54234596 | Msa1163160:intron | 35.0% | |
| AAATTGCATTATGCAGTTGC+AGG | - | chr7_4:54234608-54234627 | Msa1163160:intron | 35.0% | |
| AATTGCATTATGCAGTTGCA+GGG | - | chr7_4:54234609-54234628 | Msa1163160:intron | 35.0% | |
| !!! | TATTCATCGCTCTAGCTTTT+GGG | + | chr7_4:54234649-54234668 | None:intergenic | 35.0% |
| TAGAGCGATGAATACTCAAA+TGG | - | chr7_4:54234655-54234674 | Msa1163160:intron | 35.0% | |
| AGAGCGATGAATACTCAAAT+GGG | - | chr7_4:54234656-54234675 | Msa1163160:intron | 35.0% | |
| TTCATTAACAGCTTCAACAG+TGG | + | chr7_4:54234858-54234877 | None:intergenic | 35.0% | |
| CACAGCGGAAAAAAAATCAA+CGG | - | chr7_4:54234897-54234916 | Msa1163160:intron | 35.0% | |
| GCTAAGATTAAAGCGACTAA+CGG | - | chr7_4:54234919-54234938 | Msa1163160:intron | 35.0% | |
| CTAAGATTAAAGCGACTAAC+GGG | - | chr7_4:54234920-54234939 | Msa1163160:intron | 35.0% | |
| ! | AGACTTTGACTGGATTTTAC+GGG | + | chr7_4:54235037-54235056 | None:intergenic | 35.0% |
| ATCACTGAGAGGGATAATAT+TGG | - | chr7_4:54235150-54235169 | Msa1163160:intron | 35.0% | |
| AAAACAGACAAGACAAGAAC+CGG | + | chr7_4:54235276-54235295 | None:intergenic | 35.0% | |
| AATTCAATCACAGGGTTTGA+GGG | + | chr7_4:54235321-54235340 | None:intergenic | 35.0% | |
| ATTCACGGAATTCAATCACA+GGG | + | chr7_4:54235329-54235348 | None:intergenic | 35.0% | |
| TTAGTGCTAACCTTAGAAGT+TGG | - | chr7_4:54235704-54235723 | Msa1163160:intron | 35.0% | |
| TGAGTCTGTTCAAAATCTGT+TGG | - | chr7_4:54235767-54235786 | Msa1163160:intron | 35.0% | |
| GCCACTAGTACTTACTATTT+AGG | - | chr7_4:54235814-54235833 | Msa1163160:intron | 35.0% | |
| GCCTAAATAGTAAGTACTAG+TGG | + | chr7_4:54235818-54235837 | None:intergenic | 35.0% | |
| CATGTTGGAAACTATCTTCT+TGG | - | chr7_4:54235970-54235989 | Msa1163160:intron | 35.0% | |
| ATAACAACCCACTATTGTTG+TGG | - | chr7_4:54236084-54236103 | Msa1163160:intron | 35.0% | |
| TGAATGTGAAAATACGACTC+AGG | - | chr7_4:54236170-54236189 | Msa1163160:intron | 35.0% | |
| CAAAAATTTGTCACCGATGT+AGG | + | chr7_4:54236204-54236223 | None:intergenic | 35.0% | |
| TGAATGTGAAAATACGACTC+AGG | - | chr7_4:54236170-54236189 | Msa1163160:intron | 35.0% | |
| CAAAAATTTGTCACCGATGT+GGG | + | chr7_4:54236204-54236223 | None:intergenic | 35.0% | |
| TCAAAAATTTGTCACCGATG+TGG | + | chr7_4:54236265-54236284 | None:intergenic | 35.0% | |
| GATAGAGCTGTGATTTCTTT+CGG | - | chr7_4:54236283-54236302 | Msa1163160:intron | 35.0% | |
| GTGTATGATGTCTGTTATAG+GGG | - | chr7_4:54236791-54236810 | Msa1163160:intron | 35.0% | |
| TGTATGATGTCTGTTATAGG+GGG | - | chr7_4:54236792-54236811 | Msa1163160:intron | 35.0% | |
| ! | GCAGCATTTTCATGAAGATT+TGG | - | chr7_4:54236923-54236942 | Msa1163160:intron | 35.0% |
| GAAGATGTTCGCAGAAAATT+GGG | - | chr7_4:54236945-54236964 | Msa1163160:intron | 35.0% | |
| !! | TTGGTGAGTTTTGTATAGGT+TGG | - | chr7_4:54237122-54237141 | Msa1163160:five_prime_UTR | 35.0% |
| GCGATTATGCTTTCAATATC+TGG | + | chr7_4:54237237-54237256 | None:intergenic | 35.0% | |
| GATTTCACATTGAGGCAACA+AGG | + | chr7_4:54233635-54233654 | None:intergenic | 40.0% | |
| TTCTCGGATATAAAACGCAG+CGG | - | chr7_4:54233760-54233779 | Msa1163160:three_prime_UTR | 40.0% | |
| TGTGTTGTGACACCATTGTT+AGG | - | chr7_4:54234034-54234053 | Msa1163160:CDS | 40.0% | |
| GTGTTGTGACACCATTGTTA+GGG | - | chr7_4:54234035-54234054 | Msa1163160:CDS | 40.0% | |
| AGGCATCAAAACCCTAACAA+TGG | + | chr7_4:54234049-54234068 | None:intergenic | 40.0% | |
| CGGGAAGTTTATATTCTAGG+AGG | - | chr7_4:54234580-54234599 | Msa1163160:intron | 40.0% | |
| !!! | GTATTCATCGCTCTAGCTTT+TGG | + | chr7_4:54234650-54234669 | None:intergenic | 40.0% |
| ATGAATACTCAAATGGGTGG+AGG | - | chr7_4:54234662-54234681 | Msa1163160:intron | 40.0% | |
| TTGTAATGCATGACACACAG+CGG | - | chr7_4:54234882-54234901 | Msa1163160:intron | 40.0% | |
| !!! | TTGTATTTTTTCCCCGAGTC+AGG | - | chr7_4:54234963-54234982 | Msa1163160:intron | 40.0% |
| !!! | TGTATTTTTTCCCCGAGTCA+GGG | - | chr7_4:54234964-54234983 | Msa1163160:intron | 40.0% |
| ! | GACTTTGACTGGATTTTACG+GGG | + | chr7_4:54235036-54235055 | None:intergenic | 40.0% |
| ATTCAATCACAGGGTTTGAG+GGG | + | chr7_4:54235320-54235339 | None:intergenic | 40.0% | |
| GAATTCAATCACAGGGTTTG+AGG | + | chr7_4:54235322-54235341 | None:intergenic | 40.0% | |
| CATTCACGGAATTCAATCAC+AGG | + | chr7_4:54235330-54235349 | None:intergenic | 40.0% | |
| ! | AAAGTAGTTAGAATGGTGGG+AGG | - | chr7_4:54235388-54235407 | Msa1163160:CDS | 40.0% |
| GTACAATCAAGCTGAAGACA+TGG | - | chr7_4:54235413-54235432 | Msa1163160:CDS | 40.0% | |
| ! | CCTTTGAAGAACCCTTTCAT+AGG | + | chr7_4:54235539-54235558 | None:intergenic | 40.0% |
| CCTATGAAAGGGTTCTTCAA+AGG | - | chr7_4:54235536-54235555 | Msa1163160:intron | 40.0% | |
| AATTACTGACCCTTCCTTCA+GGG | + | chr7_4:54235573-54235592 | None:intergenic | 40.0% | |
| GACTCATAACATGATGAGCA+AGG | + | chr7_4:54235659-54235678 | None:intergenic | 40.0% | |
| CTACCACAAACTACTGCTAT+CGG | - | chr7_4:54235791-54235810 | Msa1163160:intron | 40.0% | |
| TACCACAAACTACTGCTATC+GGG | - | chr7_4:54235792-54235811 | Msa1163160:intron | 40.0% | |
| ATGTGAAAATACGACTCAGG+AGG | - | chr7_4:54236173-54236192 | Msa1163160:intron | 40.0% | |
| ATGTGAAAATACGACTCAGG+AGG | - | chr7_4:54236173-54236192 | Msa1163160:intron | 40.0% | |
| GGTTGTGAAAGCAAATGCAT+TGG | + | chr7_4:54236473-54236492 | None:intergenic | 40.0% | |
| ! | CTTTCACAACCTTGTTTGAC+AGG | - | chr7_4:54236482-54236501 | Msa1163160:intron | 40.0% |
| TGCTGCCTATGCTAGATTTA+TGG | - | chr7_4:54236581-54236600 | Msa1163160:intron | 40.0% | |
| GCTGCCTATGCTAGATTTAT+GGG | - | chr7_4:54236582-54236601 | Msa1163160:intron | 40.0% | |
| GGATCCCATAAATCTAGCAT+AGG | + | chr7_4:54236589-54236608 | None:intergenic | 40.0% | |
| ATGCTAGATTTATGGGATCC+AGG | - | chr7_4:54236589-54236608 | Msa1163160:intron | 40.0% | |
| ATCATCTGGTGAAAAGTTCC+TGG | + | chr7_4:54236610-54236629 | None:intergenic | 40.0% | |
| CTTCATGGATACAGATGAGT+TGG | - | chr7_4:54236644-54236663 | Msa1163160:intron | 40.0% | |
| GTTAGTGGGAAGGTCAAAAA+GGG | + | chr7_4:54236715-54236734 | None:intergenic | 40.0% | |
| AGTTAGTGGGAAGGTCAAAA+AGG | + | chr7_4:54236716-54236735 | None:intergenic | 40.0% | |
| ACCTTCCCACTAACTTGATT+GGG | - | chr7_4:54236721-54236740 | Msa1163160:intron | 40.0% | |
| TTTATCAACACTACTTCCCC+TGG | - | chr7_4:54236850-54236869 | Msa1163160:intron | 40.0% | |
| TTATCAACACTACTTCCCCT+GGG | - | chr7_4:54236851-54236870 | Msa1163160:intron | 40.0% | |
| GGAAGATGTTCGCAGAAAAT+TGG | - | chr7_4:54236944-54236963 | Msa1163160:intron | 40.0% | |
| TTTCAACGGTTTAGGGACAG+CGG | + | chr7_4:54233659-54233678 | None:intergenic | 45.0% | |
| ACGGCGATTTCAACGGTTTA+GGG | + | chr7_4:54233666-54233685 | None:intergenic | 45.0% | |
| AACGGCGATTTCAACGGTTT+AGG | + | chr7_4:54233667-54233686 | None:intergenic | 45.0% | |
| AAAAACAATCGCGAGCCACA+GGG | + | chr7_4:54233820-54233839 | None:intergenic | 45.0% | |
| AAACCTGATGTGTTGGACAG+AGG | + | chr7_4:54233881-54233900 | None:intergenic | 45.0% | |
| !!! | GCTTTTGGGACACAACACAA+AGG | + | chr7_4:54234635-54234654 | None:intergenic | 45.0% |
| GCGATGAATACTCAAATGGG+TGG | - | chr7_4:54234659-54234678 | Msa1163160:intron | 45.0% | |
| AAGTTTGAACCTCCTGATCG+AGG | - | chr7_4:54234820-54234839 | Msa1163160:intron | 45.0% | |
| AGTTTGAACCTCCTGATCGA+GGG | - | chr7_4:54234821-54234840 | Msa1163160:intron | 45.0% | |
| ! | TTAAAGCGACTAACGGGTGT+TGG | - | chr7_4:54234926-54234945 | Msa1163160:intron | 45.0% |
| !! | ACTAACGGGTGTTGGAGTTA+GGG | - | chr7_4:54234934-54234953 | Msa1163160:intron | 45.0% |
| TGTCAAAACAGTCCCTGACT+CGG | + | chr7_4:54234979-54234998 | None:intergenic | 45.0% | |
| GGTTGAAGAGAAGGAGAAAC+AGG | + | chr7_4:54235191-54235210 | None:intergenic | 45.0% | |
| !! | TTCTGCAGTTGGAGCACTTT+TGG | - | chr7_4:54235459-54235478 | Msa1163160:CDS | 45.0% |
| GCTATCAAATCAGCTCTTCG+TGG | + | chr7_4:54235487-54235506 | None:intergenic | 45.0% | |
| !! | GCTGATTTGATAGCAGCTCT+TGG | - | chr7_4:54235493-54235512 | Msa1163160:intron | 45.0% |
| TGGAAAGCCTGCCTATGAAA+GGG | - | chr7_4:54235525-54235544 | Msa1163160:intron | 45.0% | |
| TGAAGAACCCTTTCATAGGC+AGG | + | chr7_4:54235535-54235554 | None:intergenic | 45.0% | |
| AGGATGAAATCTTCCCCTGA+AGG | - | chr7_4:54235556-54235575 | Msa1163160:intron | 45.0% | |
| TGAAATCTTCCCCTGAAGGA+AGG | - | chr7_4:54235560-54235579 | Msa1163160:intron | 45.0% | |
| GAAATCTTCCCCTGAAGGAA+GGG | - | chr7_4:54235561-54235580 | Msa1163160:intron | 45.0% | |
| ATTACTGACCCTTCCTTCAG+GGG | + | chr7_4:54235572-54235591 | None:intergenic | 45.0% | |
| CAATTACTGACCCTTCCTTC+AGG | + | chr7_4:54235574-54235593 | None:intergenic | 45.0% | |
| GTGTGCTAAGAGTCCCATAT+TGG | - | chr7_4:54235846-54235865 | Msa1163160:intron | 45.0% | |
| ! | ACCTTACAAACCGATTTCGC+AGG | - | chr7_4:54235911-54235930 | Msa1163160:intron | 45.0% |
| ! | CCTTACAAACCGATTTCGCA+GGG | - | chr7_4:54235912-54235931 | Msa1163160:intron | 45.0% |
| CTAACTCAACCCTGCGAAAT+CGG | + | chr7_4:54235924-54235943 | None:intergenic | 45.0% | |
| CGCTTCACCACAACAATAGT+GGG | + | chr7_4:54236094-54236113 | None:intergenic | 45.0% | |
| TCGCTTCACCACAACAATAG+TGG | + | chr7_4:54236095-54236114 | None:intergenic | 45.0% | |
| !! | GTGAAGCGAAGAGTGTTACA+TGG | - | chr7_4:54236106-54236125 | Msa1163160:intron | 45.0% |
| TCAGGAGGCAATACCTACAT+CGG | - | chr7_4:54236188-54236207 | Msa1163160:intron | 45.0% | |
| ACAGTACTGCCTGTCAAACA+AGG | + | chr7_4:54236494-54236513 | None:intergenic | 45.0% | |
| TGTTTGACAGGCAGTACTGT+TGG | - | chr7_4:54236494-54236513 | Msa1163160:intron | 45.0% | |
| CATTCGCAGATACAACACGA+GGG | + | chr7_4:54236524-54236543 | None:intergenic | 45.0% | |
| ACATTCGCAGATACAACACG+AGG | + | chr7_4:54236525-54236544 | None:intergenic | 45.0% | |
| CGTGTTGTATCTGCGAATGT+AGG | - | chr7_4:54236525-54236544 | Msa1163160:intron | 45.0% | |
| TGCGAATGTAGGACATGCTT+GGG | - | chr7_4:54236536-54236555 | Msa1163160:intron | 45.0% | |
| GACCTGCCAGCTAATACATT+TGG | - | chr7_4:54236558-54236577 | Msa1163160:intron | 45.0% | |
| CACCAAATGTATTAGCTGGC+AGG | + | chr7_4:54236563-54236582 | None:intergenic | 45.0% | |
| GCAGCACCAAATGTATTAGC+TGG | + | chr7_4:54236567-54236586 | None:intergenic | 45.0% | |
| ! | AAAGGGTATGCCAGAAGTCA+TGG | + | chr7_4:54236698-54236717 | None:intergenic | 45.0% |
| GACCTTCCCACTAACTTGAT+TGG | - | chr7_4:54236720-54236739 | Msa1163160:intron | 45.0% | |
| CCTTCCCACTAACTTGATTG+GGG | - | chr7_4:54236722-54236741 | Msa1163160:intron | 45.0% | |
| GACTCCCCAATCAAGTTAGT+GGG | + | chr7_4:54236729-54236748 | None:intergenic | 45.0% | |
| TGACTCCCCAATCAAGTTAG+TGG | + | chr7_4:54236730-54236749 | None:intergenic | 45.0% | |
| AGTCAAGGAATAGCAGGAAC+AGG | + | chr7_4:54236978-54236997 | None:intergenic | 45.0% | |
| GCATTCAGTCAAGGAATAGC+AGG | + | chr7_4:54236984-54237003 | None:intergenic | 45.0% | |
| !! | GCTCAGAAAGCATTCAGTCA+AGG | + | chr7_4:54236993-54237012 | None:intergenic | 45.0% |
| ATTGGAGATAGCTTCTGCAC+CGG | + | chr7_4:54237096-54237115 | None:intergenic | 45.0% | |
| !!! | GTTTTTTTTTTTTTTTTTTT+TGG | - | chr7_4:54234110-54234129 | Msa1163160:CDS | 5.0% |
| TGAGGCAACAAGGTCTTCGT+CGG | + | chr7_4:54233625-54233644 | None:intergenic | 50.0% | |
| ACAGCGGCGATTTCACATTG+AGG | + | chr7_4:54233643-54233662 | None:intergenic | 50.0% | |
| CACACGAACGGCGATTTCAA+CGG | + | chr7_4:54233673-54233692 | None:intergenic | 50.0% | |
| CAATTAACCGTTGCCACCAC+CGG | - | chr7_4:54233709-54233728 | Msa1163160:three_prime_UTR | 50.0% | |
| TAGTTAGTCGGAGAAGACGC+CGG | + | chr7_4:54233731-54233750 | None:intergenic | 50.0% | |
| CAAAAACAATCGCGAGCCAC+AGG | + | chr7_4:54233821-54233840 | None:intergenic | 50.0% | |
| CTGATGTGTTGGACAGAGGA+GGG | + | chr7_4:54233877-54233896 | None:intergenic | 50.0% | |
| !! | GACTAACGGGTGTTGGAGTT+AGG | - | chr7_4:54234933-54234952 | Msa1163160:intron | 50.0% |
| ! | TCAAAACAGTCCCTGACTCG+GGG | + | chr7_4:54234977-54234996 | None:intergenic | 50.0% |
| GTCAAAACAGTCCCTGACTC+GGG | + | chr7_4:54234978-54234997 | None:intergenic | 50.0% | |
| !!! | CAGGGACTGTTTTGACAACG+AGG | - | chr7_4:54234982-54235001 | Msa1163160:intron | 50.0% |
| TTGACAACGAGGTGCACATC+AGG | - | chr7_4:54234993-54235012 | Msa1163160:intron | 50.0% | |
| TGACAACGAGGTGCACATCA+GGG | - | chr7_4:54234994-54235013 | Msa1163160:intron | 50.0% | |
| CTGTGCGAAGGTTGAAGAGA+AGG | + | chr7_4:54235200-54235219 | None:intergenic | 50.0% | |
| GGGTTTGAGGGGAAAATGAG+AGG | + | chr7_4:54235309-54235328 | None:intergenic | 50.0% | |
| ! | GTAGTTAGAATGGTGGGAGG+CGG | - | chr7_4:54235391-54235410 | Msa1163160:CDS | 50.0% |
| GTGGCATTAGGTTCTGCAGT+TGG | - | chr7_4:54235448-54235467 | Msa1163160:CDS | 50.0% | |
| GCAGCTCTTGGTGAAACAAC+TGG | - | chr7_4:54235505-54235524 | Msa1163160:intron | 50.0% | |
| CTGGAAAGCCTGCCTATGAA+AGG | - | chr7_4:54235524-54235543 | Msa1163160:intron | 50.0% | |
| !! | CCCTGCGAAATCGGTTTGTA+AGG | + | chr7_4:54235915-54235934 | None:intergenic | 50.0% |
| TCAGGAGGCAATACCCACAT+CGG | - | chr7_4:54236248-54236267 | Msa1163160:intron | 50.0% | |
| CTGCGAATGTAGGACATGCT+TGG | - | chr7_4:54236535-54236554 | Msa1163160:intron | 50.0% | |
| TCTGTATCCATGAAGCGCAC+AGG | + | chr7_4:54236639-54236658 | None:intergenic | 50.0% | |
| CTCGTGAAGTCCATGACTTC+TGG | - | chr7_4:54236685-54236704 | Msa1163160:intron | 50.0% | |
| CCCCAATCAAGTTAGTGGGA+AGG | + | chr7_4:54236725-54236744 | None:intergenic | 50.0% | |
| ATGTGTTGGACAGAGGAGGG+CGG | + | chr7_4:54233874-54233893 | None:intergenic | 55.0% | |
| CCTGATGTGTTGGACAGAGG+AGG | + | chr7_4:54233878-54233897 | None:intergenic | 55.0% | |
| CCTCCTCTGTCCAACACATC+AGG | - | chr7_4:54233875-54233894 | Msa1163160:exon | 55.0% | |
| TGACTAGACCCTCGATCAGG+AGG | + | chr7_4:54234832-54234851 | None:intergenic | 55.0% | |
| ! | CGTTGACTAGACCCTCGATC+AGG | + | chr7_4:54234835-54234854 | None:intergenic | 55.0% |
| AGCGGTGTGGGATTGATCGA+CGG | + | chr7_4:54235233-54235252 | None:intergenic | 55.0% | |
| TTGAAACGCCGCACACGATC+CGG | - | chr7_4:54235254-54235273 | Msa1163160:intron | 55.0% | |
| GACAAGAACCGGATCGTGTG+CGG | + | chr7_4:54235265-54235284 | None:intergenic | 55.0% | |
| CAAGCTGAAGACATGGCAGC+AGG | - | chr7_4:54235420-54235439 | Msa1163160:CDS | 55.0% | |
| GGCCCGATAGCAGTAGTTTG+TGG | + | chr7_4:54235797-54235816 | None:intergenic | 55.0% | |
| GTATCCATGAAGCGCACAGG+AGG | + | chr7_4:54236636-54236655 | None:intergenic | 55.0% | |
| ACGAGCTCGCATGGCAACAT+AGG | + | chr7_4:54236670-54236689 | None:intergenic | 55.0% | |
| ATGGACTTCACGAGCTCGCA+TGG | + | chr7_4:54236679-54236698 | None:intergenic | 55.0% | |
| GATTGGGGAGTCAGCGCTAA+AGG | - | chr7_4:54236737-54236756 | Msa1163160:intron | 55.0% | |
| TTAGTCGGAGAAGACGCCGG+TGG | + | chr7_4:54233728-54233747 | None:intergenic | 60.0% | |
| AAGAGGGTAGCACGTGGTGG+TGG | + | chr7_4:54233795-54233814 | None:intergenic | 60.0% | |
| GTGAAGAGGGTAGCACGTGG+TGG | + | chr7_4:54233798-54233817 | None:intergenic | 60.0% | |
| AGGGTGAAGAGGGTAGCACG+TGG | + | chr7_4:54233801-54233820 | None:intergenic | 60.0% | |
| GTGCTACCCTCTTCACCCTG+TGG | - | chr7_4:54233802-54233821 | Msa1163160:three_prime_UTR | 60.0% | |
| GGTGTGGGATTGATCGACGG+TGG | + | chr7_4:54235230-54235249 | None:intergenic | 60.0% | |
| CGGCGTTTCAACAGCGGTGT+GGG | + | chr7_4:54235245-54235264 | None:intergenic | 60.0% | |
| CGTGTGCGGCGTTTCAACAG+CGG | + | chr7_4:54235251-54235270 | None:intergenic | 60.0% | |
| CAGCAGGCAGCTGTGGCATT+AGG | - | chr7_4:54235436-54235455 | Msa1163160:CDS | 60.0% | |
| CGCACAGGAGGTCGATCATC+TGG | + | chr7_4:54236624-54236643 | None:intergenic | 60.0% | |
| TCGACCTCCTGTGCGCTTCA+TGG | - | chr7_4:54236629-54236648 | Msa1163160:intron | 60.0% | |
| ! | GAAGACGCCGGTGGTGGCAA+CGG | + | chr7_4:54233719-54233738 | None:intergenic | 65.0% |
| !! | TAGCACGTGGTGGTGGACGG+TGG | + | chr7_4:54233788-54233807 | None:intergenic | 65.0% |
| !! | GGGTAGCACGTGGTGGTGGA+CGG | + | chr7_4:54233791-54233810 | None:intergenic | 65.0% |
| CGCGAGCCACAGGGTGAAGA+GGG | + | chr7_4:54233811-54233830 | None:intergenic | 65.0% | |
| TCGCGAGCCACAGGGTGAAG+AGG | + | chr7_4:54233812-54233831 | None:intergenic | 65.0% | |
| TGTTGGACAGAGGAGGGCGG+TGG | + | chr7_4:54233871-54233890 | None:intergenic | 65.0% | |
| GGTGGCGTGATGCTGTGCGA+AGG | + | chr7_4:54235212-54235231 | None:intergenic | 65.0% | |
| GCGGCGTTTCAACAGCGGTG+TGG | + | chr7_4:54235246-54235265 | None:intergenic | 65.0% | |
| GACATGGCAGCAGGCAGCTG+TGG | - | chr7_4:54235429-54235448 | Msa1163160:CDS | 65.0% | |
| TTCCCCTGGGCTGTTCGTGC+TGG | - | chr7_4:54236864-54236883 | Msa1163160:intron | 65.0% | |
| TGCCAGCACGAACAGCCCAG+GGG | + | chr7_4:54236869-54236888 | None:intergenic | 65.0% | |
| GTGCCAGCACGAACAGCCCA+GGG | + | chr7_4:54236870-54236889 | None:intergenic | 65.0% | |
| TGTGCCAGCACGAACAGCCC+AGG | + | chr7_4:54236871-54236890 | None:intergenic | 65.0% | |
| GTCGGAGAAGACGCCGGTGG+TGG | + | chr7_4:54233725-54233744 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54233610 | 54237278 | 54233610 | ID=Msa1163160;Name=Msa1163160 |
| chr7_4 | mRNA | 54233610 | 54237278 | 54233610 | ID=Msa1163160-mRNA-1;Parent=Msa1163160;Name=Msa1163160-mRNA-1;_AED=0.25;_eAED=0.25;_QI=306|1|1|1|0.5|0.33|3|283|224 |
| chr7_4 | exon | 54233610 | 54234384 | 54233610 | ID=Msa1163160-mRNA-1:exon:15788;Parent=Msa1163160-mRNA-1 |
| chr7_4 | exon | 54235306 | 54235507 | 54235306 | ID=Msa1163160-mRNA-1:exon:15787;Parent=Msa1163160-mRNA-1 |
| chr7_4 | exon | 54236992 | 54237278 | 54236992 | ID=Msa1163160-mRNA-1:exon:15786;Parent=Msa1163160-mRNA-1 |
| chr7_4 | five_prime_UTR | 54236992 | 54237278 | 54236992 | ID=Msa1163160-mRNA-1:five_prime_utr;Parent=Msa1163160-mRNA-1 |
| chr7_4 | five_prime_UTR | 54235489 | 54235507 | 54235489 | ID=Msa1163160-mRNA-1:five_prime_utr;Parent=Msa1163160-mRNA-1 |
| chr7_4 | CDS | 54235306 | 54235488 | 54235306 | ID=Msa1163160-mRNA-1:cds;Parent=Msa1163160-mRNA-1 |
| chr7_4 | CDS | 54233893 | 54234384 | 54233893 | ID=Msa1163160-mRNA-1:cds;Parent=Msa1163160-mRNA-1 |
| chr7_4 | three_prime_UTR | 54233610 | 54233892 | 54233610 | ID=Msa1163160-mRNA-1:three_prime_utr;Parent=Msa1163160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
