AlfalfaGEDB | Msa1157930

M. sativa cultivar zhongmu-4 / Msa1157930

KEGG: K00411
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006950 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016679 GO:0016681 GO:0019866 GO:0022900 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046872 GO:0050896 GO:0055114 GO:0070069 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204
PFAM: PF02921.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157930	XP_003624512.1	98.901	273	3	0	1	273	1	273	0.0	555

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157930	sp\|P49727\|UCRI_MAIZE	75.000	276	63	4	1	273	1	273	7.00e-147	415

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157930	G7KXA6	98.901	273	3	0	1	273	1	273	0.0	555

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa1157930	-0.807140	5.846525e-50	-8.615850e-47
Msa0031340	Msa1157930	-0.821948	3.077346e-53	-8.615850e-47
Msa0036220	Msa1157930	0.802079	6.651129e-49	-8.615850e-47
Msa0054730	Msa1157930	0.812007	5.264167e-51	-8.615850e-47
Msa0612870	Msa1157930	0.818006	2.454723e-52	-8.615850e-47
Msa0626090	Msa1157930	-0.812797	3.538574e-51	-8.615850e-47
Msa0640510	Msa1157930	0.849609	2.897044e-60	-8.615850e-47
Msa0661190	Msa1157930	0.815393	9.462147e-52	-8.615850e-47
Msa0672690	Msa1157930	-0.831192	1.918275e-55	-8.615850e-47
Msa0693010	Msa1157930	0.801818	7.524268e-49	-8.615850e-47
Msa0695430	Msa1157930	-0.805535	1.273903e-49	-8.615850e-47
Msa0709400	Msa1157930	-0.831213	1.896524e-55	-8.615850e-47
Msa0739590	Msa1157930	0.860354	2.190132e-63	-8.615850e-47
Msa0796700	Msa1157930	-0.805842	1.098118e-49	-8.615850e-47
Msa0801760	Msa1157930	-0.813022	3.158064e-51	-8.615850e-47
Msa0829480	Msa1157930	0.822099	2.839281e-53	-8.615850e-47
Msa0137100	Msa1157930	-0.808451	3.077287e-50	-8.615850e-47
Msa0157290	Msa1157930	-0.807050	6.108470e-50	-8.615850e-47
Msa0161950	Msa1157930	0.803719	3.048677e-49	-8.615850e-47
Msa0170220	Msa1157930	-0.805114	1.560535e-49	-8.615850e-47
Msa0220580	Msa1157930	-0.804355	2.248255e-49	-8.615850e-47
Msa0436490	Msa1157930	0.806500	7.983573e-50	-8.615850e-47
Msa0455040	Msa1157930	-0.804272	2.339446e-49	-8.615850e-47
Msa0993290	Msa1157930	-0.813543	2.426884e-51	-8.615850e-47
Msa0993600	Msa1157930	-0.806017	1.008661e-49	-8.615850e-47
Msa1030880	Msa1157930	0.820152	7.976378e-53	-8.615850e-47
Msa1035310	Msa1157930	-0.823540	1.311116e-53	-8.615850e-47
Msa1048280	Msa1157930	0.805104	1.568130e-49	-8.615850e-47
Msa1075220	Msa1157930	0.824675	7.099186e-54	-8.615850e-47
Msa1078580	Msa1157930	0.809262	2.064484e-50	-8.615850e-47
Msa1078750	Msa1157930	0.822345	2.489880e-53	-8.615850e-47
Msa1102140	Msa1157930	-0.805903	1.065935e-49	-8.615850e-47
Msa0243100	Msa1157930	-0.804798	1.817462e-49	-8.615850e-47
Msa0357340	Msa1157930	-0.809766	1.608713e-50	-8.615850e-47
Msa1116130	Msa1157930	0.812382	4.359585e-51	-8.615850e-47
Msa1120030	Msa1157930	-0.811022	8.617634e-51	-8.615850e-47
Msa1124960	Msa1157930	-0.832510	9.073111e-56	-8.615850e-47
Msa1139000	Msa1157930	0.800960	1.127551e-48	-8.615850e-47
Msa1157930	Msa1163160	0.801248	9.849555e-49	-8.615850e-47
Msa1157930	Msa1170410	-0.803571	3.271041e-49	-8.615850e-47
Msa1157930	Msa1222970	-0.802749	4.839643e-49	-8.615850e-47
Msa1157930	Msa1233910	-0.815333	9.753342e-52	-8.615850e-47
Msa1157930	Msa1235500	-0.802785	4.756778e-49	-8.615850e-47
Msa1157930	Msa1244720	0.815854	7.469957e-52	-8.615850e-47
Msa1157930	Msa1246510	-0.811136	8.139708e-51	-8.615850e-47
Msa1157930	Msa1251730	-0.801460	8.909020e-49	-8.615850e-47
Msa1157930	Msa1265340	0.801316	9.538833e-49	-8.615850e-47
Msa1157930	Msa1284260	-0.806590	7.639040e-50	-8.615850e-47
Msa1157930	Msa1310770	0.816575	5.152264e-52	-8.615850e-47
Msa1157930	Msa1315780	-0.811832	5.747266e-51	-8.615850e-47
Msa1157930	Msa1322860	-0.814023	1.902689e-51	-8.615850e-47
Msa1157930	Msa1322890	-0.810931	9.015698e-51	-8.615850e-47
Msa1157930	Msa1327050	-0.817617	3.005329e-52	-8.615850e-47
Msa1157930	Msa1346370	-0.811378	7.214027e-51	-8.615850e-47
Msa1157930	Msa1377500	-0.815242	1.021864e-51	-8.615850e-47
Msa1157930	Msa1388750	-0.803312	3.702159e-49	-8.615850e-47
Msa1157930	Msa1395900	-0.802041	6.771173e-49	-8.615850e-47
Msa1157930	Msa1400870	0.801838	7.452921e-49	-8.615850e-47
Msa1157930	Msa1402730	-0.812108	5.004553e-51	-8.615850e-47
Msa1157930	Msa1453780	0.801275	9.721776e-49	-8.615850e-47
Msa0532060	Msa1157930	-0.807570	4.738685e-50	-8.615850e-47
Msa0532170	Msa1157930	-0.819512	1.116977e-52	-8.615850e-47
Msa0553700	Msa1157930	0.802297	5.998792e-49	-8.615850e-47
Msa0585230	Msa1157930	-0.812779	3.570170e-51	-8.615850e-47
Msa0843780	Msa1157930	0.809032	2.311657e-50	-8.615850e-47
Msa0845590	Msa1157930	0.811993	5.300889e-51	-8.615850e-47
Msa0880020	Msa1157930	-0.847650	1.011307e-59	-8.615850e-47
Msa0880140	Msa1157930	-0.801810	7.552904e-49	-8.615850e-47
Msa0884410	Msa1157930	0.805100	1.570987e-49	-8.615850e-47
Msa0907950	Msa1157930	-0.804102	2.538330e-49	-8.615850e-47
Msa0923260	Msa1157930	0.802426	5.640864e-49	-8.615850e-47
Msa0931520	Msa1157930	-0.827412	1.587437e-54	-8.615850e-47
Msa0935670	Msa1157930	-0.808738	2.672221e-50	-8.615850e-47
Msa0947660	Msa1157930	-0.803344	3.645042e-49	-8.615850e-47
Msa0949400	Msa1157930	-0.805632	1.215292e-49	-8.615850e-47
Msa0962190	Msa1157930	0.819167	1.338691e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157930	MtrunA17_Chr7g0252261	98.901	273	3	0	1	273	1	273	0.0	555

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1157930	AT5G13430.1	72.101	276	70	3	1	273	1	272	3.31e-141	398
Msa1157930	AT5G13440.1	71.223	278	71	2	1	273	1	274	3.64e-141	398

Find 90 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGATCTCATTATGATATTTC+TGG	0.147844	7_4:+46960105	Msa1157930:CDS
GAAACAGTTGCAGGAATTTC+AGG	0.237158	7_4:-46959616	Msa1157920:three_prime_UTR
ATGATATTTCTGGCAGAATT+AGG	0.242646	7_4:+46960115	Msa1157930:CDS
GGTACCAACTTATTCATTCT+TGG	0.306788	7_4:+46960164	Msa1157930:CDS
AACAGATGACGATGTGAAAT+TGG	0.317786	7_4:+46959924	Msa1157930:CDS
GATCGGTGTTTGCACACATC+TGG	0.323690	7_4:+46960026	Msa1157930:CDS
TTCGCATACTTTGTCCTAAC+AGG	0.331271	7_4:+46959724	Msa1157930:CDS
CTGAAGGGGAGAAAGAATTC+AGG	0.347551	7_4:-46957810	Msa1157920:three_prime_UTR
GTGGAAGAAGGCGGTGGGAT+GGG	0.349403	7_4:-46957750	Msa1157920:three_prime_UTR
GGGACCTGCACCATACAATT+TGG	0.359660	7_4:+46960140	Msa1157930:CDS
TGCATTCCCTTGCCAAATGC+TGG	0.381560	7_4:+46960051	Msa1157930:CDS
TGGAAGAAGGCGGTGGGATG+GGG	0.385906	7_4:-46957749	Msa1157920:three_prime_UTR
CCGCCAAAGTCTCCAGCATT+TGG	0.391956	7_4:-46960063	Msa1157920:three_prime_UTR
CTCTCTCTGCATCTCCCTCA+TGG	0.405211	7_4:+46957688	Msa1157930:CDS
TCATATACAATCTTTGAAGA+TGG	0.405797	7_4:-46959652	Msa1157920:three_prime_UTR
TTAACAGCAGAAACAGTTGC+AGG	0.410008	7_4:-46959625	Msa1157920:three_prime_UTR
TTGCCAAATGCTGGAGACTT+TGG	0.416842	7_4:+46960060	Msa1157930:CDS
GCCCTCTTGCTTGGATCACC+AGG	0.425512	7_4:-46959700	Msa1157920:three_prime_UTR
GAATTCAGGGTGGATGGAAA+AGG	0.437093	7_4:-46957796	Msa1157920:three_prime_UTR
TATGCGAATGCCCTCTTGCT+TGG	0.442545	7_4:-46959709	Msa1157920:three_prime_UTR
AAACAAACCTTCCACCTGTT+AGG	0.452175	7_4:-46959738	Msa1157920:three_prime_UTR
CCAAATGCTGGAGACTTTGG+CGG	0.457248	7_4:+46960063	Msa1157930:CDS
GTGGAAAGCCAGTATTCATC+AGG	0.460050	7_4:+46959896	Msa1157930:CDS
CGATCACAACGAGCCATTCT+GGG	0.462447	7_4:-46960008	Msa1157920:three_prime_UTR
GCTCAGCATGTCCGCAAGTA+AGG	0.463109	7_4:+46959798	Msa1157930:CDS
AATTCAGGGTGGATGGAAAA+GGG	0.475500	7_4:-46957795	Msa1157920:three_prime_UTR
ACCTCCAAATTGTATGGTGC+AGG	0.482330	7_4:-46960144	Msa1157920:three_prime_UTR
GTTCTGCGCCTGATGAATAC+TGG	0.484039	7_4:-46959904	Msa1157920:three_prime_UTR
CAAACTTGAGGACAAGTAAA+CGG	0.484302	7_4:-46959774	Msa1157920:three_prime_UTR
GGTGGAAGAAGGCGGTGGGA+TGG	0.488335	7_4:-46957751	Msa1157920:three_prime_UTR
CACCAGGAGGAAACCGTTCA+TGG	0.490179	7_4:-46959684	Msa1157920:three_prime_UTR
GTTGGTACCTCCAAATTGTA+TGG	0.490642	7_4:-46960150	Msa1157920:three_prime_UTR
AGTAGTGCCTGGCTCAATGC+TGG	0.496319	7_4:-46959857	Msa1157920:three_prime_UTR
AGATCTGCGTTGATCGGAGG+TGG	0.496546	7_4:-46957769	Msa1157920:three_prime_UTR
ACCAACTTATTCATTCTTGG+AGG	0.499770	7_4:+46960167	Msa1157930:CDS
TCCTCCAAGAATGAATAAGT+TGG	0.514284	7_4:-46960168	Msa1157920:three_prime_UTR
GACGAAGAAGAAGATGTTGA+GGG	0.514634	7_4:+46957644	None:intergenic
GAGAAAGAATTCAGGGTGGA+TGG	0.515260	7_4:-46957802	Msa1157920:three_prime_UTR
GGGAAAACACTTACCTCTGA+AGG	0.518069	7_4:-46957826	Msa1157920:intron
AAGTAAGGATGTTCTTGCTA+TGG	0.519506	7_4:+46959813	Msa1157930:CDS
AGACGAAGAAGAAGATGTTG+AGG	0.520129	7_4:+46957643	None:intergenic
AACCATGAACGGTTTCCTCC+TGG	0.520987	7_4:+46959682	Msa1157930:CDS
CGTTGATCGGAGGTGGAAGA+AGG	0.521939	7_4:-46957762	Msa1157920:three_prime_UTR
TCGGAGGTGGAAGAAGGCGG+TGG	0.523668	7_4:-46957756	Msa1157920:three_prime_UTR
GAGGAAAACAAGTTGTTGAT+CGG	0.524976	7_4:+46960186	Msa1157930:CDS
CCAGAATGGCTCGTTGTGAT+CGG	0.536344	7_4:+46960009	Msa1157930:CDS
ATCGGTGTTTGCACACATCT+GGG	0.542075	7_4:+46960027	Msa1157930:CDS
GATCTGTCCAGCATTGAGCC+AGG	0.548945	7_4:+46959850	Msa1157930:CDS
GCACTACTGTCACTGTTAAG+TGG	0.549316	7_4:+46959872	Msa1157930:CDS
GGGGTTCTTAGAGAGGAAAG+AGG	0.552030	7_4:-46957730	Msa1157920:three_prime_UTR
CGGAGGTGGAAGAAGGCGGT+GGG	0.553191	7_4:-46957755	Msa1157920:three_prime_UTR
TGAAGGGGAGAAAGAATTCA+GGG	0.553314	7_4:-46957809	Msa1157920:three_prime_UTR
TATTTCTGGCAGAATTAGGA+AGG	0.553507	7_4:+46960119	Msa1157930:CDS
CTCTCTCAGAATCTTGCTGA+GGG	0.558977	7_4:-46959978	Msa1157920:three_prime_UTR
ATGCTGGAGACTTTGGCGGA+TGG	0.561425	7_4:+46960067	Msa1157930:CDS
CTTAGAGAGGAAAGAGGAGG+CGG	0.561712	7_4:-46957724	Msa1157920:three_prime_UTR
GGGGTCAGATCTGCGTTGAT+CGG	0.562035	7_4:-46957775	Msa1157920:three_prime_UTR
GAATTCTTTCTCCCCTTCAG+AGG	0.567157	7_4:+46957813	Msa1157930:CDS
TTGGCAAACAGTGTTGATGT+TGG	0.567703	7_4:+46959943	Msa1157930:CDS
ACTCTCTCAGAATCTTGCTG+AGG	0.573430	7_4:-46959979	Msa1157920:three_prime_UTR
GGAAAACACTTACCTCTGAA+GGG	0.576686	7_4:-46957825	Msa1157920:intron
TTAACAGTGACAGTAGTGCC+TGG	0.588903	7_4:-46959868	Msa1157920:three_prime_UTR
GCATACTTTGTCCTAACAGG+TGG	0.589727	7_4:+46959727	Msa1157930:CDS
ACTGTCACTGTTAAGTGGCG+TGG	0.593737	7_4:+46959877	Msa1157930:CDS
TCATAATGAGATCCATGACA+TGG	0.597841	7_4:-46960096	Msa1157920:three_prime_UTR
GTCAGATCTGCGTTGATCGG+AGG	0.599812	7_4:-46957772	Msa1157920:three_prime_UTR
GTGGGATGGGGTTCTTAGAG+AGG	0.600373	7_4:-46957737	Msa1157920:three_prime_UTR
ATGATGAACACAACCATGAA+CGG	0.601838	7_4:+46959671	Msa1157930:CDS
AAAGTCTCCAGCATTTGGCA+AGG	0.607108	7_4:-46960058	Msa1157920:three_prime_UTR
ACTTTGTCCTAACAGGTGGA+AGG	0.607644	7_4:+46959731	Msa1157930:CDS
AGAGAGTCAAGAACCCAGAA+TGG	0.614301	7_4:+46959995	Msa1157930:CDS
ACCTGCACCATACAATTTGG+AGG	0.619569	7_4:+46960143	Msa1157930:CDS
GAAAACACTTACCTCTGAAG+GGG	0.626939	7_4:-46957824	Msa1157920:intron
ACATGCTGAGCACAAACTTG+AGG	0.627184	7_4:-46959786	Msa1157920:three_prime_UTR
ATTCAGGGTGGATGGAAAAG+GGG	0.632839	7_4:-46957794	Msa1157920:three_prime_UTR
AGCAAGAACATCCTTACTTG+CGG	0.635054	7_4:-46959809	Msa1157920:three_prime_UTR
AAGTCTCCAGCATTTGGCAA+GGG	0.635128	7_4:-46960057	Msa1157920:three_prime_UTR
AGAGGAAAGAGGAGGCGGCG+TGG	0.637222	7_4:-46957719	Msa1157920:three_prime_UTR
ATTTCTGGCAGAATTAGGAA+GGG	0.638657	7_4:+46960120	Msa1157930:CDS
CTCCTGGTGATCCAAGCAAG+AGG	0.642258	7_4:+46959698	Msa1157930:CDS
TGATCGGAGGTGGAAGAAGG+CGG	0.650837	7_4:-46957759	Msa1157920:three_prime_UTR
TCCTGGTGATCCAAGCAAGA+GGG	0.654973	7_4:+46959699	Msa1157930:CDS
GCGTGGTAAGACCTCCATGA+GGG	0.655193	7_4:-46957702	Msa1157920:three_prime_UTR
CATAATGAGATCCATGACAT+GGG	0.657346	7_4:-46960095	Msa1157920:three_prime_UTR
GACAAGTAAACGGATCAAAG+AGG	0.665826	7_4:-46959764	Msa1157920:three_prime_UTR
CTCTTGCTTGGATCACCAGG+AGG	0.672619	7_4:-46959697	Msa1157920:three_prime_UTR
TCTCTGCATCTCCCTCATGG+AGG	0.676592	7_4:+46957691	Msa1157930:CDS
GTTCTTAGAGAGGAAAGAGG+AGG	0.689811	7_4:-46957727	Msa1157920:three_prime_UTR
GGCGTGGTAAGACCTCCATG+AGG	0.730085	7_4:-46957703	Msa1157920:three_prime_UTR
AGGGGAGAAAGAATTCAGGG+TGG	0.779436	7_4:-46957806	Msa1157920:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	CAACAAAAAATATTTTTTTT+AGG	-	chr7_4:46958225-46958244	Msa1157920:intron	10.0%
!!!	TTTGTTAAATATTTTATTGA+TGG	+	chr7_4:46958320-46958339	Msa1157930:intron	10.0%
!!!	ATTTATATTTTTATCTAACT+AGG	+	chr7_4:46959508-46959527	Msa1157930:intron	10.0%
!!	AATCAAATTAAATCAATTAA+TGG	-	chr7_4:46959541-46959560	Msa1157920:intron	10.0%
!!	AAAATATTTAACAAAATAGG+TGG	-	chr7_4:46958315-46958334	Msa1157920:intron	15.0%
!!!	TAATGATAAAATGTTTTTTG+TGG	+	chr7_4:46958459-46958478	Msa1157930:intron	15.0%
!!!	TTTTAGTTGTTACTTTTTTA+TGG	+	chr7_4:46958622-46958641	Msa1157930:intron	15.0%
!!!	TTTAGTTGTTACTTTTTTAT+GGG	+	chr7_4:46958623-46958642	Msa1157930:intron	15.0%
!!!	ATTTGATTCGTTTTATGTTA+GGG	+	chr7_4:46957921-46957940	Msa1157930:intron	20.0%
!!	TTGTGATAATTTATGTGTTT+AGG	+	chr7_4:46958029-46958048	Msa1157930:intron	20.0%
!!!	AATTTATGTGTTTAGGTTTT+CGG	+	chr7_4:46958036-46958055	Msa1157930:intron	20.0%
!!	TTAGAAAACAACAGTTAATA+AGG	-	chr7_4:46958657-46958676	Msa1157920:intron	20.0%
!!!	TACATAAATTACTTTTTTCC+AGG	+	chr7_4:46958686-46958705	Msa1157930:intron	20.0%
!!!	ACATAAATTACTTTTTTCCA+GGG	+	chr7_4:46958687-46958706	Msa1157930:intron	20.0%
!!!	AATAGTTTTGCTATTCATTT+AGG	+	chr7_4:46958937-46958956	Msa1157930:intron	20.0%
!!	AAGATAGCAATTTAGTATTA+TGG	-	chr7_4:46959024-46959043	Msa1157920:intron	20.0%
!!!	GATTTGATTCGTTTTATGTT+AGG	+	chr7_4:46957920-46957939	Msa1157930:intron	25.0%
!!!	TGTTAATTTTTTGCGCTATT+TGG	+	chr7_4:46958180-46958199	Msa1157930:intron	25.0%
!	ATTAAACCAGAGTTTCAAAA+AGG	-	chr7_4:46958443-46958462	Msa1157920:intron	25.0%
!!	ATTTTAAACCATTATGAACG+AGG	+	chr7_4:46958487-46958506	Msa1157930:intron	25.0%
!	ATTATGAACGAGGTATAATT+CGG	+	chr7_4:46958497-46958516	Msa1157930:intron	25.0%
!!	TAATTAGAAACAATTTTCCC+TGG	-	chr7_4:46958707-46958726	Msa1157920:intron	25.0%
!	AAGTGTAAAGTAACTGATAA+GGG	-	chr7_4:46958782-46958801	Msa1157920:intron	25.0%
!	TAAGTGTAAAGTAACTGATA+AGG	-	chr7_4:46958783-46958802	Msa1157920:intron	25.0%
!	ACCTTAAAAGACATGAATAT+AGG	+	chr7_4:46958878-46958897	Msa1157930:intron	25.0%
!!	TCCTATATTCATGTCTTTTA+AGG	-	chr7_4:46958882-46958901	Msa1157920:intron	25.0%
!	AAAAGACATGAATATAGGAA+TGG	+	chr7_4:46958883-46958902	Msa1157930:intron	25.0%
!	TAAAAAACTGCATGTTTAGT+TGG	+	chr7_4:46959114-46959133	Msa1157930:intron	25.0%
!	TGGTTATTGAATTGTTTAGT+TGG	+	chr7_4:46959134-46959153	Msa1157930:intron	25.0%
!!!	TTGACCCAAAATACTTTTTT+AGG	+	chr7_4:46959158-46959177	Msa1157930:intron	25.0%
!!!	TGACCCAAAATACTTTTTTA+GGG	+	chr7_4:46959159-46959178	Msa1157930:intron	25.0%
!!	TATCTATCTGTTCCATTTTA+TGG	+	chr7_4:46959234-46959253	Msa1157930:intron	25.0%
!	GCAATAATTATTCTATGTGT+AGG	+	chr7_4:46959308-46959327	Msa1157930:intron	25.0%
!	AATTATTCTATGTGTAGGTA+AGG	+	chr7_4:46959313-46959332	Msa1157930:intron	25.0%
!	GATCTATTAAGTTTGAATAG+AGG	-	chr7_4:46959358-46959377	Msa1157920:intron	25.0%
!	AGTTGCATATTATCTTACTT+TGG	+	chr7_4:46959402-46959421	Msa1157930:intron	25.0%
!	GTTGCATATTATCTTACTTT+GGG	+	chr7_4:46959403-46959422	Msa1157930:intron	25.0%
!	TTGCATATTATCTTACTTTG+GGG	+	chr7_4:46959404-46959423	Msa1157930:intron	25.0%
!!	TCATATACAATCTTTGAAGA+TGG	-	chr7_4:46959655-46959674	Msa1157920:three_prime_UTR	25.0%
	CATAGTAAAATAACAGGCAA+GGG	-	chr7_4:46957849-46957868	Msa1157920:intron	30.0%
	GTGTTTATTGTTGTGTATGA+AGG	+	chr7_4:46957981-46958000	Msa1157930:intron	30.0%
	CGCAAAAAATTAACATGCTT+CGG	-	chr7_4:46958175-46958194	Msa1157920:intron	30.0%
!	ATATATGTCTTTTTCCGTTG+TGG	+	chr7_4:46958258-46958277	Msa1157930:intron	30.0%
!	TATATGTCTTTTTCCGTTGT+GGG	+	chr7_4:46958259-46958278	Msa1157930:intron	30.0%
!!!	TTATTGATGGTTTTGATTCG+TGG	+	chr7_4:46958333-46958352	Msa1157930:intron	30.0%
	TCGTGATTCTCTACAATAAA+AGG	-	chr7_4:46958369-46958388	Msa1157920:intron	30.0%
	AAAAGTTTCTTGTATCTGCA+CGG	-	chr7_4:46958392-46958411	Msa1157920:intron	30.0%
	GAATTATACCTCGTTCATAA+TGG	-	chr7_4:46958498-46958517	Msa1157920:intron	30.0%
	TTCCATGACTATATCAAAAC+TGG	+	chr7_4:46958555-46958574	Msa1157930:intron	30.0%
!!	TTCCAGTTTTGATATAGTCA+TGG	-	chr7_4:46958560-46958579	Msa1157920:intron	30.0%
	ATGACTATATCAAAACTGGA+AGG	+	chr7_4:46958559-46958578	Msa1157930:intron	30.0%
	TGACTATATCAAAACTGGAA+GGG	+	chr7_4:46958560-46958579	Msa1157930:intron	30.0%
	TACACTTATGTACCAATGAA+AGG	+	chr7_4:46958795-46958814	Msa1157930:intron	30.0%
!!!	CCACCCTAAAAAAGTATTTT+GGG	-	chr7_4:46959165-46959184	Msa1157920:intron	30.0%
!!!	TCCACCCTAAAAAAGTATTT+TGG	-	chr7_4:46959166-46959185	Msa1157920:intron	30.0%
!	TAAGGCTGATCTATTCTTTT+GGG	+	chr7_4:46959331-46959350	Msa1157930:intron	30.0%
	TGCATATTATCTTACTTTGG+GGG	+	chr7_4:46959405-46959424	Msa1157930:intron	30.0%
!!	GATTTAATTTGATTGCATCC+AGG	+	chr7_4:46959547-46959566	Msa1157930:intron	30.0%
!!!	TAATGCTGTTTTCTTTTGTG+TGG	-	chr7_4:46959594-46959613	Msa1157920:three_prime_UTR	30.0%
	GGATCTCATTATGATATTTC+TGG	+	chr7_4:46960105-46960124	Msa1157930:CDS	30.0%
!!	ATGATATTTCTGGCAGAATT+AGG	+	chr7_4:46960115-46960134	Msa1157930:CDS	30.0%
	CCATAGTAAAATAACAGGCA+AGG	-	chr7_4:46957850-46957869	Msa1157920:intron	35.0%
!!!	CCTTGCCTGTTATTTTACTA+TGG	+	chr7_4:46957847-46957866	Msa1157930:intron	35.0%
	CACTGCCATAGTAAAATAAC+AGG	-	chr7_4:46957855-46957874	Msa1157920:intron	35.0%
!!!	CTGTTATTTTACTATGGCAG+TGG	+	chr7_4:46957853-46957872	Msa1157930:intron	35.0%
	GGATTTGATTCCAATCTTCT+GGG	+	chr7_4:46958057-46958076	Msa1157930:intron	35.0%
	ATATGAACATCCCAGAAGAT+TGG	-	chr7_4:46958070-46958089	Msa1157920:intron	35.0%
	AATACTCTCTCACCTTTCAT+TGG	-	chr7_4:46958810-46958829	Msa1157920:intron	35.0%
	AGACATGAATATAGGAATGG+AGG	+	chr7_4:46958886-46958905	Msa1157930:intron	35.0%
	GACATGAATATAGGAATGGA+GGG	+	chr7_4:46958887-46958906	Msa1157930:intron	35.0%
!!!	CCCAAAATACTTTTTTAGGG+TGG	+	chr7_4:46959162-46959181	Msa1157930:intron	35.0%
!	TCCATTTTATGGTTTACCTC+TGG	+	chr7_4:46959245-46959264	Msa1157930:intron	35.0%
	ACCAGAGGTAAACCATAAAA+TGG	-	chr7_4:46959249-46959268	Msa1157920:intron	35.0%
!	GTAAGGCTGATCTATTCTTT+TGG	+	chr7_4:46959330-46959349	Msa1157930:intron	35.0%
	ATGATGAACACAACCATGAA+CGG	+	chr7_4:46959671-46959690	Msa1157930:CDS	35.0%
	CAAACTTGAGGACAAGTAAA+CGG	-	chr7_4:46959777-46959796	Msa1157920:three_prime_UTR	35.0%
	AAGTAAGGATGTTCTTGCTA+TGG	+	chr7_4:46959813-46959832	Msa1157930:CDS	35.0%
	AACAGATGACGATGTGAAAT+TGG	+	chr7_4:46959924-46959943	Msa1157930:CDS	35.0%
	CATAATGAGATCCATGACAT+GGG	-	chr7_4:46960098-46960117	Msa1157920:three_prime_UTR	35.0%
	TCATAATGAGATCCATGACA+TGG	-	chr7_4:46960099-46960118	Msa1157920:three_prime_UTR	35.0%
!!	TATTTCTGGCAGAATTAGGA+AGG	+	chr7_4:46960119-46960138	Msa1157930:CDS	35.0%
!!	ATTTCTGGCAGAATTAGGAA+GGG	+	chr7_4:46960120-46960139	Msa1157930:CDS	35.0%
	GGTACCAACTTATTCATTCT+TGG	+	chr7_4:46960164-46960183	Msa1157930:CDS	35.0%
	ACCAACTTATTCATTCTTGG+AGG	+	chr7_4:46960167-46960186	Msa1157930:CDS	35.0%
	TCCTCCAAGAATGAATAAGT+TGG	-	chr7_4:46960171-46960190	Msa1157920:three_prime_UTR	35.0%
	GAGGAAAACAAGTTGTTGAT+CGG	+	chr7_4:46960186-46960205	Msa1157930:CDS	35.0%
	AATTCAGGGTGGATGGAAAA+GGG	-	chr7_4:46957798-46957817	Msa1157920:three_prime_UTR	40.0%
	TGAAGGGGAGAAAGAATTCA+GGG	-	chr7_4:46957812-46957831	Msa1157920:three_prime_UTR	40.0%
!	GAAAACACTTACCTCTGAAG+GGG	-	chr7_4:46957827-46957846	Msa1157920:intron	40.0%
	GGAAAACACTTACCTCTGAA+GGG	-	chr7_4:46957828-46957847	Msa1157920:intron	40.0%
	CGGATTTGATTCCAATCTTC+TGG	+	chr7_4:46958056-46958075	Msa1157930:intron	40.0%
!	GTGTGTTTGAAGTAGAATCG+AGG	+	chr7_4:46958113-46958132	Msa1157930:intron	40.0%
!	GTTTGAAGTAGAATCGAGGA+TGG	+	chr7_4:46958117-46958136	Msa1157930:intron	40.0%
	CCAGAGTTTCAAAAAGGTGA+GGG	-	chr7_4:46958437-46958456	Msa1157920:intron	40.0%
	ACCAGAGTTTCAAAAAGGTG+AGG	-	chr7_4:46958438-46958457	Msa1157920:intron	40.0%
	GATCAAATGATACAGACCAG+AGG	-	chr7_4:46959264-46959283	Msa1157920:intron	40.0%
	ATTGTGCGTATGCTATTCGT+TGG	+	chr7_4:46959447-46959466	Msa1157930:intron	40.0%
	TTGTGCGTATGCTATTCGTT+GGG	+	chr7_4:46959448-46959467	Msa1157930:intron	40.0%
!	TTGGGTTGTGTGTTAGTATG+AGG	+	chr7_4:46959466-46959485	Msa1157930:intron	40.0%
	GAAACAGTTGCAGGAATTTC+AGG	-	chr7_4:46959619-46959638	Msa1157920:three_prime_UTR	40.0%
	TTAACAGCAGAAACAGTTGC+AGG	-	chr7_4:46959628-46959647	Msa1157920:three_prime_UTR	40.0%
	TTCGCATACTTTGTCCTAAC+AGG	+	chr7_4:46959724-46959743	Msa1157930:CDS	40.0%
	AAACAAACCTTCCACCTGTT+AGG	-	chr7_4:46959741-46959760	Msa1157920:three_prime_UTR	40.0%
	GACAAGTAAACGGATCAAAG+AGG	-	chr7_4:46959767-46959786	Msa1157920:three_prime_UTR	40.0%
	AGCAAGAACATCCTTACTTG+CGG	-	chr7_4:46959812-46959831	Msa1157920:three_prime_UTR	40.0%
!!	TTGGCAAACAGTGTTGATGT+TGG	+	chr7_4:46959943-46959962	Msa1157930:CDS	40.0%
	GTTGGTACCTCCAAATTGTA+TGG	-	chr7_4:46960153-46960172	Msa1157920:three_prime_UTR	40.0%
	GTTCTTAGAGAGGAAAGAGG+AGG	-	chr7_4:46957730-46957749	Msa1157920:three_prime_UTR	45.0%
	ATTCAGGGTGGATGGAAAAG+GGG	-	chr7_4:46957797-46957816	Msa1157920:three_prime_UTR	45.0%
	GAATTCAGGGTGGATGGAAA+AGG	-	chr7_4:46957799-46957818	Msa1157920:three_prime_UTR	45.0%
	GAGAAAGAATTCAGGGTGGA+TGG	-	chr7_4:46957805-46957824	Msa1157920:three_prime_UTR	45.0%
	CTGAAGGGGAGAAAGAATTC+AGG	-	chr7_4:46957813-46957832	Msa1157920:three_prime_UTR	45.0%
	GAATTCTTTCTCCCCTTCAG+AGG	+	chr7_4:46957813-46957832	Msa1157930:CDS	45.0%
	GGGAAAACACTTACCTCTGA+AGG	-	chr7_4:46957829-46957848	Msa1157920:intron	45.0%
!	GTCTTTTTCCGTTGTGGGTT+TGG	+	chr7_4:46958264-46958283	Msa1157930:intron	45.0%
	TTGCAGTTCCAAACCCACAA+CGG	-	chr7_4:46958275-46958294	Msa1157920:intron	45.0%
!	AAGGTGAGGGAGCATGATTT+GGG	-	chr7_4:46958424-46958443	Msa1157920:intron	45.0%
!	AAAGGTGAGGGAGCATGATT+TGG	-	chr7_4:46958425-46958444	Msa1157920:intron	45.0%
!!!	CCCTCACCTTTTTGAAACTC+TGG	+	chr7_4:46958434-46958453	Msa1157930:intron	45.0%
	AGTGACTCAGTAGCAAAACC+TGG	-	chr7_4:46959568-46959587	Msa1157920:intron	45.0%
	GCATACTTTGTCCTAACAGG+TGG	+	chr7_4:46959727-46959746	Msa1157930:CDS	45.0%
	ACTTTGTCCTAACAGGTGGA+AGG	+	chr7_4:46959731-46959750	Msa1157930:CDS	45.0%
	ACATGCTGAGCACAAACTTG+AGG	-	chr7_4:46959789-46959808	Msa1157920:three_prime_UTR	45.0%
	TTAACAGTGACAGTAGTGCC+TGG	-	chr7_4:46959871-46959890	Msa1157920:three_prime_UTR	45.0%
	GCACTACTGTCACTGTTAAG+TGG	+	chr7_4:46959872-46959891	Msa1157930:CDS	45.0%
	GTGGAAAGCCAGTATTCATC+AGG	+	chr7_4:46959896-46959915	Msa1157930:CDS	45.0%
	CTCTCTCAGAATCTTGCTGA+GGG	-	chr7_4:46959981-46960000	Msa1157920:three_prime_UTR	45.0%
	ACTCTCTCAGAATCTTGCTG+AGG	-	chr7_4:46959982-46960001	Msa1157920:three_prime_UTR	45.0%
	AGAGAGTCAAGAACCCAGAA+TGG	+	chr7_4:46959995-46960014	Msa1157930:CDS	45.0%
!	ATCGGTGTTTGCACACATCT+GGG	+	chr7_4:46960027-46960046	Msa1157930:CDS	45.0%
	AAGTCTCCAGCATTTGGCAA+GGG	-	chr7_4:46960060-46960079	Msa1157920:three_prime_UTR	45.0%
	AAAGTCTCCAGCATTTGGCA+AGG	-	chr7_4:46960061-46960080	Msa1157920:three_prime_UTR	45.0%
	TTGCCAAATGCTGGAGACTT+TGG	+	chr7_4:46960060-46960079	Msa1157930:CDS	45.0%
	ACCTGCACCATACAATTTGG+AGG	+	chr7_4:46960143-46960162	Msa1157930:CDS	45.0%
	ACCTCCAAATTGTATGGTGC+AGG	-	chr7_4:46960147-46960166	Msa1157920:three_prime_UTR	45.0%
!!	AATAAAATATTTAACAAAAT+AGG	-	chr7_4:46958318-46958337	Msa1157920:intron	5.0%
	CTTAGAGAGGAAAGAGGAGG+CGG	-	chr7_4:46957727-46957746	Msa1157920:three_prime_UTR	50.0%
	GGGGTTCTTAGAGAGGAAAG+AGG	-	chr7_4:46957733-46957752	Msa1157920:three_prime_UTR	50.0%
	AGGGGAGAAAGAATTCAGGG+TGG	-	chr7_4:46957809-46957828	Msa1157920:three_prime_UTR	50.0%
	AACCATGAACGGTTTCCTCC+TGG	+	chr7_4:46959682-46959701	Msa1157930:CDS	50.0%
	TCCTGGTGATCCAAGCAAGA+GGG	+	chr7_4:46959699-46959718	Msa1157930:CDS	50.0%
	TATGCGAATGCCCTCTTGCT+TGG	-	chr7_4:46959712-46959731	Msa1157920:three_prime_UTR	50.0%
	ACTGTCACTGTTAAGTGGCG+TGG	+	chr7_4:46959877-46959896	Msa1157930:CDS	50.0%
	GTTCTGCGCCTGATGAATAC+TGG	-	chr7_4:46959907-46959926	Msa1157920:three_prime_UTR	50.0%
	CGATCACAACGAGCCATTCT+GGG	-	chr7_4:46960011-46960030	Msa1157920:three_prime_UTR	50.0%
	CCAGAATGGCTCGTTGTGAT+CGG	+	chr7_4:46960009-46960028	Msa1157930:CDS	50.0%
!	GATCGGTGTTTGCACACATC+TGG	+	chr7_4:46960026-46960045	Msa1157930:CDS	50.0%
	TGCATTCCCTTGCCAAATGC+TGG	+	chr7_4:46960051-46960070	Msa1157930:CDS	50.0%
	CCAAATGCTGGAGACTTTGG+CGG	+	chr7_4:46960063-46960082	Msa1157930:CDS	50.0%
!!	GGATGGTTTTGCCCATGTCA+TGG	+	chr7_4:46960084-46960103	Msa1157930:CDS	50.0%
	GGGACCTGCACCATACAATT+TGG	+	chr7_4:46960140-46960159	Msa1157930:CDS	50.0%
	CTCTCTCTGCATCTCCCTCA+TGG	+	chr7_4:46957688-46957707	Msa1157930:CDS	55.0%
	TCTCTGCATCTCCCTCATGG+AGG	+	chr7_4:46957691-46957710	Msa1157930:CDS	55.0%
	GCGTGGTAAGACCTCCATGA+GGG	-	chr7_4:46957705-46957724	Msa1157920:three_prime_UTR	55.0%
	GTGGGATGGGGTTCTTAGAG+AGG	-	chr7_4:46957740-46957759	Msa1157920:three_prime_UTR	55.0%
	TGATCGGAGGTGGAAGAAGG+CGG	-	chr7_4:46957762-46957781	Msa1157920:three_prime_UTR	55.0%
	CGTTGATCGGAGGTGGAAGA+AGG	-	chr7_4:46957765-46957784	Msa1157920:three_prime_UTR	55.0%
!	AGATCTGCGTTGATCGGAGG+TGG	-	chr7_4:46957772-46957791	Msa1157920:three_prime_UTR	55.0%
!	GTCAGATCTGCGTTGATCGG+AGG	-	chr7_4:46957775-46957794	Msa1157920:three_prime_UTR	55.0%
!	GGGGTCAGATCTGCGTTGAT+CGG	-	chr7_4:46957778-46957797	Msa1157920:three_prime_UTR	55.0%
	CACCAGGAGGAAACCGTTCA+TGG	-	chr7_4:46959687-46959706	Msa1157920:three_prime_UTR	55.0%
	CTCTTGCTTGGATCACCAGG+AGG	-	chr7_4:46959700-46959719	Msa1157920:three_prime_UTR	55.0%
	CTCCTGGTGATCCAAGCAAG+AGG	+	chr7_4:46959698-46959717	Msa1157930:CDS	55.0%
	GCTCAGCATGTCCGCAAGTA+AGG	+	chr7_4:46959798-46959817	Msa1157930:CDS	55.0%
!	GATCTGTCCAGCATTGAGCC+AGG	+	chr7_4:46959850-46959869	Msa1157930:CDS	55.0%
	AGTAGTGCCTGGCTCAATGC+TGG	-	chr7_4:46959860-46959879	Msa1157920:three_prime_UTR	55.0%
	CCGATCACAACGAGCCATTC+TGG	-	chr7_4:46960012-46960031	Msa1157920:three_prime_UTR	55.0%
	CCGCCAAAGTCTCCAGCATT+TGG	-	chr7_4:46960066-46960085	Msa1157920:three_prime_UTR	55.0%
	ATGCTGGAGACTTTGGCGGA+TGG	+	chr7_4:46960067-46960086	Msa1157930:CDS	55.0%
	GGCGTGGTAAGACCTCCATG+AGG	-	chr7_4:46957706-46957725	Msa1157920:three_prime_UTR	60.0%
	TGGAAGAAGGCGGTGGGATG+GGG	-	chr7_4:46957752-46957771	Msa1157920:three_prime_UTR	60.0%
	GTGGAAGAAGGCGGTGGGAT+GGG	-	chr7_4:46957753-46957772	Msa1157920:three_prime_UTR	60.0%
	GCCCTCTTGCTTGGATCACC+AGG	-	chr7_4:46959703-46959722	Msa1157920:three_prime_UTR	60.0%
	AGAGGAAAGAGGAGGCGGCG+TGG	-	chr7_4:46957722-46957741	Msa1157920:three_prime_UTR	65.0%
	GGTGGAAGAAGGCGGTGGGA+TGG	-	chr7_4:46957754-46957773	Msa1157920:three_prime_UTR	65.0%
	CGGAGGTGGAAGAAGGCGGT+GGG	-	chr7_4:46957758-46957777	Msa1157920:three_prime_UTR	65.0%
	TCGGAGGTGGAAGAAGGCGG+TGG	-	chr7_4:46957759-46957778	Msa1157920:three_prime_UTR	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	46957657	46960212	46957657	ID=Msa1157930;Name=Msa1157930
chr7_4	mRNA	46957657	46960212	46957657	ID=Msa1157930-mRNA-1;Parent=Msa1157930;Name=Msa1157930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|273
chr7_4	exon	46957657	46957834	46957657	ID=Msa1157930-mRNA-1:exon:12409;Parent=Msa1157930-mRNA-1
chr7_4	exon	46959569	46960212	46959569	ID=Msa1157930-mRNA-1:exon:12410;Parent=Msa1157930-mRNA-1
chr7_4	CDS	46957657	46957834	46957657	ID=Msa1157930-mRNA-1:cds;Parent=Msa1157930-mRNA-1
chr7_4	CDS	46959569	46960212	46959569	ID=Msa1157930-mRNA-1:cds;Parent=Msa1157930-mRNA-1

Gene Sequence

>Msa1157930

ATGTTGAGGGTTGCATCTAAGAAGCTTTCTTCTCTCTCTGCATCTCCCTCATGGAGGTCTTACCACGCCGCCTCCTCTTTCCTCTCTAAGAACCCCATCCCACCGCCTTCTTCCACCTCCGATCAACGCAGATCTGACCCCTTTTCCATCCACCCTGAATTCTTTCTCCCCTTCAGAGGTTTTGCTACTGAGTCACTGATCCACACAAAAGAAAACAGCATTATTCCTGAAATTCCTGCAACTGTTTCTGCTGTTAAAAATCCATCTTCAAAGATTGTATATGATGAACACAACCATGAACGGTTTCCTCCTGGTGATCCAAGCAAGAGGGCATTCGCATACTTTGTCCTAACAGGTGGAAGGTTTGTTTATGCCTCTTTGATCCGTTTACTTGTCCTCAAGTTTGTGCTCAGCATGTCCGCAAGTAAGGATGTTCTTGCTATGGCTTCACTTGAAGTTGATCTGTCCAGCATTGAGCCAGGCACTACTGTCACTGTTAAGTGGCGTGGAAAGCCAGTATTCATCAGGCGCAGAACAGATGACGATGTGAAATTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGACCCTCAGCAAGATTCTGAGAGAGTCAAGAACCCAGAATGGCTCGTTGTGATCGGTGTTTGCACACATCTGGGTTGCATTCCCTTGCCAAATGCTGGAGACTTTGGCGGATGGTTTTGCCCATGTCATGGATCTCATTATGATATTTCTGGCAGAATTAGGAAGGGACCTGCACCATACAATTTGGAGGTACCAACTTATTCATTCTTGGAGGAAAACAAGTTGTTGATCGGTTAA

Protein sequence

>Msa1157930

MLRVASKKLSSLSASPSWRSYHAASSFLSKNPIPPPSSTSDQRRSDPFSIHPEFFLPFRGFATESLIHTKENSIIPEIPATVSAVKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVGSLRDPQQDSERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG*