AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163930 MtrunA17_Chr7g0261391 99.415 342 2 0 1 342 25 366 0.0 688
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163930 AT3G54690.1 78.743 334 67 1 9 342 21 350 0.0 523

Find 115 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTAAAATCTCTAAAA+TGG 0.140742 7_4:+55400046 Msa1163930:exon
CGGCAAGAGCCTCATCTTTA+AGG 0.222667 7_4:+55400691 Msa1163930:CDS
TCAAATAATTTGCATCCTTT+TGG 0.240041 7_4:-55402220 None:intergenic
TACTGTTGCTATTGCGCTTA+TGG 0.242028 7_4:+55400613 Msa1163930:CDS
CAGAGAATCGGATTTGATTA+TGG 0.267598 7_4:+55401123 Msa1163930:CDS
ACCCACAGTCAGCTTGAAAA+TGG 0.281877 7_4:-55401269 None:intergenic
TTGCATGGTTTGGTTTCAGC+TGG 0.286035 7_4:+55402003 Msa1163930:CDS
TAGATCGTTAAGGCTTTGTT+TGG 0.320604 7_4:-55400102 None:intergenic
GTAACCGGCGCAAGGTTAAA+AGG 0.326330 7_4:-55400560 None:intergenic
CAGCTGGGTTGTGATTAATT+CGG 0.345888 7_4:+55402019 Msa1163930:exon
CAGCTGGGTTGTGATTAATT+CGG 0.345888 7_4:+55402065 Msa1163930:three_prime_UTR
CGGGTTAATGTTGCATGGTT+TGG 0.347137 7_4:+55402039 Msa1163930:three_prime_UTR
CAGTAAAACAAGCTCGGAAT+AGG 0.348532 7_4:-55402166 None:intergenic
TTGCATGGTTTGGTTTCAGC+TGG 0.356973 7_4:+55402049 Msa1163930:three_prime_UTR
CGCGGGTGAAGGATAGGGTT+TGG 0.363661 7_4:-55400205 None:intergenic
AATCATCCCGCTGGGAAAAT+CGG 0.384016 7_4:+55400671 Msa1163930:CDS
AAATCCGATTCTCTGCAAAT+AGG 0.391529 7_4:-55401115 None:intergenic
TGTTGAAGGGAACGCGCTTT+CGG 0.393489 7_4:+55400490 Msa1163930:CDS
AGGTGCTTCCATCTTCTTCA+TGG 0.402191 7_4:-55401917 None:intergenic
AGCTGGGTTGTGATTAATTC+GGG 0.403493 7_4:+55402020 Msa1163930:exon
AGCTGGGTTGTGATTAATTC+GGG 0.403493 7_4:+55402066 Msa1163930:three_prime_UTR
GTCAGGAATCCGAGAACTAT+TGG 0.404031 7_4:+55401871 Msa1163930:intron
AAATTATTTGATGCTATGCC+TGG 0.419577 7_4:+55402232 Msa1163930:three_prime_UTR
TGCTATGCCTGGCTTTGTAC+TGG 0.421872 7_4:+55402243 Msa1163930:three_prime_UTR
CTCTCTAAAATCTCTAAAAT+GGG 0.425427 7_4:+55400047 Msa1163930:exon
GATGACAATCGTCGTCTGAT+TGG 0.432455 7_4:+55401196 Msa1163930:CDS
GATGATGACAATGTTGTGAT+TGG 0.432692 7_4:+55401970 Msa1163930:CDS
GATTGTCACCTTGCATGGTT+TGG 0.432707 7_4:+55401993 Msa1163930:CDS
TACTTCTACGGCGATTCAAA+TGG 0.434525 7_4:+55400580 Msa1163930:CDS
ACTTCCTATTTGCAGAGAAT+CGG 0.434583 7_4:+55401111 Msa1163930:CDS
CTCGTTCTTCTCAGCAAATC+CGG 0.435582 7_4:+55400395 Msa1163930:CDS
ATCGCTGTTACGTCTGTTGA+AGG 0.437983 7_4:+55400476 Msa1163930:CDS
GCATCCACTGCCATAGCATC+TGG 0.451578 7_4:-55401895 None:intergenic
GCGGGTGAAGGATAGGGTTT+GGG 0.453172 7_4:-55400204 None:intergenic
TTCACCGGCGTCGGAAAATC+CGG 0.456881 7_4:+55400257 Msa1163930:CDS
AGATCGTTAAGGCTTTGTTT+GGG 0.465022 7_4:-55400101 None:intergenic
TTTCGTCAATTAGATCGTTA+AGG 0.465162 7_4:-55400112 None:intergenic
AGTAAAACAAGCTCGGAATA+GGG 0.466397 7_4:-55402165 None:intergenic
AGCGCCTTTCGCTCTAGCAC+AGG 0.473244 7_4:-55400447 None:intergenic
TATGTGAGAAAACGAAAGAA+TGG 0.473252 7_4:-55400005 None:intergenic
CCTTGCGCCGGTTACTTCTA+CGG 0.474867 7_4:+55400568 Msa1163930:CDS
ATTGGGATTGTCACCTTGCA+TGG 0.486293 7_4:+55401988 Msa1163930:CDS
GCATCTGGACCAATAGTTCT+CGG 0.490112 7_4:-55401880 None:intergenic
CTGTGGGTAAAATGTGCAAC+AGG 0.492829 7_4:+55401284 Msa1163930:CDS
ACCGGCACCGTCTTCTTCAC+CGG 0.497744 7_4:+55400242 Msa1163930:CDS
GAAGAGCGCGGGTGAAGGAT+AGG 0.498664 7_4:-55400211 None:intergenic
TGTTTGGGAGAAACACCGTT+TGG 0.505166 7_4:-55400086 None:intergenic
TGAATCGCCGTAGAAGTAAC+CGG 0.505417 7_4:-55400575 None:intergenic
CTTGTGGAGCTGACAAGTAA+AGG 0.506180 7_4:+55401151 Msa1163930:CDS
AACTATTGGTCCAGATGCTA+TGG 0.513711 7_4:+55401885 Msa1163930:CDS
GTCGCCGTGAAGAGCATCGA+CGG 0.515460 7_4:-55400345 None:intergenic
TTTGATTATGGATCAGCTTG+TGG 0.515663 7_4:+55401135 Msa1163930:CDS
ACCGTCTTCTTCACCGGCGT+CGG 0.518697 7_4:+55400248 Msa1163930:CDS
TGCATGGTTTGGTTTCAGCT+GGG 0.520138 7_4:+55402004 Msa1163930:CDS
TCGCCGTGAAGAGCATCGAC+GGG 0.523637 7_4:-55400344 None:intergenic
AGATGTGATGAAGAAGGATG+AGG 0.529909 7_4:+55401087 Msa1163930:CDS
TGCATGGTTTGGTTTCAGCT+GGG 0.533994 7_4:+55402050 Msa1163930:three_prime_UTR
ATTAGCAGCATACTCATCCT+TGG 0.536995 7_4:-55400651 None:intergenic
ATGATGACAATGTTGTGATT+GGG 0.540237 7_4:+55401971 Msa1163930:CDS
TCTCTCCCACATTGTCCAAA+CGG 0.547474 7_4:+55400071 Msa1163930:CDS
GGTAAGAGATGTGATGAAGA+AGG 0.548322 7_4:+55401081 Msa1163930:intron
AAGAGCGCGGGTGAAGGATA+GGG 0.551707 7_4:-55400210 None:intergenic
GAAAGGAGGAGCGGATTCCG+AGG 0.553487 7_4:-55400316 None:intergenic
GATCGAAGAAGAAATTGAGA+TGG 0.556065 7_4:-55400169 None:intergenic
GTTCCCTGTGCTAGAGCGAA+AGG 0.560777 7_4:+55400443 Msa1163930:CDS
TTTGAAGAGATCAGTGAGGG+TGG 0.561033 7_4:-55400135 None:intergenic
TATGCTGCTAATCATCCCGC+TGG 0.562134 7_4:+55400662 Msa1163930:CDS
AGCTGAAACCAAACCATGCA+AGG 0.562900 7_4:-55402001 None:intergenic
TCACAAACACTCGTCTCCCT+CGG 0.566153 7_4:+55400299 Msa1163930:CDS
CGGATGACCAGTACAAAGCC+AGG 0.567136 7_4:-55402250 None:intergenic
GAAACACCGTTTGGACAATG+TGG 0.579335 7_4:-55400077 None:intergenic
GTTGAGAAGAGCGCGGGTGA+AGG 0.580274 7_4:-55400216 None:intergenic
GATGCTCTTCACGGCGACAT+CGG 0.581441 7_4:+55400350 Msa1163930:CDS
TCGCTGTTACGTCTGTTGAA+GGG 0.581999 7_4:+55400477 Msa1163930:CDS
TGAAGGATAGGGTTTGGGAA+TGG 0.582904 7_4:-55400199 None:intergenic
CGCGCTCTTCTCAACACCAC+CGG 0.585526 7_4:+55400224 Msa1163930:CDS
TAATTCGGGTTAATGTTGCA+TGG 0.585617 7_4:+55402034 Msa1163930:three_prime_UTR
TCTCAGCAAATCCGGCGCCA+CGG 0.587634 7_4:+55400403 Msa1163930:CDS
TATTGACAGTAAAACAAGCT+CGG 0.590668 7_4:-55402172 None:intergenic
TGGTCCAGATGCTATGGCAG+TGG 0.592765 7_4:+55401891 Msa1163930:CDS
GCCGGTGAAGAAGACGGTGC+CGG 0.594533 7_4:-55400243 None:intergenic
TGAAGGGAACGCGCTTTCGG+CGG 0.596665 7_4:+55400493 Msa1163930:CDS
TATGACCGTGCATTTGCCGT+TGG 0.599374 7_4:+55400523 Msa1163930:CDS
CTATTGCGCTTATGGCGGCA+CGG 0.599572 7_4:+55400621 Msa1163930:CDS
CTGATTGGAACATTTACCGA+TGG 0.603091 7_4:+55401211 Msa1163930:CDS
TCTCTCCAACGGCAAATGCA+CGG 0.611296 7_4:-55400528 None:intergenic
CGAGTACATCGCGATCGGAG+AGG 0.611708 7_4:-55400376 None:intergenic
AAATGCAGACCTTAAAGATG+AGG 0.616681 7_4:-55400700 None:intergenic
GAGCTGACAAGTAAAGGATG+TGG 0.616885 7_4:+55401157 Msa1163930:CDS
TGTTGCTATTGCGCTTATGG+CGG 0.617267 7_4:+55400616 Msa1163930:CDS
GCGCCTTTCGCTCTAGCACA+GGG 0.617319 7_4:-55400446 None:intergenic
ACATTGTCATCATCTATCAC+AGG 0.621869 7_4:-55401961 None:intergenic
AGTGGATGCCATGAAGAAGA+TGG 0.622121 7_4:+55401909 Msa1163930:CDS
TCCGACGCCGGTGAAGAAGA+CGG 0.623061 7_4:-55400249 None:intergenic
GGATTTGAAGAGATCAGTGA+GGG 0.623804 7_4:-55400138 None:intergenic
CGCCGTGAAGAGCATCGACG+GGG 0.627616 7_4:-55400343 None:intergenic
CGTCGTACACTCAAAGCTAG+TGG 0.627850 7_4:+55401241 Msa1163930:CDS
AAGAACGAGTACATCGCGAT+CGG 0.629589 7_4:-55400381 None:intergenic
AAAGGAGGAGCGGATTCCGA+GGG 0.632368 7_4:-55400315 None:intergenic
GGTGAAGAAGACGGTGCCGG+TGG 0.638339 7_4:-55400240 None:intergenic
GCGCCACGGAGGAGCTTCTG+CGG 0.639870 7_4:+55400417 Msa1163930:CDS
CAGCAAATCCGGCGCCACGG+AGG 0.640587 7_4:+55400406 Msa1163930:CDS
GGTGGTGTTGAGAAGAGCGC+GGG 0.640618 7_4:-55400222 None:intergenic
CCGTAGAAGTAACCGGCGCA+AGG 0.642460 7_4:-55400568 None:intergenic
GGACATAACTCTCTCTCCAA+CGG 0.642771 7_4:-55400539 None:intergenic
GTACTTCAATAATAGACGCA+CGG 0.652522 7_4:-55402270 None:intergenic
ATGCTGCTAATCATCCCGCT+GGG 0.653850 7_4:+55400663 Msa1163930:CDS
TGTACGACGCAGATCACCAT+CGG 0.654051 7_4:-55401227 None:intergenic
AAAACAAGCTCGGAATAGGG+CGG 0.667459 7_4:-55402162 None:intergenic
AAACACCGTTTGGACAATGT+GGG 0.667852 7_4:-55400076 None:intergenic
CGGTGGTGTTGAGAAGAGCG+CGG 0.668110 7_4:-55400223 None:intergenic
AAGCCGCAGAAGCTCCTCCG+TGG 0.686592 7_4:-55400420 None:intergenic
GGCGGCACGGAATCTTACCA+AGG 0.690692 7_4:+55400634 Msa1163930:CDS
GCCGTGAAGAGCATCGACGG+GGG 0.709363 7_4:-55400342 None:intergenic
GGGATTTGAAGAGATCAGTG+AGG 0.737041 7_4:-55400139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTAGTTAATTAATC+GGG + chr7_4:55400857-55400876 Msa1163930:intron 10.0%
!! TTAATAAAAATTTAAGTGTT+TGG + chr7_4:55401682-55401701 Msa1163930:intron 10.0%
!! TATATATTAGTTAATTAATC+GGG + chr7_4:55400857-55400876 Msa1163930:intron 10.0%
!! TTAATAAAAATTTAAGTGTT+TGG + chr7_4:55401682-55401701 Msa1163930:intron 10.0%
!! TCACATACATATTAATTATT+TGG - chr7_4:55401772-55401791 None:intergenic 15.0%
!!! GATTTTTTTCATCTTATTTT+TGG + chr7_4:55402196-55402215 Msa1163930:three_prime_UTR 15.0%
!! TCACATACATATTAATTATT+TGG - chr7_4:55401772-55401791 None:intergenic 15.0%
!!! GATTTTTTTCATCTTATTTT+TGG + chr7_4:55402196-55402215 Msa1163930:three_prime_UTR 15.0%
!!! TGAAAAGAATTTAGAACATT+TGG + chr7_4:55400895-55400914 Msa1163930:intron 20.0%
!! GTGAATTATTTGAATCAATT+AGG + chr7_4:55400998-55401017 Msa1163930:intron 20.0%
!!! TGAAAAGAATTTAGAACATT+TGG + chr7_4:55400895-55400914 Msa1163930:intron 20.0%
!! GTGAATTATTTGAATCAATT+AGG + chr7_4:55400998-55401017 Msa1163930:intron 20.0%
!!! TCTCTCTAAAATCTCTAAAA+TGG + chr7_4:55400046-55400065 Msa1163930:exon 25.0%
!!! CTCTCTAAAATCTCTAAAAT+GGG + chr7_4:55400047-55400066 Msa1163930:exon 25.0%
! AGATCTAGTAATTATTGTTC+TGG + chr7_4:55400815-55400834 Msa1163930:intron 25.0%
! GTTAATTAATCGGGTTAATT+AGG + chr7_4:55400866-55400885 Msa1163930:intron 25.0%
!!! GTTATAGATCTCTAAAATTG+TGG + chr7_4:55400944-55400963 Msa1163930:intron 25.0%
! TTTGTGAATGAGATGTAATT+TGG + chr7_4:55401037-55401056 Msa1163930:intron 25.0%
! TGATAACACTTTGTACTAAA+TGG - chr7_4:55401575-55401594 None:intergenic 25.0%
! TTGGTTAATGTTAGATAGAA+TGG + chr7_4:55401701-55401720 Msa1163930:intron 25.0%
!! TAGAATGGAATCATTGATTA+TGG + chr7_4:55401716-55401735 Msa1163930:intron 25.0%
!! AGAATGGAATCATTGATTAT+GGG + chr7_4:55401717-55401736 Msa1163930:intron 25.0%
!!! TGATGTTAAACCTTTGTTTT+TGG + chr7_4:55401845-55401864 Msa1163930:intron 25.0%
!!! GATGTTAAACCTTTGTTTTT+GGG + chr7_4:55401846-55401865 Msa1163930:intron 25.0%
!!! TCAAATAATTTGCATCCTTT+TGG - chr7_4:55402223-55402242 None:intergenic 25.0%
!!! TCTCTCTAAAATCTCTAAAA+TGG + chr7_4:55400046-55400065 Msa1163930:exon 25.0%
!!! CTCTCTAAAATCTCTAAAAT+GGG + chr7_4:55400047-55400066 Msa1163930:exon 25.0%
! AGATCTAGTAATTATTGTTC+TGG + chr7_4:55400815-55400834 Msa1163930:intron 25.0%
! GTTAATTAATCGGGTTAATT+AGG + chr7_4:55400866-55400885 Msa1163930:intron 25.0%
!!! GTTATAGATCTCTAAAATTG+TGG + chr7_4:55400944-55400963 Msa1163930:intron 25.0%
! TTTGTGAATGAGATGTAATT+TGG + chr7_4:55401037-55401056 Msa1163930:intron 25.0%
! TGATAACACTTTGTACTAAA+TGG - chr7_4:55401575-55401594 None:intergenic 25.0%
! TTGGTTAATGTTAGATAGAA+TGG + chr7_4:55401701-55401720 Msa1163930:intron 25.0%
!! TAGAATGGAATCATTGATTA+TGG + chr7_4:55401716-55401735 Msa1163930:intron 25.0%
!! AGAATGGAATCATTGATTAT+GGG + chr7_4:55401717-55401736 Msa1163930:intron 25.0%
!!! TGATGTTAAACCTTTGTTTT+TGG + chr7_4:55401845-55401864 Msa1163930:intron 25.0%
!!! GATGTTAAACCTTTGTTTTT+GGG + chr7_4:55401846-55401865 Msa1163930:intron 25.0%
!!! TCAAATAATTTGCATCCTTT+TGG - chr7_4:55402223-55402242 None:intergenic 25.0%
TATGTGAGAAAACGAAAGAA+TGG - chr7_4:55400008-55400027 None:intergenic 30.0%
TTTCGTCAATTAGATCGTTA+AGG - chr7_4:55400115-55400134 None:intergenic 30.0%
!!! GAAATTGAGATGGTTTTGTT+GGG - chr7_4:55400162-55400181 None:intergenic 30.0%
!!! AGAAATTGAGATGGTTTTGT+TGG - chr7_4:55400163-55400182 None:intergenic 30.0%
TGACAGGAAAATGATGATTA+AGG - chr7_4:55401348-55401367 None:intergenic 30.0%
TGAGTTTGAACAATTATGAC+AGG - chr7_4:55401364-55401383 None:intergenic 30.0%
TTTCTGCACACTCTAATATA+GGG + chr7_4:55401400-55401419 Msa1163930:intron 30.0%
!!! CTAGATTTGTGTTTTGTTTG+CGG + chr7_4:55401441-55401460 Msa1163930:intron 30.0%
TTGTATCCATAGACCTTTAT+TGG - chr7_4:55401803-55401822 None:intergenic 30.0%
ATGATGACAATGTTGTGATT+GGG + chr7_4:55401971-55401990 Msa1163930:CDS 30.0%
TATTGACAGTAAAACAAGCT+CGG - chr7_4:55402175-55402194 None:intergenic 30.0%
!!! CATCTTATTTTTGGTCCAAA+AGG + chr7_4:55402205-55402224 Msa1163930:three_prime_UTR 30.0%
AAATTATTTGATGCTATGCC+TGG + chr7_4:55402232-55402251 Msa1163930:three_prime_UTR 30.0%
TATGTGAGAAAACGAAAGAA+TGG - chr7_4:55400008-55400027 None:intergenic 30.0%
TTTCGTCAATTAGATCGTTA+AGG - chr7_4:55400115-55400134 None:intergenic 30.0%
!!! GAAATTGAGATGGTTTTGTT+GGG - chr7_4:55400162-55400181 None:intergenic 30.0%
!!! AGAAATTGAGATGGTTTTGT+TGG - chr7_4:55400163-55400182 None:intergenic 30.0%
TGACAGGAAAATGATGATTA+AGG - chr7_4:55401348-55401367 None:intergenic 30.0%
TGAGTTTGAACAATTATGAC+AGG - chr7_4:55401364-55401383 None:intergenic 30.0%
TTTCTGCACACTCTAATATA+GGG + chr7_4:55401400-55401419 Msa1163930:intron 30.0%
!!! CTAGATTTGTGTTTTGTTTG+CGG + chr7_4:55401441-55401460 Msa1163930:intron 30.0%
TTGTATCCATAGACCTTTAT+TGG - chr7_4:55401803-55401822 None:intergenic 30.0%
ATGATGACAATGTTGTGATT+GGG + chr7_4:55401971-55401990 Msa1163930:CDS 30.0%
TATTGACAGTAAAACAAGCT+CGG - chr7_4:55402175-55402194 None:intergenic 30.0%
!!! CATCTTATTTTTGGTCCAAA+AGG + chr7_4:55402205-55402224 Msa1163930:three_prime_UTR 30.0%
AAATTATTTGATGCTATGCC+TGG + chr7_4:55402232-55402251 Msa1163930:three_prime_UTR 30.0%
!! AGATCGTTAAGGCTTTGTTT+GGG - chr7_4:55400104-55400123 None:intergenic 35.0%
!! TAGATCGTTAAGGCTTTGTT+TGG - chr7_4:55400105-55400124 None:intergenic 35.0%
GATCGAAGAAGAAATTGAGA+TGG - chr7_4:55400172-55400191 None:intergenic 35.0%
AAATGCAGACCTTAAAGATG+AGG - chr7_4:55400703-55400722 None:intergenic 35.0%
TCTGCATTTCGTAGAAATCA+TGG + chr7_4:55400772-55400791 Msa1163930:intron 35.0%
!! GATCTCTAAAATTGTGGTTG+TGG + chr7_4:55400950-55400969 Msa1163930:intron 35.0%
TAAAATTGTGGTTGTGGATC+AGG + chr7_4:55400956-55400975 Msa1163930:intron 35.0%
TTATGATTGTGTATGTGTGC+AGG + chr7_4:55401060-55401079 Msa1163930:intron 35.0%
ACTTCCTATTTGCAGAGAAT+CGG + chr7_4:55401111-55401130 Msa1163930:CDS 35.0%
AAATCCGATTCTCTGCAAAT+AGG - chr7_4:55401118-55401137 None:intergenic 35.0%
CAGAGAATCGGATTTGATTA+TGG + chr7_4:55401123-55401142 Msa1163930:CDS 35.0%
TTTGATTATGGATCAGCTTG+TGG + chr7_4:55401135-55401154 Msa1163930:CDS 35.0%
GTTTCTGCACACTCTAATAT+AGG + chr7_4:55401399-55401418 Msa1163930:intron 35.0%
TGTGATGCTTGATCCAATAA+AGG + chr7_4:55401787-55401806 Msa1163930:intron 35.0%
CTTGATCCAATAAAGGTCTA+TGG + chr7_4:55401794-55401813 Msa1163930:intron 35.0%
GGTCTATGGATACAAACATA+TGG + chr7_4:55401808-55401827 Msa1163930:intron 35.0%
ACATTGTCATCATCTATCAC+AGG - chr7_4:55401964-55401983 None:intergenic 35.0%
GATGATGACAATGTTGTGAT+TGG + chr7_4:55401970-55401989 Msa1163930:CDS 35.0%
! TAATTCGGGTTAATGTTGCA+TGG + chr7_4:55402034-55402053 Msa1163930:three_prime_UTR 35.0%
AGTAAAACAAGCTCGGAATA+GGG - chr7_4:55402168-55402187 None:intergenic 35.0%
!!! GAGCTTGTTTTACTGTCAAT+AGG + chr7_4:55402174-55402193 Msa1163930:three_prime_UTR 35.0%
GTACTTCAATAATAGACGCA+CGG - chr7_4:55402273-55402292 None:intergenic 35.0%
!! AGATCGTTAAGGCTTTGTTT+GGG - chr7_4:55400104-55400123 None:intergenic 35.0%
!! TAGATCGTTAAGGCTTTGTT+TGG - chr7_4:55400105-55400124 None:intergenic 35.0%
GATCGAAGAAGAAATTGAGA+TGG - chr7_4:55400172-55400191 None:intergenic 35.0%
AAATGCAGACCTTAAAGATG+AGG - chr7_4:55400703-55400722 None:intergenic 35.0%
TCTGCATTTCGTAGAAATCA+TGG + chr7_4:55400772-55400791 Msa1163930:intron 35.0%
!! GATCTCTAAAATTGTGGTTG+TGG + chr7_4:55400950-55400969 Msa1163930:intron 35.0%
TAAAATTGTGGTTGTGGATC+AGG + chr7_4:55400956-55400975 Msa1163930:intron 35.0%
TTATGATTGTGTATGTGTGC+AGG + chr7_4:55401060-55401079 Msa1163930:intron 35.0%
ACTTCCTATTTGCAGAGAAT+CGG + chr7_4:55401111-55401130 Msa1163930:CDS 35.0%
AAATCCGATTCTCTGCAAAT+AGG - chr7_4:55401118-55401137 None:intergenic 35.0%
CAGAGAATCGGATTTGATTA+TGG + chr7_4:55401123-55401142 Msa1163930:CDS 35.0%
TTTGATTATGGATCAGCTTG+TGG + chr7_4:55401135-55401154 Msa1163930:CDS 35.0%
GTTTCTGCACACTCTAATAT+AGG + chr7_4:55401399-55401418 Msa1163930:intron 35.0%
TGTGATGCTTGATCCAATAA+AGG + chr7_4:55401787-55401806 Msa1163930:intron 35.0%
CTTGATCCAATAAAGGTCTA+TGG + chr7_4:55401794-55401813 Msa1163930:intron 35.0%
GGTCTATGGATACAAACATA+TGG + chr7_4:55401808-55401827 Msa1163930:intron 35.0%
ACATTGTCATCATCTATCAC+AGG - chr7_4:55401964-55401983 None:intergenic 35.0%
GATGATGACAATGTTGTGAT+TGG + chr7_4:55401970-55401989 Msa1163930:CDS 35.0%
! TAATTCGGGTTAATGTTGCA+TGG + chr7_4:55402034-55402053 Msa1163930:three_prime_UTR 35.0%
AGTAAAACAAGCTCGGAATA+GGG - chr7_4:55402168-55402187 None:intergenic 35.0%
!!! GAGCTTGTTTTACTGTCAAT+AGG + chr7_4:55402174-55402193 Msa1163930:three_prime_UTR 35.0%
GTACTTCAATAATAGACGCA+CGG - chr7_4:55402273-55402292 None:intergenic 35.0%
AAACACCGTTTGGACAATGT+GGG - chr7_4:55400079-55400098 None:intergenic 40.0%
GGATTTGAAGAGATCAGTGA+GGG - chr7_4:55400141-55400160 None:intergenic 40.0%
TACTTCTACGGCGATTCAAA+TGG + chr7_4:55400580-55400599 Msa1163930:CDS 40.0%
! ACGGCGATTCAAATGGTTTT+TGG + chr7_4:55400587-55400606 Msa1163930:CDS 40.0%
! TACTGTTGCTATTGCGCTTA+TGG + chr7_4:55400613-55400632 Msa1163930:CDS 40.0%
ATTAGCAGCATACTCATCCT+TGG - chr7_4:55400654-55400673 None:intergenic 40.0%
GGTAAGAGATGTGATGAAGA+AGG + chr7_4:55401081-55401100 Msa1163930:intron 40.0%
AGATGTGATGAAGAAGGATG+AGG + chr7_4:55401087-55401106 Msa1163930:CDS 40.0%
CTGATTGGAACATTTACCGA+TGG + chr7_4:55401211-55401230 Msa1163930:CDS 40.0%
!!! GAGAACACTGGTTTTAACAG+AGG - chr7_4:55401489-55401508 None:intergenic 40.0%
TAGCAGCTATTTGAGAACAC+TGG - chr7_4:55401501-55401520 None:intergenic 40.0%
TCTCAAATAGCTGCTATAGC+AGG + chr7_4:55401505-55401524 Msa1163930:intron 40.0%
CTCAAATAGCTGCTATAGCA+GGG + chr7_4:55401506-55401525 Msa1163930:intron 40.0%
CTCTATAGCGTAGTGAAGTT+TGG + chr7_4:55401602-55401621 Msa1163930:intron 40.0%
TTGACCAGTGTAGTCAATCT+CGG - chr7_4:55401650-55401669 None:intergenic 40.0%
!!! ACCTTTGTTTTTGGGATGTC+AGG + chr7_4:55401854-55401873 Msa1163930:intron 40.0%
TCCTGACATCCCAAAAACAA+AGG - chr7_4:55401858-55401877 None:intergenic 40.0%
AACTATTGGTCCAGATGCTA+TGG + chr7_4:55401885-55401904 Msa1163930:CDS 40.0%
!! AAAAACTGAACTGGTGATGG+AGG - chr7_4:55401940-55401959 None:intergenic 40.0%
ATCACAGGCAAAAACTGAAC+TGG - chr7_4:55401949-55401968 None:intergenic 40.0%
CAGCTGGGTTGTGATTAATT+CGG + chr7_4:55402019-55402038 Msa1163930:exon 40.0%
AGCTGGGTTGTGATTAATTC+GGG + chr7_4:55402020-55402039 Msa1163930:exon 40.0%
CAGCTGGGTTGTGATTAATT+CGG + chr7_4:55402019-55402038 Msa1163930:exon 40.0%
AGCTGGGTTGTGATTAATTC+GGG + chr7_4:55402020-55402039 Msa1163930:exon 40.0%
CAGTAAAACAAGCTCGGAAT+AGG - chr7_4:55402169-55402188 None:intergenic 40.0%
AAACACCGTTTGGACAATGT+GGG - chr7_4:55400079-55400098 None:intergenic 40.0%
GGATTTGAAGAGATCAGTGA+GGG - chr7_4:55400141-55400160 None:intergenic 40.0%
TACTTCTACGGCGATTCAAA+TGG + chr7_4:55400580-55400599 Msa1163930:CDS 40.0%
! ACGGCGATTCAAATGGTTTT+TGG + chr7_4:55400587-55400606 Msa1163930:CDS 40.0%
! TACTGTTGCTATTGCGCTTA+TGG + chr7_4:55400613-55400632 Msa1163930:CDS 40.0%
ATTAGCAGCATACTCATCCT+TGG - chr7_4:55400654-55400673 None:intergenic 40.0%
GGTAAGAGATGTGATGAAGA+AGG + chr7_4:55401081-55401100 Msa1163930:intron 40.0%
AGATGTGATGAAGAAGGATG+AGG + chr7_4:55401087-55401106 Msa1163930:CDS 40.0%
CTGATTGGAACATTTACCGA+TGG + chr7_4:55401211-55401230 Msa1163930:CDS 40.0%
!!! GAGAACACTGGTTTTAACAG+AGG - chr7_4:55401489-55401508 None:intergenic 40.0%
TAGCAGCTATTTGAGAACAC+TGG - chr7_4:55401501-55401520 None:intergenic 40.0%
TCTCAAATAGCTGCTATAGC+AGG + chr7_4:55401505-55401524 Msa1163930:intron 40.0%
CTCAAATAGCTGCTATAGCA+GGG + chr7_4:55401506-55401525 Msa1163930:intron 40.0%
CTCTATAGCGTAGTGAAGTT+TGG + chr7_4:55401602-55401621 Msa1163930:intron 40.0%
TTGACCAGTGTAGTCAATCT+CGG - chr7_4:55401650-55401669 None:intergenic 40.0%
!!! ACCTTTGTTTTTGGGATGTC+AGG + chr7_4:55401854-55401873 Msa1163930:intron 40.0%
TCCTGACATCCCAAAAACAA+AGG - chr7_4:55401858-55401877 None:intergenic 40.0%
AACTATTGGTCCAGATGCTA+TGG + chr7_4:55401885-55401904 Msa1163930:CDS 40.0%
!! AAAAACTGAACTGGTGATGG+AGG - chr7_4:55401940-55401959 None:intergenic 40.0%
ATCACAGGCAAAAACTGAAC+TGG - chr7_4:55401949-55401968 None:intergenic 40.0%
CAGCTGGGTTGTGATTAATT+CGG + chr7_4:55402019-55402038 Msa1163930:exon 40.0%
AGCTGGGTTGTGATTAATTC+GGG + chr7_4:55402020-55402039 Msa1163930:exon 40.0%
CAGCTGGGTTGTGATTAATT+CGG + chr7_4:55402019-55402038 Msa1163930:exon 40.0%
AGCTGGGTTGTGATTAATTC+GGG + chr7_4:55402020-55402039 Msa1163930:exon 40.0%
CAGTAAAACAAGCTCGGAAT+AGG - chr7_4:55402169-55402188 None:intergenic 40.0%
TCTCTCCCACATTGTCCAAA+CGG + chr7_4:55400071-55400090 Msa1163930:CDS 45.0%
GAAACACCGTTTGGACAATG+TGG - chr7_4:55400080-55400099 None:intergenic 45.0%
TGTTTGGGAGAAACACCGTT+TGG - chr7_4:55400089-55400108 None:intergenic 45.0%
TTTGAAGAGATCAGTGAGGG+TGG - chr7_4:55400138-55400157 None:intergenic 45.0%
GGGATTTGAAGAGATCAGTG+AGG - chr7_4:55400142-55400161 None:intergenic 45.0%
TGAAGGATAGGGTTTGGGAA+TGG - chr7_4:55400202-55400221 None:intergenic 45.0%
! GATTTTGTGAGCGACAAAGC+CGG - chr7_4:55400279-55400298 None:intergenic 45.0%
AAGAACGAGTACATCGCGAT+CGG - chr7_4:55400384-55400403 None:intergenic 45.0%
CTCGTTCTTCTCAGCAAATC+CGG + chr7_4:55400395-55400414 Msa1163930:CDS 45.0%
ATCGCTGTTACGTCTGTTGA+AGG + chr7_4:55400476-55400495 Msa1163930:CDS 45.0%
TCGCTGTTACGTCTGTTGAA+GGG + chr7_4:55400477-55400496 Msa1163930:CDS 45.0%
GGACATAACTCTCTCTCCAA+CGG - chr7_4:55400542-55400561 None:intergenic 45.0%
! ATGTCCTTTTAACCTTGCGC+CGG + chr7_4:55400556-55400575 Msa1163930:CDS 45.0%
TGAATCGCCGTAGAAGTAAC+CGG - chr7_4:55400578-55400597 None:intergenic 45.0%
! TGTTGCTATTGCGCTTATGG+CGG + chr7_4:55400616-55400635 Msa1163930:CDS 45.0%
AATCATCCCGCTGGGAAAAT+CGG + chr7_4:55400671-55400690 Msa1163930:CDS 45.0%
CTTGTGGAGCTGACAAGTAA+AGG + chr7_4:55401151-55401170 Msa1163930:CDS 45.0%
GAGCTGACAAGTAAAGGATG+TGG + chr7_4:55401157-55401176 Msa1163930:CDS 45.0%
GATGACAATCGTCGTCTGAT+TGG + chr7_4:55401196-55401215 Msa1163930:CDS 45.0%
!! AGCCATTTTCAAGCTGACTG+TGG + chr7_4:55401267-55401286 Msa1163930:CDS 45.0%
!! GCCATTTTCAAGCTGACTGT+GGG + chr7_4:55401268-55401287 Msa1163930:CDS 45.0%
ACCCACAGTCAGCTTGAAAA+TGG - chr7_4:55401272-55401291 None:intergenic 45.0%
CTGTGGGTAAAATGTGCAAC+AGG + chr7_4:55401284-55401303 Msa1163930:CDS 45.0%
CAATCCGAGATTGACTACAC+TGG + chr7_4:55401643-55401662 Msa1163930:intron 45.0%
GTCAGGAATCCGAGAACTAT+TGG + chr7_4:55401871-55401890 Msa1163930:intron 45.0%
GCATCTGGACCAATAGTTCT+CGG - chr7_4:55401883-55401902 None:intergenic 45.0%
AGTGGATGCCATGAAGAAGA+TGG + chr7_4:55401909-55401928 Msa1163930:CDS 45.0%
AGGTGCTTCCATCTTCTTCA+TGG - chr7_4:55401920-55401939 None:intergenic 45.0%
GGCAAAAACTGAACTGGTGA+TGG - chr7_4:55401943-55401962 None:intergenic 45.0%
ATTGGGATTGTCACCTTGCA+TGG + chr7_4:55401988-55402007 Msa1163930:CDS 45.0%
GATTGTCACCTTGCATGGTT+TGG + chr7_4:55401993-55402012 Msa1163930:CDS 45.0%
AGCTGAAACCAAACCATGCA+AGG - chr7_4:55402004-55402023 None:intergenic 45.0%
!! TTGCATGGTTTGGTTTCAGC+TGG + chr7_4:55402003-55402022 Msa1163930:CDS 45.0%
!! TGCATGGTTTGGTTTCAGCT+GGG + chr7_4:55402004-55402023 Msa1163930:CDS 45.0%
CGGGTTAATGTTGCATGGTT+TGG + chr7_4:55402039-55402058 Msa1163930:three_prime_UTR 45.0%
!! TTGCATGGTTTGGTTTCAGC+TGG + chr7_4:55402003-55402022 Msa1163930:CDS 45.0%
!! TGCATGGTTTGGTTTCAGCT+GGG + chr7_4:55402004-55402023 Msa1163930:CDS 45.0%
AAAACAAGCTCGGAATAGGG+CGG - chr7_4:55402165-55402184 None:intergenic 45.0%
TCTCTCCCACATTGTCCAAA+CGG + chr7_4:55400071-55400090 Msa1163930:CDS 45.0%
GAAACACCGTTTGGACAATG+TGG - chr7_4:55400080-55400099 None:intergenic 45.0%
TGTTTGGGAGAAACACCGTT+TGG - chr7_4:55400089-55400108 None:intergenic 45.0%
TTTGAAGAGATCAGTGAGGG+TGG - chr7_4:55400138-55400157 None:intergenic 45.0%
GGGATTTGAAGAGATCAGTG+AGG - chr7_4:55400142-55400161 None:intergenic 45.0%
TGAAGGATAGGGTTTGGGAA+TGG - chr7_4:55400202-55400221 None:intergenic 45.0%
! GATTTTGTGAGCGACAAAGC+CGG - chr7_4:55400279-55400298 None:intergenic 45.0%
AAGAACGAGTACATCGCGAT+CGG - chr7_4:55400384-55400403 None:intergenic 45.0%
CTCGTTCTTCTCAGCAAATC+CGG + chr7_4:55400395-55400414 Msa1163930:CDS 45.0%
ATCGCTGTTACGTCTGTTGA+AGG + chr7_4:55400476-55400495 Msa1163930:CDS 45.0%
TCGCTGTTACGTCTGTTGAA+GGG + chr7_4:55400477-55400496 Msa1163930:CDS 45.0%
GGACATAACTCTCTCTCCAA+CGG - chr7_4:55400542-55400561 None:intergenic 45.0%
! ATGTCCTTTTAACCTTGCGC+CGG + chr7_4:55400556-55400575 Msa1163930:CDS 45.0%
TGAATCGCCGTAGAAGTAAC+CGG - chr7_4:55400578-55400597 None:intergenic 45.0%
! TGTTGCTATTGCGCTTATGG+CGG + chr7_4:55400616-55400635 Msa1163930:CDS 45.0%
AATCATCCCGCTGGGAAAAT+CGG + chr7_4:55400671-55400690 Msa1163930:CDS 45.0%
CTTGTGGAGCTGACAAGTAA+AGG + chr7_4:55401151-55401170 Msa1163930:CDS 45.0%
GAGCTGACAAGTAAAGGATG+TGG + chr7_4:55401157-55401176 Msa1163930:CDS 45.0%
GATGACAATCGTCGTCTGAT+TGG + chr7_4:55401196-55401215 Msa1163930:CDS 45.0%
!! AGCCATTTTCAAGCTGACTG+TGG + chr7_4:55401267-55401286 Msa1163930:CDS 45.0%
!! GCCATTTTCAAGCTGACTGT+GGG + chr7_4:55401268-55401287 Msa1163930:CDS 45.0%
ACCCACAGTCAGCTTGAAAA+TGG - chr7_4:55401272-55401291 None:intergenic 45.0%
CTGTGGGTAAAATGTGCAAC+AGG + chr7_4:55401284-55401303 Msa1163930:CDS 45.0%
CAATCCGAGATTGACTACAC+TGG + chr7_4:55401643-55401662 Msa1163930:intron 45.0%
GTCAGGAATCCGAGAACTAT+TGG + chr7_4:55401871-55401890 Msa1163930:intron 45.0%
GCATCTGGACCAATAGTTCT+CGG - chr7_4:55401883-55401902 None:intergenic 45.0%
AGTGGATGCCATGAAGAAGA+TGG + chr7_4:55401909-55401928 Msa1163930:CDS 45.0%
AGGTGCTTCCATCTTCTTCA+TGG - chr7_4:55401920-55401939 None:intergenic 45.0%
GGCAAAAACTGAACTGGTGA+TGG - chr7_4:55401943-55401962 None:intergenic 45.0%
ATTGGGATTGTCACCTTGCA+TGG + chr7_4:55401988-55402007 Msa1163930:CDS 45.0%
GATTGTCACCTTGCATGGTT+TGG + chr7_4:55401993-55402012 Msa1163930:CDS 45.0%
AGCTGAAACCAAACCATGCA+AGG - chr7_4:55402004-55402023 None:intergenic 45.0%
!! TTGCATGGTTTGGTTTCAGC+TGG + chr7_4:55402003-55402022 Msa1163930:CDS 45.0%
!! TGCATGGTTTGGTTTCAGCT+GGG + chr7_4:55402004-55402023 Msa1163930:CDS 45.0%
CGGGTTAATGTTGCATGGTT+TGG + chr7_4:55402039-55402058 Msa1163930:three_prime_UTR 45.0%
!! TTGCATGGTTTGGTTTCAGC+TGG + chr7_4:55402003-55402022 Msa1163930:CDS 45.0%
!! TGCATGGTTTGGTTTCAGCT+GGG + chr7_4:55402004-55402023 Msa1163930:CDS 45.0%
AAAACAAGCTCGGAATAGGG+CGG - chr7_4:55402165-55402184 None:intergenic 45.0%
!! TTAATTAACTAATATATAAA+AGG - chr7_4:55400855-55400874 None:intergenic 5.0%
!! TTATATATTAGTTAATTAAT+CGG + chr7_4:55400856-55400875 Msa1163930:intron 5.0%
!! TTAATTAACTAATATATAAA+AGG - chr7_4:55400855-55400874 None:intergenic 5.0%
!! TTATATATTAGTTAATTAAT+CGG + chr7_4:55400856-55400875 Msa1163930:intron 5.0%
TCACAAACACTCGTCTCCCT+CGG + chr7_4:55400299-55400318 Msa1163930:CDS 50.0%
TGTTGAAGGGAACGCGCTTT+CGG + chr7_4:55400490-55400509 Msa1163930:CDS 50.0%
TATGACCGTGCATTTGCCGT+TGG + chr7_4:55400523-55400542 Msa1163930:CDS 50.0%
TCTCTCCAACGGCAAATGCA+CGG - chr7_4:55400531-55400550 None:intergenic 50.0%
GTAACCGGCGCAAGGTTAAA+AGG - chr7_4:55400563-55400582 None:intergenic 50.0%
TATGCTGCTAATCATCCCGC+TGG + chr7_4:55400662-55400681 Msa1163930:CDS 50.0%
ATGCTGCTAATCATCCCGCT+GGG + chr7_4:55400663-55400682 Msa1163930:CDS 50.0%
CGGCAAGAGCCTCATCTTTA+AGG + chr7_4:55400691-55400710 Msa1163930:CDS 50.0%
TGTACGACGCAGATCACCAT+CGG - chr7_4:55401230-55401249 None:intergenic 50.0%
CGTCGTACACTCAAAGCTAG+TGG + chr7_4:55401241-55401260 Msa1163930:CDS 50.0%
!! TGCTATGCCTGGCTTTGTAC+TGG + chr7_4:55402243-55402262 Msa1163930:three_prime_UTR 50.0%
TCACAAACACTCGTCTCCCT+CGG + chr7_4:55400299-55400318 Msa1163930:CDS 50.0%
TGTTGAAGGGAACGCGCTTT+CGG + chr7_4:55400490-55400509 Msa1163930:CDS 50.0%
TATGACCGTGCATTTGCCGT+TGG + chr7_4:55400523-55400542 Msa1163930:CDS 50.0%
TCTCTCCAACGGCAAATGCA+CGG - chr7_4:55400531-55400550 None:intergenic 50.0%
GTAACCGGCGCAAGGTTAAA+AGG - chr7_4:55400563-55400582 None:intergenic 50.0%
TATGCTGCTAATCATCCCGC+TGG + chr7_4:55400662-55400681 Msa1163930:CDS 50.0%
ATGCTGCTAATCATCCCGCT+GGG + chr7_4:55400663-55400682 Msa1163930:CDS 50.0%
CGGCAAGAGCCTCATCTTTA+AGG + chr7_4:55400691-55400710 Msa1163930:CDS 50.0%
TGTACGACGCAGATCACCAT+CGG - chr7_4:55401230-55401249 None:intergenic 50.0%
CGTCGTACACTCAAAGCTAG+TGG + chr7_4:55401241-55401260 Msa1163930:CDS 50.0%
!! TGCTATGCCTGGCTTTGTAC+TGG + chr7_4:55402243-55402262 Msa1163930:three_prime_UTR 50.0%
GCGGGTGAAGGATAGGGTTT+GGG - chr7_4:55400207-55400226 None:intergenic 55.0%
! AAGAGCGCGGGTGAAGGATA+GGG - chr7_4:55400213-55400232 None:intergenic 55.0%
! TTCACCGGCGTCGGAAAATC+CGG + chr7_4:55400257-55400276 Msa1163930:CDS 55.0%
! AAAGCCGGATTTTCCGACGC+CGG - chr7_4:55400264-55400283 None:intergenic 55.0%
! AAAGGAGGAGCGGATTCCGA+GGG - chr7_4:55400318-55400337 None:intergenic 55.0%
GATGCTCTTCACGGCGACAT+CGG + chr7_4:55400350-55400369 Msa1163930:CDS 55.0%
GTTCCCTGTGCTAGAGCGAA+AGG + chr7_4:55400443-55400462 Msa1163930:CDS 55.0%
!! CCTTGCGCCGGTTACTTCTA+CGG + chr7_4:55400568-55400587 Msa1163930:CDS 55.0%
CTATTGCGCTTATGGCGGCA+CGG + chr7_4:55400621-55400640 Msa1163930:CDS 55.0%
!!! CTCTTGCCGATTTTCCCAGC+GGG - chr7_4:55400680-55400699 None:intergenic 55.0%
!!! GCTCTTGCCGATTTTCCCAG+CGG - chr7_4:55400681-55400700 None:intergenic 55.0%
TGGTCCAGATGCTATGGCAG+TGG + chr7_4:55401891-55401910 Msa1163930:CDS 55.0%
GCATCCACTGCCATAGCATC+TGG - chr7_4:55401898-55401917 None:intergenic 55.0%
CGGATGACCAGTACAAAGCC+AGG - chr7_4:55402253-55402272 None:intergenic 55.0%
GCGGGTGAAGGATAGGGTTT+GGG - chr7_4:55400207-55400226 None:intergenic 55.0%
! AAGAGCGCGGGTGAAGGATA+GGG - chr7_4:55400213-55400232 None:intergenic 55.0%
! TTCACCGGCGTCGGAAAATC+CGG + chr7_4:55400257-55400276 Msa1163930:CDS 55.0%
! AAAGCCGGATTTTCCGACGC+CGG - chr7_4:55400264-55400283 None:intergenic 55.0%
! AAAGGAGGAGCGGATTCCGA+GGG - chr7_4:55400318-55400337 None:intergenic 55.0%
GATGCTCTTCACGGCGACAT+CGG + chr7_4:55400350-55400369 Msa1163930:CDS 55.0%
GTTCCCTGTGCTAGAGCGAA+AGG + chr7_4:55400443-55400462 Msa1163930:CDS 55.0%
!! CCTTGCGCCGGTTACTTCTA+CGG + chr7_4:55400568-55400587 Msa1163930:CDS 55.0%
CTATTGCGCTTATGGCGGCA+CGG + chr7_4:55400621-55400640 Msa1163930:CDS 55.0%
!!! CTCTTGCCGATTTTCCCAGC+GGG - chr7_4:55400680-55400699 None:intergenic 55.0%
!!! GCTCTTGCCGATTTTCCCAG+CGG - chr7_4:55400681-55400700 None:intergenic 55.0%
TGGTCCAGATGCTATGGCAG+TGG + chr7_4:55401891-55401910 Msa1163930:CDS 55.0%
GCATCCACTGCCATAGCATC+TGG - chr7_4:55401898-55401917 None:intergenic 55.0%
CGGATGACCAGTACAAAGCC+AGG - chr7_4:55402253-55402272 None:intergenic 55.0%
CGCGGGTGAAGGATAGGGTT+TGG - chr7_4:55400208-55400227 None:intergenic 60.0%
! GAAGAGCGCGGGTGAAGGAT+AGG - chr7_4:55400214-55400233 None:intergenic 60.0%
! GTTGAGAAGAGCGCGGGTGA+AGG - chr7_4:55400219-55400238 None:intergenic 60.0%
! GGTGGTGTTGAGAAGAGCGC+GGG - chr7_4:55400225-55400244 None:intergenic 60.0%
! CGGTGGTGTTGAGAAGAGCG+CGG - chr7_4:55400226-55400245 None:intergenic 60.0%
CGCGCTCTTCTCAACACCAC+CGG + chr7_4:55400224-55400243 Msa1163930:CDS 60.0%
ACCGGCACCGTCTTCTTCAC+CGG + chr7_4:55400242-55400261 Msa1163930:CDS 60.0%
ACCGTCTTCTTCACCGGCGT+CGG + chr7_4:55400248-55400267 Msa1163930:CDS 60.0%
TCCGACGCCGGTGAAGAAGA+CGG - chr7_4:55400252-55400271 None:intergenic 60.0%
! GAAAGGAGGAGCGGATTCCG+AGG - chr7_4:55400319-55400338 None:intergenic 60.0%
ATCGACGGGGGAGAGAAAGG+AGG - chr7_4:55400333-55400352 None:intergenic 60.0%
!! AGCATCGACGGGGGAGAGAA+AGG - chr7_4:55400336-55400355 None:intergenic 60.0%
TCCCCCGTCGATGCTCTTCA+CGG + chr7_4:55400341-55400360 Msa1163930:CDS 60.0%
!! TCGCCGTGAAGAGCATCGAC+GGG - chr7_4:55400347-55400366 None:intergenic 60.0%
!! GTCGCCGTGAAGAGCATCGA+CGG - chr7_4:55400348-55400367 None:intergenic 60.0%
CGAGTACATCGCGATCGGAG+AGG - chr7_4:55400379-55400398 None:intergenic 60.0%
TCTCAGCAAATCCGGCGCCA+CGG + chr7_4:55400403-55400422 Msa1163930:CDS 60.0%
GCGCCTTTCGCTCTAGCACA+GGG - chr7_4:55400449-55400468 None:intergenic 60.0%
AGCGCCTTTCGCTCTAGCAC+AGG - chr7_4:55400450-55400469 None:intergenic 60.0%
TGAAGGGAACGCGCTTTCGG+CGG + chr7_4:55400493-55400512 Msa1163930:CDS 60.0%
CCGTAGAAGTAACCGGCGCA+AGG - chr7_4:55400571-55400590 None:intergenic 60.0%
GGCGGCACGGAATCTTACCA+AGG + chr7_4:55400634-55400653 Msa1163930:CDS 60.0%
CGCGGGTGAAGGATAGGGTT+TGG - chr7_4:55400208-55400227 None:intergenic 60.0%
! GAAGAGCGCGGGTGAAGGAT+AGG - chr7_4:55400214-55400233 None:intergenic 60.0%
! GTTGAGAAGAGCGCGGGTGA+AGG - chr7_4:55400219-55400238 None:intergenic 60.0%
! GGTGGTGTTGAGAAGAGCGC+GGG - chr7_4:55400225-55400244 None:intergenic 60.0%
! CGGTGGTGTTGAGAAGAGCG+CGG - chr7_4:55400226-55400245 None:intergenic 60.0%
CGCGCTCTTCTCAACACCAC+CGG + chr7_4:55400224-55400243 Msa1163930:CDS 60.0%
ACCGGCACCGTCTTCTTCAC+CGG + chr7_4:55400242-55400261 Msa1163930:CDS 60.0%
ACCGTCTTCTTCACCGGCGT+CGG + chr7_4:55400248-55400267 Msa1163930:CDS 60.0%
TCCGACGCCGGTGAAGAAGA+CGG - chr7_4:55400252-55400271 None:intergenic 60.0%
! GAAAGGAGGAGCGGATTCCG+AGG - chr7_4:55400319-55400338 None:intergenic 60.0%
ATCGACGGGGGAGAGAAAGG+AGG - chr7_4:55400333-55400352 None:intergenic 60.0%
!! AGCATCGACGGGGGAGAGAA+AGG - chr7_4:55400336-55400355 None:intergenic 60.0%
TCCCCCGTCGATGCTCTTCA+CGG + chr7_4:55400341-55400360 Msa1163930:CDS 60.0%
!! TCGCCGTGAAGAGCATCGAC+GGG - chr7_4:55400347-55400366 None:intergenic 60.0%
!! GTCGCCGTGAAGAGCATCGA+CGG - chr7_4:55400348-55400367 None:intergenic 60.0%
CGAGTACATCGCGATCGGAG+AGG - chr7_4:55400379-55400398 None:intergenic 60.0%
TCTCAGCAAATCCGGCGCCA+CGG + chr7_4:55400403-55400422 Msa1163930:CDS 60.0%
GCGCCTTTCGCTCTAGCACA+GGG - chr7_4:55400449-55400468 None:intergenic 60.0%
AGCGCCTTTCGCTCTAGCAC+AGG - chr7_4:55400450-55400469 None:intergenic 60.0%
TGAAGGGAACGCGCTTTCGG+CGG + chr7_4:55400493-55400512 Msa1163930:CDS 60.0%
CCGTAGAAGTAACCGGCGCA+AGG - chr7_4:55400571-55400590 None:intergenic 60.0%
GGCGGCACGGAATCTTACCA+AGG + chr7_4:55400634-55400653 Msa1163930:CDS 60.0%
! GGTGAAGAAGACGGTGCCGG+TGG - chr7_4:55400243-55400262 None:intergenic 65.0%
GCCGGTGAAGAAGACGGTGC+CGG - chr7_4:55400246-55400265 None:intergenic 65.0%
CGGGGGAGAGAAAGGAGGAG+CGG - chr7_4:55400328-55400347 None:intergenic 65.0%
!! GCCGTGAAGAGCATCGACGG+GGG - chr7_4:55400345-55400364 None:intergenic 65.0%
!! CGCCGTGAAGAGCATCGACG+GGG - chr7_4:55400346-55400365 None:intergenic 65.0%
AAGCCGCAGAAGCTCCTCCG+TGG - chr7_4:55400423-55400442 None:intergenic 65.0%
! GGTGAAGAAGACGGTGCCGG+TGG - chr7_4:55400243-55400262 None:intergenic 65.0%
GCCGGTGAAGAAGACGGTGC+CGG - chr7_4:55400246-55400265 None:intergenic 65.0%
CGGGGGAGAGAAAGGAGGAG+CGG - chr7_4:55400328-55400347 None:intergenic 65.0%
!! GCCGTGAAGAGCATCGACGG+GGG - chr7_4:55400345-55400364 None:intergenic 65.0%
!! CGCCGTGAAGAGCATCGACG+GGG - chr7_4:55400346-55400365 None:intergenic 65.0%
AAGCCGCAGAAGCTCCTCCG+TGG - chr7_4:55400423-55400442 None:intergenic 65.0%
CAGCAAATCCGGCGCCACGG+AGG + chr7_4:55400406-55400425 Msa1163930:CDS 70.0%
CAGAAGCTCCTCCGTGGCGC+CGG - chr7_4:55400417-55400436 None:intergenic 70.0%
GCGCCACGGAGGAGCTTCTG+CGG + chr7_4:55400417-55400436 Msa1163930:CDS 70.0%
CAGCAAATCCGGCGCCACGG+AGG + chr7_4:55400406-55400425 Msa1163930:CDS 70.0%
CAGAAGCTCCTCCGTGGCGC+CGG - chr7_4:55400417-55400436 None:intergenic 70.0%
GCGCCACGGAGGAGCTTCTG+CGG + chr7_4:55400417-55400436 Msa1163930:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55399964 55402293 55399964 ID=Msa1163930;Name=Msa1163930
chr7_4 mRNA 55399964 55402293 55399964 ID=Msa1163930-mRNA-1;Parent=Msa1163930;Name=Msa1163930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=101|1|1|1|1|1|3|261|342
chr7_4 exon 55399964 55400712 55399964 ID=Msa1163930-mRNA-1:exon:16184;Parent=Msa1163930-mRNA-1
chr7_4 exon 55401082 55401305 55401082 ID=Msa1163930-mRNA-1:exon:16185;Parent=Msa1163930-mRNA-1
chr7_4 exon 55401876 55402293 55401876 ID=Msa1163930-mRNA-1:exon:16186;Parent=Msa1163930-mRNA-1
chr7_4 five_prime_UTR 55399964 55400064 55399964 ID=Msa1163930-mRNA-1:five_prime_utr;Parent=Msa1163930-mRNA-1
chr7_4 CDS 55400065 55400712 55400065 ID=Msa1163930-mRNA-1:cds;Parent=Msa1163930-mRNA-1
chr7_4 CDS 55401082 55401305 55401082 ID=Msa1163930-mRNA-1:cds;Parent=Msa1163930-mRNA-1
chr7_4 CDS 55401876 55402032 55401876 ID=Msa1163930-mRNA-1:cds;Parent=Msa1163930-mRNA-1
chr7_4 three_prime_UTR 55402033 55402293 55402033 ID=Msa1163930-mRNA-1:three_prime_utr;Parent=Msa1163930-mRNA-1
Gene Sequence

>Msa1163930

ATGGGTTCTCTCCCACATTGTCCAAACGGTGTTTCTCCCAAACAAAGCCTTAACGATCTAATTGACGAAACCACCCTCACTGATCTCTTCAAATCCCAACAAAACCATCTCAATTTCTTCTTCGATCGCATCGACCATTCCCAAACCCTATCCTTCACCCGCGCTCTTCTCAACACCACCGGCACCGTCTTCTTCACCGGCGTCGGAAAATCCGGCTTTGTCGCTCACAAAATCTCACAAACACTCGTCTCCCTCGGAATCCGCTCCTCCTTTCTCTCCCCCGTCGATGCTCTTCACGGCGACATCGGAATCCTCTCCGATCGCGATGTACTCGTTCTTCTCAGCAAATCCGGCGCCACGGAGGAGCTTCTGCGGCTTGTTCCCTGTGCTAGAGCGAAAGGCGCTCGTTTAATCGCTGTTACGTCTGTTGAAGGGAACGCGCTTTCGGCGGTGTGTGATATGACCGTGCATTTGCCGTTGGAGAGAGAGTTATGTCCTTTTAACCTTGCGCCGGTTACTTCTACGGCGATTCAAATGGTTTTTGGTGATACTGTTGCTATTGCGCTTATGGCGGCACGGAATCTTACCAAGGATGAGTATGCTGCTAATCATCCCGCTGGGAAAATCGGCAAGAGCCTCATCTTTAAGGTAAGAGATGTGATGAAGAAGGATGAGGAACTTCCTATTTGCAGAGAATCGGATTTGATTATGGATCAGCTTGTGGAGCTGACAAGTAAAGGATGTGGATGTTTGCTTGTTATAGATGACAATCGTCGTCTGATTGGAACATTTACCGATGGTGATCTGCGTCGTACACTCAAAGCTAGTGGTGAAGCCATTTTCAAGCTGACTGTGGGTAAAATGTGCAACAGGAATCCGAGAACTATTGGTCCAGATGCTATGGCAGTGGATGCCATGAAGAAGATGGAAGCACCTCCATCACCAGTTCAGTTTTTGCCTGTGATAGATGATGACAATGTTGTGATTGGGATTGTCACCTTGCATGGTTTGGTTTCAGCTGGGTTGTGA
Protein sequence

>Msa1163930

MGSLPHCPNGVSPKQSLNDLIDETTLTDLFKSQQNHLNFFFDRIDHSQTLSFTRALLNTTGTVFFTGVGKSGFVAHKISQTLVSLGIRSSFLSPVDALHGDIGILSDRDVLVLLSKSGATEELLRLVPCARAKGARLIAVTSVEGNALSAVCDMTVHLPLERELCPFNLAPVTSTAIQMVFGDTVAIALMAARNLTKDEYAANHPAGKIGKSLIFKVRDVMKKDEELPICRESDLIMDQLVELTSKGCGCLLVIDDNRRLIGTFTDGDLRRTLKASGEAIFKLTVGKMCNRNPRTIGPDAMAVDAMKKMEAPPSPVQFLPVIDDDNVVIGIVTLHGLVSAGL*