AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163940 MtrunA17_Chr7g0261401 93.405 834 50 2 79 911 1 830 0.0 1607
Msa1163940 MtrunA17_Chr1g0189211 45.923 699 336 9 81 758 20 697 0.0 629
Msa1163940 MtrunA17_Chr2g0303101 44.098 610 319 10 177 784 34 623 2.17e-151 472
Msa1163940 MtrunA17_Chr8g0380981 41.840 576 320 6 177 752 25 585 5.90e-145 457
Msa1163940 MtrunA17_Chr5g0397501 33.176 425 232 9 317 731 301 683 5.26e-55 207
Msa1163940 MtrunA17_Chr5g0397501 44.186 86 42 2 195 280 28 107 1.71e-12 72.0
Msa1163940 MtrunA17_Chr3g0116441 28.401 419 212 9 195 602 18 359 6.00e-37 151
Msa1163940 MtrunA17_Chr5g0410721 28.280 343 227 9 419 753 237 568 4.93e-35 144
Msa1163940 MtrunA17_Chr1g0164731 25.458 546 302 14 191 724 41 493 4.31e-34 139
Msa1163940 MtrunA17_Chr1g0199511 34.946 186 109 2 419 598 295 474 1.36e-27 120
Msa1163940 MtrunA17_Chr1g0164761 31.359 287 173 10 447 724 166 437 9.19e-27 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163940 AT1G08620.2 43.983 723 364 11 83 781 19 724 7.61e-180 553
Msa1163940 AT1G08620.4 43.983 723 364 11 83 781 19 724 7.61e-180 553
Msa1163940 AT1G08620.1 43.983 723 364 11 83 781 19 724 7.61e-180 553
Msa1163940 AT1G08620.3 43.983 723 364 11 83 781 33 738 1.18e-179 553
Msa1163940 AT2G38950.1 38.889 702 351 14 74 769 10 639 1.63e-150 461
Msa1163940 AT4G20400.1 42.655 565 308 5 177 741 38 586 1.97e-148 464
Msa1163940 AT1G30810.3 41.519 619 323 11 135 747 7 592 2.66e-146 454
Msa1163940 AT1G30810.2 41.519 619 323 11 135 747 7 592 2.66e-146 454
Msa1163940 AT1G30810.1 41.519 619 323 11 135 747 7 592 2.66e-146 454
Msa1163940 AT2G34880.1 40.902 599 312 14 151 740 15 580 1.09e-136 428
Msa1163940 AT4G20400.2 41.558 539 299 4 203 741 7 529 3.40e-136 430
Msa1163940 AT1G63490.1 33.573 417 240 9 317 731 45 426 8.75e-58 216
Msa1163940 AT1G63490.2 33.573 417 240 9 317 731 298 679 1.06e-57 216
Msa1163940 AT1G63490.2 41.860 86 44 2 195 280 31 110 1.13e-11 69.7
Msa1163940 AT1G63490.4 33.573 417 240 9 317 731 298 679 1.10e-57 216
Msa1163940 AT1G63490.4 41.860 86 44 2 195 280 31 110 1.14e-11 69.7
Msa1163940 AT5G46910.2 27.580 562 301 18 190 744 98 560 3.71e-43 167
Msa1163940 AT5G46910.1 27.758 562 300 19 190 744 98 560 9.19e-43 168
Msa1163940 AT5G04240.1 36.464 181 113 2 419 598 263 442 3.74e-30 129
Msa1163940 AT1G63490.3 33.040 227 139 4 505 731 7 220 8.55e-29 124
Msa1163940 AT3G48430.1 37.569 181 109 2 420 598 205 383 4.29e-28 122

Find 236 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAACAATTACTGCATTT+TGG 0.161845 7_4:+55407670 None:intergenic
GAAAATTTCTGTGCAGCTTC+AGG 0.197788 7_4:+55406500 None:intergenic
AACTAAGTGCAGTCTATAAA+TGG 0.202723 7_4:-55404318 Msa1163940:CDS
TGTTTCTCCACCAAAGAATT+TGG 0.204908 7_4:+55404133 None:intergenic
ATGTTAGAAACAATTTATTT+TGG 0.207841 7_4:-55403581 Msa1163940:three_prime_UTR
TAAGGATAAGAATAAGATTA+TGG 0.215631 7_4:-55406894 Msa1163940:CDS
ACTTCACTGCCAGTTGTAAA+AGG 0.230547 7_4:-55404522 Msa1163940:CDS
TTGTTTCTAACATGCATATT+AGG 0.230884 7_4:+55403591 None:intergenic
AAAAGTACTTCAACTAATAA+TGG 0.231367 7_4:-55407019 Msa1163940:CDS
GGAACACTTGCCGCGATTTC+CGG 0.234969 7_4:+55409885 None:intergenic
GAAGAAACTTCAGAAACTTT+TGG 0.238244 7_4:+55403863 None:intergenic
CTTCCAAAAGGGACCAAATA+TGG 0.238729 7_4:-55407697 Msa1163940:CDS
CTGTTGACTTTGAAACAATT+TGG 0.245122 7_4:-55406242 Msa1163940:CDS
CTCATTATATTACATGCATT+TGG 0.245461 7_4:-55406304 Msa1163940:CDS
GAGTTTGTTCTTGTCTTTCC+TGG 0.259269 7_4:-55405167 Msa1163940:CDS
CATCCATATTTGGTCCCTTT+TGG 0.264250 7_4:+55407694 None:intergenic
CCTCTTGAGTGGTTGCTTCA+TGG 0.276894 7_4:-55405086 Msa1163940:CDS
AATGCTTGTTGCAGCAGATT+TGG 0.282959 7_4:+55403970 None:intergenic
GCATCCTCCTATGACTAAAT+TGG 0.292585 7_4:-55408880 Msa1163940:intron
CAAGATCCCATTTCTTTGAT+AGG 0.293387 7_4:+55404908 None:intergenic
TCTTCTGTTGGACGGAAAAT+AGG 0.293809 7_4:+55407508 None:intergenic
TCCCCAATTGCCTTGCTATC+AGG 0.296863 7_4:+55403917 None:intergenic
CTGTGAGCCAATTGTATTCC+AGG 0.303055 7_4:-55403508 Msa1163940:three_prime_UTR
AAAATTACCAATTTAGTCAT+AGG 0.309535 7_4:+55408873 None:intergenic
AGTTAAACCAAGATCTTCTT+TGG 0.311186 7_4:+55404294 None:intergenic
TTTGATTTCTGGGAGGCAAC+TGG 0.312468 7_4:+55404265 None:intergenic
TATCCTGAATATTTAAAATC+TGG 0.314812 7_4:-55406578 Msa1163940:CDS
GGATGCAAGAAGAGAAGTTC+TGG 0.317535 7_4:-55407539 Msa1163940:CDS
TTCATACGACAAGCTGTTAC+TGG 0.325874 7_4:-55405015 Msa1163940:CDS
ATGCTTGTTGCAGCAGATTT+GGG 0.334186 7_4:+55403971 None:intergenic
ACCAGATTATCATGCATATC+TGG 0.335186 7_4:+55406177 None:intergenic
TTTCCTGGAACATATCATTC+AGG 0.336680 7_4:-55405152 Msa1163940:CDS
CTTTACTACAAGAGAACATT+TGG 0.337778 7_4:-55403814 Msa1163940:CDS
AAGAATAAGATTATGGGTTC+TGG 0.338061 7_4:-55406887 Msa1163940:CDS
AAATTTGATGGGCCTCTTCA+TGG 0.342766 7_4:+55409969 None:intergenic
GCAGGCAACACCAAATTCTT+TGG 0.343316 7_4:-55404143 Msa1163940:CDS
CGTTCCGAAGCAGGACCTTA+TGG 0.344741 7_4:-55407268 Msa1163940:CDS
AAAGATGCCTATCAAAGAAA+TGG 0.345096 7_4:-55404915 Msa1163940:CDS
AACTATTTACACATTCTAAC+GGG 0.345933 7_4:+55403468 None:intergenic
GGTCAAAGCTAAAGAGAAAA+TGG 0.347194 7_4:-55403999 Msa1163940:CDS
AACAGCTTTGTTCTTGTCCT+TGG 0.347232 7_4:-55404411 Msa1163940:CDS
TTCTCTTCTGTTCACTATAT+AGG 0.352412 7_4:+55405048 None:intergenic
TGTAATATAATGAGTATAAT+TGG 0.352936 7_4:+55406313 None:intergenic
CTGCTGTTGTCTAAATTTGA+TGG 0.359671 7_4:+55409957 None:intergenic
GATCCAGTACTTCAACTATA+AGG 0.361511 7_4:-55406912 Msa1163940:CDS
GGATCAGAAATCGCTGGAAT+TGG 0.361921 7_4:+55406617 None:intergenic
AGTGACAAAGTCTGCCCTTA+AGG 0.363924 7_4:-55409836 Msa1163940:CDS
TCATTATATTACATGCATTT+GGG 0.367391 7_4:-55406303 Msa1163940:CDS
CTCCCATTGCTGTTGATGTC+TGG 0.368048 7_4:+55406853 None:intergenic
ATCTTTACATGTTATGTTGT+CGG 0.370917 7_4:+55404932 None:intergenic
GGTTTAGTCGATGTGGGGAT+TGG 0.377588 7_4:+55409002 None:intergenic
AAGTCAACAGAACATCTTCC+TGG 0.381852 7_4:+55406255 None:intergenic
CGTTGCCCTGGAAAACCTTA+AGG 0.387172 7_4:+55409821 None:intergenic
TGGGACACCATACCATACTT+TGG 0.389184 7_4:+55406275 None:intergenic
TGCTGTGACACTTTGGAGGC+TGG 0.391434 7_4:-55406659 Msa1163940:CDS
GCTCAAATTCAGCGAATTGA+TGG 0.393112 7_4:-55407160 Msa1163940:CDS
CCGTTATGAAATCAGTGAAT+TGG 0.398301 7_4:-55404368 Msa1163940:CDS
AGCTGTAAAGTACAGGATTC+AGG 0.400145 7_4:+55403554 None:intergenic
GCCAGATATGCATGATAATC+TGG 0.402570 7_4:-55406178 Msa1163940:intron
AAAGTACTTCAACTAATAAT+GGG 0.403187 7_4:-55407018 Msa1163940:CDS
ACAGAAGCAGAACTGGTATA+AGG 0.405209 7_4:+55403527 None:intergenic
TACTAGGGATCCGCTTGGCT+TGG 0.406774 7_4:+55404095 None:intergenic
AAATGGGCCAAAGAAGATCT+TGG 0.407779 7_4:-55404301 Msa1163940:CDS
AAGGATAAGAATAAGATTAT+GGG 0.410951 7_4:-55406893 Msa1163940:CDS
ATTTGGGTGAACCCAAAGTA+TGG 0.415501 7_4:-55406287 Msa1163940:CDS
TTCTTTGAAGTCACAAAAGA+TGG 0.415550 7_4:-55404551 Msa1163940:CDS
GGGACACCATACCATACTTT+GGG 0.416059 7_4:+55406276 None:intergenic
GGAGGTTCTTCATCAAGCTT+TGG 0.416994 7_4:-55404347 Msa1163940:CDS
TATCCTTATAGTTGAAGTAC+TGG 0.420342 7_4:+55406909 None:intergenic
AAACCTGATAGCAAGGCAAT+TGG 0.421871 7_4:-55403920 Msa1163940:CDS
TTTGGAAGAGAACACTTTGT+AGG 0.423810 7_4:+55407712 None:intergenic
TGTGCTCTTCATACATATAT+CGG 0.424711 7_4:+55404956 None:intergenic
TCTTTACATGTTATGTTGTC+GGG 0.425268 7_4:+55404933 None:intergenic
AACCTGATAGCAAGGCAATT+GGG 0.428288 7_4:-55403919 Msa1163940:CDS
AATCCTGAATGATATGTTCC+AGG 0.433145 7_4:+55405149 None:intergenic
GTTTAGTCGATGTGGGGATT+GGG 0.434106 7_4:+55409003 None:intergenic
CTTCCGGTGCATACTGAACT+TGG 0.435200 7_4:+55407134 None:intergenic
TATACCTCAATTTCATCAGT+TGG 0.436860 7_4:+55406782 None:intergenic
CAATGGACCTGGAATACAAT+TGG 0.437316 7_4:+55403501 None:intergenic
CTTTGTTCTTGTCCTTGGAC+AGG 0.440380 7_4:-55404406 Msa1163940:CDS
ACATATATCGGTTTCCCATC+GGG 0.442559 7_4:+55404968 None:intergenic
GAGAATATTGAGGGTGAATA+CGG 0.446734 7_4:-55406821 Msa1163940:CDS
GATTTATTCCTGTCTGCTGT+TGG 0.450518 7_4:-55404478 Msa1163940:CDS
TTGGAAGAGAACACTTTGTA+GGG 0.454423 7_4:+55407713 None:intergenic
AAAATTTCTGTGCAGCTTCA+GGG 0.455912 7_4:+55406501 None:intergenic
ACTAGGGATCCGCTTGGCTT+GGG 0.459280 7_4:+55404096 None:intergenic
CCTCTGTGTAGTCTCGTATC+AGG 0.460658 7_4:-55404606 Msa1163940:intron
TTAGGACCAGGCTCAGGCTC+GGG 0.461474 7_4:+55407040 None:intergenic
GAAGTATTGCCATCCATCTC+AGG 0.463056 7_4:+55408981 None:intergenic
GGTTCTCTGCTGTGACACTT+TGG 0.464231 7_4:-55406666 Msa1163940:CDS
GTTATCCTGCTCAGTATTGA+AGG 0.465862 7_4:-55405231 Msa1163940:CDS
TTGGCTCACAGAAGCAGAAC+TGG 0.468632 7_4:+55403520 None:intergenic
ACTAAGTGCAGTCTATAAAT+GGG 0.469259 7_4:-55404317 Msa1163940:CDS
CACTGATTTCATAACGGTAA+AGG 0.470026 7_4:+55404374 None:intergenic
ACAAAGTGTTCTCTTCCAAA+AGG 0.471003 7_4:-55407709 Msa1163940:CDS
GCAAGCATACGTTCCGAAGC+AGG 0.471603 7_4:-55407277 Msa1163940:CDS
AAGGAGCCCGAGCCTGAGCC+TGG 0.473613 7_4:-55407046 Msa1163940:CDS
AATAATATGCGTTCACTCCC+AGG 0.476422 7_4:-55406545 Msa1163940:CDS
ACTTCTCTTCTTGCATCCTC+AGG 0.476635 7_4:+55407544 None:intergenic
TGCTGTTGTCTAAATTTGAT+GGG 0.476913 7_4:+55409958 None:intergenic
TGTGACAAGGAGCCTGAGCC+TGG 0.477456 7_4:-55406983 Msa1163940:CDS
TTTAGGACCAGGCTCAGGCT+CGG 0.479497 7_4:+55407039 None:intergenic
GAAGTTTCTTCATCAACTCC+AGG 0.483405 7_4:-55403851 Msa1163940:CDS
AGCCAGACATCAACAGCAAT+GGG 0.484436 7_4:-55406855 Msa1163940:CDS
AAAGACAAGAAACGTGAGCC+TGG 0.484937 7_4:+55403833 None:intergenic
GATTTCCGGCTAGTTTAGTT+CGG 0.485664 7_4:+55409899 None:intergenic
AAGATGCCTATCAAAGAAAT+GGG 0.487313 7_4:-55404914 Msa1163940:CDS
GGACTACTGTGAGTACTACT+AGG 0.489601 7_4:+55404079 None:intergenic
TGTTAAGAACAGTGAGTACA+AGG 0.491343 7_4:+55403624 None:intergenic
AGCTAGTAGGAGGGACAATA+CGG 0.495876 7_4:+55407239 None:intergenic
CTTCACTGCCAGTTGTAAAA+GGG 0.498787 7_4:-55404521 Msa1163940:CDS
GGTAAAGGAAGTAATTCTGC+TGG 0.499869 7_4:-55403947 Msa1163940:CDS
GTTGCCCTGGAAAACCTTAA+GGG 0.503945 7_4:+55409822 None:intergenic
AAATCCAACTGATGAAATTG+AGG 0.504435 7_4:-55406786 Msa1163940:intron
AAATCTGCTGCAACAAGCAT+TGG 0.504588 7_4:-55403968 Msa1163940:CDS
CAGGGCTGTCAAAGGAAAGA+AGG 0.504964 7_4:+55406519 None:intergenic
TACATATATCGGTTTCCCAT+CGG 0.505837 7_4:+55404967 None:intergenic
AGGGATCCGCTTGGCTTGGG+AGG 0.506797 7_4:+55404099 None:intergenic
CTCTCCCTTCAATACTGAGC+AGG 0.508006 7_4:+55405226 None:intergenic
TCTCTGCTGTGACACTTTGG+AGG 0.508464 7_4:-55406663 Msa1163940:CDS
GGTGGAGAAACAGAGCGAAA+TGG 0.509394 7_4:-55404122 Msa1163940:CDS
GCTGTTACTGGGAGCAGCTA+GGG 0.511571 7_4:-55405003 Msa1163940:CDS
GGATAATTGCATGCCTTCAG+AGG 0.515342 7_4:+55406596 None:intergenic
CAACTATTTACACATTCTAA+CGG 0.516078 7_4:+55403467 None:intergenic
CTCAAATTCAGCGAATTGAT+GGG 0.516662 7_4:-55407159 Msa1163940:CDS
TTGATTTCTGGGAGGCAACT+GGG 0.523006 7_4:+55404266 None:intergenic
ACCTGATAGCAAGGCAATTG+GGG 0.524360 7_4:-55403918 Msa1163940:CDS
GTTCTTCATCAAGCTTTGGA+TGG 0.524369 7_4:-55404343 Msa1163940:CDS
CTGAATATTTAAAATCTGGA+TGG 0.526616 7_4:-55406574 Msa1163940:CDS
CAAAGTGTTCTCTTCCAAAA+GGG 0.531336 7_4:-55407708 Msa1163940:CDS
ATCTCAGGTTTAGTCGATGT+GGG 0.531947 7_4:+55408996 None:intergenic
TGAGAGCTAGTCATAACTTC+CGG 0.532651 7_4:+55407118 None:intergenic
GACTTTGTCACTGTATGTGT+TGG 0.534826 7_4:+55409847 None:intergenic
AAAGTATGGTATGGTGTCCC+AGG 0.535009 7_4:-55406273 Msa1163940:CDS
GGCGGTTTCCAGCTAGTAGG+AGG 0.535578 7_4:+55407229 None:intergenic
AGGCGAAAGCTGTAAAGTAC+AGG 0.536489 7_4:+55403547 None:intergenic
ATTACCAATTTAGTCATAGG+AGG 0.537272 7_4:+55408876 None:intergenic
GTATTGTCCCTCCTACTAGC+TGG 0.537758 7_4:-55407237 Msa1163940:CDS
CTCTGGTCGGATATTATCCA+TGG 0.540007 7_4:+55408933 None:intergenic
CCAATTCACTGATTTCATAA+CGG 0.540819 7_4:+55404368 None:intergenic
TATCATTCAGGATTTGATTG+TGG 0.542048 7_4:-55405140 Msa1163940:CDS
GTGGTAGGTACCTCTTCTGT+TGG 0.542721 7_4:+55407496 None:intergenic
GATGTTAGGGATGCAAAACC+AGG 0.542783 7_4:+55409062 None:intergenic
CCCTCAATATTCTCAACAGA+TGG 0.545292 7_4:+55406830 None:intergenic
CGCGCGATGCATACAACAAG+TGG 0.545626 7_4:-55404180 Msa1163940:CDS
CTGAATTTAGGACCAGGCTC+AGG 0.547456 7_4:+55406971 None:intergenic
GTGGAAACAGCGTAAATCGC+AGG 0.548981 7_4:-55404161 Msa1163940:CDS
CCATCTGTTGAGAATATTGA+GGG 0.549278 7_4:-55406830 Msa1163940:CDS
TCAAAGGAAAGAAGGGAACC+TGG 0.549860 7_4:+55406527 None:intergenic
TGCAGCTTCAGGGCTGTCAA+AGG 0.551585 7_4:+55406511 None:intergenic
ACAATACGGCAAATTCCATA+AGG 0.551943 7_4:+55407253 None:intergenic
TTATGAAATCAGTGAATTGG+AGG 0.552346 7_4:-55404365 Msa1163940:CDS
AGCTGTTACTGGGAGCAGCT+AGG 0.552409 7_4:-55405004 Msa1163940:CDS
CTCACAATTTCAAAGAAAGT+AGG 0.553553 7_4:-55403890 Msa1163940:CDS
TGGAAGAGAACACTTTGTAG+GGG 0.556256 7_4:+55407714 None:intergenic
GGCAACACCAAATTCTTTGG+TGG 0.557509 7_4:-55404140 Msa1163940:CDS
ATTAGATTTCTAGTCCTCAT+CGG 0.557913 7_4:+55403763 None:intergenic
AATTCCATAAGGTCCTGCTT+CGG 0.558482 7_4:+55407264 None:intergenic
TTCAGAGGATCAGAAATCGC+TGG 0.559363 7_4:+55406611 None:intergenic
CAGCCAGACATCAACAGCAA+TGG 0.559438 7_4:-55406856 Msa1163940:CDS
TCATACGACAAGCTGTTACT+GGG 0.559948 7_4:-55405014 Msa1163940:CDS
AGCGATTTCTGATCCTCTGA+AGG 0.565492 7_4:-55406609 Msa1163940:CDS
CACATTCCCACATGTACCCT+AGG 0.568981 7_4:+55406476 None:intergenic
GCCATCTGTTGAGAATATTG+AGG 0.570248 7_4:-55406831 Msa1163940:CDS
TTTGTCACTGTATGTGTTGG+TGG 0.574045 7_4:+55409850 None:intergenic
CATCTCAGGTTTAGTCGATG+TGG 0.575846 7_4:+55408995 None:intergenic
CACATCGACTAAACCTGAGA+TGG 0.577188 7_4:-55408994 Msa1163940:CDS
ACGGACAACCAACAGCAGAC+AGG 0.578818 7_4:+55404470 None:intergenic
TCACTGTATGTGTTGGTGGA+CGG 0.578934 7_4:+55409854 None:intergenic
GGAGTGCGAGATATGTATGC+AGG 0.580170 7_4:-55406204 Msa1163940:CDS
ATTTGGAAGAAGTATCTCGT+TGG 0.581237 7_4:-55406225 Msa1163940:CDS
GCTGCAACAAGCATTGGTAA+AGG 0.581987 7_4:-55403962 Msa1163940:CDS
AGTCAACAGAACATCTTCCT+GGG 0.584474 7_4:+55406256 None:intergenic
TGCTCAGTATTGAAGGGAGA+GGG 0.585190 7_4:-55405224 Msa1163940:CDS
CCATGAAGCAACCACTCAAG+AGG 0.586905 7_4:+55405086 None:intergenic
GACTACTGTGAGTACTACTA+GGG 0.587660 7_4:+55404080 None:intergenic
TCATTCAGCAATATCAAATG+AGG 0.587936 7_4:-55404020 Msa1163940:CDS
TGTTGGTGGACGGACGGAGG+AGG 0.589500 7_4:+55409864 None:intergenic
CATGGCGGTTTCCAGCTAGT+AGG 0.590626 7_4:+55407226 None:intergenic
AGGGCTGTCAAAGGAAAGAA+GGG 0.592701 7_4:+55406520 None:intergenic
AGGAGAATTCTGCCTGTCCA+AGG 0.593390 7_4:+55404394 None:intergenic
AAAGGATGACAATGTTAAGT+CGG 0.595966 7_4:-55409027 Msa1163940:CDS
CTGCTCAGTATTGAAGGGAG+AGG 0.597882 7_4:-55405225 Msa1163940:CDS
GTAAAGGAAGTAATTCTGCT+GGG 0.598380 7_4:-55403946 Msa1163940:CDS
AGCTCTGATCTGCTGCGACG+CGG 0.599973 7_4:+55409788 None:intergenic
ACATTCCCACATGTACCCTA+GGG 0.600704 7_4:+55406477 None:intergenic
CCTACCTGTGTTGTCAATGT+CGG 0.600822 7_4:+55409754 None:intergenic
TGGGATCAAACCTGATAGCA+AGG 0.606044 7_4:-55403927 Msa1163940:CDS
GGAAGAAACAACAATGGACC+TGG 0.607458 7_4:+55403490 None:intergenic
TACTGAATACACCGATACAC+TGG 0.607962 7_4:+55405197 None:intergenic
TATTAGCAATAAACCTAGAG+AGG 0.609195 7_4:+55403709 None:intergenic
TGCAAAACCAGGCGGAATCG+AGG 0.610417 7_4:+55409073 None:intergenic
AGATTTGTGCACTACGGCCA+TGG 0.610861 7_4:-55408950 Msa1163940:CDS
TTGAGACTGAATTTAGGACC+AGG 0.613583 7_4:+55406965 None:intergenic
AAAGCTAAAGAGAAAATGGT+GGG 0.613758 7_4:-55403995 Msa1163940:CDS
TCTCACCGAACTAAACTAGC+CGG 0.619354 7_4:-55409904 Msa1163940:CDS
TACTTCAACTAATAATGGGA+AGG 0.620636 7_4:-55407014 Msa1163940:CDS
GAGAGGGTATACCAGTGTAT+CGG 0.623299 7_4:-55405208 Msa1163940:CDS
GATGAAAGTAGCCACGGACA+AGG 0.625493 7_4:-55407065 Msa1163940:CDS
AAGACACACAAACTTGTCAT+CGG 0.626742 7_4:+55404444 None:intergenic
TTGTGGTTTCAACTGTTCTG+AGG 0.627086 7_4:-55405123 Msa1163940:CDS
AAAAGAACCTATATTGCAGT+CGG 0.627731 7_4:-55404203 Msa1163940:CDS
GGAAGCTGTGAGGACCCGAT+GGG 0.628302 7_4:-55404982 Msa1163940:CDS
GCACCAAGTTCAGTATGCAC+CGG 0.628932 7_4:-55407137 Msa1163940:CDS
ACAAACTTGTCATCGGAGCA+CGG 0.629702 7_4:+55404451 None:intergenic
TTATCCTGCTCAGTATTGAA+GGG 0.633909 7_4:-55405230 Msa1163940:CDS
TCAGGAGTGAAAGTTTGAAG+AGG 0.636631 7_4:-55404588 Msa1163940:CDS
TCGACTAAACCTGAGATGGA+TGG 0.637166 7_4:-55408990 Msa1163940:CDS
GGAAGAGAACACTTTGTAGG+GGG 0.638236 7_4:+55407715 None:intergenic
TAGGTACCTCTTCTGTTGGA+CGG 0.638827 7_4:+55407500 None:intergenic
CAAAGGAAAGAAGGGAACCT+GGG 0.640625 7_4:+55406528 None:intergenic
TGTATGTGTTGGTGGACGGA+CGG 0.641257 7_4:+55409858 None:intergenic
TCTCAGGTTTAGTCGATGTG+GGG 0.642919 7_4:+55408997 None:intergenic
AAAAGTGATGAAAGTAGCCA+CGG 0.644146 7_4:-55407071 Msa1163940:CDS
ACTAAACTAGCCGGAAATCG+CGG 0.644709 7_4:-55409895 Msa1163940:CDS
GGTGAACCCAAAGTATGGTA+TGG 0.647828 7_4:-55406282 Msa1163940:CDS
ATAAACAGATTTGTGCACTA+CGG 0.655577 7_4:-55408956 Msa1163940:CDS
AGTACTACTAGGGATCCGCT+TGG 0.655954 7_4:+55404090 None:intergenic
GCGGTTTCCAGCTAGTAGGA+GGG 0.665415 7_4:+55407230 None:intergenic
TAACGGGGAAGAAACAACAA+TGG 0.675016 7_4:+55403484 None:intergenic
TGCACCGACATTGACAACAC+AGG 0.679889 7_4:-55409758 Msa1163940:intron
CAAAGCTAAAGAGAAAATGG+TGG 0.686433 7_4:-55403996 Msa1163940:CDS
AAATGGCCTCCCAAGCCAAG+CGG 0.688657 7_4:-55404105 Msa1163940:CDS
ATGTGTTGGTGGACGGACGG+AGG 0.692868 7_4:+55409861 None:intergenic
CCAGAGCAAGTGTAAAACTG+AGG 0.699405 7_4:-55408916 Msa1163940:CDS
TCTGGAACCAGGTAACAGCA+AGG 0.702176 7_4:-55407573 Msa1163940:intron
ACTATTTACACATTCTAACG+GGG 0.706690 7_4:+55403469 None:intergenic
TAGTTCTTCAGAATCCGATG+AGG 0.708240 7_4:-55403777 Msa1163940:CDS
GTTAGGGATGCAAAACCAGG+CGG 0.712509 7_4:+55409065 None:intergenic
AATGGCATTACCCATCTGAG+AGG 0.718338 7_4:+55406446 None:intergenic
AAGACAAGAACAAACTCACG+AGG 0.728244 7_4:+55405173 None:intergenic
GAAGGTTAAAGACTGTGACA+AGG 0.732117 7_4:-55406996 Msa1163940:CDS
AAGCTAAAGAGAAAATGGTG+GGG 0.744347 7_4:-55403994 Msa1163940:CDS
GGAACCAGGTAACAGCAAGG+TGG 0.748113 7_4:-55407570 Msa1163940:intron
CATTCCCACATGTACCCTAG+GGG 0.752220 7_4:+55406478 None:intergenic
GAGCAGCTAGGGAAGCTGTG+AGG 0.761413 7_4:-55404992 Msa1163940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATATCATATTTGAT+TGG - chr7_4:55404279-55404298 Msa1163940:CDS 10.0%
!!! ATTCTTAATTTTATTTAACA+CGG + chr7_4:55405549-55405568 None:intergenic 10.0%
!! CTTAAATATAAAAAAACAAA+TGG + chr7_4:55407365-55407384 None:intergenic 10.0%
!! AAAGTTTAATACTATAAATA+AGG + chr7_4:55407803-55407822 None:intergenic 10.0%
!! TAATGAAAATAGTAGTAAAT+AGG + chr7_4:55403745-55403764 None:intergenic 15.0%
!!! GATTTTTGTAAAATTGATTT+CGG - chr7_4:55403861-55403880 Msa1163940:CDS 15.0%
!!! TAAAAATAACTTTTAGAATG+TGG - chr7_4:55403959-55403978 Msa1163940:CDS 15.0%
!!! AAAAATAACTTTTAGAATGT+GGG - chr7_4:55403960-55403979 Msa1163940:CDS 15.0%
!! ATAATTATCTATGAATATCA+GGG + chr7_4:55404010-55404029 None:intergenic 15.0%
!! AATAATTATCTATGAATATC+AGG + chr7_4:55404011-55404030 None:intergenic 15.0%
!! CTTAATGAAATTATTAGTTA+TGG - chr7_4:55404082-55404101 Msa1163940:CDS 15.0%
!!! TGTTATTCATTTTATGTTTA+TGG - chr7_4:55404226-55404245 Msa1163940:CDS 15.0%
!!! TTTTAGATAAAAAGATGTTA+GGG + chr7_4:55404398-55404417 None:intergenic 15.0%
!!! TTTTTAGATAAAAAGATGTT+AGG + chr7_4:55404399-55404418 None:intergenic 15.0%
!!! AACATCTTTTTATCTAAAAA+AGG - chr7_4:55404399-55404418 Msa1163940:CDS 15.0%
!!! TTGGTAATTTTCAATTTTTT+TGG - chr7_4:55404583-55404602 Msa1163940:CDS 15.0%
!!! CATATATTTTTTCAAGAATT+TGG - chr7_4:55404947-55404966 Msa1163940:CDS 15.0%
!! AGAAAGTAATAAATAGTTAA+GGG - chr7_4:55405177-55405196 Msa1163940:CDS 15.0%
!! GTTGTTTATTTATATAAATC+TGG - chr7_4:55405853-55405872 Msa1163940:intron 15.0%
!! TGTAATATAATGAGTATAAT+TGG + chr7_4:55407134-55407153 None:intergenic 15.0%
!!! ATGTTAGAAACAATTTATTT+TGG - chr7_4:55409863-55409882 Msa1163940:CDS 15.0%
!!! TGTTAGAAACAATTTATTTT+GGG - chr7_4:55409864-55409883 Msa1163940:CDS 15.0%
!!! TTTTTTTTTTGTGTGTTTGA+TGG + chr7_4:55403515-55403534 None:intergenic 20.0%
!! AAAATTACCAATTTAGTCAT+AGG + chr7_4:55404574-55404593 None:intergenic 20.0%
!! ACCAAAACAACTTATAATTA+GGG + chr7_4:55405039-55405058 None:intergenic 20.0%
!! GAGAAAGTAATAAATAGTTA+AGG - chr7_4:55405176-55405195 Msa1163940:CDS 20.0%
!! ATATTGAACGACATATAATT+TGG - chr7_4:55405216-55405235 Msa1163940:CDS 20.0%
!! TATTGAACGACATATAATTT+GGG - chr7_4:55405217-55405236 Msa1163940:CDS 20.0%
!!! TTAAAACAATTACTGCATTT+TGG + chr7_4:55405777-55405796 None:intergenic 20.0%
!!! AAAATGCAGTAATTGTTTTA+AGG - chr7_4:55405776-55405795 Msa1163940:intron 20.0%
!! TATAAATAAACAACCAAAAG+TGG + chr7_4:55405847-55405866 None:intergenic 20.0%
!! TACAATTGAATACATTATCA+AGG - chr7_4:55406064-55406083 Msa1163940:intron 20.0%
!! TCAAAGAAACTTAAATAATG+TGG - chr7_4:55406090-55406109 Msa1163940:intron 20.0%
!! TTAAATAATGTGGATTCATA+TGG - chr7_4:55406100-55406119 Msa1163940:intron 20.0%
!! TCTTGAAAAAAAGAATGTAT+GGG - chr7_4:55406244-55406263 Msa1163940:CDS 20.0%
!!! TTATTAGTTGAAGTACTTTT+AGG + chr7_4:55406425-55406444 None:intergenic 20.0%
!!! AAAAGTACTTCAACTAATAA+TGG - chr7_4:55406425-55406444 Msa1163940:intron 20.0%
!!! AAAGTACTTCAACTAATAAT+GGG - chr7_4:55406426-55406445 Msa1163940:intron 20.0%
!!! TCTCAAAACTTTTAAGAAAT+TGG - chr7_4:55406496-55406515 Msa1163940:CDS 20.0%
!! TAAGGATAAGAATAAGATTA+TGG - chr7_4:55406550-55406569 Msa1163940:CDS 20.0%
!! AAGGATAAGAATAAGATTAT+GGG - chr7_4:55406551-55406570 Msa1163940:CDS 20.0%
!!! AATATTTTCACAACTTATCA+AGG + chr7_4:55406734-55406753 None:intergenic 20.0%
!!! TATCCTGAATATTTAAAATC+TGG - chr7_4:55406866-55406885 Msa1163940:CDS 20.0%
!! GTATAATGCAATAAATCAAA+TGG + chr7_4:55407019-55407038 None:intergenic 20.0%
!!! GTTTTGTCAAATGATTATAA+AGG + chr7_4:55407095-55407114 None:intergenic 20.0%
!! TCATTATATTACATGCATTT+GGG - chr7_4:55407141-55407160 Msa1163940:CDS 20.0%
!! GATATGATATTTGACAAAAT+AGG + chr7_4:55407421-55407440 None:intergenic 20.0%
!! AAAATTATGGCATTAAAACA+TGG + chr7_4:55407551-55407570 None:intergenic 20.0%
!! TCCAAATTCATGAAAAATTA+TGG + chr7_4:55407564-55407583 None:intergenic 20.0%
!! ATTATCATTCCTTCAAATTT+GGG + chr7_4:55407662-55407681 None:intergenic 20.0%
!! AATTATCATTCCTTCAAATT+TGG + chr7_4:55407663-55407682 None:intergenic 20.0%
!! GTATTAAACTTTAGATGTAA+TGG - chr7_4:55407811-55407830 Msa1163940:intron 20.0%
!! TAAATACAACCAAAGAATAT+TGG + chr7_4:55407983-55408002 None:intergenic 20.0%
!!! TTTGGTTGTATTTATTCTTT+TGG - chr7_4:55407989-55408008 Msa1163940:intron 20.0%
!!! TGATTCTTAGTTTGAATATT+TGG - chr7_4:55408177-55408196 Msa1163940:intron 20.0%
!! AAACATAATTAGTATGCATA+GGG + chr7_4:55408814-55408833 None:intergenic 20.0%
!! AAAAGTAAAAACTTTCTTTC+TGG + chr7_4:55409707-55409726 None:intergenic 20.0%
!!! AATTAGTATATCTTTTTCGT+TGG - chr7_4:55409792-55409811 Msa1163940:CDS 20.0%
!!! AGGATACTAAATTTAGTTCT+TGG - chr7_4:55403710-55403729 Msa1163940:three_prime_UTR 25.0%
! TTACTAAAATAAGCTCAAGA+AGG - chr7_4:55404120-55404139 Msa1163940:CDS 25.0%
! TACTAAAATAAGCTCAAGAA+GGG - chr7_4:55404121-55404140 Msa1163940:CDS 25.0%
! AGGACAAGATCATTAAAATT+TGG + chr7_4:55404675-55404694 None:intergenic 25.0%
!!! TCAAGAATTTGGTTTGAATA+AGG - chr7_4:55404958-55404977 Msa1163940:CDS 25.0%
! TATCTAAGTGTGTATTCTAT+CGG + chr7_4:55405003-55405022 None:intergenic 25.0%
! AAACAACTTATAATTAGGGA+CGG + chr7_4:55405035-55405054 None:intergenic 25.0%
!! TCCCTAATTATAAGTTGTTT+TGG - chr7_4:55405035-55405054 Msa1163940:CDS 25.0%
! GACCAAAACAACTTATAATT+AGG + chr7_4:55405040-55405059 None:intergenic 25.0%
! ATGAAATGCAATTATCTCTA+TGG - chr7_4:55405074-55405093 Msa1163940:CDS 25.0%
! TGAAATGCAATTATCTCTAT+GGG - chr7_4:55405075-55405094 Msa1163940:CDS 25.0%
! ACGAAATTGTCCTTAATAAA+TGG - chr7_4:55405121-55405140 Msa1163940:CDS 25.0%
! ATTGTCCTTAATAAATGGTA+TGG - chr7_4:55405126-55405145 Msa1163940:CDS 25.0%
! TTGTCCTTAATAAATGGTAT+GGG - chr7_4:55405127-55405146 Msa1163940:CDS 25.0%
!!! AAACACATAAAAGTTTGCTA+CGG + chr7_4:55405322-55405341 None:intergenic 25.0%
! TAAGAACTTAGAAGTTAGAT+AGG - chr7_4:55405470-55405489 Msa1163940:intron 25.0%
!!! AATTTTATTTAACACGGAAC+AGG + chr7_4:55405543-55405562 None:intergenic 25.0%
! GAATTAGTACTCTTTGAATT+TGG + chr7_4:55405572-55405591 None:intergenic 25.0%
! TATAGTAATATGGAAAGTTC+AGG + chr7_4:55405817-55405836 None:intergenic 25.0%
!! ATTTATATAAATCTGGAACC+AGG - chr7_4:55405860-55405879 Msa1163940:intron 25.0%
! TTGATTTATGTCATCAAATG+TGG - chr7_4:55406018-55406037 Msa1163940:intron 25.0%
!!! TTCTTTTTTTCAAGAGTACA+TGG + chr7_4:55406239-55406258 None:intergenic 25.0%
! CTCTTGAAAAAAAGAATGTA+TGG - chr7_4:55406243-55406262 Msa1163940:CDS 25.0%
!!! AAAGTTTTGAGACTGAATTT+AGG + chr7_4:55406488-55406507 None:intergenic 25.0%
! TCAAGGACTAAAATTATAGA+AGG + chr7_4:55406717-55406736 None:intergenic 25.0%
!! CATCCAGATTTTAAATATTC+AGG + chr7_4:55406872-55406891 None:intergenic 25.0%
!! CTGAATATTTAAAATCTGGA+TGG - chr7_4:55406870-55406889 Msa1163940:CDS 25.0%
! GATTATAAAGGATAGTAATC+AGG + chr7_4:55407083-55407102 None:intergenic 25.0%
! CTCATTATATTACATGCATT+TGG - chr7_4:55407140-55407159 Msa1163940:CDS 25.0%
!!! ATATCATATCATTGATTCGA+TGG - chr7_4:55407431-55407450 Msa1163940:intron 25.0%
! TTCCAGAAATAGTAATAGTT+GGG + chr7_4:55407512-55407531 None:intergenic 25.0%
!! GCCATAATTTTTCATGAATT+TGG - chr7_4:55407560-55407579 Msa1163940:CDS 25.0%
!!! TCTAAGAGGAATTTTATTTG+TGG - chr7_4:55407754-55407773 Msa1163940:intron 25.0%
!!! CTAAGAGGAATTTTATTTGT+GGG - chr7_4:55407755-55407774 Msa1163940:intron 25.0%
! GTAATGACTTGAAATATAAG+AGG - chr7_4:55408106-55408125 Msa1163940:intron 25.0%
!! TTAGTTTGAATATTTGGTAC+AGG - chr7_4:55408183-55408202 Msa1163940:intron 25.0%
! ATCTTTACATGTTATGTTGT+CGG + chr7_4:55408515-55408534 None:intergenic 25.0%
!! TTTTCATTCATCAAGATGAA+TGG + chr7_4:55408663-55408682 None:intergenic 25.0%
! GAATGAAAATGAAGAAATAG+TGG - chr7_4:55408674-55408693 Msa1163940:intron 25.0%
!!! TTTATTTTCATTCTTGCGTA+TGG - chr7_4:55408752-55408771 Msa1163940:intron 25.0%
! CAAACATAATTAGTATGCAT+AGG + chr7_4:55408815-55408834 None:intergenic 25.0%
!!! TGAATCATTTACTTTTTCTG+GGG + chr7_4:55409210-55409229 None:intergenic 25.0%
!!! CTGAATCATTTACTTTTTCT+GGG + chr7_4:55409211-55409230 None:intergenic 25.0%
!!! TCTGAATCATTTACTTTTTC+TGG + chr7_4:55409212-55409231 None:intergenic 25.0%
!!! GTAAAGTTGTGTTCTTTTTT+GGG + chr7_4:55409403-55409422 None:intergenic 25.0%
!!! AGTAAAGTTGTGTTCTTTTT+TGG + chr7_4:55409404-55409423 None:intergenic 25.0%
!! AAGAAACTTCAGAAACTTTT+GGG + chr7_4:55409583-55409602 None:intergenic 25.0%
!!! TTGTTTCTAACATGCATATT+AGG + chr7_4:55409856-55409875 None:intergenic 25.0%
!!! TAGAAACAATTTATTTTGGG+AGG - chr7_4:55409867-55409886 Msa1163940:CDS 25.0%
TGCTGTTGTCTAAATTTGAT+GGG + chr7_4:55403489-55403508 None:intergenic 30.0%
TAGCATACACAAGAAAAATG+TGG + chr7_4:55403775-55403794 None:intergenic 30.0%
AAAGGATGACAATGTTAAGT+CGG - chr7_4:55404417-55404436 Msa1163940:CDS 30.0%
ATAAACAGATTTGTGCACTA+CGG - chr7_4:55404488-55404507 Msa1163940:CDS 30.0%
ATTACCAATTTAGTCATAGG+AGG + chr7_4:55404571-55404590 None:intergenic 30.0%
CATTTCAGACTCAATATTCT+GGG + chr7_4:55404622-55404641 None:intergenic 30.0%
TCATTTCAGACTCAATATTC+TGG + chr7_4:55404623-55404642 None:intergenic 30.0%
!!! AGCAACACTGATTTTTCAAA+AGG + chr7_4:55404695-55404714 None:intergenic 30.0%
! TATCAATTGTTAAGGTGTCT+TGG + chr7_4:55404747-55404766 None:intergenic 30.0%
TGAGGACATATCAATTGTTA+AGG + chr7_4:55404755-55404774 None:intergenic 30.0%
TTAACAATTGATATGTCCTC+AGG - chr7_4:55404754-55404773 Msa1163940:intron 30.0%
CTTTCCCATACCATTTATTA+AGG + chr7_4:55405134-55405153 None:intergenic 30.0%
!! AACACATAAAAGTTTGCTAC+GGG + chr7_4:55405321-55405340 None:intergenic 30.0%
ATATGTCCAGTTATGTTTGA+CGG - chr7_4:55405373-55405392 Msa1163940:intron 30.0%
AGTTAAAGATAACTGCATTC+AGG - chr7_4:55405496-55405515 Msa1163940:intron 30.0%
GTATGAAGGCAAAATAACTA+TGG - chr7_4:55405680-55405699 Msa1163940:intron 30.0%
TGGTCATCTCTATAGTAATA+TGG + chr7_4:55405827-55405846 None:intergenic 30.0%
!!! TTTTTTTCAAGAGTACATGG+CGG + chr7_4:55406236-55406255 None:intergenic 30.0%
!! TTTCATCACTTTTCTTCTCT+TGG + chr7_4:55406366-55406385 None:intergenic 30.0%
! TACTTCAACTAATAATGGGA+AGG - chr7_4:55406430-55406449 Msa1163940:intron 30.0%
TATCCTTATAGTTGAAGTAC+TGG + chr7_4:55406538-55406557 None:intergenic 30.0%
AAGAATAAGATTATGGGTTC+TGG - chr7_4:55406557-55406576 Msa1163940:CDS 30.0%
AAATCCAACTGATGAAATTG+AGG - chr7_4:55406658-55406677 Msa1163940:CDS 30.0%
TATACCTCAATTTCATCAGT+TGG + chr7_4:55406665-55406684 None:intergenic 30.0%
TAGTAATCAGGAGATTCATT+AGG + chr7_4:55407071-55407090 None:intergenic 30.0%
!! CTGTTGACTTTGAAACAATT+TGG - chr7_4:55407202-55407221 Msa1163940:CDS 30.0%
TTATCATTGAAAAGTGACAG+TGG - chr7_4:55407325-55407344 Msa1163940:intron 30.0%
GTTCCAGAAATAGTAATAGT+TGG + chr7_4:55407513-55407532 None:intergenic 30.0%
! TAGTTGATTCCCAAATTTGA+AGG - chr7_4:55407650-55407669 Msa1163940:intron 30.0%
TTCATCAACTGAAACTCAAT+TGG - chr7_4:55407697-55407716 Msa1163940:CDS 30.0%
TCATCAACTGAAACTCAATT+GGG - chr7_4:55407698-55407717 Msa1163940:CDS 30.0%
! TTTAAGCTTTTTACTGAAGC+GGG + chr7_4:55407943-55407962 None:intergenic 30.0%
! GTTTAAGCTTTTTACTGAAG+CGG + chr7_4:55407944-55407963 None:intergenic 30.0%
AATATTGGAAGCTGAAGTAA+AGG + chr7_4:55407968-55407987 None:intergenic 30.0%
! TACAGTTCTTTTAGTACACA+AGG - chr7_4:55408131-55408150 Msa1163940:intron 30.0%
! ACAGTTCTTTTAGTACACAA+GGG - chr7_4:55408132-55408151 Msa1163940:intron 30.0%
TATCATTCAGGATTTGATTG+TGG - chr7_4:55408304-55408323 Msa1163940:intron 30.0%
TTCTCTTCTGTTCACTATAT+AGG + chr7_4:55408399-55408418 None:intergenic 30.0%
TGTGCTCTTCATACATATAT+CGG + chr7_4:55408491-55408510 None:intergenic 30.0%
TCTTTACATGTTATGTTGTC+GGG + chr7_4:55408514-55408533 None:intergenic 30.0%
AAAGATGCCTATCAAAGAAA+TGG - chr7_4:55408529-55408548 Msa1163940:intron 30.0%
AAGATGCCTATCAAAGAAAT+GGG - chr7_4:55408530-55408549 Msa1163940:intron 30.0%
TAAATGATGTCATCGAATCT+AGG + chr7_4:55408598-55408617 None:intergenic 30.0%
! ATAATAAAAGACAGCTCTGA+AGG - chr7_4:55408717-55408736 Msa1163940:intron 30.0%
CGCAAGAATGAAAATAAAAG+AGG + chr7_4:55408750-55408769 None:intergenic 30.0%
!! TTCTTTGAAGTCACAAAAGA+TGG - chr7_4:55408893-55408912 Msa1163940:CDS 30.0%
!! CCAATTCACTGATTTCATAA+CGG + chr7_4:55409079-55409098 None:intergenic 30.0%
TTATGAAATCAGTGAATTGG+AGG - chr7_4:55409079-55409098 Msa1163940:CDS 30.0%
AACTAAGTGCAGTCTATAAA+TGG - chr7_4:55409126-55409145 Msa1163940:intron 30.0%
ACTAAGTGCAGTCTATAAAT+GGG - chr7_4:55409127-55409146 Msa1163940:intron 30.0%
AGTTAAACCAAGATCTTCTT+TGG + chr7_4:55409153-55409172 None:intergenic 30.0%
AAAAGAACCTATATTGCAGT+CGG - chr7_4:55409241-55409260 Msa1163940:intron 30.0%
TCATTCAGCAATATCAAATG+AGG - chr7_4:55409424-55409443 Msa1163940:intron 30.0%
AAAGCTAAAGAGAAAATGGT+GGG - chr7_4:55409449-55409468 Msa1163940:intron 30.0%
CTCACAATTTCAAAGAAAGT+AGG - chr7_4:55409554-55409573 Msa1163940:intron 30.0%
! GAAGAAACTTCAGAAACTTT+TGG + chr7_4:55409584-55409603 None:intergenic 30.0%
CTTTACTACAAGAGAACATT+TGG - chr7_4:55409630-55409649 Msa1163940:intron 30.0%
!! ATTAGATTTCTAGTCCTCAT+CGG + chr7_4:55409684-55409703 None:intergenic 30.0%
! CTTTTTATAATGTCCTCTCT+AGG - chr7_4:55409722-55409741 Msa1163940:intron 30.0%
TATTAGCAATAAACCTAGAG+AGG + chr7_4:55409738-55409757 None:intergenic 30.0%
CTGCTGTTGTCTAAATTTGA+TGG + chr7_4:55403490-55403509 None:intergenic 35.0%
GATGTGACACTTAACATGAA+CGG + chr7_4:55404041-55404060 None:intergenic 35.0%
GAGATGCATTAGCAAAAGTA+CGG - chr7_4:55404641-55404660 Msa1163940:intron 35.0%
ACACTATTTGTATGCAAGTC+AGG + chr7_4:55404863-55404882 None:intergenic 35.0%
AACTTATAATTAGGGACGGA+GGG + chr7_4:55405031-55405050 None:intergenic 35.0%
TCCCAAAGCGACTTATAATT+TGG - chr7_4:55405254-55405273 Msa1163940:intron 35.0%
! CCCAAATTATAAGTCGCTTT+GGG + chr7_4:55405258-55405277 None:intergenic 35.0%
CCCAAAGCGACTTATAATTT+GGG - chr7_4:55405255-55405274 Msa1163940:intron 35.0%
TCCCAAATTATAAGTCGCTT+TGG + chr7_4:55405259-55405278 None:intergenic 35.0%
AAGCGACTTATAATTTGGGA+TGG - chr7_4:55405259-55405278 Msa1163940:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG - chr7_4:55405263-55405282 Msa1163940:intron 35.0%
TAAATGCCGTCAAACATAAC+TGG + chr7_4:55405382-55405401 None:intergenic 35.0%
CAAAACAAACCAGTCATCAA+GGG + chr7_4:55405659-55405678 None:intergenic 35.0%
TCAAAACAAACCAGTCATCA+AGG + chr7_4:55405660-55405679 None:intergenic 35.0%
!!! CTGGTTTGTTTTGAGTATGA+AGG - chr7_4:55405666-55405685 Msa1163940:intron 35.0%
TTGGAAGAGAACACTTTGTA+GGG + chr7_4:55405734-55405753 None:intergenic 35.0%
TTTGGAAGAGAACACTTTGT+AGG + chr7_4:55405735-55405754 None:intergenic 35.0%
! ACAAAGTGTTCTCTTCCAAA+AGG - chr7_4:55405735-55405754 Msa1163940:intron 35.0%
! CAAAGTGTTCTCTTCCAAAA+GGG - chr7_4:55405736-55405755 Msa1163940:intron 35.0%
! GCATTTTGGACATCCATATT+TGG + chr7_4:55405763-55405782 None:intergenic 35.0%
! ACTATAGAGATGACCACTTT+TGG - chr7_4:55405831-55405850 Msa1163940:intron 35.0%
TATGGTTGTATACATGATGC+AGG - chr7_4:55406118-55406137 Msa1163940:intron 35.0%
ACAATACGGCAAATTCCATA+AGG + chr7_4:55406194-55406213 None:intergenic 35.0%
CTCAAATTCAGCGAATTGAT+GGG - chr7_4:55406285-55406304 Msa1163940:CDS 35.0%
AAAAGTGATGAAAGTAGCCA+CGG - chr7_4:55406373-55406392 Msa1163940:intron 35.0%
GATCCAGTACTTCAACTATA+AGG - chr7_4:55406532-55406551 Msa1163940:CDS 35.0%
CCATCTGTTGAGAATATTGA+GGG - chr7_4:55406614-55406633 Msa1163940:CDS 35.0%
GAGAATATTGAGGGTGAATA+CGG - chr7_4:55406623-55406642 Msa1163940:CDS 35.0%
TAATTCTGCCACATTGTTCT+AGG - chr7_4:55406757-55406776 Msa1163940:intron 35.0%
AAAATTTCTGTGCAGCTTCA+GGG + chr7_4:55406946-55406965 None:intergenic 35.0%
!! ATTTGGAAGAAGTATCTCGT+TGG - chr7_4:55407219-55407238 Msa1163940:CDS 35.0%
ACCAGATTATCATGCATATC+TGG + chr7_4:55407270-55407289 None:intergenic 35.0%
ATGCACAGATTCACATTGAA+AGG + chr7_4:55407398-55407417 None:intergenic 35.0%
TTGGGACATAATGACTGAAA+GGG + chr7_4:55407494-55407513 None:intergenic 35.0%
GTCCCAACTATTACTATTTC+TGG - chr7_4:55407507-55407526 Msa1163940:CDS 35.0%
GAAGCATAGGTTTATCTAAG+AGG - chr7_4:55407740-55407759 Msa1163940:intron 35.0%
GATGTAATGGCATCTTGTTA+AGG - chr7_4:55407824-55407843 Msa1163940:intron 35.0%
TTCGGTTTACATATGCATGA+GGG + chr7_4:55407860-55407879 None:intergenic 35.0%
CTTCAGCTTCCAATATTCTT+TGG - chr7_4:55407971-55407990 Msa1163940:intron 35.0%
!! TTTCTATTTCTGCTCTCTGT+TGG + chr7_4:55408054-55408073 None:intergenic 35.0%
! TTATCCTGCTCAGTATTGAA+GGG - chr7_4:55408214-55408233 Msa1163940:intron 35.0%
TTTCCTGGAACATATCATTC+AGG - chr7_4:55408292-55408311 Msa1163940:intron 35.0%
AATCCTGAATGATATGTTCC+AGG + chr7_4:55408298-55408317 None:intergenic 35.0%
!! TACATATATCGGTTTCCCAT+CGG + chr7_4:55408480-55408499 None:intergenic 35.0%
CAAGATCCCATTTCTTTGAT+AGG + chr7_4:55408539-55408558 None:intergenic 35.0%
! TGTCATCGAATCTAGGATTT+AGG + chr7_4:55408591-55408610 None:intergenic 35.0%
! CTTTTGTGACTTCAAAGAAG+TGG + chr7_4:55408892-55408911 None:intergenic 35.0%
AAGACACACAAACTTGTCAT+CGG + chr7_4:55409003-55409022 None:intergenic 35.0%
!! CACTGATTTCATAACGGTAA+AGG + chr7_4:55409073-55409092 None:intergenic 35.0%
CCGTTATGAAATCAGTGAAT+TGG - chr7_4:55409076-55409095 Msa1163940:CDS 35.0%
!!! TGGGGTTTGTTTTGATTTCT+GGG + chr7_4:55409192-55409211 None:intergenic 35.0%
TGTTTCTCCACCAAAGAATT+TGG + chr7_4:55409314-55409333 None:intergenic 35.0%
!!! TGTGTTCTTTTTTGGGTGAA+TGG + chr7_4:55409396-55409415 None:intergenic 35.0%
GGTCAAAGCTAAAGAGAAAA+TGG - chr7_4:55409445-55409464 Msa1163940:intron 35.0%
CAAAGCTAAAGAGAAAATGG+TGG - chr7_4:55409448-55409467 Msa1163940:intron 35.0%
AAGCTAAAGAGAAAATGGTG+GGG - chr7_4:55409450-55409469 Msa1163940:intron 35.0%
GTAAAGGAAGTAATTCTGCT+GGG - chr7_4:55409498-55409517 Msa1163940:intron 35.0%
TGTTAAGAACAGTGAGTACA+AGG + chr7_4:55409823-55409842 None:intergenic 35.0%
!! GATTTCCGGCTAGTTTAGTT+CGG + chr7_4:55403548-55403567 None:intergenic 40.0%
TTTGTCACTGTATGTGTTGG+TGG + chr7_4:55403597-55403616 None:intergenic 40.0%
GACTTTGTCACTGTATGTGT+TGG + chr7_4:55403600-55403619 None:intergenic 40.0%
TGACACTTAACATGAACGGA+GGG + chr7_4:55404037-55404056 None:intergenic 40.0%
ATCTCAGGTTTAGTCGATGT+GGG + chr7_4:55404451-55404470 None:intergenic 40.0%
! AGTTTTACACTTGCTCTGGT+CGG + chr7_4:55404527-55404546 None:intergenic 40.0%
GCATCCTCCTATGACTAAAT+TGG - chr7_4:55404564-55404583 Msa1163940:CDS 40.0%
ACAATTGATATGTCCTCAGG+CGG - chr7_4:55404757-55404776 Msa1163940:intron 40.0%
CAACTTATAATTAGGGACGG+AGG + chr7_4:55405032-55405051 None:intergenic 40.0%
! CGACTTATAATTTGGGATGG+AGG - chr7_4:55405262-55405281 Msa1163940:intron 40.0%
CATGTCTCTTTAAGCAGAGT+CGG - chr7_4:55405440-55405459 Msa1163940:intron 40.0%
! ACCTTTAAACCCTTGATGAC+TGG - chr7_4:55405647-55405666 Msa1163940:intron 40.0%
ACCAGTCATCAAGGGTTTAA+AGG + chr7_4:55405651-55405670 None:intergenic 40.0%
TGGAAGAGAACACTTTGTAG+GGG + chr7_4:55405733-55405752 None:intergenic 40.0%
CTTCCAAAAGGGACCAAATA+TGG - chr7_4:55405747-55405766 Msa1163940:intron 40.0%
! CATCCATATTTGGTCCCTTT+TGG + chr7_4:55405753-55405772 None:intergenic 40.0%
TCTTCTGTTGGACGGAAAAT+AGG + chr7_4:55405939-55405958 None:intergenic 40.0%
! TATTTTCCGTCCAACAGAAG+AGG - chr7_4:55405938-55405957 Msa1163940:intron 40.0%
TACATGCTATCACGCTTAAG+TGG + chr7_4:55405970-55405989 None:intergenic 40.0%
AATTCCATAAGGTCCTGCTT+CGG + chr7_4:55406183-55406202 None:intergenic 40.0%
GCTCAAATTCAGCGAATTGA+TGG - chr7_4:55406284-55406303 Msa1163940:CDS 40.0%
TGAGAGCTAGTCATAACTTC+CGG + chr7_4:55406329-55406348 None:intergenic 40.0%
!!! GTTGAAGTACTTTTAGGACC+AGG + chr7_4:55406419-55406438 None:intergenic 40.0%
GAAGGTTAAAGACTGTGACA+AGG - chr7_4:55406448-55406467 Msa1163940:intron 40.0%
! TTGAGACTGAATTTAGGACC+AGG + chr7_4:55406482-55406501 None:intergenic 40.0%
GCCATCTGTTGAGAATATTG+AGG - chr7_4:55406613-55406632 Msa1163940:CDS 40.0%
CCCTCAATATTCTCAACAGA+TGG + chr7_4:55406617-55406636 None:intergenic 40.0%
AATAATATGCGTTCACTCCC+AGG - chr7_4:55406899-55406918 Msa1163940:CDS 40.0%
GAAAATTTCTGTGCAGCTTC+AGG + chr7_4:55406947-55406966 None:intergenic 40.0%
! TGCACAGAAATTTTCCCCTA+GGG - chr7_4:55406952-55406971 Msa1163940:CDS 40.0%
ATTTGGGTGAACCCAAAGTA+TGG - chr7_4:55407157-55407176 Msa1163940:CDS 40.0%
AGTCAACAGAACATCTTCCT+GGG + chr7_4:55407191-55407210 None:intergenic 40.0%
AAGTCAACAGAACATCTTCC+TGG + chr7_4:55407192-55407211 None:intergenic 40.0%
GCCAGATATGCATGATAATC+TGG - chr7_4:55407266-55407285 Msa1163940:CDS 40.0%
GTTGGGACATAATGACTGAA+AGG + chr7_4:55407495-55407514 None:intergenic 40.0%
! GCACTCAAAAAAGGAAGCAT+AGG - chr7_4:55407727-55407746 Msa1163940:intron 40.0%
GTTCGGTTTACATATGCATG+AGG + chr7_4:55407861-55407880 None:intergenic 40.0%
CAAACAATGAGCAGAAGGTT+CGG + chr7_4:55407878-55407897 None:intergenic 40.0%
AATGAACATGGCATTGTGCA+AGG + chr7_4:55407913-55407932 None:intergenic 40.0%
TGCTCTCTGTTGGATATTGA+TGG + chr7_4:55408044-55408063 None:intergenic 40.0%
AACGCACTCAATTCTATGTG+TGG - chr7_4:55408083-55408102 Msa1163940:intron 40.0%
ACGCACTCAATTCTATGTGT+GGG - chr7_4:55408084-55408103 Msa1163940:intron 40.0%
! GTTATCCTGCTCAGTATTGA+AGG - chr7_4:55408213-55408232 Msa1163940:intron 40.0%
TACTGAATACACCGATACAC+TGG + chr7_4:55408250-55408269 None:intergenic 40.0%
AAGACAAGAACAAACTCACG+AGG + chr7_4:55408274-55408293 None:intergenic 40.0%
! GAGTTTGTTCTTGTCTTTCC+TGG - chr7_4:55408277-55408296 Msa1163940:intron 40.0%
TTGTGGTTTCAACTGTTCTG+AGG - chr7_4:55408321-55408340 Msa1163940:intron 40.0%
TTCATACGACAAGCTGTTAC+TGG - chr7_4:55408429-55408448 Msa1163940:intron 40.0%
TCATACGACAAGCTGTTACT+GGG - chr7_4:55408430-55408449 Msa1163940:intron 40.0%
!! ACATATATCGGTTTCCCATC+GGG + chr7_4:55408479-55408498 None:intergenic 40.0%
TTCATTCTTGCGTATGGATC+TGG - chr7_4:55408758-55408777 Msa1163940:intron 40.0%
TCAGGAGTGAAAGTTTGAAG+AGG - chr7_4:55408856-55408875 Msa1163940:intron 40.0%
ACTTCACTGCCAGTTGTAAA+AGG - chr7_4:55408922-55408941 Msa1163940:CDS 40.0%
CTTCACTGCCAGTTGTAAAA+GGG - chr7_4:55408923-55408942 Msa1163940:CDS 40.0%
! GCTACATTCCCTTTTACAAC+TGG + chr7_4:55408934-55408953 None:intergenic 40.0%
GATTTATTCCTGTCTGCTGT+TGG - chr7_4:55408966-55408985 Msa1163940:CDS 40.0%
!! AACAGCTTTGTTCTTGTCCT+TGG - chr7_4:55409033-55409052 Msa1163940:CDS 40.0%
!! GTTCTTCATCAAGCTTTGGA+TGG - chr7_4:55409101-55409120 Msa1163940:intron 40.0%
AAATGGGCCAAAGAAGATCT+TGG - chr7_4:55409143-55409162 Msa1163940:intron 40.0%
!!! GGTTTGTTTTGATTTCTGGG+AGG + chr7_4:55409189-55409208 None:intergenic 40.0%
!!! CTGGGGTTTGTTTTGATTTC+TGG + chr7_4:55409193-55409212 None:intergenic 40.0%
GACTACTGTGAGTACTACTA+GGG + chr7_4:55409367-55409386 None:intergenic 40.0%
!!! TTTTTTGGGTGAATGGCGTA+CGG + chr7_4:55409389-55409408 None:intergenic 40.0%
! ATGCTTGTTGCAGCAGATTT+GGG + chr7_4:55409476-55409495 None:intergenic 40.0%
! AATGCTTGTTGCAGCAGATT+TGG + chr7_4:55409477-55409496 None:intergenic 40.0%
AAATCTGCTGCAACAAGCAT+TGG - chr7_4:55409476-55409495 Msa1163940:intron 40.0%
GGTAAAGGAAGTAATTCTGC+TGG - chr7_4:55409497-55409516 Msa1163940:intron 40.0%
AAACCTGATAGCAAGGCAAT+TGG - chr7_4:55409524-55409543 Msa1163940:intron 40.0%
AACCTGATAGCAAGGCAATT+GGG - chr7_4:55409525-55409544 Msa1163940:intron 40.0%
GAAGTTTCTTCATCAACTCC+AGG - chr7_4:55409593-55409612 Msa1163940:intron 40.0%
TAGTTCTTCAGAATCCGATG+AGG - chr7_4:55409667-55409686 Msa1163940:intron 40.0%
AGCTGTAAAGTACAGGATTC+AGG + chr7_4:55409893-55409912 None:intergenic 40.0%
ACAGAAGCAGAACTGGTATA+AGG + chr7_4:55409920-55409939 None:intergenic 40.0%
CAATGGACCTGGAATACAAT+TGG + chr7_4:55409946-55409965 None:intergenic 40.0%
TAACGGGGAAGAAACAACAA+TGG + chr7_4:55409963-55409982 None:intergenic 40.0%
TCTCACCGAACTAAACTAGC+CGG - chr7_4:55403540-55403559 Msa1163940:three_prime_UTR 45.0%
ACTAAACTAGCCGGAAATCG+CGG - chr7_4:55403549-55403568 Msa1163940:three_prime_UTR 45.0%
! TCACTGTATGTGTTGGTGGA+CGG + chr7_4:55403593-55403612 None:intergenic 45.0%
AGTGACAAAGTCTGCCCTTA+AGG - chr7_4:55403608-55403627 Msa1163940:three_prime_UTR 45.0%
! TCTGCCCTTAAGGTTTTCCA+GGG - chr7_4:55403618-55403637 Msa1163940:three_prime_UTR 45.0%
GTTGCCCTGGAAAACCTTAA+GGG + chr7_4:55403625-55403644 None:intergenic 45.0%
CCTACCTGTGTTGTCAATGT+CGG + chr7_4:55403693-55403712 None:intergenic 45.0%
GTGACACTTAACATGAACGG+AGG + chr7_4:55404038-55404057 None:intergenic 45.0%
CATCTGTGTTGTGTTGTGCA+TGG - chr7_4:55404057-55404076 Msa1163940:CDS 45.0%
GATGTTAGGGATGCAAAACC+AGG + chr7_4:55404385-55404404 None:intergenic 45.0%
GTTTAGTCGATGTGGGGATT+GGG + chr7_4:55404444-55404463 None:intergenic 45.0%
TCTCAGGTTTAGTCGATGTG+GGG + chr7_4:55404450-55404469 None:intergenic 45.0%
CATCTCAGGTTTAGTCGATG+TGG + chr7_4:55404452-55404471 None:intergenic 45.0%
! CACATCGACTAAACCTGAGA+TGG - chr7_4:55404450-55404469 Msa1163940:CDS 45.0%
TCGACTAAACCTGAGATGGA+TGG - chr7_4:55404454-55404473 Msa1163940:CDS 45.0%
!! GAAGTATTGCCATCCATCTC+AGG + chr7_4:55404466-55404485 None:intergenic 45.0%
CTCTGGTCGGATATTATCCA+TGG + chr7_4:55404514-55404533 None:intergenic 45.0%
! CCTCAGTTTTACACTTGCTC+TGG + chr7_4:55404531-55404550 None:intergenic 45.0%
CCAGAGCAAGTGTAAAACTG+AGG - chr7_4:55404528-55404547 Msa1163940:CDS 45.0%
ATGTGCTTGTGTGATGTGTC+TGG - chr7_4:55404896-55404915 Msa1163940:CDS 45.0%
!! GTTAGTCTAAGAGCGTTGTC+AGG - chr7_4:55405403-55405422 Msa1163940:intron 45.0%
AACACTTTGTAGGGGGTTTC+TGG + chr7_4:55405725-55405744 None:intergenic 45.0%
GGAAGAGAACACTTTGTAGG+GGG + chr7_4:55405732-55405751 None:intergenic 45.0%
ACTTCTCTTCTTGCATCCTC+AGG + chr7_4:55405903-55405922 None:intergenic 45.0%
GGATGCAAGAAGAGAAGTTC+TGG - chr7_4:55405905-55405924 Msa1163940:intron 45.0%
TAGGTACCTCTTCTGTTGGA+CGG + chr7_4:55405947-55405966 None:intergenic 45.0%
TGCTATCACGCTTAAGTGGT+AGG + chr7_4:55405966-55405985 None:intergenic 45.0%
AGCTAGTAGGAGGGACAATA+CGG + chr7_4:55406208-55406227 None:intergenic 45.0%
AGCCAGACATCAACAGCAAT+GGG - chr7_4:55406589-55406608 Msa1163940:CDS 45.0%
GCAGAGAACCTAGAACAATG+TGG + chr7_4:55406768-55406787 None:intergenic 45.0%
GGATCAGAAATCGCTGGAAT+TGG + chr7_4:55406830-55406849 None:intergenic 45.0%
TTCAGAGGATCAGAAATCGC+TGG + chr7_4:55406836-55406855 None:intergenic 45.0%
AGCGATTTCTGATCCTCTGA+AGG - chr7_4:55406835-55406854 Msa1163940:CDS 45.0%
GGATAATTGCATGCCTTCAG+AGG + chr7_4:55406851-55406870 None:intergenic 45.0%
CAAAGGAAAGAAGGGAACCT+GGG + chr7_4:55406919-55406938 None:intergenic 45.0%
TCAAAGGAAAGAAGGGAACC+TGG + chr7_4:55406920-55406939 None:intergenic 45.0%
AGGGCTGTCAAAGGAAAGAA+GGG + chr7_4:55406927-55406946 None:intergenic 45.0%
! CTGCACAGAAATTTTCCCCT+AGG - chr7_4:55406951-55406970 Msa1163940:CDS 45.0%
! ATTTTCCCCTAGGGTACATG+TGG - chr7_4:55406961-55406980 Msa1163940:CDS 45.0%
! TTTTCCCCTAGGGTACATGT+GGG - chr7_4:55406962-55406981 Msa1163940:CDS 45.0%
ACATTCCCACATGTACCCTA+GGG + chr7_4:55406970-55406989 None:intergenic 45.0%
! TGTGCTTTTCACCTCTCAGA+TGG - chr7_4:55406987-55407006 Msa1163940:CDS 45.0%
! GTGCTTTTCACCTCTCAGAT+GGG - chr7_4:55406988-55407007 Msa1163940:CDS 45.0%
AATGGCATTACCCATCTGAG+AGG + chr7_4:55407001-55407020 None:intergenic 45.0%
GGTGAACCCAAAGTATGGTA+TGG - chr7_4:55407162-55407181 Msa1163940:CDS 45.0%
GGGACACCATACCATACTTT+GGG + chr7_4:55407171-55407190 None:intergenic 45.0%
TGGGACACCATACCATACTT+TGG + chr7_4:55407172-55407191 None:intergenic 45.0%
AAAGTATGGTATGGTGTCCC+AGG - chr7_4:55407171-55407190 Msa1163940:CDS 45.0%
GGGCAATGAGCACTCAAAAA+AGG - chr7_4:55407718-55407737 Msa1163940:CDS 45.0%
AGGGTCAAACAATGAGCAGA+AGG + chr7_4:55407883-55407902 None:intergenic 45.0%
TTCTGCTCATTGTTTGACCC+TGG - chr7_4:55407882-55407901 Msa1163940:intron 45.0%
! CATTGTGCAAGGCATTACCA+GGG + chr7_4:55407902-55407921 None:intergenic 45.0%
! GCGGGTCTTGTAAATGAACA+TGG + chr7_4:55407925-55407944 None:intergenic 45.0%
! TGCTCAGTATTGAAGGGAGA+GGG - chr7_4:55408220-55408239 Msa1163940:intron 45.0%
! GAGAGGGTATACCAGTGTAT+CGG - chr7_4:55408236-55408255 Msa1163940:intron 45.0%
! CAAGTTTTGCTCCTCTTGAG+TGG - chr7_4:55408347-55408366 Msa1163940:intron 45.0%
ACAAACTTGTCATCGGAGCA+CGG + chr7_4:55408996-55409015 None:intergenic 45.0%
CTTTGTTCTTGTCCTTGGAC+AGG - chr7_4:55409038-55409057 Msa1163940:CDS 45.0%
GGAGGTTCTTCATCAAGCTT+TGG - chr7_4:55409097-55409116 Msa1163940:intron 45.0%
! TTGATTTCTGGGAGGCAACT+GGG + chr7_4:55409181-55409200 None:intergenic 45.0%
! TTTGATTTCTGGGAGGCAAC+TGG + chr7_4:55409182-55409201 None:intergenic 45.0%
GCAGGCAACACCAAATTCTT+TGG - chr7_4:55409301-55409320 Msa1163940:intron 45.0%
GGCAACACCAAATTCTTTGG+TGG - chr7_4:55409304-55409323 Msa1163940:intron 45.0%
GGACTACTGTGAGTACTACT+AGG + chr7_4:55409368-55409387 None:intergenic 45.0%
!! GCTGCAACAAGCATTGGTAA+AGG - chr7_4:55409482-55409501 Msa1163940:intron 45.0%
TGGGATCAAACCTGATAGCA+AGG - chr7_4:55409517-55409536 Msa1163940:intron 45.0%
ACCTGATAGCAAGGCAATTG+GGG - chr7_4:55409526-55409545 Msa1163940:intron 45.0%
AAAGACAAGAAACGTGAGCC+TGG + chr7_4:55409614-55409633 None:intergenic 45.0%
AGGCGAAAGCTGTAAAGTAC+AGG + chr7_4:55409900-55409919 None:intergenic 45.0%
CTGTGAGCCAATTGTATTCC+AGG - chr7_4:55409936-55409955 Msa1163940:CDS 45.0%
GGAAGAAACAACAATGGACC+TGG + chr7_4:55409957-55409976 None:intergenic 45.0%
!! TTAAATATAAAAAAACAAAT+GGG + chr7_4:55407364-55407383 None:intergenic 5.0%
! TGTATGTGTTGGTGGACGGA+CGG + chr7_4:55403589-55403608 None:intergenic 50.0%
! GTCTGCCCTTAAGGTTTTCC+AGG - chr7_4:55403617-55403636 Msa1163940:three_prime_UTR 50.0%
CGTTGCCCTGGAAAACCTTA+AGG + chr7_4:55403626-55403645 None:intergenic 50.0%
! TGCACCGACATTGACAACAC+AGG - chr7_4:55403686-55403705 Msa1163940:three_prime_UTR 50.0%
CCGACATTGACAACACAGGT+AGG - chr7_4:55403690-55403709 Msa1163940:three_prime_UTR 50.0%
! GGCTTTTGCTACAGCGATGA+TGG - chr7_4:55404300-55404319 Msa1163940:CDS 50.0%
! AGATTTTCCTCGATTCCGCC+TGG - chr7_4:55404364-55404383 Msa1163940:CDS 50.0%
GTTAGGGATGCAAAACCAGG+CGG + chr7_4:55404382-55404401 None:intergenic 50.0%
GGTTTAGTCGATGTGGGGAT+TGG + chr7_4:55404445-55404464 None:intergenic 50.0%
AGATTTGTGCACTACGGCCA+TGG - chr7_4:55404494-55404513 Msa1163940:CDS 50.0%
ATTGATATGTCCTCAGGCGG+TGG - chr7_4:55404760-55404779 Msa1163940:intron 50.0%
TTGATATGTCCTCAGGCGGT+GGG - chr7_4:55404761-55404780 Msa1163940:intron 50.0%
!!! TTTTAGTTTCCCACCGCCTG+AGG + chr7_4:55404773-55404792 None:intergenic 50.0%
GTGTGATGTGTCTGGTGATC+TGG - chr7_4:55404904-55404923 Msa1163940:CDS 50.0%
TGTGTCTGGTGATCTGGCAT+AGG - chr7_4:55404910-55404929 Msa1163940:CDS 50.0%
! TCTGGAACCAGGTAACAGCA+AGG - chr7_4:55405871-55405890 Msa1163940:intron 50.0%
GTGGTAGGTACCTCTTCTGT+TGG + chr7_4:55405951-55405970 None:intergenic 50.0%
GTATTGTCCCTCCTACTAGC+TGG - chr7_4:55406207-55406226 Msa1163940:CDS 50.0%
GCACCAAGTTCAGTATGCAC+CGG - chr7_4:55406307-55406326 Msa1163940:CDS 50.0%
CTTCCGGTGCATACTGAACT+TGG + chr7_4:55406313-55406332 None:intergenic 50.0%
GATGAAAGTAGCCACGGACA+AGG - chr7_4:55406379-55406398 Msa1163940:intron 50.0%
!!! GTACTTTTAGGACCAGGCTC+AGG + chr7_4:55406413-55406432 None:intergenic 50.0%
! CTGAATTTAGGACCAGGCTC+AGG + chr7_4:55406476-55406495 None:intergenic 50.0%
CAGCCAGACATCAACAGCAA+TGG - chr7_4:55406588-55406607 Msa1163940:CDS 50.0%
! CTCCCATTGCTGTTGATGTC+TGG + chr7_4:55406594-55406613 None:intergenic 50.0%
GGTTCTCTGCTGTGACACTT+TGG - chr7_4:55406778-55406797 Msa1163940:intron 50.0%
TCTCTGCTGTGACACTTTGG+AGG - chr7_4:55406781-55406800 Msa1163940:intron 50.0%
!! GAGGCTGGAGATTTTAGCAG+TGG - chr7_4:55406800-55406819 Msa1163940:CDS 50.0%
CAGGGCTGTCAAAGGAAAGA+AGG + chr7_4:55406928-55406947 None:intergenic 50.0%
CATTCCCACATGTACCCTAG+GGG + chr7_4:55406969-55406988 None:intergenic 50.0%
CACATTCCCACATGTACCCT+AGG + chr7_4:55406971-55406990 None:intergenic 50.0%
GGAGTGCGAGATATGTATGC+AGG - chr7_4:55407240-55407259 Msa1163940:CDS 50.0%
! TCGATGGATTCCGACTCTGT+TGG - chr7_4:55407447-55407466 Msa1163940:intron 50.0%
! GCATTGTGCAAGGCATTACC+AGG + chr7_4:55407903-55407922 None:intergenic 50.0%
CTCTCCCTTCAATACTGAGC+AGG + chr7_4:55408221-55408240 None:intergenic 50.0%
! CTGCTCAGTATTGAAGGGAG+AGG - chr7_4:55408219-55408238 Msa1163940:intron 50.0%
CCATGAAGCAACCACTCAAG+AGG + chr7_4:55408361-55408380 None:intergenic 50.0%
CCTCTTGAGTGGTTGCTTCA+TGG - chr7_4:55408358-55408377 Msa1163940:intron 50.0%
CCTGATACGAGACTACACAG+AGG + chr7_4:55408841-55408860 None:intergenic 50.0%
CCTCTGTGTAGTCTCGTATC+AGG - chr7_4:55408838-55408857 Msa1163940:intron 50.0%
AGGAGAATTCTGCCTGTCCA+AGG + chr7_4:55409053-55409072 None:intergenic 50.0%
GTGGAAACAGCGTAAATCGC+AGG - chr7_4:55409283-55409302 Msa1163940:intron 50.0%
GGTGGAGAAACAGAGCGAAA+TGG - chr7_4:55409322-55409341 Msa1163940:intron 50.0%
AGTACTACTAGGGATCCGCT+TGG + chr7_4:55409357-55409376 None:intergenic 50.0%
! TCCCCAATTGCCTTGCTATC+AGG + chr7_4:55409530-55409549 None:intergenic 50.0%
TTGGCTCACAGAAGCAGAAC+TGG + chr7_4:55409927-55409946 None:intergenic 50.0%
GGAACACTTGCCGCGATTTC+CGG + chr7_4:55403562-55403581 None:intergenic 55.0%
TGCAAAACCAGGCGGAATCG+AGG + chr7_4:55404374-55404393 None:intergenic 55.0%
GGAACCAGGTAACAGCAAGG+TGG - chr7_4:55405874-55405893 Msa1163940:intron 55.0%
GCAAGCATACGTTCCGAAGC+AGG - chr7_4:55406167-55406186 Msa1163940:intron 55.0%
CGTTCCGAAGCAGGACCTTA+TGG - chr7_4:55406176-55406195 Msa1163940:intron 55.0%
GCGGTTTCCAGCTAGTAGGA+GGG + chr7_4:55406217-55406236 None:intergenic 55.0%
CATGGCGGTTTCCAGCTAGT+AGG + chr7_4:55406221-55406240 None:intergenic 55.0%
! TTTAGGACCAGGCTCAGGCT+CGG + chr7_4:55406408-55406427 None:intergenic 55.0%
! TGCTGTGACACTTTGGAGGC+TGG - chr7_4:55406785-55406804 Msa1163940:intron 55.0%
TGCAGCTTCAGGGCTGTCAA+AGG + chr7_4:55406936-55406955 None:intergenic 55.0%
AGCTGTTACTGGGAGCAGCT+AGG - chr7_4:55408440-55408459 Msa1163940:intron 55.0%
GCTGTTACTGGGAGCAGCTA+GGG - chr7_4:55408441-55408460 Msa1163940:intron 55.0%
ACGGACAACCAACAGCAGAC+AGG + chr7_4:55408977-55408996 None:intergenic 55.0%
CGCGCGATGCATACAACAAG+TGG - chr7_4:55409264-55409283 Msa1163940:intron 55.0%
AAATGGCCTCCCAAGCCAAG+CGG - chr7_4:55409339-55409358 Msa1163940:intron 55.0%
ACTAGGGATCCGCTTGGCTT+GGG + chr7_4:55409351-55409370 None:intergenic 55.0%
TACTAGGGATCCGCTTGGCT+TGG + chr7_4:55409352-55409371 None:intergenic 55.0%
! ATGTGTTGGTGGACGGACGG+AGG + chr7_4:55403586-55403605 None:intergenic 60.0%
TGCTGCGACGCGGTTATCTG+CGG + chr7_4:55403649-55403668 None:intergenic 60.0%
! AGCTCTGATCTGCTGCGACG+CGG + chr7_4:55403659-55403678 None:intergenic 60.0%
!! GACGCCACCTTGCTGTTACC+TGG + chr7_4:55405881-55405900 None:intergenic 60.0%
AACAGCAAGGTGGCGTCCTG+AGG - chr7_4:55405884-55405903 Msa1163940:intron 60.0%
GGCGGTTTCCAGCTAGTAGG+AGG + chr7_4:55406218-55406237 None:intergenic 60.0%
TTAGGACCAGGCTCAGGCTC+GGG + chr7_4:55406407-55406426 None:intergenic 60.0%
TGTGACAAGGAGCCTGAGCC+TGG - chr7_4:55406461-55406480 Msa1163940:CDS 60.0%
GAGCAGCTAGGGAAGCTGTG+AGG - chr7_4:55408452-55408471 Msa1163940:intron 60.0%
GGAAGCTGTGAGGACCCGAT+GGG - chr7_4:55408462-55408481 Msa1163940:intron 60.0%
!! TCGCGCGCCGACTGCAATAT+AGG + chr7_4:55409251-55409270 None:intergenic 60.0%
! TGTTGGTGGACGGACGGAGG+AGG + chr7_4:55403583-55403602 None:intergenic 65.0%
GGTTATCTGCGGCGTTGCCC+TGG + chr7_4:55403638-55403657 None:intergenic 65.0%
GGGAAGCTGTGAGGACCCGA+TGG - chr7_4:55408461-55408480 Msa1163940:intron 65.0%
!! AGGGATCCGCTTGGCTTGGG+AGG + chr7_4:55409348-55409367 None:intergenic 65.0%
AGGCTCGGGCTCCTTGTCCG+TGG + chr7_4:55406393-55406412 None:intergenic 70.0%
AAGGAGCCCGAGCCTGAGCC+TGG - chr7_4:55406398-55406417 Msa1163940:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55403477 55409989 55403477 ID=Msa1163940;Name=Msa1163940
chr7_4 mRNA 55403477 55409989 55403477 ID=Msa1163940-mRNA-1;Parent=Msa1163940;Name=Msa1163940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.87|0.77|1|0.87|0.88|9|295|921
chr7_4 exon 55403477 55404617 55403477 ID=Msa1163940-mRNA-1:exon:16203;Parent=Msa1163940-mRNA-1
chr7_4 exon 55404893 55405261 55404893 ID=Msa1163940-mRNA-1:exon:16202;Parent=Msa1163940-mRNA-1
chr7_4 exon 55406179 55406349 55406179 ID=Msa1163940-mRNA-1:exon:16201;Parent=Msa1163940-mRNA-1
chr7_4 exon 55406457 55406687 55406457 ID=Msa1163940-mRNA-1:exon:16200;Parent=Msa1163940-mRNA-1
chr7_4 exon 55406787 55407326 55406787 ID=Msa1163940-mRNA-1:exon:16199;Parent=Msa1163940-mRNA-1
chr7_4 exon 55407507 55407584 55407507 ID=Msa1163940-mRNA-1:exon:16198;Parent=Msa1163940-mRNA-1
chr7_4 exon 55407669 55407740 55407669 ID=Msa1163940-mRNA-1:exon:16197;Parent=Msa1163940-mRNA-1
chr7_4 exon 55408881 55409108 55408881 ID=Msa1163940-mRNA-1:exon:16196;Parent=Msa1163940-mRNA-1
chr7_4 exon 55409759 55409989 55409759 ID=Msa1163940-mRNA-1:exon:16195;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55409759 55409989 55409759 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55408881 55409108 55408881 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55407669 55407740 55407669 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55407507 55407584 55407507 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55406787 55407326 55406787 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55406457 55406687 55406457 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55406179 55406349 55406179 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55404893 55405261 55404893 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 CDS 55403772 55404617 55403772 ID=Msa1163940-mRNA-1:cds;Parent=Msa1163940-mRNA-1
chr7_4 three_prime_UTR 55403477 55403771 55403477 ID=Msa1163940-mRNA-1:three_prime_utr;Parent=Msa1163940-mRNA-1
Gene Sequence

>Msa1163940

ATGAAGAGGCCCATCAAATTTAGACAACAGCAGCTCCATCAAACACACAAAAAAAAAACGAAGTCTCACCGAACTAAACTAGCCGGAAATCGCGGCAAGTGTTCCTCCTCCGTCCGTCCACCAACACATACAGTGACAAAGTCTGCCCTTAAGGTTTTCCAGGGCAACGCCGCAGATAACCGCGTCGCAGCAGATCAGAGCTTCGCTTCTGCACCGACATTGACAACACAGAAGATGAGATTTTCCTCGATTCCGCCTGGTTTTGCATCCCTAACATCTTTTTATCTAAAAAAGGATGACAATGTTAAGTCGGACCCAATCCCCACATCGACTAAACCTGAGATGGATGGCAATACTTCTAATAAACAGATTTGTGCACTACGGCCATGGATAATATCCGACCAGAGCAAGTGTAAAACTGAGGAATCTCGCACTGAGCATCCTCCTATGACTAAATTGAAACCCCCTACAAAGTGTTCTCTTCCAAAAGGGACCAAATATGGATGTCCAAAATGCAGTAATTGTTTTAAGGTAACAGCAAGGTGGCGTCCTGAGGATGCAAGAAGAGAAGTTCTGGAAGAAGCTCCTATTTTCCGTCCAACAGAAGAGGAATTCAAAGACACGATTAACTATATTGCAAGCATACGTTCCGAAGCAGGACCTTATGGAATTTGCCGTATTGTCCCTCCTACTAGCTGGAAACCGCCATGTACTCTTGAAAAAAAGAATGTATGGGAAAACTCTGAATTTATTGCTCAAATTCAGCGAATTGATGGGCACCAAGTTCAGTATGCACCGGAAGTTATGACTAGCTCTCATGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGCCACGGACAAGGAGCCCGAGCCTGAGCCTGGTCCTAAAAGTACTTCAACTAATAATGGGAAGGTTAAAGACTGTGACAAGGAGCCTGAGCCTGGTCCTAAATTCAGTCTCAAAACTTTTAAGAAATTGGCAGATGAATTCAAGATCCAGTACTTCAACTATAAGGATAAGAATAAGATTATGGGTTCTGGTAAAAATTCAGCCAGACATCAACAGCAATGGGAGCCATCTGTTGAGAATATTGAGGGTGAATACGGACGAATTGCTCAAAATCCAACTGATGAAATTGAGGTTCTCTGCTGTGACACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAGCGATTTCTGATCCTCTGAAGGCATGCAATTATCCTGAATATTTAAAATCTGGATGGAACTTAAATAATATGCGTTCACTCCCAGGTTCCCTTCTTTCCTTTGACAGCCCTGAAGCTGCACAGAAATTTTCCCCTAGGGTACATGTGGGAATGTGCTTTTCACCTCTCAGATGGAAAGTTGAAGAGCACCAATTATACTCATTATATTACATGCATTTGGGTGAACCCAAAGTATGGTATGGTGTCCCAGGAAGATGTTCTGTTGACTTTGAAACAATTTGGAAGAAGTATCTCGTTGGAGTGCGAGATATGTATGCAGGACAGCCAGATATGCATGATAATCTGGTTATGCAGTTATCCTGCTCAGTATTGAAGGGAGAGGGTATACCAGTGTATCGGTGTATTCAGTATCCTCGTGAGTTTGTTCTTGTCTTTCCTGGAACATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAGGCAGCAAGTTTTGCTCCTCTTGAGTGGTTGCTTCATGGACAGAATGTTGTAGACCTATATAGTGAACAGAAGAGAAAAACTTTAATTTCATACGACAAGCTGTTACTGGGAGCAGCTAGGGAAGCTGTGAGGACCCGATGGGAAACCGATATATGTATGAAGAGCACACCCGACAACATAACATGTAAAGATGCCTATCAAAGAAATGGGATCTTGACAAAAGCTTTTAATTCTCGTATCAGGAGTGAAAGTTTGAAGAGGAAATTTATTTCCACTTCTTTGAAGTCACAAAAGATGGATGAAAACTTCACTGCCAGTTGTAAAAGGGAATGTAGCGTATGTCTGCGTGATTTATTCCTGTCTGCTGTTGGTTGTCCGTGCTCCGATGACAAGTTTGTGTGTCTTGATCATGCAAAACAGCTTTGTTCTTGTCCTTGGACAGGCAGAATTCTCCTTTACCGTTATGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAAGATCTTGGTTTAACTGTGCGCCCAGTTGCCTCCCAGAAATCAAAACAAACCCCAGAAAAAGTAAATGATTCAGAAGACTCGATAAAAGAACCTATATTGCAGTCGGCGCGCGATGCATACAACAAGTGGAAACAGCGTAAATCGCAGGCAACACCAAATTCTTTGGTGGAGAAACAGAGCGAAATGGCCTCCCAAGCCAAGCGGATCCCTAGTAGTACTCACAGTAGTCCGTACGCCATTCACCCAAAAAAGAACACAACTTTACTTCATTCAGCAATATCAAATGAGGTCAAAGCTAAAGAGAAAATGGTGGGGCCCAAATCTGCTGCAACAAGCATTGGTAAAGGAAGTAATTCTGCTGGGATCAAACCTGATAGCAAGGCAATTGGGGATAAGCTCACAATTTCAAAGAAAGTAGGAGACCCAAAAGTTTCTGAAGTTTCTTCATCAACTCCAGGCTCACGTTTCTTGTCTTTACTACAAGAGAACATTTGGATTGATGTTTCATCTAGTTCTTCAGAATCCGATGAGGACTAG
Protein sequence

>Msa1163940

MKRPIKFRQQQLHQTHKKKTKSHRTKLAGNRGKCSSSVRPPTHTVTKSALKVFQGNAADNRVAADQSFASAPTLTTQKMRFSSIPPGFASLTSFYLKKDDNVKSDPIPTSTKPEMDGNTSNKQICALRPWIISDQSKCKTEESRTEHPPMTKLKPPTKCSLPKGTKYGCPKCSNCFKVTARWRPEDARREVLEEAPIFRPTEEEFKDTINYIASIRSEAGPYGICRIVPPTSWKPPCTLEKKNVWENSEFIAQIQRIDGHQVQYAPEVMTSSHDTTETKRRKVMKVATDKEPEPEPGPKSTSTNNGKVKDCDKEPEPGPKFSLKTFKKLADEFKIQYFNYKDKNKIMGSGKNSARHQQQWEPSVENIEGEYGRIAQNPTDEIEVLCCDTLEAGDFSSGFPIPAISDPLKACNYPEYLKSGWNLNNMRSLPGSLLSFDSPEAAQKFSPRVHVGMCFSPLRWKVEEHQLYSLYYMHLGEPKVWYGVPGRCSVDFETIWKKYLVGVRDMYAGQPDMHDNLVMQLSCSVLKGEGIPVYRCIQYPREFVLVFPGTYHSGFDCGFNCSEAASFAPLEWLLHGQNVVDLYSEQKRKTLISYDKLLLGAAREAVRTRWETDICMKSTPDNITCKDAYQRNGILTKAFNSRIRSESLKRKFISTSLKSQKMDENFTASCKRECSVCLRDLFLSAVGCPCSDDKFVCLDHAKQLCSCPWTGRILLYRYEISELEVLHQALDGKLSAVYKWAKEDLGLTVRPVASQKSKQTPEKVNDSEDSIKEPILQSARDAYNKWKQRKSQATPNSLVEKQSEMASQAKRIPSSTHSSPYAIHPKKNTTLLHSAISNEVKAKEKMVGPKSAATSIGKGSNSAGIKPDSKAIGDKLTISKKVGDPKVSEVSSSTPGSRFLSLLQENIWIDVSSSSSESDED*