AlfalfaGEDB | Msa1164000

M. sativa cultivar zhongmu-4 / Msa1164000

KEGG: K08790|K20069
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164000	XP_039683380.1	93.123	538	6	1	1	507	1	538	0.0	1034

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164000	sp\|Q9Y2H1\|ST38L_HUMAN	51.816	413	186	4	47	455	44	447	6.36e-145	427

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164000	A0A072U4A3	93.123	538	6	1	1	507	1	538	0.0	1034

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1036890	Msa1164000	0.926961	2.280731e-91	-8.615850e-47
Msa1077320	Msa1164000	0.859606	3.682733e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164000	MtrunA17_Chr7g0261491	86.828	577	6	3	1	507	1	577	0.0	1011
Msa1164000	MtrunA17_Chr1g0183651	78.545	536	83	2	1	505	1	535	0.0	847
Msa1164000	MtrunA17_Chr1g0187581	71.128	523	115	5	1	491	1	519	0.0	763
Msa1164000	MtrunA17_Chr1g0167351	70.000	520	111	6	1	487	1	508	0.0	716
Msa1164000	MtrunA17_Chr1g0167311	70.742	458	121	6	49	504	75	521	0.0	677
Msa1164000	MtrunA17_Chr3g0135951	65.217	437	143	1	49	476	54	490	0.0	605
Msa1164000	MtrunA17_Chr2g0299781	66.029	418	133	1	49	457	73	490	0.0	583
Msa1164000	MtrunA17_Chr1g0153321	62.273	440	156	4	49	484	68	501	0.0	570
Msa1164000	MtrunA17_Chr6g0478601	38.992	377	212	6	41	415	68	428	7.21e-84	269
Msa1164000	MtrunA17_Chr4g0018201	42.598	331	170	6	79	404	749	1064	3.99e-78	265

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1164000	AT2G20470.3	74.038	520	95	6	1	484	1	516	770
Msa1164000	AT2G20470.2	74.088	521	95	6	1	485	1	517	769
Msa1164000	AT2G20470.1	74.088	521	95	6	1	485	1	517	769
Msa1164000	AT1G03920.1	71.857	533	93	5	1	481	1	528	763
Msa1164000	AT1G03920.3	71.857	533	93	5	1	481	1	528	763
Msa1164000	AT3G23310.1	70.455	528	121	4	1	494	1	527	753
Msa1164000	AT4G14350.2	79.167	456	91	3	49	503	79	531	753
Msa1164000	AT4G14350.1	79.167	456	91	3	49	503	79	531	753
Msa1164000	AT4G14350.4	79.167	456	91	3	49	503	79	531	753
Msa1164000	AT4G14350.3	79.167	456	91	3	49	503	79	531	752

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Find 113 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGAGATGCTTCGAAG+AGG	0.639262	7_4:+55511230	Msa1164000:CDS
AAATGGATTCAGCGAGGAGT+TGG	0.488752	7_4:+55509712	None:intergenic
AAATGGTGCAGTTGAAATAA+AGG	0.409697	7_4:+55513522	Msa1164000:CDS
AACAAGAACAGTTGGAAAAC+TGG	0.344829	7_4:+55512041	Msa1164000:CDS
AACCAAAGATTGGGGTCAAA+TGG	0.441725	7_4:+55513505	Msa1164000:CDS
AACCTTCTGCTTGGTAACAT+TGG	0.513014	7_4:-55509844	None:intergenic
AACTTATTACTTGATAAATA+TGG	0.236706	7_4:+55511884	Msa1164000:CDS
AAGAAGGATGATGGTAATGG+CGG	0.583438	7_4:+55509780	Msa1164000:CDS
AAGCTTACTTATAAGATCTG+TGG	0.631155	7_4:-55513470	None:intergenic
AAGGCATAAAATGGGTGTTG+AGG	0.559338	7_4:+55510971	Msa1164000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTCAAGAGAGAAAAGAA+CGG	+	chr7_4:55509916-55509935	Msa1164000:intron	30.0%
CAAAACAAACATGCATGAAA+TGG	-	chr7_4:55509948-55509967	None:intergenic	30.0%
AGAATCAATTCCAGATGATT+CGG	-	chr7_4:55509979-55509998	None:intergenic	30.0%
TAGATTGCACGTTAACTTTA+AGG	-	chr7_4:55510044-55510063	None:intergenic	30.0%
CAACTATTCTTGGAAAATTC+CGG	-	chr7_4:55510489-55510508	None:intergenic	30.0%
GGTATTATTATTGTGGATGA+TGG	+	chr7_4:55510654-55510673	Msa1164000:intron	30.0%
TGTTTCTCCTACATAAAATC+GGG	-	chr7_4:55511540-55511559	None:intergenic	30.0%
ATATGGACACTTGAAACTAT+CGG	+	chr7_4:55511901-55511920	Msa1164000:CDS	30.0%
AGTTCATTACTATTAAGTCG+TGG	+	chr7_4:55512088-55512107	Msa1164000:intron	30.0%
AATATAATCTGGTGTACCAA+CGG	-	chr7_4:55512249-55512268	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	55509714	55516702	55509714	ID=Msa1164000;Name=Msa1164000
chr7_4	mRNA	55509714	55516702	55509714	ID=Msa1164000-mRNA-1;Parent=Msa1164000;Name=Msa1164000-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|1\|0.91\|0.92\|13\|0\|507
chr7_4	exon	55509714	55509863	55509714	ID=Msa1164000-mRNA-1:exon:16230;Parent=Msa1164000-mRNA-1
chr7_4	exon	55510882	55511037	55510882	ID=Msa1164000-mRNA-1:exon:16231;Parent=Msa1164000-mRNA-1
chr7_4	exon	55511173	55511256	55511173	ID=Msa1164000-mRNA-1:exon:16232;Parent=Msa1164000-mRNA-1
chr7_4	exon	55511362	55511603	55511362	ID=Msa1164000-mRNA-1:exon:16233;Parent=Msa1164000-mRNA-1
chr7_4	exon	55511868	55512084	55511868	ID=Msa1164000-mRNA-1:exon:16234;Parent=Msa1164000-mRNA-1
chr7_4	exon	55512236	55512315	55512236	ID=Msa1164000-mRNA-1:exon:16235;Parent=Msa1164000-mRNA-1
chr7_4	exon	55512843	55512927	55512843	ID=Msa1164000-mRNA-1:exon:16236;Parent=Msa1164000-mRNA-1
chr7_4	exon	55513412	55513543	55513412	ID=Msa1164000-mRNA-1:exon:16237;Parent=Msa1164000-mRNA-1
chr7_4	exon	55513634	55513747	55513634	ID=Msa1164000-mRNA-1:exon:16238;Parent=Msa1164000-mRNA-1
chr7_4	exon	55513847	55513897	55513847	ID=Msa1164000-mRNA-1:exon:16239;Parent=Msa1164000-mRNA-1
chr7_4	exon	55514855	55514939	55514855	ID=Msa1164000-mRNA-1:exon:16240;Parent=Msa1164000-mRNA-1
chr7_4	exon	55516471	55516527	55516471	ID=Msa1164000-mRNA-1:exon:16241;Parent=Msa1164000-mRNA-1
chr7_4	exon	55516632	55516702	55516632	ID=Msa1164000-mRNA-1:exon:16242;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55509714	55509863	55509714	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55510882	55511037	55510882	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55511173	55511256	55511173	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55511362	55511603	55511362	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55511868	55512084	55511868	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55512236	55512315	55512236	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55512843	55512927	55512843	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55513412	55513543	55513412	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55513634	55513747	55513634	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55513847	55513897	55513847	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55514855	55514939	55514855	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55516471	55516527	55516471	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1
chr7_4	CDS	55516632	55516702	55516632	ID=Msa1164000-mRNA-1:cds;Parent=Msa1164000-mRNA-1

Gene Sequence

>Msa1164000

ATGGATTCAGCGAGGAGTTGGTTTCATAAGTTTCAACCGCGAGATAGACTGAGAGCTTCAACGAGGAAGAAGGATGATGGTAATGGCGGAATAGATGACGCCAATGCGGTTGTTGATGAGACGGATCTTTCCAATGTTACCAAGCAGAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAAGATCAAAATAACCTACTTAAATATTTAGCGAAGAAGGAAACTGAATATATGCGTCTTCAAAGGCATAAAATGGGTGTTGAGGATTTTGAGATGTTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGCAGGGAAAAGACTACAGATCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAAGATGATGAGTATTTATATCTTATTATGGAGTATCTACCGGGAGGGGATATGATGACTCTTCTTATGAGAAAGGATACATTAACCGAAGACGAAGCCCGATTTTATGTAGGAGAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAACCTGATAACTTATTACTTGATAAATATGGACACTTGAAACTATCGGATTTTGGACTATGTAAACCGTTAGACTGTAGTGTACTTGAAGAATCAGACTTTTCTAATTGCCAGAATGCAAATGGAACTGCACAAAATGATGATCGTGCATTTCCGAAACGTACACAACAAGAACAGTTGGAAAACTGGCAGAAAAACAGGAGGACACTTGCTTATTCTACCGTTGGTACACCAGATTATATTGCTCCAGAAGTTTTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCATTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAGTCTCACTTGAAGTTTCCCGAAGAAGCAAGGCTATCTCCGGAGGCCACAGATCTTATAAGTAAGCTTTTGTGTAATGTCAACCAAAGATTGGGGTCAAATGGTGCAGTTGAAATAAAGTCTCATCCATTCTTTGAAGGTGTTCAATGGGAAAAGTTGTATCAAATGGAAGCTGCATTTACTCCTGAAGTCAACGACGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACAGCCAGACACATTCATCATCAAGATCAGGTGGTCCATGGAGAAAGATGCTTTCATCGAAGGACATAAATTTTGTTGGATATACATACAAGAACTTTGAAATTGTTAATGACTATCAAGTTCCTGGGATGGCTGAGTTGAAGAAAACCTCCAAATCGAAGAGGAAGCCATCTGTCAAGTCGTTGTTTGATGGCGAGTTGGAGACTTCTGAGGTGTCTGATACTTCAGAAGTGTCTGCAAGCAATCCACCTACTAAATGA

Protein sequence

>Msa1164000

MDSARSWFHKFQPRDRLRASTRKKDDGNGGIDDANAVVDETDLSNVTKQKKLADADVSEEDQNNLLKYLAKKETEYMRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSVLEESDFSNCQNANGTAQNDDRAFPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEATDLISKLLCNVNQRLGSNGAVEIKSHPFFEGVQWEKLYQMEAAFTPEVNDELDTQNFEKFEESDSQTHSSSRSGGPWRKMLSSKDINFVGYTYKNFEIVNDYQVPGMAELKKTSKSKRKPSVKSLFDGELETSEVSDTSEVSASNPPTK*