Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164600 | XP_003625821.1 | 96.273 | 161 | 5 | 1 | 1 | 161 | 1 | 160 | 2.47e-108 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164600 | sp|Q8LCY2|ISAM2_ARATH | 61.875 | 160 | 58 | 2 | 1 | 160 | 1 | 157 | 1.69e-61 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164600 | G7KQU7 | 96.273 | 161 | 5 | 1 | 1 | 161 | 1 | 160 | 1.18e-108 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1164600 | Msa1397040 | 0.806696 | 7.255597e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164600 | MtrunA17_Chr7g0266291 | 96.273 | 161 | 5 | 1 | 1 | 161 | 1 | 160 | 2.27e-112 | 315 |
| Msa1164600 | MtrunA17_Chr1g0178671 | 35.714 | 84 | 53 | 1 | 77 | 160 | 44 | 126 | 2.05e-14 | 66.2 |
| Msa1164600 | MtrunA17_Chr8g0383271 | 33.333 | 105 | 65 | 3 | 52 | 154 | 70 | 171 | 2.58e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164600 | AT5G03905.1 | 61.875 | 160 | 58 | 2 | 1 | 160 | 1 | 157 | 1.72e-62 | 189 |
| Msa1164600 | AT5G03905.2 | 50.476 | 105 | 49 | 2 | 1 | 105 | 1 | 102 | 1.54e-24 | 92.0 |
| Msa1164600 | AT1G10500.1 | 33.333 | 126 | 73 | 5 | 39 | 157 | 55 | 176 | 5.55e-14 | 66.6 |
| Msa1164600 | AT2G16710.1 | 35.366 | 82 | 52 | 1 | 77 | 158 | 45 | 125 | 2.37e-13 | 63.9 |
| Msa1164600 | AT2G36260.1 | 38.272 | 81 | 48 | 2 | 77 | 157 | 28 | 106 | 5.43e-12 | 59.7 |
| Msa1164600 | AT2G16710.3 | 32.955 | 88 | 52 | 2 | 77 | 158 | 45 | 131 | 2.81e-11 | 58.5 |
Find 46 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCTGTTCTATTATCTTT+TGG | 0.239982 | 7_4:+56315830 | Msa1164600:three_prime_UTR |
| TGTAATGGTAATAAATTATC+AGG | 0.291250 | 7_4:+56315797 | Msa1164600:three_prime_UTR |
| CAGTTGTAAAAGTTCCTTCA+TGG | 0.367289 | 7_4:+56315591 | Msa1164600:CDS |
| TGAGAAGGAAGGAATTAAAC+TGG | 0.374459 | 7_4:+56313603 | Msa1164600:CDS |
| GTAGAAACCGGTGGATGTTC+AGG | 0.378607 | 7_4:+56313420 | Msa1164600:CDS |
| CTGCAACCACCAACTGCACT+TGG | 0.390122 | 7_4:-56315571 | None:intergenic |
| GGAACAGAAAATGAAGGAAT+TGG | 0.403267 | 7_4:+56313353 | Msa1164600:intron |
| GCGGTGGAGGAAAGTGAGGA+GGG | 0.446347 | 7_4:-56315643 | None:intergenic |
| GAAACAGTAGTTAGCTATCT+TGG | 0.449743 | 7_4:+56315615 | Msa1164600:exon |
| GCACCAAAAGATAATAGAAC+AGG | 0.462067 | 7_4:-56315833 | None:intergenic |
| CTTCGTTTAAGCGTAGAAAC+CGG | 0.462646 | 7_4:+56313408 | Msa1164600:CDS |
| ATGTGGACAGGTTCCACGTC+GGG | 0.463532 | 7_4:-56313010 | None:intergenic |
| ACAGAGTCAACTCAGATGAT+AGG | 0.477854 | 7_4:+56313469 | Msa1164600:CDS |
| GTAACATACAGTTGTTGTAA+TGG | 0.499420 | 7_4:+56315782 | Msa1164600:three_prime_UTR |
| AATCACACCATTGATGTCTC+AGG | 0.504098 | 7_4:-56312838 | None:intergenic |
| TCCACCGGATGATGATTCAC+TGG | 0.509565 | 7_4:-56313379 | None:intergenic |
| AGATGTGGCATGGTGAAGAA+TGG | 0.513237 | 7_4:-56312975 | None:intergenic |
| TGTCGAGGAGCTAATCCGTT+CGG | 0.527854 | 7_4:+56313675 | Msa1164600:CDS |
| AATAAACATTTGAGCGGTGG+AGG | 0.528089 | 7_4:-56315656 | None:intergenic |
| GGTTCCACGTCGGGAGAAGA+AGG | 0.530859 | 7_4:-56313001 | None:intergenic |
| TCGAAGACTCGCTCCATCGT+TGG | 0.532351 | 7_4:+56312889 | Msa1164600:CDS |
| ATTTCATACGACTTTGTGAA+AGG | 0.535942 | 7_4:+56313637 | Msa1164600:CDS |
| TTCACCTTCTTCTCCCGACG+TGG | 0.537237 | 7_4:+56312997 | Msa1164600:CDS |
| AGCGGTGGAGGAAAGTGAGG+AGG | 0.553032 | 7_4:-56315644 | None:intergenic |
| GATGCCAGTGAATCATCATC+CGG | 0.561795 | 7_4:+56313375 | Msa1164600:CDS |
| TGAAATCGTGCTGCCAACGA+TGG | 0.563513 | 7_4:-56312902 | None:intergenic |
| TAACTACTGTTTCACCATGA+AGG | 0.567622 | 7_4:-56315605 | None:intergenic |
| CGTTGGCAGCACGATTTCAA+CGG | 0.568585 | 7_4:+56312906 | Msa1164600:CDS |
| GAATGTGGAACAGAAAATGA+AGG | 0.569964 | 7_4:+56313347 | Msa1164600:intron |
| AGAAGATCCTGAGACATCAA+TGG | 0.572109 | 7_4:+56312831 | Msa1164600:five_prime_UTR |
| CATAGTATAATCTAGTTCGA+CGG | 0.575888 | 7_4:-56315679 | None:intergenic |
| TGCAACCACCAACTGCACTT+GGG | 0.581343 | 7_4:-56315570 | None:intergenic |
| CGGAATAAACATTTGAGCGG+TGG | 0.596422 | 7_4:-56315659 | None:intergenic |
| CTGAAATCCTGAACATCCAC+CGG | 0.596753 | 7_4:-56313427 | None:intergenic |
| CGGTGGAGGAAAGTGAGGAG+GGG | 0.602223 | 7_4:-56315642 | None:intergenic |
| ACGGAGAACCCAAGTGCAGT+TGG | 0.605079 | 7_4:+56315562 | Msa1164600:CDS |
| GAGAACCCAAGTGCAGTTGG+TGG | 0.609330 | 7_4:+56315565 | Msa1164600:CDS |
| CGCAACTGTTGATTATGTCG+AGG | 0.618120 | 7_4:+56313660 | Msa1164600:CDS |
| TTGAGCGGTGGAGGAAAGTG+AGG | 0.625815 | 7_4:-56315647 | None:intergenic |
| GACTTACTATGAAAGCCGAA+CGG | 0.642245 | 7_4:-56313690 | None:intergenic |
| CGTTTAAGCGTAGAAACCGG+TGG | 0.643374 | 7_4:+56313411 | Msa1164600:CDS |
| GGGAGAAGAAGGTGAAGATG+TGG | 0.644162 | 7_4:-56312990 | None:intergenic |
| AAGAAGGTGAAGATGTGGCA+TGG | 0.649445 | 7_4:-56312985 | None:intergenic |
| GCCAGTGAATCATCATCCGG+TGG | 0.654118 | 7_4:+56313378 | Msa1164600:CDS |
| CGACGGAATAAACATTTGAG+CGG | 0.683940 | 7_4:-56315662 | None:intergenic |
| TATGTGGACAGGTTCCACGT+CGG | 0.705696 | 7_4:-56313011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAATACATTTCAAAATT+TGG | + | chr7_4:56313113-56313132 | Msa1164600:intron | 15.0% |
| !! | ATCAATTACATTACATATAA+TGG | - | chr7_4:56313303-56313322 | None:intergenic | 15.0% |
| !! | TTATAATTTATAAAAGACAC+TGG | - | chr7_4:56313552-56313571 | None:intergenic | 15.0% |
| !!! | ACCTTTTTATAATTTTAGTA+TGG | + | chr7_4:56313817-56313836 | Msa1164600:intron | 15.0% |
| !! | ACCATACTAAAATTATAAAA+AGG | - | chr7_4:56313821-56313840 | None:intergenic | 15.0% |
| !!! | TTTCAATACCTTTTAATTTT+GGG | - | chr7_4:56315102-56315121 | None:intergenic | 15.0% |
| !!! | TTTTCAATACCTTTTAATTT+TGG | - | chr7_4:56315103-56315122 | None:intergenic | 15.0% |
| !! | TACATTTCAAAATTTGGATT+AGG | + | chr7_4:56313119-56313138 | Msa1164600:intron | 20.0% |
| !!! | ATTTCAGTATGCTTTTAATT+TGG | + | chr7_4:56313443-56313462 | Msa1164600:CDS | 20.0% |
| !! | TGAAAAAAATTTCTTGAACA+GGG | - | chr7_4:56314297-56314316 | None:intergenic | 20.0% |
| !! | TTGAAAAAAATTTCTTGAAC+AGG | - | chr7_4:56314298-56314317 | None:intergenic | 20.0% |
| !! | TTTCAAAAAAAAAAACAGAG+TGG | + | chr7_4:56314312-56314331 | Msa1164600:intron | 20.0% |
| !! | TTCAAAAAAAAAAACAGAGT+GGG | + | chr7_4:56314313-56314332 | Msa1164600:intron | 20.0% |
| !! | TTGTAAAATGTATATACTCA+TGG | - | chr7_4:56314365-56314384 | None:intergenic | 20.0% |
| !! | TAAAACTTAACAACATATTC+AGG | + | chr7_4:56314413-56314432 | Msa1164600:intron | 20.0% |
| !! | TTCATCCTCAAAAATTTATA+CGG | - | chr7_4:56314482-56314501 | None:intergenic | 20.0% |
| !! | ATATGAAACCAAAATGTATA+AGG | - | chr7_4:56314581-56314600 | None:intergenic | 20.0% |
| !!! | TTATTTTGGTTTGAACTTAA+TGG | - | chr7_4:56314740-56314759 | None:intergenic | 20.0% |
| !! | TACTTAATAACAAAAGCAAA+GGG | - | chr7_4:56315157-56315176 | None:intergenic | 20.0% |
| !! | ATACTTAATAACAAAAGCAA+AGG | - | chr7_4:56315158-56315177 | None:intergenic | 20.0% |
| !!! | ATCATTTTCGTAATATAAGA+AGG | + | chr7_4:56315292-56315311 | Msa1164600:intron | 20.0% |
| !! | TTTATAAGTTATGACATTGA+AGG | + | chr7_4:56315485-56315504 | Msa1164600:intron | 20.0% |
| !! | AAAATAAATGTAAGTTTGTC+TGG | - | chr7_4:56315523-56315542 | None:intergenic | 20.0% |
| !!! | ACAAACTTACATTTATTTTC+TGG | + | chr7_4:56315524-56315543 | Msa1164600:intron | 20.0% |
| !!! | AATCAATCAATTGTTTTTTG+AGG | - | chr7_4:56315721-56315740 | None:intergenic | 20.0% |
| !! | TGTAATGGTAATAAATTATC+AGG | + | chr7_4:56315797-56315816 | Msa1164600:three_prime_UTR | 20.0% |
| ! | AAAAAGAGCTTATAAGATTC+TGG | - | chr7_4:56312934-56312953 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTACAAACAAGT+TGG | - | chr7_4:56313327-56313346 | None:intergenic | 25.0% |
| ! | TTTGTACAACTTAATGAATG+TGG | + | chr7_4:56313332-56313351 | Msa1164600:intron | 25.0% |
| !!! | ATTTTAGTATGGTACTAATC+AGG | + | chr7_4:56313828-56313847 | Msa1164600:intron | 25.0% |
| ! | AAATTGTTAATGTACACTCA+TGG | - | chr7_4:56314197-56314216 | None:intergenic | 25.0% |
| ! | AGGTTCAGATTCAAAATATA+AGG | + | chr7_4:56314433-56314452 | Msa1164600:intron | 25.0% |
| ! | AAAACTTCAAACATTGAACA+GGG | - | chr7_4:56314459-56314478 | None:intergenic | 25.0% |
| !! | GTTTTCCGTATAAATTTTTG+AGG | + | chr7_4:56314474-56314493 | Msa1164600:intron | 25.0% |
| !!! | AAAAACCTAAAAGCATCTAA+AGG | - | chr7_4:56314551-56314570 | None:intergenic | 25.0% |
| ! | AAATTACAAAACTGACATGT+GGG | - | chr7_4:56314872-56314891 | None:intergenic | 25.0% |
| ! | TATGTTGCTCTACATAATTT+AGG | - | chr7_4:56314923-56314942 | None:intergenic | 25.0% |
| ! | TAAATTATGTAGAGCAACAT+AGG | + | chr7_4:56314922-56314941 | Msa1164600:intron | 25.0% |
| ! | CATTCTTTAATCAAAGTTCA+TGG | - | chr7_4:56314974-56314993 | None:intergenic | 25.0% |
| ! | CTATTTAGTTAGAGTAACAT+GGG | - | chr7_4:56315037-56315056 | None:intergenic | 25.0% |
| ! | TTAATCTCACATAAATAGAG+CGG | - | chr7_4:56315067-56315086 | None:intergenic | 25.0% |
| !! | AGTTTTCACCCAAAATTAAA+AGG | + | chr7_4:56315091-56315110 | Msa1164600:intron | 25.0% |
| !!! | TATTTTCTGGTTTCATTTTC+AGG | + | chr7_4:56315537-56315556 | Msa1164600:intron | 25.0% |
| ! | TCTCTCAATTGCTTGTTAAT+TGG | + | chr7_4:56313065-56313084 | Msa1164600:intron | 30.0% |
| TTATGACAGTTATGCAGATA+GGG | + | chr7_4:56313206-56313225 | Msa1164600:intron | 30.0% | |
| AGTCAGATTTCAATGTTGAT+AGG | + | chr7_4:56313507-56313526 | Msa1164600:intron | 30.0% | |
| ATTTCATACGACTTTGTGAA+AGG | + | chr7_4:56313637-56313656 | Msa1164600:CDS | 30.0% | |
| AAGAATGGGTATGTTATGTT+AGG | + | chr7_4:56314159-56314178 | Msa1164600:intron | 30.0% | |
| ! | AACCATATTCAAGTTCAGAT+TGG | + | chr7_4:56314253-56314272 | Msa1164600:intron | 30.0% |
| TTCCAATCTGAACTTGAATA+TGG | - | chr7_4:56314258-56314277 | None:intergenic | 30.0% | |
| ATTGGAATCCAAAATCAACA+AGG | + | chr7_4:56314271-56314290 | Msa1164600:intron | 30.0% | |
| GAAAACTTCAAACATTGAAC+AGG | - | chr7_4:56314460-56314479 | None:intergenic | 30.0% | |
| ! | TTACCATGCCTTATACATTT+TGG | + | chr7_4:56314570-56314589 | Msa1164600:intron | 30.0% |
| AAACCAAAATGTATAAGGCA+TGG | - | chr7_4:56314576-56314595 | None:intergenic | 30.0% | |
| !! | ATGTGTCATTTCTTGTTAAG+TGG | + | chr7_4:56314636-56314655 | Msa1164600:intron | 30.0% |
| !! | TAATGTTGGTTACATTTTCC+AGG | - | chr7_4:56314782-56314801 | None:intergenic | 30.0% |
| ! | GAAGCACTTTATTCTAATGT+TGG | - | chr7_4:56314796-56314815 | None:intergenic | 30.0% |
| CAAATTACAAAACTGACATG+TGG | - | chr7_4:56314873-56314892 | None:intergenic | 30.0% | |
| GCTATTTAGTTAGAGTAACA+TGG | - | chr7_4:56315038-56315057 | None:intergenic | 30.0% | |
| TACTCTAACTAAATAGCCTA+AGG | + | chr7_4:56315041-56315060 | Msa1164600:intron | 30.0% | |
| ! | CAATGATGTTTTGTGTTTGA+TGG | + | chr7_4:56315268-56315287 | Msa1164600:intron | 30.0% |
| ! | CATAGTATAATCTAGTTCGA+CGG | - | chr7_4:56315682-56315701 | None:intergenic | 30.0% |
| GTAACATACAGTTGTTGTAA+TGG | + | chr7_4:56315782-56315801 | Msa1164600:three_prime_UTR | 30.0% | |
| ! | TAGCCTGTTCTATTATCTTT+TGG | + | chr7_4:56315830-56315849 | Msa1164600:three_prime_UTR | 30.0% |
| !! | TTGGATTAGGTTTTCGTTGA+TGG | + | chr7_4:56313132-56313151 | Msa1164600:intron | 35.0% |
| ! | TATGAGAAGCATATGCGATA+AGG | - | chr7_4:56313159-56313178 | None:intergenic | 35.0% |
| GTTATGACAGTTATGCAGAT+AGG | + | chr7_4:56313205-56313224 | Msa1164600:intron | 35.0% | |
| GAATGTGGAACAGAAAATGA+AGG | + | chr7_4:56313347-56313366 | Msa1164600:intron | 35.0% | |
| GGAACAGAAAATGAAGGAAT+TGG | + | chr7_4:56313353-56313372 | Msa1164600:intron | 35.0% | |
| !! | TAAACGAAGCATTTTTCCAC+CGG | - | chr7_4:56313397-56313416 | None:intergenic | 35.0% |
| TTGAAATCTGACTATCCAAG+TGG | - | chr7_4:56313500-56313519 | None:intergenic | 35.0% | |
| !! | TATTGCCAGAGTTTTTGAGA+AGG | + | chr7_4:56313588-56313607 | Msa1164600:intron | 35.0% |
| TGAGAAGGAAGGAATTAAAC+TGG | + | chr7_4:56313603-56313622 | Msa1164600:CDS | 35.0% | |
| ATCAGGTAACGAAGTTTCTT+AGG | + | chr7_4:56313845-56313864 | Msa1164600:intron | 35.0% | |
| TCCTAAAATCTCAAGCTGAT+AGG | - | chr7_4:56313999-56314018 | None:intergenic | 35.0% | |
| !! | CTTGAGATTTTAGGAGAGTT+GGG | + | chr7_4:56314004-56314023 | Msa1164600:intron | 35.0% |
| TACCCATTCTTGTAAAGAGT+GGG | - | chr7_4:56314150-56314169 | None:intergenic | 35.0% | |
| ATACCCATTCTTGTAAAGAG+TGG | - | chr7_4:56314151-56314170 | None:intergenic | 35.0% | |
| ! | TGGACGATTTTATATCCCAA+CGG | - | chr7_4:56314345-56314364 | None:intergenic | 35.0% |
| GATGAACCTGTTGTATATAG+AGG | + | chr7_4:56314496-56314515 | Msa1164600:intron | 35.0% | |
| AAGTCACCTCTATATACAAC+AGG | - | chr7_4:56314505-56314524 | None:intergenic | 35.0% | |
| !! | ATCTAAAGGCATTGTTTGGA+TGG | - | chr7_4:56314537-56314556 | None:intergenic | 35.0% |
| !! | AAGCATCTAAAGGCATTGTT+TGG | - | chr7_4:56314541-56314560 | None:intergenic | 35.0% |
| ! | CAATGCCTTTAGATGCTTTT+AGG | + | chr7_4:56314543-56314562 | Msa1164600:intron | 35.0% |
| TAACAAGAAATGACACATGC+TGG | - | chr7_4:56314634-56314653 | None:intergenic | 35.0% | |
| AAGTGTGCCAAAAACCTAAA+CGG | - | chr7_4:56314717-56314736 | None:intergenic | 35.0% | |
| !!! | CTCTAGTGGTAGCTTTATTT+TGG | - | chr7_4:56314754-56314773 | None:intergenic | 35.0% |
| AAGTGCTTCTTGCAAAATTG+TGG | + | chr7_4:56314807-56314826 | Msa1164600:intron | 35.0% | |
| CATAGGTACTTCTGATCTTA+AGG | + | chr7_4:56314939-56314958 | Msa1164600:intron | 35.0% | |
| TCACATCGACATACAATCTA+AGG | - | chr7_4:56315371-56315390 | None:intergenic | 35.0% | |
| ACTGTGATATCCAATGGTAT+TGG | + | chr7_4:56315410-56315429 | Msa1164600:intron | 35.0% | |
| ! | GATATCCAATGGTATTGGAA+TGG | + | chr7_4:56315415-56315434 | Msa1164600:intron | 35.0% |
| ACATTCCATTCCAATACCAT+TGG | - | chr7_4:56315423-56315442 | None:intergenic | 35.0% | |
| CAGTTGTAAAAGTTCCTTCA+TGG | + | chr7_4:56315591-56315610 | Msa1164600:CDS | 35.0% | |
| TAACTACTGTTTCACCATGA+AGG | - | chr7_4:56315608-56315627 | None:intergenic | 35.0% | |
| GAAACAGTAGTTAGCTATCT+TGG | + | chr7_4:56315615-56315634 | Msa1164600:exon | 35.0% | |
| GCACCAAAAGATAATAGAAC+AGG | - | chr7_4:56315836-56315855 | None:intergenic | 35.0% | |
| AGAAGATCCTGAGACATCAA+TGG | + | chr7_4:56312831-56312850 | Msa1164600:five_prime_UTR | 40.0% | |
| AATCACACCATTGATGTCTC+AGG | - | chr7_4:56312841-56312860 | None:intergenic | 40.0% | |
| AGTTCATGTTGTACTGTACC+CGG | + | chr7_4:56313260-56313279 | Msa1164600:intron | 40.0% | |
| CTTCGTTTAAGCGTAGAAAC+CGG | + | chr7_4:56313408-56313427 | Msa1164600:CDS | 40.0% | |
| ACAGAGTCAACTCAGATGAT+AGG | + | chr7_4:56313469-56313488 | Msa1164600:CDS | 40.0% | |
| AGATGATAGGTACTACCACT+TGG | + | chr7_4:56313482-56313501 | Msa1164600:intron | 40.0% | |
| GACACTGGTGTATCAACATA+TGG | - | chr7_4:56313537-56313556 | None:intergenic | 40.0% | |
| TCCTTCCTTCTCAAAAACTC+TGG | - | chr7_4:56313596-56313615 | None:intergenic | 40.0% | |
| GACTTACTATGAAAGCCGAA+CGG | - | chr7_4:56313693-56313712 | None:intergenic | 40.0% | |
| ACTTGTAACCATGTGTATGC+TGG | + | chr7_4:56313719-56313738 | Msa1164600:intron | 40.0% | |
| AATCTCAAGCTGATAGGCAA+AGG | - | chr7_4:56313993-56314012 | None:intergenic | 40.0% | |
| ! | GCCTATCAGCTTGAGATTTT+AGG | + | chr7_4:56313995-56314014 | Msa1164600:intron | 40.0% |
| !! | GCTTGAGATTTTAGGAGAGT+TGG | + | chr7_4:56314003-56314022 | Msa1164600:intron | 40.0% |
| AAGCCCACTCTTTACAAGAA+TGG | + | chr7_4:56314144-56314163 | Msa1164600:intron | 40.0% | |
| AGCCCACTCTTTACAAGAAT+GGG | + | chr7_4:56314145-56314164 | Msa1164600:intron | 40.0% | |
| TTCAAAGCAAAAGTTCCGTC+AGG | - | chr7_4:56314678-56314697 | None:intergenic | 40.0% | |
| CCAAAAACCTAAACGGTGTT+GGG | - | chr7_4:56314710-56314729 | None:intergenic | 40.0% | |
| ! | TTTTCCAGGCATATCTCTAG+TGG | - | chr7_4:56314768-56314787 | None:intergenic | 40.0% |
| CTTGCAAAATTGTGGTCAAG+AGG | + | chr7_4:56314815-56314834 | Msa1164600:intron | 40.0% | |
| ATATCACCAAACAGTGGAGA+AGG | - | chr7_4:56315014-56315033 | None:intergenic | 40.0% | |
| CCAAATAAGTGAATCACAGC+AGG | - | chr7_4:56315206-56315225 | None:intergenic | 40.0% | |
| CCTGCTGTGATTCACTTATT+TGG | + | chr7_4:56315203-56315222 | Msa1164600:intron | 40.0% | |
| GATGCAACTGTGATATCCAA+TGG | + | chr7_4:56315404-56315423 | Msa1164600:intron | 40.0% | |
| !!! | CTGGTTTCATTTTCAGGTGA+CGG | + | chr7_4:56315543-56315562 | Msa1164600:intron | 40.0% |
| AATAAACATTTGAGCGGTGG+AGG | - | chr7_4:56315659-56315678 | None:intergenic | 40.0% | |
| CGACGGAATAAACATTTGAG+CGG | - | chr7_4:56315665-56315684 | None:intergenic | 40.0% | |
| AGATGTGGCATGGTGAAGAA+TGG | - | chr7_4:56312978-56312997 | None:intergenic | 45.0% | |
| AAGAAGGTGAAGATGTGGCA+TGG | - | chr7_4:56312988-56313007 | None:intergenic | 45.0% | |
| ! | CAGTTTTCGGTTATGTGGAC+AGG | - | chr7_4:56313025-56313044 | None:intergenic | 45.0% |
| ! | GAACGCAGTTTTCGGTTATG+TGG | - | chr7_4:56313030-56313049 | None:intergenic | 45.0% |
| ! | GCATACACGAACGCAGTTTT+CGG | - | chr7_4:56313038-56313057 | None:intergenic | 45.0% |
| GTTCATGTTGTACTGTACCC+GGG | + | chr7_4:56313261-56313280 | Msa1164600:intron | 45.0% | |
| GATGCCAGTGAATCATCATC+CGG | + | chr7_4:56313375-56313394 | Msa1164600:CDS | 45.0% | |
| CTGAAATCCTGAACATCCAC+CGG | - | chr7_4:56313430-56313449 | None:intergenic | 45.0% | |
| !! | GCCAGAGTTTTTGAGAAGGA+AGG | + | chr7_4:56313592-56313611 | Msa1164600:intron | 45.0% |
| ! | CGCAACTGTTGATTATGTCG+AGG | + | chr7_4:56313660-56313679 | Msa1164600:CDS | 45.0% |
| CACAAACACCAGCATACACA+TGG | - | chr7_4:56313730-56313749 | None:intergenic | 45.0% | |
| CATGTGTATGCTGGTGTTTG+TGG | + | chr7_4:56313728-56313747 | Msa1164600:intron | 45.0% | |
| TGCACAGGAATCACAGAGAA+AGG | - | chr7_4:56313785-56313804 | None:intergenic | 45.0% | |
| GATTCCTGTGCACTACAACA+TGG | + | chr7_4:56313793-56313812 | Msa1164600:intron | 45.0% | |
| !! | ATTTTAGGAGAGTTGGGCCT+TGG | + | chr7_4:56314010-56314029 | Msa1164600:intron | 45.0% |
| AATCCACTCTCCAGTTACCA+AGG | - | chr7_4:56314030-56314049 | None:intergenic | 45.0% | |
| !!! | GAACAGGGCCTTGTTGATTT+TGG | - | chr7_4:56314282-56314301 | None:intergenic | 45.0% |
| TGATGCAATTGCTCTCCTGA+CGG | + | chr7_4:56314660-56314679 | Msa1164600:intron | 45.0% | |
| !! | CCCAACACCGTTTAGGTTTT+TGG | + | chr7_4:56314707-56314726 | Msa1164600:intron | 45.0% |
| GCCAAAAACCTAAACGGTGT+TGG | - | chr7_4:56314711-56314730 | None:intergenic | 45.0% | |
| TTGACACCTTCTCCACTGTT+TGG | + | chr7_4:56315005-56315024 | Msa1164600:intron | 45.0% | |
| CATGGGATATCACCAAACAG+TGG | - | chr7_4:56315020-56315039 | None:intergenic | 45.0% | |
| CACATAAATAGAGCGGCCTT+AGG | - | chr7_4:56315060-56315079 | None:intergenic | 45.0% | |
| AAGTGAATCACAGCAGGCTA+TGG | - | chr7_4:56315200-56315219 | None:intergenic | 45.0% | |
| CATTAACACGCCCTTCAAAG+CGG | + | chr7_4:56315317-56315336 | Msa1164600:intron | 45.0% | |
| !! | TGCGTTTTGAACCAAGTTCG+AGG | + | chr7_4:56315344-56315363 | Msa1164600:intron | 45.0% |
| CAATCTAAGGACCTCGAACT+TGG | - | chr7_4:56315358-56315377 | None:intergenic | 45.0% | |
| TGTCATGAGTGTGCGAGAAA+AGG | + | chr7_4:56315440-56315459 | Msa1164600:intron | 45.0% | |
| GTCATGAGTGTGCGAGAAAA+GGG | + | chr7_4:56315441-56315460 | Msa1164600:intron | 45.0% | |
| CGGAATAAACATTTGAGCGG+TGG | - | chr7_4:56315662-56315681 | None:intergenic | 45.0% | |
| TGAAATCGTGCTGCCAACGA+TGG | - | chr7_4:56312905-56312924 | None:intergenic | 50.0% | |
| CGTTGGCAGCACGATTTCAA+CGG | + | chr7_4:56312906-56312925 | Msa1164600:CDS | 50.0% | |
| GGGAGAAGAAGGTGAAGATG+TGG | - | chr7_4:56312993-56313012 | None:intergenic | 50.0% | |
| TATGTGGACAGGTTCCACGT+CGG | - | chr7_4:56313014-56313033 | None:intergenic | 50.0% | |
| TGTTGTACTGTACCCGGGTT+AGG | + | chr7_4:56313266-56313285 | Msa1164600:intron | 50.0% | |
| GTACGCATAGTTCCTAACCC+GGG | - | chr7_4:56313281-56313300 | None:intergenic | 50.0% | |
| GGTACGCATAGTTCCTAACC+CGG | - | chr7_4:56313282-56313301 | None:intergenic | 50.0% | |
| TCCACCGGATGATGATTCAC+TGG | - | chr7_4:56313382-56313401 | None:intergenic | 50.0% | |
| CGTTTAAGCGTAGAAACCGG+TGG | + | chr7_4:56313411-56313430 | Msa1164600:CDS | 50.0% | |
| GTAGAAACCGGTGGATGTTC+AGG | + | chr7_4:56313420-56313439 | Msa1164600:CDS | 50.0% | |
| TGTCGAGGAGCTAATCCGTT+CGG | + | chr7_4:56313675-56313694 | Msa1164600:CDS | 50.0% | |
| GGTTCCATGTTGTAGTGCAC+AGG | - | chr7_4:56313800-56313819 | None:intergenic | 50.0% | |
| ACAGAGTGGGTATGTTCCGT+TGG | + | chr7_4:56314326-56314345 | Msa1164600:intron | 50.0% | |
| CAGAGTGGGTATGTTCCGTT+GGG | + | chr7_4:56314327-56314346 | Msa1164600:intron | 50.0% | |
| ACTCTCTCCCAACACCGTTT+AGG | + | chr7_4:56314700-56314719 | Msa1164600:intron | 50.0% | |
| GCTACCACTAGAGATATGCC+TGG | + | chr7_4:56314761-56314780 | Msa1164600:intron | 50.0% | |
| ACAAAACTGACATGTGGGCC+TGG | - | chr7_4:56314867-56314886 | None:intergenic | 50.0% | |
| !! | AACGCACATGCCGCTTTGAA+GGG | - | chr7_4:56315330-56315349 | None:intergenic | 50.0% |
| !! | AAACGCACATGCCGCTTTGA+AGG | - | chr7_4:56315331-56315350 | None:intergenic | 50.0% |
| TGCAACCACCAACTGCACTT+GGG | - | chr7_4:56315573-56315592 | None:intergenic | 50.0% | |
| TCGAAGACTCGCTCCATCGT+TGG | + | chr7_4:56312889-56312908 | Msa1164600:CDS | 55.0% | |
| TTCACCTTCTTCTCCCGACG+TGG | + | chr7_4:56312997-56313016 | Msa1164600:CDS | 55.0% | |
| ATGTGGACAGGTTCCACGTC+GGG | - | chr7_4:56313013-56313032 | None:intergenic | 55.0% | |
| GCCAGTGAATCATCATCCGG+TGG | + | chr7_4:56313378-56313397 | Msa1164600:CDS | 55.0% | |
| ! | GAGAGTTGGGCCTTGGTAAC+TGG | + | chr7_4:56314017-56314036 | Msa1164600:intron | 55.0% |
| GGTTTACGTTGCAGGGCTAC+AGG | - | chr7_4:56314846-56314865 | None:intergenic | 55.0% | |
| GTAGCCCTGCAACGTAAACC+AGG | + | chr7_4:56314846-56314865 | Msa1164600:intron | 55.0% | |
| TGGGCCTGGTTTACGTTGCA+GGG | - | chr7_4:56314853-56314872 | None:intergenic | 55.0% | |
| TGTGCGAGAAAAGGGTCGTG+TGG | + | chr7_4:56315449-56315468 | Msa1164600:intron | 55.0% | |
| ACGGAGAACCCAAGTGCAGT+TGG | + | chr7_4:56315562-56315581 | Msa1164600:CDS | 55.0% | |
| GAGAACCCAAGTGCAGTTGG+TGG | + | chr7_4:56315565-56315584 | Msa1164600:CDS | 55.0% | |
| CTGCAACCACCAACTGCACT+TGG | - | chr7_4:56315574-56315593 | None:intergenic | 55.0% | |
| TTGAGCGGTGGAGGAAAGTG+AGG | - | chr7_4:56315650-56315669 | None:intergenic | 55.0% | |
| GGTTCCACGTCGGGAGAAGA+AGG | - | chr7_4:56313004-56313023 | None:intergenic | 60.0% | |
| ! | GGGCCTTGGTAACTGGAGAG+TGG | + | chr7_4:56314024-56314043 | Msa1164600:intron | 60.0% |
| GTGGGCCTGGTTTACGTTGC+AGG | - | chr7_4:56314854-56314873 | None:intergenic | 60.0% | |
| CGGTGGAGGAAAGTGAGGAG+GGG | - | chr7_4:56315645-56315664 | None:intergenic | 60.0% | |
| GCGGTGGAGGAAAGTGAGGA+GGG | - | chr7_4:56315646-56315665 | None:intergenic | 60.0% | |
| AGCGGTGGAGGAAAGTGAGG+AGG | - | chr7_4:56315647-56315666 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56312809 | 56315871 | 56312809 | ID=Msa1164600;Name=Msa1164600 |
| chr7_4 | mRNA | 56312809 | 56315871 | 56312809 | ID=Msa1164600-mRNA-1;Parent=Msa1164600;Name=Msa1164600-mRNA-1;_AED=0.02;_eAED=0.02;_QI=63|1|1|1|1|1|4|247|161 |
| chr7_4 | exon | 56312809 | 56313051 | 56312809 | ID=Msa1164600-mRNA-1:exon:16767;Parent=Msa1164600-mRNA-1 |
| chr7_4 | exon | 56313360 | 56313490 | 56313360 | ID=Msa1164600-mRNA-1:exon:16768;Parent=Msa1164600-mRNA-1 |
| chr7_4 | exon | 56313597 | 56313705 | 56313597 | ID=Msa1164600-mRNA-1:exon:16769;Parent=Msa1164600-mRNA-1 |
| chr7_4 | exon | 56315559 | 56315871 | 56315559 | ID=Msa1164600-mRNA-1:exon:16770;Parent=Msa1164600-mRNA-1 |
| chr7_4 | five_prime_UTR | 56312809 | 56312871 | 56312809 | ID=Msa1164600-mRNA-1:five_prime_utr;Parent=Msa1164600-mRNA-1 |
| chr7_4 | CDS | 56312872 | 56313051 | 56312872 | ID=Msa1164600-mRNA-1:cds;Parent=Msa1164600-mRNA-1 |
| chr7_4 | CDS | 56313360 | 56313490 | 56313360 | ID=Msa1164600-mRNA-1:cds;Parent=Msa1164600-mRNA-1 |
| chr7_4 | CDS | 56313597 | 56313705 | 56313597 | ID=Msa1164600-mRNA-1:cds;Parent=Msa1164600-mRNA-1 |
| chr7_4 | CDS | 56315559 | 56315624 | 56315559 | ID=Msa1164600-mRNA-1:cds;Parent=Msa1164600-mRNA-1 |
| chr7_4 | three_prime_UTR | 56315625 | 56315871 | 56315625 | ID=Msa1164600-mRNA-1:three_prime_utr;Parent=Msa1164600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
