AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397040 MtrunA17_Chr3g0127401 99.221 385 3 0 1 385 1 385 0.0 785
Msa1397040 MtrunA17_Chr3g0127431 81.921 354 63 1 5 358 8 360 0.0 595
Msa1397040 MtrunA17_Chr1g0195741 51.211 289 133 3 47 328 905 1192 2.44e-91 298
Msa1397040 MtrunA17_Chr1g0195731 51.211 289 133 3 47 328 901 1188 7.66e-91 296
Msa1397040 MtrunA17_Chr8g0387641 55.378 251 110 2 63 312 503 752 3.70e-90 289
Msa1397040 MtrunA17_Chr3g0116131 52.290 262 124 1 43 303 864 1125 3.48e-87 286
Msa1397040 MtrunA17_Chr4g0038101 45.062 324 164 4 41 359 690 1004 1.54e-85 280
Msa1397040 MtrunA17_Chr5g0397121 53.600 250 114 2 63 311 495 743 2.18e-85 276
Msa1397040 MtrunA17_Chr6g0462581 53.629 248 112 3 63 309 482 727 5.49e-82 266
Msa1397040 MtrunA17_Chr1g0202371 43.505 331 155 4 63 364 379 706 1.12e-79 258
Msa1397040 MtrunA17_Chr1g0202381 43.675 332 154 5 63 364 450 778 1.45e-77 254
Msa1397040 MtrunA17_Chr1g0204031 51.613 248 118 2 63 309 539 785 7.17e-76 251
Msa1397040 MtrunA17_Chr7g0246111 41.924 291 155 6 40 318 162 450 2.42e-62 208
Msa1397040 MtrunA17_Chr6g0459561 41.852 270 148 6 80 344 381 646 1.00e-56 196
Msa1397040 MtrunA17_Chr4g0052271 39.350 277 152 7 80 345 118 389 2.04e-55 187
Msa1397040 MtrunA17_Chr6g0459541 38.667 300 140 9 80 344 41 331 1.53e-52 178
Msa1397040 MtrunA17_Chr4g0004121 37.736 265 150 5 81 332 242 504 2.56e-50 177
Msa1397040 MtrunA17_Chr2g0321241 40.435 230 130 5 80 306 131 356 3.80e-49 171
Msa1397040 MtrunA17_Chr4g0026631 40.435 230 130 5 80 306 126 351 7.36e-48 168
Msa1397040 MtrunA17_Chr6g0459551 36.545 301 145 10 80 344 101 391 3.62e-46 163
Msa1397040 MtrunA17_Chr3g0145011 38.525 244 142 4 67 305 125 365 5.03e-46 162
Msa1397040 MtrunA17_Chr3g0141901 38.115 244 143 4 67 305 122 362 1.41e-45 161
Msa1397040 MtrunA17_Chr1g0180791 40.000 235 131 5 77 306 200 429 3.12e-45 166
Msa1397040 MtrunA17_Chr1g0180791 35.547 256 149 6 80 325 477 726 2.03e-43 161
Msa1397040 MtrunA17_Chr7g0264521 39.394 231 131 4 80 306 205 430 2.27e-44 164
Msa1397040 MtrunA17_Chr7g0264521 35.606 264 153 7 80 333 478 734 8.65e-44 162
Msa1397040 MtrunA17_Chr2g0327121 36.255 251 146 5 80 322 479 723 3.78e-44 163
Msa1397040 MtrunA17_Chr2g0327121 39.301 229 134 3 80 306 206 431 7.30e-43 159
Msa1397040 MtrunA17_Chr4g0050561 39.316 234 131 5 80 306 155 384 7.84e-43 154
Msa1397040 MtrunA17_Chr8g0345461 39.056 233 130 6 80 305 164 391 4.76e-42 152
Msa1397040 MtrunA17_Chr6g0459531 34.926 272 137 7 80 344 66 304 2.58e-40 145
Msa1397040 MtrunA17_Chr1g0200081 38.627 233 130 7 80 305 174 400 2.17e-39 145
Msa1397040 MtrunA17_Chr1g0192151 37.500 232 131 7 82 305 168 393 1.55e-38 143
Msa1397040 MtrunA17_Chr4g0014731 37.339 233 130 7 82 305 169 394 2.14e-38 142
Msa1397040 MtrunA17_Chr7g0262801 37.391 230 134 5 83 306 189 414 4.86e-37 139
Msa1397040 MtrunA17_Chr1g0182711 36.957 230 135 5 83 306 190 415 6.90e-37 139
Msa1397040 MtrunA17_Chr7g0255901 33.803 284 159 10 36 311 611 873 7.80e-37 142
Msa1397040 MtrunA17_Chr3g0108321 44.324 185 93 5 80 258 158 338 2.27e-36 135
Msa1397040 MtrunA17_Chr7g0255721 34.335 233 140 6 81 306 685 911 1.00e-35 139
Msa1397040 MtrunA17_Chr7g0255721 32.889 225 123 7 120 326 422 636 6.83e-27 112
Msa1397040 MtrunA17_Chr7g0255641 33.906 233 141 6 81 306 658 884 7.84e-35 136
Msa1397040 MtrunA17_Chr7g0255641 30.800 250 158 8 86 331 401 639 1.13e-23 103
Msa1397040 MtrunA17_Chr2g0277831 35.685 241 144 6 83 317 245 480 1.10e-34 135
Msa1397040 MtrunA17_Chr2g0277831 30.043 233 156 4 80 308 532 761 2.06e-33 132
Msa1397040 MtrunA17_Chr7g0260601 37.815 238 126 8 81 305 240 468 1.77e-34 134
Msa1397040 MtrunA17_Chr4g0033451 37.295 244 138 8 74 306 371 610 2.23e-34 135
Msa1397040 MtrunA17_Chr7g0217421 37.768 233 130 6 81 305 39 264 7.21e-34 130
Msa1397040 MtrunA17_Chr6g0456351 36.752 234 140 4 76 305 312 541 5.59e-33 130
Msa1397040 MtrunA17_Chr4g0052411 36.017 236 136 6 78 305 226 454 6.13e-33 130
Msa1397040 MtrunA17_Chr7g0248361 38.494 239 123 10 81 305 192 420 6.81e-33 130
Msa1397040 MtrunA17_Chr2g0289231 31.615 291 177 8 80 357 296 577 1.06e-32 129
Msa1397040 MtrunA17_Chr7g0255651 35.021 237 150 3 81 314 282 517 1.22e-32 129
Msa1397040 MtrunA17_Chr7g0255651 33.790 219 131 7 94 305 30 241 1.17e-21 96.7
Msa1397040 MtrunA17_Chr4g0043381 32.342 269 173 6 83 348 839 1101 2.02e-32 129
Msa1397040 MtrunA17_Chr3g0143721 33.119 311 174 13 81 379 249 537 4.51e-32 127
Msa1397040 MtrunA17_Chr5g0432631 33.681 288 170 8 80 363 228 498 4.65e-32 128
Msa1397040 MtrunA17_Chr3g0135761 32.827 329 178 10 44 363 197 491 4.85e-32 127
Msa1397040 MtrunA17_Chr4g0031821 36.402 239 128 9 81 305 320 548 8.11e-32 127
Msa1397040 MtrunA17_Chr6g0476861 37.238 239 126 9 81 305 197 425 1.52e-31 126
Msa1397040 MtrunA17_Chr2g0297281 35.622 233 135 6 81 305 286 511 1.83e-31 126
Msa1397040 MtrunA17_Chr3g0135721 33.449 287 170 8 81 363 224 493 4.13e-31 125
Msa1397040 MtrunA17_Chr2g0316851 32.075 265 158 8 83 330 596 855 7.89e-31 124
Msa1397040 MtrunA17_Chr3g0086411 29.719 249 152 5 80 308 214 459 5.41e-30 120
Msa1397040 MtrunA17_Chr3g0086411 29.936 157 100 4 170 317 7 162 2.49e-12 68.2
Msa1397040 MtrunA17_Chr3g0094871 34.894 235 136 8 81 305 11 238 7.97e-30 119
Msa1397040 MtrunA17_Chr7g0255691 34.127 252 151 5 81 320 286 534 2.37e-29 119
Msa1397040 MtrunA17_Chr7g0255691 36.726 226 127 8 84 299 20 239 1.12e-27 114
Msa1397040 MtrunA17_Chr1g0158881 33.681 288 163 10 83 363 331 597 2.78e-29 119
Msa1397040 MtrunA17_Chr2g0327231 39.286 168 90 4 80 241 345 506 4.00e-29 118
Msa1397040 MtrunA17_Chr2g0327231 39.362 94 48 3 80 171 152 238 2.20e-11 65.1
Msa1397040 MtrunA17_Chr5g0429571 36.402 239 130 8 81 306 313 542 9.57e-29 118
Msa1397040 MtrunA17_Chr3g0104211 36.441 236 134 7 81 306 304 533 1.35e-28 117
Msa1397040 MtrunA17_Chr8g0362771 31.959 291 172 10 80 363 236 507 1.86e-28 117
Msa1397040 MtrunA17_Chr8g0388371 34.310 239 140 5 81 306 404 638 2.61e-28 117
Msa1397040 MtrunA17_Chr2g0331161 30.992 242 140 7 79 306 413 641 4.73e-28 116
Msa1397040 MtrunA17_Chr3g0086401 32.922 243 136 7 80 299 384 622 5.59e-28 115
Msa1397040 MtrunA17_Chr3g0086401 30.233 215 135 6 104 308 116 325 1.52e-20 93.6
Msa1397040 MtrunA17_Chr3g0129971 35.246 244 133 9 81 308 296 530 3.96e-27 113
Msa1397040 MtrunA17_Chr5g0432641 32.154 311 181 11 62 363 171 460 8.90e-27 112
Msa1397040 MtrunA17_Chr3g0135781 38.788 165 93 4 80 242 54 212 1.27e-22 94.7
Msa1397040 MtrunA17_Chr8g0357301 33.333 201 111 7 120 305 507 699 3.93e-22 98.6
Msa1397040 MtrunA17_Chr1g0190401 27.178 287 152 12 13 262 594 860 1.73e-18 87.8
Msa1397040 MtrunA17_Chr4g0047411 31.280 211 116 8 120 308 214 417 1.28e-17 84.7
Msa1397040 MtrunA17_Chr5g0404291 36.735 147 80 6 117 258 386 524 2.61e-15 77.8
Msa1397040 MtrunA17_Chr1g0168321 37.086 151 77 7 167 305 211 355 4.17e-15 76.6
Msa1397040 MtrunA17_Chr6g0450161 32.911 158 87 4 117 266 361 507 7.77e-15 76.3
Msa1397040 MtrunA17_Chr4g0062081 48.750 80 35 3 86 162 12 88 3.07e-14 68.2
Msa1397040 MtrunA17_Chr4g0039781 34.810 158 84 6 117 266 367 513 3.93e-14 73.9
Msa1397040 MtrunA17_Chr1g0204051 35.526 76 48 1 210 285 1 75 3.22e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397040 AT4G27680.1 75.711 387 92 1 1 385 1 387 0.0 607
Msa1397040 AT5G53540.1 71.762 386 106 2 3 385 6 391 0.0 571
Msa1397040 AT4G02480.1 54.373 263 118 2 47 308 927 1188 2.51e-91 298
Msa1397040 AT1G02890.1 52.593 270 127 1 45 313 905 1174 2.96e-91 298
Msa1397040 AT4G24860.4 53.025 281 126 2 59 333 768 1048 4.96e-90 293
Msa1397040 AT1G64110.2 54.980 251 111 2 63 312 500 749 7.22e-90 288
Msa1397040 AT1G64110.4 54.980 251 111 2 63 312 500 749 7.22e-90 288
Msa1397040 AT1G64110.5 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa1397040 AT1G64110.3 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa1397040 AT1G64110.1 54.980 251 111 2 63 312 495 744 7.96e-90 288
Msa1397040 AT4G24860.1 53.025 281 126 2 59 333 795 1075 8.26e-90 293
Msa1397040 AT4G24860.3 53.025 281 126 2 59 333 793 1073 8.51e-90 293
Msa1397040 AT4G24860.2 53.025 281 126 2 59 333 791 1071 9.41e-90 293
Msa1397040 AT3G19740.1 45.427 328 172 4 39 359 657 984 9.06e-86 280
Msa1397040 AT1G50140.2 51.953 256 122 1 60 314 668 923 6.31e-85 278
Msa1397040 AT1G50140.5 51.953 256 122 1 60 314 668 923 6.31e-85 278
Msa1397040 AT1G50140.3 51.953 256 122 1 60 314 690 945 7.37e-85 278
Msa1397040 AT1G50140.1 51.953 256 122 1 60 314 690 945 7.37e-85 278
Msa1397040 AT1G50140.4 51.953 256 122 1 60 314 690 945 7.37e-85 278
Msa1397040 AT5G52882.1 51.894 264 124 3 59 321 492 753 4.43e-84 273
Msa1397040 AT4G28000.3 49.825 285 133 4 63 346 499 774 1.48e-83 271
Msa1397040 AT4G28000.1 49.825 285 133 4 63 346 497 772 3.07e-83 271
Msa1397040 AT4G28000.2 49.825 285 133 4 63 346 499 774 3.67e-83 270
Msa1397040 AT1G62130.2 47.445 274 130 3 39 312 704 963 1.82e-72 244
Msa1397040 AT1G62130.1 47.445 274 130 3 39 312 711 970 2.04e-72 244
Msa1397040 AT1G02890.2 45.926 270 117 2 45 313 905 1146 6.68e-71 241
Msa1397040 AT2G45500.4 44.488 254 131 5 63 310 59 308 1.08e-64 210
Msa1397040 AT2G45500.3 44.488 254 131 5 63 310 59 308 1.08e-64 210
Msa1397040 AT2G45500.1 44.488 254 131 5 63 310 196 445 2.66e-63 211
Msa1397040 AT2G45500.2 44.488 254 131 5 63 310 192 441 3.01e-63 210
Msa1397040 AT2G45500.5 44.488 254 131 5 63 310 202 451 5.62e-63 210
Msa1397040 AT2G34560.1 36.741 313 173 8 38 339 66 364 8.23e-56 188
Msa1397040 AT3G27120.1 44.828 232 122 4 80 308 399 627 1.30e-55 194
Msa1397040 AT2G34560.2 36.741 313 173 8 38 339 75 373 1.50e-55 187
Msa1397040 AT1G80350.1 37.358 265 151 5 81 332 236 498 7.36e-50 176
Msa1397040 AT5G43010.1 38.934 244 141 4 67 305 122 362 2.86e-47 166
Msa1397040 AT1G45000.1 38.934 244 141 4 67 305 122 362 4.13e-47 166
Msa1397040 AT2G27600.1 34.589 292 154 7 80 338 128 415 1.38e-46 165
Msa1397040 AT3G09840.1 39.827 231 130 4 80 306 203 428 4.45e-45 166
Msa1397040 AT3G09840.1 35.019 257 150 6 80 325 476 726 2.43e-42 158
Msa1397040 AT5G03340.1 39.394 231 131 4 80 306 203 428 1.45e-44 164
Msa1397040 AT5G03340.1 36.905 252 141 6 80 319 476 721 1.74e-44 164
Msa1397040 AT3G53230.1 38.961 231 132 4 80 306 204 429 9.22e-44 162
Msa1397040 AT3G53230.1 35.918 245 143 5 80 316 477 715 2.27e-42 158
Msa1397040 AT5G19990.1 39.316 234 131 5 80 306 157 386 1.46e-42 154
Msa1397040 AT5G19990.3 39.316 234 131 5 80 306 157 386 1.46e-42 154
Msa1397040 AT5G20000.1 39.316 234 131 5 80 306 157 386 1.72e-42 154
Msa1397040 AT5G19990.2 39.316 234 131 5 80 306 99 328 1.77e-42 152
Msa1397040 AT1G53750.1 39.056 233 130 6 80 305 164 391 9.33e-42 152
Msa1397040 AT5G58290.1 37.768 233 135 5 80 306 151 379 4.96e-40 147
Msa1397040 AT1G53780.2 38.197 233 130 6 80 304 357 583 1.34e-38 146
Msa1397040 AT1G53780.3 38.197 233 130 6 80 304 335 561 1.34e-38 146
Msa1397040 AT1G53780.1 38.197 233 130 6 80 304 336 562 1.38e-38 146
Msa1397040 AT1G53780.4 38.197 233 130 6 80 304 336 562 1.38e-38 146
Msa1397040 AT3G05530.1 37.339 233 130 7 82 305 169 394 1.55e-38 143
Msa1397040 AT3G56690.1 35.714 238 142 6 81 312 721 953 1.45e-37 144
Msa1397040 AT3G56690.1 29.582 311 203 6 2 308 310 608 5.70e-35 137
Msa1397040 AT1G09100.1 36.910 233 131 7 82 305 168 393 2.33e-37 140
Msa1397040 AT1G03000.1 34.000 250 156 7 76 319 650 896 1.69e-36 141
Msa1397040 AT4G29040.1 36.522 230 136 5 83 306 187 412 3.54e-36 137
Msa1397040 AT2G20140.1 36.522 230 136 5 83 306 187 412 9.74e-36 136
Msa1397040 AT1G05910.1 36.864 236 136 7 80 306 377 608 7.32e-35 137
Msa1397040 AT5G15250.1 37.712 236 126 8 81 305 221 446 6.58e-34 133
Msa1397040 AT3G01610.2 33.610 241 149 5 80 315 524 758 1.56e-33 132
Msa1397040 AT3G01610.2 35.223 247 144 6 83 317 232 474 7.57e-33 130
Msa1397040 AT1G06430.1 37.288 236 133 6 78 305 214 442 1.57e-33 132
Msa1397040 AT1G06430.3 37.288 236 133 6 78 305 214 442 1.57e-33 132
Msa1397040 AT1G06430.2 37.288 236 133 6 78 305 214 442 1.57e-33 132
Msa1397040 AT3G01610.1 33.610 241 149 5 80 315 524 758 1.57e-33 132
Msa1397040 AT3G01610.1 35.223 247 144 6 83 317 232 474 8.16e-33 130
Msa1397040 AT2G30950.1 37.339 233 131 6 81 305 224 449 1.80e-33 132
Msa1397040 AT2G30950.2 37.339 233 131 6 81 305 224 449 1.80e-33 132
Msa1397040 AT2G30950.3 37.339 233 131 6 81 305 224 449 1.80e-33 132
Msa1397040 AT2G30950.4 37.339 233 131 6 81 305 228 453 1.89e-33 132
Msa1397040 AT5G42270.1 33.548 310 174 12 81 379 247 535 5.89e-33 130
Msa1397040 AT5G08470.1 33.086 269 171 6 83 348 843 1105 7.35e-33 131
Msa1397040 AT5G08470.3 33.086 269 171 6 83 348 834 1096 7.39e-33 130
Msa1397040 AT1G50250.1 33.548 310 174 12 81 379 259 547 1.41e-32 129
Msa1397040 AT2G29080.1 37.553 237 127 8 81 305 319 546 4.47e-32 128
Msa1397040 AT1G07510.1 36.820 239 127 9 81 305 324 552 1.05e-31 127
Msa1397040 AT3G02450.1 36.364 231 135 6 81 305 331 555 1.35e-31 126
Msa1397040 AT2G26140.1 33.798 287 169 8 81 363 224 493 1.72e-31 126
Msa1397040 AT2G03670.2 35.426 223 131 7 86 299 24 242 9.03e-31 122
Msa1397040 AT2G03670.2 36.842 114 71 1 81 194 283 395 1.76e-12 68.9
Msa1397040 AT5G58870.1 36.626 243 132 8 77 306 322 555 1.32e-30 124
Msa1397040 AT5G15250.2 34.483 261 123 9 81 305 221 469 1.73e-30 122
Msa1397040 AT4G04180.2 31.174 247 149 6 80 314 310 547 3.04e-30 122
Msa1397040 AT4G04180.1 31.174 247 149 6 80 314 315 552 3.17e-30 122
Msa1397040 AT2G03670.1 35.426 223 131 7 86 299 24 242 3.75e-30 122
Msa1397040 AT2G03670.1 32.174 230 151 3 81 306 283 511 2.52e-26 111
Msa1397040 AT5G53170.1 32.653 294 176 9 74 363 352 627 1.68e-29 120
Msa1397040 AT3G47060.1 34.959 246 138 8 81 313 322 558 8.19e-29 119
Msa1397040 AT4G23940.1 34.959 246 136 7 81 310 427 664 1.65e-28 118
Msa1397040 AT3G15120.1 31.667 240 147 7 83 308 718 954 2.96e-28 117
Msa1397040 AT3G15120.2 31.667 240 147 7 83 308 728 964 3.13e-28 117
Msa1397040 AT3G16290.1 30.992 242 140 7 79 306 405 633 1.10e-26 112
Msa1397040 AT1G45000.2 38.562 153 90 2 67 216 122 273 3.27e-26 107
Msa1397040 AT1G79560.3 35.644 202 107 7 120 306 527 720 9.55e-26 109
Msa1397040 AT1G79560.1 35.644 202 107 7 120 306 527 720 1.01e-25 109
Msa1397040 AT1G79560.2 35.644 202 107 7 120 306 527 720 1.06e-25 109
Msa1397040 AT5G64580.1 34.568 243 136 9 81 308 313 547 1.36e-25 109
Msa1397040 AT3G04340.1 31.658 199 117 8 73 262 776 964 6.68e-17 83.2
Msa1397040 AT4G04910.1 30.806 211 117 8 120 308 251 454 1.14e-16 82.4
Msa1397040 AT5G08470.2 34.161 161 100 5 83 242 843 998 1.49e-16 82.0
Msa1397040 AT5G16930.1 34.969 163 77 7 118 267 397 543 1.69e-14 75.5
Msa1397040 AT2G18330.1 32.877 146 87 4 117 258 383 521 2.20e-14 75.1
Msa1397040 AT3G03060.1 32.075 159 89 4 117 267 384 531 2.56e-14 75.1
Msa1397040 AT4G36580.1 32.877 146 87 4 117 258 380 518 1.81e-13 72.4

Find 135 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCAAGCCTTTGAAAT+TGG 0.177781 tig0022126:-2946 Msa1397040:CDS
ATATATCAGCCCTCTCTTTC+CGG 0.226986 tig0022126:+2914 None:intergenic
CAGGGAATTATCTAAGATTA+TGG 0.229656 tig0022126:-2260 Msa1397040:CDS
TATATTGAAGGTTATCTTAA+AGG 0.231299 tig0022126:-2896 Msa1397040:CDS
CAACACACTTACCAAGCTTT+TGG 0.251388 tig0022126:+6307 None:intergenic
ACCTTTGTCGCAGGCAGATT+TGG 0.252995 tig0022126:-2398 Msa1397040:CDS
AGTGTATAATAATACAAGTT+TGG 0.261791 tig0022126:+2125 None:intergenic
CTAGGGCGGCGCTAAGTTAC+TGG 0.265505 tig0022126:-7223 Msa1397040:CDS
ATGTAGAATTTGACTCTATT+GGG 0.269048 tig0022126:-6557 Msa1397040:CDS
CCCCAAACCATTTGCTCATC+AGG 0.271211 tig0022126:+6334 None:intergenic
ACCTGATGAGCAAATGGTTT+GGG 0.311167 tig0022126:-6335 Msa1397040:CDS
TTATGCAGTATTTCTCTAAT+AGG 0.315812 tig0022126:+2769 None:intergenic
AAGTAATTGCGGTTGCAATC+TGG 0.316109 tig0022126:+2166 None:intergenic
GATGTAGAATTTGACTCTAT+TGG 0.317232 tig0022126:-6558 Msa1397040:CDS
AAACTGAGTTCATGGCTCTA+TGG 0.320401 tig0022126:-3181 Msa1397040:CDS
ACATCAAGAACGTCGTTTCA+TGG 0.355841 tig0022126:-2316 Msa1397040:CDS
AAACATGAAAACTGAGTTCA+TGG 0.362291 tig0022126:-3189 Msa1397040:CDS
TACTTCATCGATGAATATAA+TGG 0.362913 tig0022126:+3259 None:intergenic
AATGGGTACCTCATAGGAAT+TGG 0.365618 tig0022126:+7091 None:intergenic
TTCTTCGATGATTCACGGTT+CGG 0.366779 tig0022126:+7170 None:intergenic
AAAACAAGTCTGGTCGTTGC+AGG 0.370845 tig0022126:+6487 None:intergenic
CTCAGGTTGAAGCTGCAATC+AGG 0.378795 tig0022126:-2279 Msa1397040:CDS
AAAGCTATTGCCAAGGAGTC+TGG 0.379922 tig0022126:-6387 Msa1397040:CDS
TTGTATGGACCTCCTGGCAC+TGG 0.386661 tig0022126:-6426 Msa1397040:CDS
TCTTCGATGATTCACGGTTC+GGG 0.387128 tig0022126:+7171 None:intergenic
ACGTCGTTTCATGGCGAGTC+AGG 0.388975 tig0022126:-2307 Msa1397040:CDS
TAGGAATTGGTTTGAATAAG+AGG 0.390998 tig0022126:+7104 None:intergenic
CAAACTTCTTGGACCACAAA+AGG 0.392804 tig0022126:-6457 Msa1397040:CDS
TGTAGAGAGTGCTCGGGTTA+TGG 0.397237 tig0022126:-3022 Msa1397040:intron
TTTAATCCTGAGCATCTACT+TGG 0.407390 tig0022126:+2224 None:intergenic
ATATTGAAGGTTATCTTAAA+GGG 0.410430 tig0022126:-2895 Msa1397040:CDS
TGCAACCGCAATTACTTCCT+TGG 0.410829 tig0022126:-2160 Msa1397040:three_prime_UTR
TCGAAATTTGAAGTTAAAGT+TGG 0.411898 tig0022126:+7327 None:intergenic
GTGTATAATAATACAAGTTT+GGG 0.426349 tig0022126:+2126 None:intergenic
AACCTGATGAGCAAATGGTT+TGG 0.428222 tig0022126:-6336 Msa1397040:CDS
AGGGAATTATCTAAGATTAT+GGG 0.432152 tig0022126:-2259 Msa1397040:CDS
AGTAATTGCGGTTGCAATCT+GGG 0.435060 tig0022126:+2167 None:intergenic
GTATCCAACCACCGAATTTG+TGG 0.435521 tig0022126:+7363 None:intergenic
AAACTTCTTGGACCACAAAA+GGG 0.435723 tig0022126:-6456 Msa1397040:CDS
GAGCCTTCTTCGATGATTCA+CGG 0.446293 tig0022126:+7165 None:intergenic
AATGCAGTATTATCTGTTGC+AGG 0.454403 tig0022126:-1921 Msa1397040:three_prime_UTR
TCTTTCGTTCGTTCGTTCAA+AGG 0.456972 tig0022126:-7300 Msa1397040:five_prime_UTR
TCCAAATCTGCCTGCGACAA+AGG 0.458633 tig0022126:+2397 None:intergenic
CTTTATTTATGATTGTTGTT+CGG 0.460836 tig0022126:-2017 Msa1397040:three_prime_UTR
ATGTCTTCCGCGAAGTAGAA+AGG 0.461125 tig0022126:+2368 None:intergenic
CACGGTTCGGGTCAAGATAA+CGG 0.463061 tig0022126:+7183 None:intergenic
GTTCTGTTGTATGGACCTCC+TGG 0.464854 tig0022126:-6432 Msa1397040:CDS
TTCGCGTAAGTTTCTGAGGT+GGG 0.468999 tig0022126:+7470 None:intergenic
CATGGTACAATATCAAAAGT+AGG 0.470098 tig0022126:+1969 None:intergenic
ATAGATTTCAGTTATATAGC+TGG 0.470990 tig0022126:-2853 Msa1397040:CDS
TCAGCCCTCTCTTTCCGGTC+TGG 0.471982 tig0022126:+2919 None:intergenic
TACTGCATAATGAGAAGAAA+GGG 0.472605 tig0022126:-2756 Msa1397040:CDS
TCACATCCAAGTAGATGCTC+AGG 0.475230 tig0022126:-2230 Msa1397040:CDS
TGGCGAGTCAGGTGATTCTC+AGG 0.479528 tig0022126:-2296 Msa1397040:CDS
AGTGGCTGCCGTATTTAGCT+TGG 0.481021 tig0022126:-3300 Msa1397040:CDS
TCTATTTGATCTTTGCAAGA+AGG 0.483151 tig0022126:-2803 Msa1397040:CDS
TATCAAACCTGATGAGCAAA+TGG 0.483375 tig0022126:-6341 Msa1397040:CDS
GTTGTTGTGTAGAGAGTGCT+CGG 0.484415 tig0022126:-3029 Msa1397040:intron
CCCTAGCCGCGTATAACAAC+AGG 0.485855 tig0022126:+7240 None:intergenic
GAAAACTGCTCCAGACTCCT+TGG 0.486780 tig0022126:+6377 None:intergenic
AATTCTACATCGATGTGGTC+AGG 0.489405 tig0022126:+6570 None:intergenic
GTTCGTTCGTTCAAAGGACA+TGG 0.493707 tig0022126:-7294 Msa1397040:exon
TATTCAAACCAATTCCTATG+AGG 0.495023 tig0022126:-7099 Msa1397040:intron
TGCATGAAATTCTGAGCTAA+AGG 0.497231 tig0022126:+2080 None:intergenic
TCTGCCTGCGACAAAGGTCT+AGG 0.503149 tig0022126:+2403 None:intergenic
ATACTGCATAATGAGAAGAA+AGG 0.503244 tig0022126:-2757 Msa1397040:CDS
AAAGAGATTGCTAAACGTCT+TGG 0.508962 tig0022126:-7131 Msa1397040:CDS
TTTGGGGATGCCCAAAAGCT+TGG 0.509153 tig0022126:-6318 Msa1397040:intron
TTGCCATGCGAAAACAAGTC+TGG 0.509217 tig0022126:+6477 None:intergenic
ATGGTACAATATCAAAAGTA+GGG 0.510191 tig0022126:+1970 None:intergenic
CAGACCACAAATTCGGTGGT+TGG 0.510204 tig0022126:-7367 Msa1397040:five_prime_UTR
GGCGCTAAGTTACTGGGTAT+TGG 0.511795 tig0022126:-7216 Msa1397040:CDS
AACTGAGTTCATGGCTCTAT+GGG 0.515199 tig0022126:-3180 Msa1397040:CDS
AAGTTACTGGGTATTGGTCA+CGG 0.526475 tig0022126:-7210 Msa1397040:CDS
GGGAATTATCTAAGATTATG+GGG 0.530906 tig0022126:-2258 Msa1397040:CDS
TATATAGCTGGTTTATGCAA+GGG 0.532236 tig0022126:-2841 Msa1397040:CDS
TTTATGAGCCAAGCTAAATA+CGG 0.532998 tig0022126:+3292 None:intergenic
AGAGAGGGCTGATATATTGA+AGG 0.534415 tig0022126:-2908 Msa1397040:CDS
TTCTGAGCTAAAGGCAACAC+TGG 0.534510 tig0022126:+2089 None:intergenic
GAACCGTGAATCATCGAAGA+AGG 0.537058 tig0022126:-7168 Msa1397040:CDS
TCCTTTCGCGTAAGTTTCTG+AGG 0.538081 tig0022126:+7466 None:intergenic
TTCTACTTCGCGGAAGACAT+CGG 0.539207 tig0022126:-2365 Msa1397040:CDS
AATTTGACTGCATCATATCA+TGG 0.539356 tig0022126:+1951 None:intergenic
GGTTTATGCAAGGGTTACAC+TGG 0.540877 tig0022126:-2832 Msa1397040:CDS
TGTCTTCCGCGAAGTAGAAA+GGG 0.540884 tig0022126:+2369 None:intergenic
GTCAGGATTTATAACATCAC+AGG 0.543896 tig0022126:+6587 None:intergenic
AGTTACTGGGTATTGGTCAC+GGG 0.546408 tig0022126:-7209 Msa1397040:CDS
TTGAAATTGGATATCCAGAC+CGG 0.547953 tig0022126:-2933 Msa1397040:CDS
TTATATAGCTGGTTTATGCA+AGG 0.548540 tig0022126:-2842 Msa1397040:CDS
GTCTGGATATCCAATTTCAA+AGG 0.556914 tig0022126:+2936 None:intergenic
TAAATAAAGTCTAGTATACA+TGG 0.557154 tig0022126:+2031 None:intergenic
TCAGGTTGAAGCTGCAATCA+GGG 0.557401 tig0022126:-2278 Msa1397040:CDS
TGTAGAATTTGACTCTATTG+GGG 0.558850 tig0022126:-6556 Msa1397040:CDS
ATTGCTTCATCAAGTTCTGA+AGG 0.564553 tig0022126:+2979 None:intergenic
CCTGTTGTTATACGCGGCTA+GGG 0.564962 tig0022126:-7240 Msa1397040:CDS
GGTTATCTTAAAGGGCGAGA+AGG 0.568954 tig0022126:-2887 Msa1397040:CDS
ACCTGTTGTTATACGCGGCT+AGG 0.569819 tig0022126:-7241 Msa1397040:CDS
TTTCGCGTAAGTTTCTGAGG+TGG 0.571830 tig0022126:+7469 None:intergenic
AAACAAGTCTGGTCGTTGCA+GGG 0.572120 tig0022126:+6488 None:intergenic
GAGTTCATGGCTCTATGGGA+TGG 0.573516 tig0022126:-3176 Msa1397040:CDS
GTCGCAGGCAGATTTGGAGA+AGG 0.576617 tig0022126:-2392 Msa1397040:CDS
TATCCAATTTCAAAGGCTTG+AGG 0.578118 tig0022126:+2943 None:intergenic
AACTTCTTGGACCACAAAAG+GGG 0.581082 tig0022126:-6455 Msa1397040:CDS
TAGGGCGGCGCTAAGTTACT+GGG 0.582080 tig0022126:-7222 Msa1397040:CDS
TTCGTTCGTTCAAAGGACAT+GGG 0.587190 tig0022126:-7293 Msa1397040:exon
TCATCGATGAATATAATGGA+TGG 0.591454 tig0022126:+3263 None:intergenic
GGAACCTAGACCTTTGTCGC+AGG 0.591455 tig0022126:-2407 Msa1397040:CDS
TTCGCAGACCACAAATTCGG+TGG 0.598079 tig0022126:-7371 Msa1397040:five_prime_UTR
ACCTCAGAAACTTACGCGAA+AGG 0.600996 tig0022126:-7467 Msa1397040:five_prime_UTR
AACAAGTCTGGTCGTTGCAG+GGG 0.601495 tig0022126:+6489 None:intergenic
TGTATGGACCTCCTGGCACT+GGG 0.603811 tig0022126:-6425 Msa1397040:CDS
AGAAGGCCCTTTCTACTTCG+CGG 0.604409 tig0022126:-2375 Msa1397040:CDS
TTGTGGTCTGCGAAAATCGA+GGG 0.604495 tig0022126:+7380 None:intergenic
GATATCCAGACCGGAAAGAG+AGG 0.613846 tig0022126:-2924 Msa1397040:CDS
AATAACCAAGGAAGTAATTG+CGG 0.616781 tig0022126:+2155 None:intergenic
TAATATTCAATCAATACTTG+CGG 0.621882 tig0022126:+7427 None:intergenic
AACTTGATGAAGCAATACTT+CGG 0.627940 tig0022126:-2972 Msa1397040:CDS
GTTGTTATACGCGGCTAGGG+CGG 0.629884 tig0022126:-7237 Msa1397040:CDS
TTGCTTCATCAAGTTCTGAA+GGG 0.630399 tig0022126:+2980 None:intergenic
GGAATTATCTAAGATTATGG+GGG 0.631503 tig0022126:-2257 Msa1397040:CDS
TTCTCTAATAGGAAAATATG+CGG 0.632360 tig0022126:+2780 None:intergenic
GCGTCGTTCATCAGATCATG+AGG 0.633325 tig0022126:-3219 Msa1397040:CDS
GTTCGTTCAAAGGACATGGG+AGG 0.635319 tig0022126:-7290 Msa1397040:exon
ACTTCTTGGACCACAAAAGG+GGG 0.638715 tig0022126:-6454 Msa1397040:CDS
TTTGTGGTCTGCGAAAATCG+AGG 0.650455 tig0022126:+7379 None:intergenic
GCTCGCAAAAGCTATTGCCA+AGG 0.654543 tig0022126:-6394 Msa1397040:CDS
ACAAGACCTGTTGTTATACG+CGG 0.658412 tig0022126:-7246 Msa1397040:CDS
ATATCCAGACCGGAAAGAGA+GGG 0.660218 tig0022126:-2923 Msa1397040:CDS
TTTGGGAACTAGAATAACCA+AGG 0.669935 tig0022126:+2143 None:intergenic
TTGTTGTGTAGAGAGTGCTC+GGG 0.671596 tig0022126:-3028 Msa1397040:intron
GTAGAATTTGACTCTATTGG+GGG 0.672250 tig0022126:-6555 Msa1397040:CDS
ACTGCATAATGAGAAGAAAG+GGG 0.674597 tig0022126:-2755 Msa1397040:CDS
CCTGATGAGCAAATGGTTTG+GGG 0.676141 tig0022126:-6334 Msa1397040:CDS
AGTCAAATTCTACATCGATG+TGG 0.703743 tig0022126:+6565 None:intergenic
GTACAATATCAAAAGTAGGG+CGG 0.723420 tig0022126:+1973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAAAAGTATTAAAAAAT+GGG + tig0022126:2326-2345 None:intergenic 10.0%
!!! ATGAAAAAAGTATTAAAAAA+TGG + tig0022126:2327-2346 None:intergenic 10.0%
!! AATTAAATCACTTAAATAAA+AGG + tig0022126:2759-2778 None:intergenic 10.0%
!!! ATGATCAAAATATTTTTTTT+TGG + tig0022126:3219-3238 None:intergenic 10.0%
!! GTAATGTAAAAAAAAAAAAA+AGG + tig0022126:4273-4292 None:intergenic 10.0%
!! AATAAAAGGAAAAGTAATAT+TGG + tig0022126:2745-2764 None:intergenic 15.0%
!!! ATCAAAATATTTTTTTTTGG+TGG + tig0022126:3216-3235 None:intergenic 15.0%
!!! TAAATTTTTGCTAATACATA+TGG - tig0022126:3243-3262 Msa1397040:CDS 15.0%
!!! ACACTTATATTTTTCATAAA+AGG - tig0022126:3297-3316 Msa1397040:CDS 15.0%
!! TTATATATGATAGAACATTA+TGG - tig0022126:3952-3971 Msa1397040:intron 15.0%
!! TATTAAAGAAAAAGATCAAA+CGG + tig0022126:4473-4492 None:intergenic 15.0%
!!! TTTTATTAGCCAATAAAAAT+AGG + tig0022126:5245-5264 None:intergenic 15.0%
!!! ATTTTTATTGGCTAATAAAA+TGG - tig0022126:5245-5264 Msa1397040:intron 15.0%
!! ATTTGAAAATTGAAATAGAA+GGG - tig0022126:5544-5563 Msa1397040:intron 15.0%
!!! TTATTTATTTTTCACATTTC+AGG - tig0022126:6969-6988 Msa1397040:intron 15.0%
!! TAATATTCAATCAATACTTG+CGG + tig0022126:1973-1992 None:intergenic 20.0%
!! TAATAAATTATGCTACTCTT+AGG + tig0022126:2402-2421 None:intergenic 20.0%
!! TAAGAGTAGCATAATTTATT+AGG - tig0022126:2401-2420 Msa1397040:CDS 20.0%
!! AAGAGTAGCATAATTTATTA+GGG - tig0022126:2402-2421 Msa1397040:CDS 20.0%
!!! CTTTTTCTAGCTTATATATA+GGG - tig0022126:2620-2639 Msa1397040:intron 20.0%
!!! AAAATATTTTTTTTTGGTGG+TGG + tig0022126:3213-3232 None:intergenic 20.0%
!!! AGTTTCTCTTAAGTTTTTAT+TGG + tig0022126:3891-3910 None:intergenic 20.0%
!! AAACTTATTAAGATTGATCT+AGG - tig0022126:3906-3925 Msa1397040:intron 20.0%
!! AACTTATTAAGATTGATCTA+GGG - tig0022126:3907-3926 Msa1397040:intron 20.0%
!!! GTTTATTGATTACCTTAAAA+GGG - tig0022126:4099-4118 Msa1397040:intron 20.0%
!! TTTCTTTAATATTGTAACTG+TGG - tig0022126:4482-4501 Msa1397040:intron 20.0%
!!! AGCTATTTTTTTTATATCTG+TGG + tig0022126:4921-4940 None:intergenic 20.0%
!! AAACTATTGGAAATACAATT+AGG + tig0022126:5128-5147 None:intergenic 20.0%
!!! TTAGTTCAGTTTTAAAAAAG+TGG - tig0022126:5296-5315 Msa1397040:intron 20.0%
!! CAGTTCAAAACTATATAAAA+TGG - tig0022126:5321-5340 Msa1397040:intron 20.0%
!! CATTTGAAAATTGAAATAGA+AGG - tig0022126:5543-5562 Msa1397040:intron 20.0%
!!! TTTCTGAAAGAAGTTATTAT+TGG - tig0022126:5649-5668 Msa1397040:intron 20.0%
!! CTTATTATAGCAGTTAATAA+GGG - tig0022126:5911-5930 Msa1397040:intron 20.0%
!! TTGATAAATGAAACATAGTT+AGG + tig0022126:5949-5968 None:intergenic 20.0%
!! ACTTATATTGTATAATCAGT+CGG + tig0022126:5975-5994 None:intergenic 20.0%
!! TATATTGAAGGTTATCTTAA+AGG - tig0022126:6501-6520 Msa1397040:CDS 20.0%
!! ATATTGAAGGTTATCTTAAA+GGG - tig0022126:6502-6521 Msa1397040:CDS 20.0%
!! AATCAGACAAATATAACTTT+GGG + tig0022126:6834-6853 None:intergenic 20.0%
!! TAATCAGACAAATATAACTT+TGG + tig0022126:6835-6854 None:intergenic 20.0%
!! GTGTATAATAATACAAGTTT+GGG + tig0022126:7274-7293 None:intergenic 20.0%
!! AGTGTATAATAATACAAGTT+TGG + tig0022126:7275-7294 None:intergenic 20.0%
!! TAAATAAAGTCTAGTATACA+TGG + tig0022126:7369-7388 None:intergenic 20.0%
!!! CTTTATTTATGATTGTTGTT+CGG - tig0022126:7380-7399 Msa1397040:five_prime_UTR 20.0%
!! TCGAAATTTGAAGTTAAAGT+TGG + tig0022126:2073-2092 None:intergenic 25.0%
!! TTGAACCAATTTTCAATTGT+TGG - tig0022126:2355-2374 Msa1397040:CDS 25.0%
! TATCACCAACAATTGAAAAT+TGG + tig0022126:2363-2382 None:intergenic 25.0%
! CCTATATATAAGCTAGAAAA+AGG + tig0022126:2622-2641 None:intergenic 25.0%
!!! CCTTTTTCTAGCTTATATAT+AGG - tig0022126:2619-2638 Msa1397040:intron 25.0%
!! ATAGCCTTTGAAAACTAATA+CGG + tig0022126:2653-2672 None:intergenic 25.0%
! AAGCATAAAACTATCATATG+CGG - tig0022126:2676-2695 Msa1397040:intron 25.0%
! ATGTAGAATTTGACTCTATT+GGG - tig0022126:2840-2859 Msa1397040:CDS 25.0%
!! TATTTTCTTAGCTCAGTAAT+TGG - tig0022126:3273-3292 Msa1397040:CDS 25.0%
!!! AGAAAGCATCAACAATTTAA+TGG + tig0022126:3342-3361 None:intergenic 25.0%
!! AAGGCACAATATATTTTGTA+TGG - tig0022126:3630-3649 Msa1397040:intron 25.0%
!! AGGCACAATATATTTTGTAT+GGG - tig0022126:3631-3650 Msa1397040:intron 25.0%
! TAATCAATAAACCAATCTCA+AGG + tig0022126:4091-4110 None:intergenic 25.0%
!! GGTTTATTGATTACCTTAAA+AGG - tig0022126:4098-4117 Msa1397040:intron 25.0%
! TTTCAATGAAGAACAACAAA+TGG + tig0022126:4582-4601 None:intergenic 25.0%
! AGAATCTCACAAGAAATATT+GGG + tig0022126:4605-4624 None:intergenic 25.0%
! GTATTCTTAACAAATGATGT+AGG - tig0022126:4942-4961 Msa1397040:intron 25.0%
! TGTCTTGTGAAATAATATGT+AGG - tig0022126:5056-5075 Msa1397040:intron 25.0%
! TTGGAAATACAATTAGGAAT+TGG + tig0022126:5122-5141 None:intergenic 25.0%
! AATAAAATGGACGTCATATT+AGG - tig0022126:5258-5277 Msa1397040:intron 25.0%
! ATAAAATGGACGTCATATTA+GGG - tig0022126:5259-5278 Msa1397040:intron 25.0%
! AAAGAAGTTATTATTGGAAC+TGG - tig0022126:5655-5674 Msa1397040:intron 25.0%
!!! TCTTCCTTATTGTTTTTTTC+TGG - tig0022126:5734-5753 Msa1397040:intron 25.0%
! TCAACCAGAAAAAAACAATA+AGG + tig0022126:5741-5760 None:intergenic 25.0%
! GCTTATTATAGCAGTTAATA+AGG - tig0022126:5910-5929 Msa1397040:intron 25.0%
! CTTATATTGTATAATCAGTC+GGG + tig0022126:5974-5993 None:intergenic 25.0%
! TACTTCATCGATGAATATAA+TGG + tig0022126:6141-6160 None:intergenic 25.0%
! ACTACTTAAAAACTTACGAT+CGG + tig0022126:6255-6274 None:intergenic 25.0%
! ATAGATTTCAGTTATATAGC+TGG - tig0022126:6544-6563 Msa1397040:CDS 25.0%
! TTCTCTAATAGGAAAATATG+CGG + tig0022126:6620-6639 None:intergenic 25.0%
! TTATGCAGTATTTCTCTAAT+AGG + tig0022126:6631-6650 None:intergenic 25.0%
! ACTGAAAAATATACTAACAC+AGG + tig0022126:6674-6693 None:intergenic 25.0%
!!! TTGTTTTTTCATATCATGAG+CGG - tig0022126:6924-6943 Msa1397040:intron 25.0%
!! AGGGAATTATCTAAGATTAT+GGG - tig0022126:7138-7157 Msa1397040:CDS 25.0%
! ATGGTACAATATCAAAAGTA+GGG + tig0022126:7430-7449 None:intergenic 25.0%
!! TAGGAATTGGTTTGAATAAG+AGG + tig0022126:2296-2315 None:intergenic 30.0%
TATTCAAACCAATTCCTATG+AGG - tig0022126:2298-2317 Msa1397040:CDS 30.0%
TTAAAAAATGGGTACCTCAT+AGG + tig0022126:2315-2334 None:intergenic 30.0%
TTGAAAACTAATACGGAACA+TGG + tig0022126:2646-2665 None:intergenic 30.0%
!!! TGTTCCGTATTAGTTTTCAA+AGG - tig0022126:2646-2665 Msa1397040:intron 30.0%
!!! GCATATGATAGTTTTATGCT+TGG + tig0022126:2677-2696 None:intergenic 30.0%
AGCATAAAACTATCATATGC+GGG - tig0022126:2677-2696 Msa1397040:intron 30.0%
GATGTAGAATTTGACTCTAT+TGG - tig0022126:2839-2858 Msa1397040:CDS 30.0%
TGTAGAATTTGACTCTATTG+GGG - tig0022126:2841-2860 Msa1397040:CDS 30.0%
GACAATGCATAATATATGCA+AGG - tig0022126:3168-3187 Msa1397040:CDS 30.0%
TACAGTGTGATTACAATAGT+TGG + tig0022126:3391-3410 None:intergenic 30.0%
! ATAGTTTCTTTTGCTGAGAA+GGG - tig0022126:3551-3570 Msa1397040:intron 30.0%
!! TGCTTGATTTATTTTCGTGT+TGG + tig0022126:3680-3699 None:intergenic 30.0%
ATAAGAATACTGTGCTTAAG+TGG - tig0022126:3708-3727 Msa1397040:intron 30.0%
AGAGGTTTACAAGCATAAAT+AGG + tig0022126:4202-4221 None:intergenic 30.0%
GGTTCGTTAGTTAATTAAAG+AGG + tig0022126:4220-4239 None:intergenic 30.0%
GATGTCATTCTCTTAATGTT+AGG + tig0022126:4241-4260 None:intergenic 30.0%
ATTATGATGTACGTTACTGT+AGG - tig0022126:4361-4380 Msa1397040:intron 30.0%
TTCTTCATATTCCATTTGCT+TGG - tig0022126:4400-4419 Msa1397040:intron 30.0%
TCTTCATATTCCATTTGCTT+GGG - tig0022126:4401-4420 Msa1397040:intron 30.0%
TTCTACTATAACCTTTGCTT+AGG + tig0022126:4446-4465 None:intergenic 30.0%
TATTGTAACTGTGGTCAATT+TGG - tig0022126:4491-4510 Msa1397040:intron 30.0%
ATTGTAACTGTGGTCAATTT+GGG - tig0022126:4492-4511 Msa1397040:intron 30.0%
! GATGTGGGTTTTTATATGTT+GGG + tig0022126:4553-4572 None:intergenic 30.0%
CAGAATCTCACAAGAAATAT+TGG + tig0022126:4606-4625 None:intergenic 30.0%
TTATTTCACAAGACAAAGCA+AGG + tig0022126:5051-5070 None:intergenic 30.0%
TGCACAGAAAACAAAACTAT+TGG + tig0022126:5141-5160 None:intergenic 30.0%
!!! TCTAGGGTTCCTATTTTTAT+TGG - tig0022126:5233-5252 Msa1397040:intron 30.0%
ATGGATAACAACCTTACATT+GGG - tig0022126:5494-5513 Msa1397040:intron 30.0%
TTCTTCCATCCATCTATTTA+AGG - tig0022126:5575-5594 Msa1397040:intron 30.0%
! ACGCTAGAAATTTTGTCAAA+TGG + tig0022126:5601-5620 None:intergenic 30.0%
TCTTTCAGAAATAGTGCATT+CGG + tig0022126:5640-5659 None:intergenic 30.0%
!!! TGGAACTGGTTTTTGAAATA+AGG - tig0022126:5669-5688 Msa1397040:intron 30.0%
TCCAGTTTAGAAAGAGTAAA+AGG - tig0022126:5711-5730 Msa1397040:intron 30.0%
! ACCTTTTACTCTTTCTAAAC+TGG + tig0022126:5715-5734 None:intergenic 30.0%
AGTGTATATATGCTTAGTGA+TGG - tig0022126:5792-5811 Msa1397040:intron 30.0%
TGTTGTTATAGAACCAATAC+AGG + tig0022126:5823-5842 None:intergenic 30.0%
!! ATGTGTGGTTATTTCTTTGA+AGG - tig0022126:5855-5874 Msa1397040:intron 30.0%
TAACTGCTATAATAAGCACT+TGG + tig0022126:5907-5926 None:intergenic 30.0%
TTTATGAGCCAAGCTAAATA+CGG + tig0022126:6108-6127 None:intergenic 30.0%
! TCATCGATGAATATAATGGA+TGG + tig0022126:6137-6156 None:intergenic 30.0%
!!! GATGAAGTAGACAGTTTTTT+GGG - tig0022126:6152-6171 Msa1397040:intron 30.0%
AAACATGAAAACTGAGTTCA+TGG - tig0022126:6208-6227 Msa1397040:intron 30.0%
AACTTGATGAAGCAATACTT+CGG - tig0022126:6425-6444 Msa1397040:CDS 30.0%
! TTATATAGCTGGTTTATGCA+AGG - tig0022126:6555-6574 Msa1397040:CDS 30.0%
! TATATAGCTGGTTTATGCAA+GGG - tig0022126:6556-6575 Msa1397040:CDS 30.0%
TCTATTTGATCTTTGCAAGA+AGG - tig0022126:6594-6613 Msa1397040:CDS 30.0%
ATACTGCATAATGAGAAGAA+AGG - tig0022126:6640-6659 Msa1397040:intron 30.0%
TACTGCATAATGAGAAGAAA+GGG - tig0022126:6641-6660 Msa1397040:intron 30.0%
CTGGGAAAATTCAAAAAACA+TGG + tig0022126:6717-6736 None:intergenic 30.0%
! AACAGCATATTTTCACTTCT+GGG + tig0022126:6735-6754 None:intergenic 30.0%
! AAACAGCATATTTTCACTTC+TGG + tig0022126:6736-6755 None:intergenic 30.0%
! CAGGGAATTATCTAAGATTA+TGG - tig0022126:7137-7156 Msa1397040:CDS 30.0%
! GGGAATTATCTAAGATTATG+GGG - tig0022126:7139-7158 Msa1397040:CDS 30.0%
! GGAATTATCTAAGATTATGG+GGG - tig0022126:7140-7159 Msa1397040:CDS 30.0%
AATAACCAAGGAAGTAATTG+CGG + tig0022126:7245-7264 None:intergenic 30.0%
CATGGTACAATATCAAAAGT+AGG + tig0022126:7431-7450 None:intergenic 30.0%
AATTTGACTGCATCATATCA+TGG + tig0022126:7449-7468 None:intergenic 30.0%
! ATTTTCGCAGACCACAAATT+CGG - tig0022126:2023-2042 Msa1397040:three_prime_UTR 35.0%
AAAGAGATTGCTAAACGTCT+TGG - tig0022126:2266-2285 Msa1397040:CDS 35.0%
AAATTATGCTACTCTTAGGC+AGG + tig0022126:2398-2417 None:intergenic 35.0%
! TTTATTAGGGATGAGAGCAT+AGG - tig0022126:2415-2434 Msa1397040:intron 35.0%
GAAAACTGCAGCACTAATTT+CGG - tig0022126:2469-2488 Msa1397040:intron 35.0%
AAAACTGCAGCACTAATTTC+GGG - tig0022126:2470-2489 Msa1397040:intron 35.0%
!!! TGGTTTTATGCAAAAACTCC+AGG + tig0022126:2704-2723 None:intergenic 35.0%
GGAGATAAGTTAGCATAGAA+TGG + tig0022126:2724-2743 None:intergenic 35.0%
GTCAGGATTTATAACATCAC+AGG + tig0022126:2813-2832 None:intergenic 35.0%
AGTCAAATTCTACATCGATG+TGG + tig0022126:2835-2854 None:intergenic 35.0%
GTAGAATTTGACTCTATTGG+GGG - tig0022126:2842-2861 Msa1397040:CDS 35.0%
AAACTTCTTGGACCACAAAA+GGG - tig0022126:2941-2960 Msa1397040:CDS 35.0%
! GAGCAGTTTTCATTAATGTG+AGG - tig0022126:3032-3051 Msa1397040:intron 35.0%
TATCAAACCTGATGAGCAAA+TGG - tig0022126:3056-3075 Msa1397040:intron 35.0%
! AACACACTTACCAAGCTTTT+GGG + tig0022126:3092-3111 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - tig0022126:3173-3192 Msa1397040:CDS 35.0%
GCATAATATATGCAAGGTCT+GGG - tig0022126:3174-3193 Msa1397040:CDS 35.0%
CATAATATATGCAAGGTCTG+GGG - tig0022126:3175-3194 Msa1397040:CDS 35.0%
TATGCGAGTGTATAAAAGCT+TGG - tig0022126:3361-3380 Msa1397040:intron 35.0%
AAAGAAACTATGTTGGTCGT+TGG + tig0022126:3542-3561 None:intergenic 35.0%
CTCAGCAAAAGAAACTATGT+TGG + tig0022126:3549-3568 None:intergenic 35.0%
! CATAGTTTCTTTTGCTGAGA+AGG - tig0022126:3550-3569 Msa1397040:intron 35.0%
TATATTGTGCCTTTACCACT+GGG + tig0022126:3623-3642 None:intergenic 35.0%
ATATATTGTGCCTTTACCAC+TGG + tig0022126:3624-3643 None:intergenic 35.0%
!!! AGTTTCCACCCTCTTTTTTA+CGG + tig0022126:3766-3785 None:intergenic 35.0%
TAAAAAAGAGGGTGGAAACT+AGG - tig0022126:3766-3785 Msa1397040:intron 35.0%
AGTAAGAAGAGTAGATCAGA+TGG - tig0022126:3833-3852 Msa1397040:intron 35.0%
! AAGCTAATTTGCCTTGAGAT+TGG - tig0022126:4077-4096 Msa1397040:intron 35.0%
!! GCAATGAGTTTGTTGCAAAA+CGG + tig0022126:4144-4163 None:intergenic 35.0%
ACAAGCATAAATAGGACACA+GGG + tig0022126:4194-4213 None:intergenic 35.0%
TACAAGCATAAATAGGACAC+AGG + tig0022126:4195-4214 None:intergenic 35.0%
TGTACGTTACTGTAGGAATA+TGG - tig0022126:4368-4387 Msa1397040:intron 35.0%
! GGATGTGGGTTTTTATATGT+TGG + tig0022126:4554-4573 None:intergenic 35.0%
ACATATAAAAACCCACATCC+AGG - tig0022126:4554-4573 Msa1397040:intron 35.0%
TGATCGTGAAAAAGGTTAAC+AGG + tig0022126:4735-4754 None:intergenic 35.0%
CGTGAATCAAGATTGTAAGA+AGG - tig0022126:4759-4778 Msa1397040:intron 35.0%
!!! TGTGATGGCAGAGATTTTTT+GGG + tig0022126:4829-4848 None:intergenic 35.0%
!!! ATGTGATGGCAGAGATTTTT+TGG + tig0022126:4830-4849 None:intergenic 35.0%
ATAGATGAAGTAGCATGTGA+TGG + tig0022126:4844-4863 None:intergenic 35.0%
GAATGTCACATGTAACATTG+TGG + tig0022126:4888-4907 None:intergenic 35.0%
CAATGTTACATGTGACATTC+AGG - tig0022126:4888-4907 Msa1397040:intron 35.0%
ACAATAGCCAATCACAAACA+GGG + tig0022126:5204-5223 None:intergenic 35.0%
ATCACCATTAGATGAACAGA+TGG + tig0022126:5461-5480 None:intergenic 35.0%
GATGGATAACAACCTTACAT+TGG - tig0022126:5493-5512 Msa1397040:intron 35.0%
! AAGCTCATTTTCCCAATGTA+AGG + tig0022126:5508-5527 None:intergenic 35.0%
AAATAGATGGATGGAAGAAG+CGG + tig0022126:5574-5593 None:intergenic 35.0%
! AATGGCCTTAAATAGATGGA+TGG + tig0022126:5583-5602 None:intergenic 35.0%
! GTCAAATGGCCTTAAATAGA+TGG + tig0022126:5587-5606 None:intergenic 35.0%
CATATATACACTCCTCAAGA+AGG + tig0022126:5784-5803 None:intergenic 35.0%
TTATAGAACCAATACAGGAG+TGG + tig0022126:5818-5837 None:intergenic 35.0%
ACAGTAGATTAGCAAATGTG+TGG - tig0022126:5840-5859 Msa1397040:intron 35.0%
AATATTTGTCTGTTCTGCAG+TGG - tig0022126:6079-6098 Msa1397040:intron 35.0%
!!! CGATGAAGTAGACAGTTTTT+TGG - tig0022126:6151-6170 Msa1397040:intron 35.0%
ACTTAAAAACTTACGATCGG+TGG + tig0022126:6252-6271 None:intergenic 35.0%
!! TTGCTTCATCAAGTTCTGAA+GGG + tig0022126:6420-6439 None:intergenic 35.0%
! ATTGCTTCATCAAGTTCTGA+AGG + tig0022126:6421-6440 None:intergenic 35.0%
TATCCAATTTCAAAGGCTTG+AGG + tig0022126:6457-6476 None:intergenic 35.0%
GTCTGGATATCCAATTTCAA+AGG + tig0022126:6464-6483 None:intergenic 35.0%
TTGAAATTGGATATCCAGAC+CGG - tig0022126:6464-6483 Msa1397040:CDS 35.0%
ACTGCATAATGAGAAGAAAG+GGG - tig0022126:6642-6661 Msa1397040:intron 35.0%
! AAGATCAATTTGTGATGACG+TGG - tig0022126:6889-6908 Msa1397040:intron 35.0%
!!! TTTTTTCATATCATGAGCGG+TGG - tig0022126:6927-6946 Msa1397040:intron 35.0%
TTTAATCCTGAGCATCTACT+TGG + tig0022126:7176-7195 None:intergenic 35.0%
TTTGGGAACTAGAATAACCA+AGG + tig0022126:7257-7276 None:intergenic 35.0%
TGCATGAAATTCTGAGCTAA+AGG + tig0022126:7320-7339 None:intergenic 35.0%
GTACAATATCAAAAGTAGGG+CGG + tig0022126:7427-7446 None:intergenic 35.0%
TCTTTCGTTCGTTCGTTCAA+AGG - tig0022126:2097-2116 Msa1397040:three_prime_UTR 40.0%
TTCGTTCGTTCAAAGGACAT+GGG - tig0022126:2104-2123 Msa1397040:three_prime_UTR 40.0%
ACAAGACCTGTTGTTATACG+CGG - tig0022126:2151-2170 Msa1397040:three_prime_UTR 40.0%
!! AAGTTACTGGGTATTGGTCA+CGG - tig0022126:2187-2206 Msa1397040:three_prime_UTR 40.0%
TTCTTCGATGATTCACGGTT+CGG + tig0022126:2230-2249 None:intergenic 40.0%
AATGGGTACCTCATAGGAAT+TGG + tig0022126:2309-2328 None:intergenic 40.0%
!! ATGAGAGCATAGGTTGGTTT+CGG - tig0022126:2425-2444 Msa1397040:intron 40.0%
TCGGGCTGAAAATTGTCAAA+CGG - tig0022126:2444-2463 Msa1397040:intron 40.0%
TAGTTGCATAGAGCAACACA+AGG - tig0022126:2513-2532 Msa1397040:intron 40.0%
TTGCGCTCTTTACTGTATAC+AGG - tig0022126:2778-2797 Msa1397040:CDS 40.0%
AATTCTACATCGATGTGGTC+AGG + tig0022126:2830-2849 None:intergenic 40.0%
! TTTTCGCATGGCAAACTTCT+TGG - tig0022126:2929-2948 Msa1397040:CDS 40.0%
CAAACTTCTTGGACCACAAA+AGG - tig0022126:2940-2959 Msa1397040:CDS 40.0%
AACTTCTTGGACCACAAAAG+GGG - tig0022126:2942-2961 Msa1397040:CDS 40.0%
AACCTGATGAGCAAATGGTT+TGG - tig0022126:3061-3080 Msa1397040:intron 40.0%
ACCTGATGAGCAAATGGTTT+GGG - tig0022126:3062-3081 Msa1397040:intron 40.0%
! CAACACACTTACCAAGCTTT+TGG + tig0022126:3093-3112 None:intergenic 40.0%
!!! TTTTTTTTTGGTGGTGGCCA+GGG + tig0022126:3207-3226 None:intergenic 40.0%
!!! ATTTTTTTTTGGTGGTGGCC+AGG + tig0022126:3208-3227 None:intergenic 40.0%
TGGTATCACTTGCAGTTGTA+AGG - tig0022126:3475-3494 Msa1397040:intron 40.0%
TCAAATACCATTTAGCCCAG+TGG - tig0022126:3605-3624 Msa1397040:intron 40.0%
! TTTTGTATGGGACAGAGTGT+TGG - tig0022126:3643-3662 Msa1397040:intron 40.0%
! TTTGTATGGGACAGAGTGTT+GGG - tig0022126:3644-3663 Msa1397040:intron 40.0%
GCTTAAGTGGTACTCATAGT+AGG - tig0022126:3721-3740 Msa1397040:intron 40.0%
GTACTCATAGTAGGAGAGTT+GGG - tig0022126:3730-3749 Msa1397040:intron 40.0%
TACTCATAGTAGGAGAGTTG+GGG - tig0022126:3731-3750 Msa1397040:intron 40.0%
TAGCACTCACCGTAAAAAAG+AGG - tig0022126:3754-3773 Msa1397040:intron 40.0%
AGCACTCACCGTAAAAAAGA+GGG - tig0022126:3755-3774 Msa1397040:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG - tig0022126:3836-3855 Msa1397040:intron 40.0%
AATCACATCCCTAGAGACAA+AGG - tig0022126:3861-3880 Msa1397040:intron 40.0%
! TTGGTCTTCCTTTGTCTCTA+GGG + tig0022126:3872-3891 None:intergenic 40.0%
!! ATTGGTCTTCCTTTGTCTCT+AGG + tig0022126:3873-3892 None:intergenic 40.0%
! AAGCCTTATCACAGTATGTG+GGG + tig0022126:4001-4020 None:intergenic 40.0%
! CAAGCCTTATCACAGTATGT+GGG + tig0022126:4002-4021 None:intergenic 40.0%
AAGCATAAATAGGACACAGG+GGG + tig0022126:4192-4211 None:intergenic 40.0%
CAAGCATAAATAGGACACAG+GGG + tig0022126:4193-4212 None:intergenic 40.0%
!!! TCCAGCTTTTAGAGCTATGA+GGG + tig0022126:4319-4338 None:intergenic 40.0%
!!! TTCCAGCTTTTAGAGCTATG+AGG + tig0022126:4320-4339 None:intergenic 40.0%
! AACTGTGGTCAATTTGGGTT+TGG - tig0022126:4497-4516 Msa1397040:intron 40.0%
! TATGTTGGGTCTGTTTCTCT+CGG + tig0022126:4539-4558 None:intergenic 40.0%
TCTCTCTCTCTCTCATCTTT+GGG + tig0022126:4702-4721 None:intergenic 40.0%
! CATGCTACTTCATCTATGCT+TGG - tig0022126:4847-4866 Msa1397040:intron 40.0%
!! AAAAGCATTTGTCACCTGGT+GGG - tig0022126:5005-5024 Msa1397040:intron 40.0%
!! GGTGTTATTAAAATCCCACC+AGG + tig0022126:5022-5041 None:intergenic 40.0%
!! GGTGGGATTTTAATAACACC+AGG - tig0022126:5022-5041 Msa1397040:intron 40.0%
AATAGCCAATCACAAACAGG+GGG + tig0022126:5202-5221 None:intergenic 40.0%
CAATAGCCAATCACAAACAG+GGG + tig0022126:5203-5222 None:intergenic 40.0%
CACAATAGCCAATCACAAAC+AGG + tig0022126:5205-5224 None:intergenic 40.0%
! CTGTTTGTGATTGGCTATTG+TGG - tig0022126:5203-5222 Msa1397040:intron 40.0%
AATGGACGTCATATTAGGGT+TGG - tig0022126:5263-5282 Msa1397040:intron 40.0%
!! CATATTAGGGTTGGTTCTAG+TGG - tig0022126:5272-5291 Msa1397040:intron 40.0%
AAGGCCATCTGTTCATCTAA+TGG - tig0022126:5454-5473 Msa1397040:intron 40.0%
!!! GGTGATCTGTTGTTTTCAGA+TGG - tig0022126:5475-5494 Msa1397040:intron 40.0%
TTTGAAGGCTTGAAGCTGTT+CGG - tig0022126:5870-5889 Msa1397040:intron 40.0%
GAAACATAGTTAGGTATGCC+AGG + tig0022126:5940-5959 None:intergenic 40.0%
!!! TTCTGTTGCTTTTTTCTGCG+TGG - tig0022126:6034-6053 Msa1397040:intron 40.0%
! TTCTGCGTGGTTCTTTGTTT+AGG - tig0022126:6047-6066 Msa1397040:intron 40.0%
! AAACTGAGTTCATGGCTCTA+TGG - tig0022126:6216-6235 Msa1397040:intron 40.0%
! AACTGAGTTCATGGCTCTAT+GGG - tig0022126:6217-6236 Msa1397040:intron 40.0%
!! CTTCCTCAAGCCTTTGAAAT+TGG - tig0022126:6451-6470 Msa1397040:CDS 40.0%
ATATATCAGCCCTCTCTTTC+CGG + tig0022126:6486-6505 None:intergenic 40.0%
AGAGAGGGCTGATATATTGA+AGG - tig0022126:6489-6508 Msa1397040:CDS 40.0%
ACATCAAGAACGTCGTTTCA+TGG - tig0022126:7081-7100 Msa1397040:intron 40.0%
AGTAATTGCGGTTGCAATCT+GGG + tig0022126:7233-7252 None:intergenic 40.0%
AAGTAATTGCGGTTGCAATC+TGG + tig0022126:7234-7253 None:intergenic 40.0%
!! TTCGCGTAAGTTTCTGAGGT+GGG + tig0022126:1930-1949 None:intergenic 45.0%
! TTTCGCGTAAGTTTCTGAGG+TGG + tig0022126:1931-1950 None:intergenic 45.0%
ACCTCAGAAACTTACGCGAA+AGG - tig0022126:1930-1949 Msa1397040:three_prime_UTR 45.0%
TCCTTTCGCGTAAGTTTCTG+AGG + tig0022126:1934-1953 None:intergenic 45.0%
TTGTGGTCTGCGAAAATCGA+GGG + tig0022126:2020-2039 None:intergenic 45.0%
TTTGTGGTCTGCGAAAATCG+AGG + tig0022126:2021-2040 None:intergenic 45.0%
GTATCCAACCACCGAATTTG+TGG + tig0022126:2037-2056 None:intergenic 45.0%
GTTCGTTCGTTCAAAGGACA+TGG - tig0022126:2103-2122 Msa1397040:three_prime_UTR 45.0%
!! GGGAGGTTTTTCAGATACGA+AGG - tig0022126:2124-2143 Msa1397040:three_prime_UTR 45.0%
!! AGTTACTGGGTATTGGTCAC+GGG - tig0022126:2188-2207 Msa1397040:three_prime_UTR 45.0%
TCTTCGATGATTCACGGTTC+GGG + tig0022126:2229-2248 None:intergenic 45.0%
GAACCGTGAATCATCGAAGA+AGG - tig0022126:2229-2248 Msa1397040:CDS 45.0%
GAGCCTTCTTCGATGATTCA+CGG + tig0022126:2235-2254 None:intergenic 45.0%
! TTAGGGATGAGAGCATAGGT+TGG - tig0022126:2419-2438 Msa1397040:intron 45.0%
!! TGAGAGCATAGGTTGGTTTC+GGG - tig0022126:2426-2445 Msa1397040:intron 45.0%
AAACTATCATATGCGGGACC+TGG - tig0022126:2683-2702 Msa1397040:intron 45.0%
AAACAAGTCTGGTCGTTGCA+GGG + tig0022126:2912-2931 None:intergenic 45.0%
AAAACAAGTCTGGTCGTTGC+AGG + tig0022126:2913-2932 None:intergenic 45.0%
TTGCCATGCGAAAACAAGTC+TGG + tig0022126:2923-2942 None:intergenic 45.0%
ACTTCTTGGACCACAAAAGG+GGG - tig0022126:2943-2962 Msa1397040:CDS 45.0%
! TACAACAGAACCCCCTTTTG+TGG + tig0022126:2956-2975 None:intergenic 45.0%
CAAAAGGGGGTTCTGTTGTA+TGG - tig0022126:2956-2975 Msa1397040:CDS 45.0%
AAAGCTATTGCCAAGGAGTC+TGG - tig0022126:3010-3029 Msa1397040:CDS 45.0%
CCTGATGAGCAAATGGTTTG+GGG - tig0022126:3063-3082 Msa1397040:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - tig0022126:3146-3165 Msa1397040:intron 45.0%
GTTTCACTCACTGTTACGAG+TGG - tig0022126:3455-3474 Msa1397040:intron 45.0%
ACCATTTAGCCCAGTGGTAA+AGG - tig0022126:3611-3630 Msa1397040:intron 45.0%
GGTACTCATAGTAGGAGAGT+TGG - tig0022126:3729-3748 Msa1397040:intron 45.0%
ACTCACCGTAAAAAAGAGGG+TGG - tig0022126:3758-3777 Msa1397040:intron 45.0%
CTTATCACAGTATGTGGGGT+CGG + tig0022126:3997-4016 None:intergenic 45.0%
! CCAAGCCTTATCACAGTATG+TGG + tig0022126:4003-4022 None:intergenic 45.0%
CCACATACTGTGATAAGGCT+TGG - tig0022126:4000-4019 Msa1397040:intron 45.0%
!!! GAGGAGTGTTTGCCCTTTTA+AGG + tig0022126:4114-4133 None:intergenic 45.0%
TAAAAGGGCAAACACTCCTC+AGG - tig0022126:4114-4133 Msa1397040:intron 45.0%
!!! TAGGTTGATTTTGAGGTGGG+CGG + tig0022126:4295-4314 None:intergenic 45.0%
!!! GGCTAGGTTGATTTTGAGGT+GGG + tig0022126:4298-4317 None:intergenic 45.0%
!!! TGAGGGCTAGGTTGATTTTG+AGG + tig0022126:4302-4321 None:intergenic 45.0%
!!! CTTTTAGAGCTATGAGGGCT+AGG + tig0022126:4314-4333 None:intergenic 45.0%
GCTGTGTATGTCCTAAGCAA+AGG - tig0022126:4432-4451 Msa1397040:intron 45.0%
! GGTTTGGCTCATTAGCCATT+AGG - tig0022126:4513-4532 Msa1397040:intron 45.0%
AACAAATGGAGCCTGGATGT+GGG + tig0022126:4568-4587 None:intergenic 45.0%
GAAGAACAACAAATGGAGCC+TGG + tig0022126:4575-4594 None:intergenic 45.0%
TGTGAGATTCTGTTGTAGCC+TGG - tig0022126:4614-4633 Msa1397040:intron 45.0%
GTGAGATTCTGTTGTAGCCT+GGG - tig0022126:4615-4634 Msa1397040:intron 45.0%
TGAGATTCTGTTGTAGCCTG+GGG - tig0022126:4616-4635 Msa1397040:intron 45.0%
CTCTCTCTCTCTCTCATCTT+TGG + tig0022126:4703-4722 None:intergenic 45.0%
CACGATCGTGATCGTGAAAA+AGG + tig0022126:4743-4762 None:intergenic 45.0%
!!! TTTTTGGGTCACGGGTATTG+CGG + tig0022126:4814-4833 None:intergenic 45.0%
!!! GCAGAGATTTTTTGGGTCAC+GGG + tig0022126:4822-4841 None:intergenic 45.0%
!!! GGCAGAGATTTTTTGGGTCA+CGG + tig0022126:4823-4842 None:intergenic 45.0%
ATCTATGCTTGGCCACACTA+GGG - tig0022126:4858-4877 Msa1397040:intron 45.0%
CATTGTGGTTAACCCTAGTG+TGG + tig0022126:4873-4892 None:intergenic 45.0%
!! GCAGAAAAGCATTTGTCACC+TGG - tig0022126:5001-5020 Msa1397040:intron 45.0%
!! GAAAAGCATTTGTCACCTGG+TGG - tig0022126:5004-5023 Msa1397040:intron 45.0%
ATAGCCAATCACAAACAGGG+GGG + tig0022126:5201-5220 None:intergenic 45.0%
! TGTGATTGGCTATTGTGGTC+AGG - tig0022126:5208-5227 Msa1397040:intron 45.0%
! GTGATTGGCTATTGTGGTCA+GGG - tig0022126:5209-5228 Msa1397040:intron 45.0%
CTATTGTGGTCAGGGATCTA+GGG - tig0022126:5217-5236 Msa1397040:intron 45.0%
AGAACACCAGCACTCGATAA+GGG + tig0022126:5372-5391 None:intergenic 45.0%
AAGAACACCAGCACTCGATA+AGG + tig0022126:5373-5392 None:intergenic 45.0%
CAAACTCTCAGTCTGCTTGA+TGG - tig0022126:5429-5448 Msa1397040:intron 45.0%
! CTCAGTCTGCTTGATGGATA+AGG - tig0022126:5435-5454 Msa1397040:intron 45.0%
TCGTTGCAAGATCCTTCTTG+AGG - tig0022126:5769-5788 Msa1397040:intron 45.0%
AGCAGTTAATAAGGGCAACC+TGG - tig0022126:5919-5938 Msa1397040:intron 45.0%
!! GTTGTTGTGTAGAGAGTGCT+CGG - tig0022126:6368-6387 Msa1397040:CDS 45.0%
!! TTGTTGTGTAGAGAGTGCTC+GGG - tig0022126:6369-6388 Msa1397040:CDS 45.0%
ATATCCAGACCGGAAAGAGA+GGG - tig0022126:6474-6493 Msa1397040:CDS 45.0%
GGTTATCTTAAAGGGCGAGA+AGG - tig0022126:6510-6529 Msa1397040:CDS 45.0%
GGTTTATGCAAGGGTTACAC+TGG - tig0022126:6565-6584 Msa1397040:CDS 45.0%
TGTCTTCCGCGAAGTAGAAA+GGG + tig0022126:7031-7050 None:intergenic 45.0%
ATGTCTTCCGCGAAGTAGAA+AGG + tig0022126:7032-7051 None:intergenic 45.0%
TTCTACTTCGCGGAAGACAT+CGG - tig0022126:7032-7051 Msa1397040:intron 45.0%
!! TCAGGTTGAAGCTGCAATCA+GGG - tig0022126:7119-7138 Msa1397040:CDS 45.0%
TCACATCCAAGTAGATGCTC+AGG - tig0022126:7167-7186 Msa1397040:CDS 45.0%
TGCAACCGCAATTACTTCCT+TGG - tig0022126:7237-7256 Msa1397040:CDS 45.0%
TTCTGAGCTAAAGGCAACAC+TGG + tig0022126:7311-7330 None:intergenic 45.0%
TTCGCAGACCACAAATTCGG+TGG - tig0022126:2026-2045 Msa1397040:three_prime_UTR 50.0%
! CAGACCACAAATTCGGTGGT+TGG - tig0022126:2030-2049 Msa1397040:three_prime_UTR 50.0%
GTTCGTTCAAAGGACATGGG+AGG - tig0022126:2107-2126 Msa1397040:three_prime_UTR 50.0%
ACCTGTTGTTATACGCGGCT+AGG - tig0022126:2156-2175 Msa1397040:three_prime_UTR 50.0%
CCTGTTGTTATACGCGGCTA+GGG - tig0022126:2157-2176 Msa1397040:three_prime_UTR 50.0%
GGCGCTAAGTTACTGGGTAT+TGG - tig0022126:2181-2200 Msa1397040:three_prime_UTR 50.0%
! CACGGTTCGGGTCAAGATAA+CGG + tig0022126:2217-2236 None:intergenic 50.0%
AACAAGTCTGGTCGTTGCAG+GGG + tig0022126:2911-2930 None:intergenic 50.0%
!! CGACCAGACTTGTTTTCGCA+TGG - tig0022126:2917-2936 Msa1397040:CDS 50.0%
GTTCTGTTGTATGGACCTCC+TGG - tig0022126:2965-2984 Msa1397040:CDS 50.0%
! GGCAATAGCTTTTGCGAGCA+TGG + tig0022126:3002-3021 None:intergenic 50.0%
GCTCGCAAAAGCTATTGCCA+AGG - tig0022126:3003-3022 Msa1397040:CDS 50.0%
GAAAACTGCTCCAGACTCCT+TGG + tig0022126:3023-3042 None:intergenic 50.0%
CCCCAAACCATTTGCTCATC+AGG + tig0022126:3066-3085 None:intergenic 50.0%
TTTGGGGATGCCCAAAAGCT+TGG - tig0022126:3079-3098 Msa1397040:intron 50.0%
CCAACTGAGCTAAGCTCACA+AGG + tig0022126:3144-3163 None:intergenic 50.0%
CCTTGTGAGCTTAGCTCAGT+TGG - tig0022126:3141-3160 Msa1397040:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - tig0022126:3145-3164 Msa1397040:intron 50.0%
GCCTTTACCACTGGGCTAAA+TGG + tig0022126:3615-3634 None:intergenic 50.0%
AGAGGGTGGAAACTAGGCTT+AGG - tig0022126:3772-3791 Msa1397040:intron 50.0%
CGACCCCACATACTGTGATA+AGG - tig0022126:3995-4014 Msa1397040:intron 50.0%
GTTGCAAAACGGAAAGCCTG+AGG + tig0022126:4133-4152 None:intergenic 50.0%
AAATAGGACACAGGGGGAGA+GGG + tig0022126:4186-4205 None:intergenic 50.0%
TAAATAGGACACAGGGGGAG+AGG + tig0022126:4187-4206 None:intergenic 50.0%
!!! GGGCTAGGTTGATTTTGAGG+TGG + tig0022126:4299-4318 None:intergenic 50.0%
!! GCCCTCATAGCTCTAAAAGC+TGG - tig0022126:4315-4334 Msa1397040:intron 50.0%
GCAGATCAAGCCCAAGCAAA+TGG + tig0022126:4414-4433 None:intergenic 50.0%
! GTCTGTTTCTCTCGGCCTAA+TGG + tig0022126:4531-4550 None:intergenic 50.0%
CAACAAATGGAGCCTGGATG+TGG + tig0022126:4569-4588 None:intergenic 50.0%
GAGATTCTGTTGTAGCCTGG+GGG - tig0022126:4617-4636 Msa1397040:intron 50.0%
CATCTATGCTTGGCCACACT+AGG - tig0022126:4857-4876 Msa1397040:intron 50.0%
CAAGACAAAGCAAGGCAACC+TGG + tig0022126:5043-5062 None:intergenic 50.0%
TAGCCAATCACAAACAGGGG+GGG + tig0022126:5200-5219 None:intergenic 50.0%
GCTATTGTGGTCAGGGATCT+AGG - tig0022126:5216-5235 Msa1397040:intron 50.0%
TGAACACCCTTATCGAGTGC+TGG - tig0022126:5363-5382 Msa1397040:intron 50.0%
AGTGATGGCCACTCCTGTAT+TGG - tig0022126:5807-5826 Msa1397040:intron 50.0%
GAAGCTGTTCGGCTGCATAT+AGG - tig0022126:5881-5900 Msa1397040:intron 50.0%
AGTGGCTGCCGTATTTAGCT+TGG - tig0022126:6097-6116 Msa1397040:intron 50.0%
GCGTCGTTCATCAGATCATG+AGG - tig0022126:6178-6197 Msa1397040:intron 50.0%
! GAGTTCATGGCTCTATGGGA+TGG - tig0022126:6221-6240 Msa1397040:intron 50.0%
!! TGTAGAGAGTGCTCGGGTTA+TGG - tig0022126:6375-6394 Msa1397040:CDS 50.0%
GATATCCAGACCGGAAAGAG+AGG - tig0022126:6473-6492 Msa1397040:CDS 50.0%
ACCTTTGTCGCAGGCAGATT+TGG - tig0022126:6999-7018 Msa1397040:intron 50.0%
TCCAAATCTGCCTGCGACAA+AGG + tig0022126:7003-7022 None:intergenic 50.0%
AGAAGGCCCTTTCTACTTCG+CGG - tig0022126:7022-7041 Msa1397040:intron 50.0%
!! CTCAGGTTGAAGCTGCAATC+AGG - tig0022126:7118-7137 Msa1397040:CDS 50.0%
CCCTAGCCGCGTATAACAAC+AGG + tig0022126:2160-2179 None:intergenic 55.0%
GTTGTTATACGCGGCTAGGG+CGG - tig0022126:2160-2179 Msa1397040:three_prime_UTR 55.0%
TAGGGCGGCGCTAAGTTACT+GGG - tig0022126:2175-2194 Msa1397040:three_prime_UTR 55.0%
CCCTCACGCGCACAAAGATT+GGG + tig0022126:2596-2615 None:intergenic 55.0%
CCCAATCTTTGTGCGCGTGA+GGG - tig0022126:2593-2612 Msa1397040:intron 55.0%
CCAATCTTTGTGCGCGTGAG+GGG - tig0022126:2594-2613 Msa1397040:intron 55.0%
TTGTATGGACCTCCTGGCAC+TGG - tig0022126:2971-2990 Msa1397040:CDS 55.0%
TGTATGGACCTCCTGGCACT+GGG - tig0022126:2972-2991 Msa1397040:CDS 55.0%
! ATGGTTTTCCCAGTGCCAGG+AGG + tig0022126:2983-3002 None:intergenic 55.0%
! AGCATGGTTTTCCCAGTGCC+AGG + tig0022126:2986-3005 None:intergenic 55.0%
TTCATGCATCTCTCTCCCCC+AGG + tig0022126:4635-4654 None:intergenic 55.0%
ACTCACCGGCAGTTAGTGGA+CGG + tig0022126:4788-4807 None:intergenic 55.0%
GTCAACTCACCGGCAGTTAG+TGG + tig0022126:4792-4811 None:intergenic 55.0%
! GGGTATTGCGGTCAACTCAC+CGG + tig0022126:4802-4821 None:intergenic 55.0%
AGCCAATCACAAACAGGGGG+GGG + tig0022126:5199-5218 None:intergenic 55.0%
GGAACCTAGACCTTTGTCGC+AGG - tig0022126:6990-7009 Msa1397040:intron 55.0%
TCTGCCTGCGACAAAGGTCT+AGG + tig0022126:6997-7016 None:intergenic 55.0%
GTCGCAGGCAGATTTGGAGA+AGG - tig0022126:7005-7024 Msa1397040:intron 55.0%
ACGTCGTTTCATGGCGAGTC+AGG - tig0022126:7090-7109 Msa1397040:intron 55.0%
TGGCGAGTCAGGTGATTCTC+AGG - tig0022126:7101-7120 Msa1397040:CDS 55.0%
CTAGGGCGGCGCTAAGTTAC+TGG - tig0022126:2174-2193 Msa1397040:three_prime_UTR 60.0%
GCCCAATCTTTGTGCGCGTG+AGG - tig0022126:2592-2611 Msa1397040:intron 60.0%
CCCCTCACGCGCACAAAGAT+TGG + tig0022126:2597-2616 None:intergenic 60.0%
! AAGGTCTGGGGCTCAAACCC+TGG - tig0022126:3187-3206 Msa1397040:CDS 60.0%
GATGTGCGAACAGCTCGCAC+AGG - tig0022126:4670-4689 Msa1397040:intron 60.0%
! CTCACCGGCAGTTAGTGGAC+GGG + tig0022126:4787-4806 None:intergenic 60.0%
CAATCACAAACAGGGGGGGG+GGG + tig0022126:5196-5215 None:intergenic 60.0%
CCAATCACAAACAGGGGGGG+GGG + tig0022126:5197-5216 None:intergenic 60.0%
GCCAATCACAAACAGGGGGG+GGG + tig0022126:5198-5217 None:intergenic 60.0%
TCAGCCCTCTCTTTCCGGTC+TGG + tig0022126:6481-6500 None:intergenic 60.0%
GGCACCCGTCCACTAACTGC+CGG - tig0022126:4780-4799 Msa1397040:intron 65.0%
CCCCCCCCCCTGTTTGTGAT+TGG - tig0022126:5194-5213 Msa1397040:intron 65.0%
Chromosome Type Strat End Strand Name
tig0022126 gene 1921 7498 1921 ID=Msa1397040;Name=Msa1397040
tig0022126 mRNA 1921 7498 1921 ID=Msa1397040-mRNA-1;Parent=Msa1397040;Name=Msa1397040-mRNA-1;_AED=0.29;_eAED=0.29;_QI=201|1|1|1|1|1|5|304|385
tig0022126 exon 1921 2428 1921 ID=Msa1397040-mRNA-1:exon:15879;Parent=Msa1397040-mRNA-1
tig0022126 exon 2744 3039 2744 ID=Msa1397040-mRNA-1:exon:15878;Parent=Msa1397040-mRNA-1
tig0022126 exon 3162 3320 3162 ID=Msa1397040-mRNA-1:exon:15877;Parent=Msa1397040-mRNA-1
tig0022126 exon 6319 6619 6319 ID=Msa1397040-mRNA-1:exon:15876;Parent=Msa1397040-mRNA-1
tig0022126 exon 7100 7498 7100 ID=Msa1397040-mRNA-1:exon:15875;Parent=Msa1397040-mRNA-1
tig0022126 five_prime_UTR 7298 7498 7298 ID=Msa1397040-mRNA-1:five_prime_utr;Parent=Msa1397040-mRNA-1
tig0022126 CDS 7100 7297 7100 ID=Msa1397040-mRNA-1:cds;Parent=Msa1397040-mRNA-1
tig0022126 CDS 6319 6619 6319 ID=Msa1397040-mRNA-1:cds;Parent=Msa1397040-mRNA-1
tig0022126 CDS 3162 3320 3162 ID=Msa1397040-mRNA-1:cds;Parent=Msa1397040-mRNA-1
tig0022126 CDS 2744 3039 2744 ID=Msa1397040-mRNA-1:cds;Parent=Msa1397040-mRNA-1
tig0022126 CDS 2225 2428 2225 ID=Msa1397040-mRNA-1:cds;Parent=Msa1397040-mRNA-1
tig0022126 three_prime_UTR 1921 2224 1921 ID=Msa1397040-mRNA-1:three_prime_utr;Parent=Msa1397040-mRNA-1
Gene Sequence

>Msa1397040

ATGGGAGGTTTTTCAGATACGAAGGTTTTACAAGACCTGTTGTTATACGCGGCTAGGGCGGCGCTAAGTTACTGGGTATTGGTCACGGGTCTCCGTTATCTTGACCCGAACCGTGAATCATCGAAGAAGGCTCTTGAACAGAAGAAAGAGATTGCTAAACGTCTTGGTCGTCCTCTTATTCAAACCAATTCCTATGAGGATGTAATAGCCTGTGATGTTATAAATCCTGACCACATCGATGTAGAATTTGACTCTATTGGGGGTCTTGACACAATTAAACAAACTTTGTTTGAGCTTGTTATTCTACCCCTGCAACGACCAGACTTGTTTTCGCATGGCAAACTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCTCCTGGCACTGGGAAAACCATGCTCGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAATGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCTCATAAACTTCAGCCATCCATTATATTCATCGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTTCATCAGATCATGAGGCTGTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCGCCACCGATCAGAGTGCTCGGGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGACTTCCTCAAGCCTTTGAAATTGGATATCCAGACCGGAAAGAGAGGGCTGATATATTGAAGGTTATCTTAAAGGGCGAGAAGGTTGAAGATAACATAGATTTCAGTTATATAGCTGGTTTATGCAAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCCGCATATTTTCCTATTAGAGAAATACTGCATAATGAGAAGAAAGGGGAACAGTCCTGTGAACCTAGACCTTTGTCGCAGGCAGATTTGGAGAAGGCCCTTTCTACTTCGCGGAAGACATCGGTTGCTGCAAATGAATACAGTAGAATGACATCAAGAACGTCGTTTCATGGCGAGTCAGGTGATTCTCAGGTTGAAGCTGCAATCAGGGAATTATCTAAGATTATGGGGGTTTCTCACATCCAAGTAGATGCTCAGGATTAA
Protein sequence

>Msa1397040

MGGFSDTKVLQDLLLYAARAALSYWVLVTGLRYLDPNRESSKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHIDVEFDSIGGLDTIKQTLFELVILPLQRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPSIIFIDEVDSFLGQRRSSDHEAVLNMKTEFMALWDGFATDQSARVMVLAATNRPSELDEAILRRLPQAFEIGYPDRKERADILKVILKGEKVEDNIDFSYIAGLCKGYTGSDLFDLCKKAAYFPIREILHNEKKGEQSCEPRPLSQADLEKALSTSRKTSVAANEYSRMTSRTSFHGESGDSQVEAAIRELSKIMGVSHIQVDAQD*