Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165500 | XP_003625963.1 | 98.636 | 220 | 2 | 1 | 1 | 220 | 1 | 219 | 8.63e-156 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165500 | G7KST0 | 98.636 | 220 | 2 | 1 | 1 | 220 | 1 | 219 | 4.12e-156 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1127260 | Msa1165500 | 0.853693 | 2.018951e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165500 | MtrunA17_Chr7g0269921 | 98.636 | 220 | 2 | 1 | 1 | 220 | 1 | 219 | 7.93e-160 | 440 |
| Msa1165500 | MtrunA17_Chr1g0194751 | 59.912 | 227 | 74 | 4 | 1 | 216 | 1 | 221 | 3.31e-78 | 234 |
| Msa1165500 | MtrunA17_Chr1g0208551 | 36.620 | 213 | 121 | 5 | 17 | 219 | 56 | 264 | 5.43e-46 | 153 |
| Msa1165500 | MtrunA17_Chr7g0251421 | 34.466 | 206 | 122 | 6 | 19 | 219 | 15 | 212 | 1.75e-37 | 130 |
| Msa1165500 | MtrunA17_Chr8g0361661 | 39.130 | 184 | 100 | 4 | 9 | 183 | 56 | 236 | 6.54e-35 | 125 |
| Msa1165500 | MtrunA17_Chr5g0417141 | 38.919 | 185 | 99 | 6 | 20 | 194 | 70 | 250 | 1.71e-30 | 114 |
| Msa1165500 | MtrunA17_Chr7g0217321 | 36.275 | 102 | 57 | 3 | 1 | 100 | 16 | 111 | 1.46e-16 | 75.5 |
| Msa1165500 | MtrunA17_Chr3g0099671 | 51.613 | 62 | 6 | 1 | 32 | 93 | 3 | 40 | 1.27e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165500 | AT1G02610.2 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 4.37e-60 | 187 |
| Msa1165500 | AT1G02610.1 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 4.89e-60 | 188 |
| Msa1165500 | AT4G02075.1 | 49.485 | 194 | 87 | 5 | 1 | 192 | 1 | 185 | 2.80e-54 | 173 |
| Msa1165500 | AT4G02075.3 | 48.969 | 194 | 88 | 5 | 1 | 192 | 1 | 185 | 4.60e-54 | 172 |
| Msa1165500 | AT2G01275.2 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.40e-44 | 149 |
| Msa1165500 | AT2G01275.4 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.40e-44 | 149 |
| Msa1165500 | AT2G01275.1 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.40e-44 | 149 |
| Msa1165500 | AT2G01275.3 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.56e-44 | 150 |
| Msa1165500 | AT2G01275.5 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.56e-44 | 150 |
| Msa1165500 | AT4G02075.2 | 49.112 | 169 | 75 | 5 | 1 | 167 | 1 | 160 | 1.16e-43 | 145 |
| Msa1165500 | AT2G02960.3 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.61e-33 | 121 |
| Msa1165500 | AT2G02960.2 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.61e-33 | 121 |
| Msa1165500 | AT2G02960.6 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.61e-33 | 121 |
| Msa1165500 | AT2G02960.4 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.61e-33 | 121 |
| Msa1165500 | AT2G02960.1 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.61e-33 | 121 |
| Msa1165500 | AT5G38070.1 | 36.612 | 183 | 93 | 5 | 15 | 186 | 49 | 219 | 4.61e-32 | 117 |
| Msa1165500 | AT3G47550.2 | 38.983 | 177 | 93 | 4 | 20 | 186 | 69 | 240 | 6.61e-30 | 111 |
| Msa1165500 | AT3G47550.3 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 7.62e-30 | 112 |
| Msa1165500 | AT3G47550.6 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 7.62e-30 | 112 |
| Msa1165500 | AT5G62460.1 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 5.94e-28 | 107 |
| Msa1165500 | AT5G62460.2 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 5.94e-28 | 107 |
| Msa1165500 | AT5G62460.3 | 39.674 | 184 | 99 | 4 | 20 | 194 | 91 | 271 | 6.05e-28 | 108 |
| Msa1165500 | AT1G14260.2 | 35.025 | 197 | 112 | 5 | 18 | 203 | 55 | 246 | 6.29e-27 | 104 |
| Msa1165500 | AT1G14260.1 | 35.025 | 197 | 112 | 5 | 18 | 203 | 55 | 246 | 6.29e-27 | 104 |
| Msa1165500 | AT1G14260.3 | 35.025 | 197 | 112 | 5 | 18 | 203 | 55 | 246 | 6.29e-27 | 104 |
| Msa1165500 | AT2G02960.5 | 43.066 | 137 | 68 | 3 | 20 | 149 | 43 | 176 | 4.74e-26 | 102 |
| Msa1165500 | AT3G47550.1 | 42.623 | 122 | 56 | 3 | 20 | 132 | 69 | 185 | 3.62e-23 | 93.6 |
| Msa1165500 | AT1G02610.3 | 37.984 | 129 | 73 | 4 | 70 | 194 | 2 | 127 | 1.06e-19 | 82.4 |
Find 48 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTAATCGATGATTTA+AGG | 0.158832 | 7_4:-57435617 | Msa1165500:CDS |
| AGAAAATTTAATACATTCAT+AGG | 0.223917 | 7_4:-57433172 | Msa1165500:three_prime_UTR |
| GATGATTTAAGGTTACTTTC+TGG | 0.231213 | 7_4:-57435606 | Msa1165500:CDS |
| CTTACGGTAAGAAGTGTAAA+TGG | 0.234459 | 7_4:+57433509 | Msa1165490:intron |
| TACATTCATAGAGTATTTAA+TGG | 0.256613 | 7_4:-57433216 | Msa1165500:exon |
| GAAGCACCTTGTTCTTGTTC+TGG | 0.299149 | 7_4:-57435528 | Msa1165500:CDS |
| CGCGTTTCACTGTCGATCAT+TGG | 0.320595 | 7_4:-57434311 | Msa1165500:CDS |
| ACAAGAACAAGGTGCTTCTA+AGG | 0.336965 | 7_4:+57435533 | Msa1165490:three_prime_UTR |
| ACAAGGTGCTTCTAAGGCTT+TGG | 0.357018 | 7_4:+57435539 | Msa1165490:three_prime_UTR |
| GTTGTAGGTCATTGTTCTAA+AGG | 0.358971 | 7_4:-57433386 | Msa1165500:intron |
| TTTGAAAACAAAGTGATCAT+TGG | 0.367671 | 7_4:-57435672 | Msa1165500:five_prime_UTR |
| AGCTTTCAAACTCTTCTTCA+TGG | 0.379338 | 7_4:+57435562 | Msa1165490:three_prime_UTR |
| TTCTTGTTCTGGAACTGTTA+AGG | 0.379888 | 7_4:-57435517 | Msa1165500:intron |
| TAGTGGTAGAGCTGCATTCC+GGG | 0.387977 | 7_4:+57434341 | Msa1165490:three_prime_UTR |
| TTAGTGGTAGAGCTGCATTC+CGG | 0.388354 | 7_4:+57434340 | Msa1165490:three_prime_UTR |
| TTGAAAACAAAGTGATCATT+GGG | 0.405202 | 7_4:-57435671 | Msa1165500:five_prime_UTR |
| TGGAGGAGGAGCTGTATATC+CGG | 0.422547 | 7_4:+57434724 | Msa1165490:three_prime_UTR |
| GTTACTAGTAAGACATTGTT+TGG | 0.431240 | 7_4:-57433561 | Msa1165500:CDS |
| AACGCGGTAAAGTACCTTAT+GGG | 0.451704 | 7_4:+57434671 | Msa1165490:intron |
| TAATCTTCGGTTCCACTTGT+GGG | 0.462880 | 7_4:+57433533 | Msa1165490:three_prime_UTR |
| ATGATGAAGCAATGCCCATA+AGG | 0.464358 | 7_4:-57434685 | Msa1165500:intron |
| GTGAAACGCGGTTCTGTTAG+TGG | 0.469197 | 7_4:+57434324 | Msa1165490:three_prime_UTR |
| GAGCCATTCTGAATAGCATT+AGG | 0.470162 | 7_4:-57433318 | Msa1165500:CDS |
| GTAATCTTCGGTTCCACTTG+TGG | 0.490070 | 7_4:+57433532 | Msa1165490:three_prime_UTR |
| CAGAATGGCTCCGATTGTCT+TGG | 0.492886 | 7_4:+57433330 | Msa1165490:three_prime_UTR |
| TACATAGTTACCAAGACAAT+CGG | 0.492892 | 7_4:-57433340 | Msa1165500:CDS |
| AATAGCATTAGGCGCTATCA+AGG | 0.494672 | 7_4:-57433307 | Msa1165500:CDS |
| TGTCTTGGTAACTATGTACA+TGG | 0.500550 | 7_4:+57433345 | Msa1165490:three_prime_UTR |
| AAGTGTAAATGGGTAATCTT+CGG | 0.501901 | 7_4:+57433520 | Msa1165490:three_prime_UTR |
| CAAAGATGGTGTAACGAGAA+AGG | 0.507130 | 7_4:-57435335 | Msa1165500:CDS |
| GGAGGAGGAGCTGTATATCC+GGG | 0.519973 | 7_4:+57434725 | Msa1165490:three_prime_UTR |
| TTACGGTAAGAAGTGTAAAT+GGG | 0.521582 | 7_4:+57433510 | Msa1165490:intron |
| GAAAATTTAATACATTCATA+GGG | 0.529541 | 7_4:-57433171 | Msa1165500:three_prime_UTR |
| TAATGGCAGAAATGAAGAGC+AGG | 0.545128 | 7_4:-57433199 | Msa1165500:three_prime_UTR |
| ATAGAGATTGCATACAAAGA+TGG | 0.547272 | 7_4:-57435349 | Msa1165500:CDS |
| AACATGTGAAATATGTCTCC+AGG | 0.548388 | 7_4:-57435306 | Msa1165500:intron |
| GTCATTGTTCTAAAGGCTTG+CGG | 0.555397 | 7_4:-57433379 | Msa1165500:CDS |
| GCGCCTAATGCTATTCAGAA+TGG | 0.556703 | 7_4:+57433315 | Msa1165490:three_prime_UTR |
| ACATCACTCTCTGATGAAGA+TGG | 0.559466 | 7_4:-57433271 | Msa1165500:CDS |
| AGATGGCAGAAATGAAGAGC+AGG | 0.567472 | 7_4:-57433254 | Msa1165500:CDS |
| TGTAATAGAAAGTGATTACC+CGG | 0.600485 | 7_4:-57434359 | Msa1165500:CDS |
| TGTTTGGTAGTGCCCACAAG+TGG | 0.604389 | 7_4:-57433545 | Msa1165500:CDS |
| ATAAGAGAAAGTGAGGTGGA+AGG | 0.645126 | 7_4:-57434385 | Msa1165500:CDS |
| AAACGCGATAAGAGAAAGTG+AGG | 0.650705 | 7_4:-57434392 | Msa1165500:CDS |
| CGCGATAAGAGAAAGTGAGG+TGG | 0.650995 | 7_4:-57434389 | Msa1165500:CDS |
| GTCTTGGTAACTATGTACAT+GGG | 0.665639 | 7_4:+57433346 | Msa1165490:three_prime_UTR |
| CAATGATCGACAGTGAAACG+CGG | 0.703113 | 7_4:+57434312 | Msa1165490:three_prime_UTR |
| ACAGTTCCAGAACAAGAACA+AGG | 0.719305 | 7_4:+57435522 | Msa1165490:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAACACATTTAAT+TGG | - | chr7_4:57434380-57434399 | Msa1165500:CDS | 10.0% |
| !! | TTTCATTCAAAATTAAAATA+CGG | + | chr7_4:57435395-57435414 | Msa1165490:intron | 10.0% |
| !! | AATAGAAAGAAAAAATAAAG+AGG | - | chr7_4:57433712-57433731 | Msa1165500:intron | 15.0% |
| !! | ATAGAAAGAAAAAATAAAGA+GGG | - | chr7_4:57433713-57433732 | Msa1165500:intron | 15.0% |
| !! | ATATAAGTCAAAATTAGATT+GGG | + | chr7_4:57433813-57433832 | Msa1165490:intron | 15.0% |
| !! | TATATAAGTCAAAATTAGAT+TGG | + | chr7_4:57433814-57433833 | Msa1165490:intron | 15.0% |
| !! | CTACAAATTATAATATCAAA+TGG | + | chr7_4:57433985-57434004 | Msa1165490:intron | 15.0% |
| !!! | CATTTGATATTATAATTTGT+AGG | - | chr7_4:57433983-57434002 | Msa1165500:intron | 15.0% |
| !!! | AAATTTGATAACACATTTTA+AGG | - | chr7_4:57434433-57434452 | Msa1165500:intron | 15.0% |
| !!! | AATTTGATAACACATTTTAA+GGG | - | chr7_4:57434434-57434453 | Msa1165500:intron | 15.0% |
| !!! | AAAAACTGTAAGTTATTTTT+CGG | + | chr7_4:57435264-57435283 | Msa1165490:intron | 15.0% |
| !!! | GTATTTTAATTTTGAATGAA+AGG | - | chr7_4:57435394-57435413 | Msa1165500:intron | 15.0% |
| !! | AGAAAATTTAATACATTCAT+AGG | - | chr7_4:57435638-57435657 | Msa1165500:exon | 15.0% |
| !! | GAAAATTTAATACATTCATA+GGG | - | chr7_4:57435639-57435658 | Msa1165500:exon | 15.0% |
| !!! | TATAATTTGTAGGAATTATC+AGG | - | chr7_4:57433993-57434012 | Msa1165500:intron | 20.0% |
| !! | TGCATGATAAATATAAAAGA+TGG | - | chr7_4:57434066-57434085 | Msa1165500:intron | 20.0% |
| !! | GCATGATAAATATAAAAGAT+GGG | - | chr7_4:57434067-57434086 | Msa1165500:intron | 20.0% |
| !!! | TCATTTATCTCTGATTTTTT+TGG | + | chr7_4:57434164-57434183 | Msa1165490:intron | 20.0% |
| !!! | ATTTGATAACACATTTTAAG+GGG | - | chr7_4:57434435-57434454 | Msa1165500:intron | 20.0% |
| !! | AAATAAAGTTGCATGAATTT+AGG | - | chr7_4:57434698-57434717 | Msa1165500:CDS | 20.0% |
| !! | AATAAAGTTGCATGAATTTA+GGG | - | chr7_4:57434699-57434718 | Msa1165500:CDS | 20.0% |
| !!! | TTTGTTATATAAACTCTTCT+AGG | + | chr7_4:57434799-57434818 | Msa1165490:intron | 20.0% |
| !!! | TACATTCATAGAGTATTTAA+TGG | - | chr7_4:57435649-57435668 | Msa1165500:exon | 20.0% |
| ! | TTTGAAAACAAAGTGATCAT+TGG | - | chr7_4:57433193-57433212 | Msa1165500:three_prime_UTR | 25.0% |
| ! | TTGAAAACAAAGTGATCATT+GGG | - | chr7_4:57433194-57433213 | Msa1165500:three_prime_UTR | 25.0% |
| ! | TGTTACTAATCGATGATTTA+AGG | - | chr7_4:57433248-57433267 | Msa1165500:CDS | 25.0% |
| ! | AATTATGTTGTGACGTAAAT+TGG | - | chr7_4:57433779-57433798 | Msa1165500:intron | 25.0% |
| ! | TTAAATTTCTCAGCTAATCA+TGG | - | chr7_4:57433937-57433956 | Msa1165500:intron | 25.0% |
| ! | GAAATGAAGATAGAACTAAA+GGG | + | chr7_4:57433963-57433982 | Msa1165490:intron | 25.0% |
| ! | TTATGTTCATTGTATGCATA+AGG | + | chr7_4:57434029-57434048 | Msa1165490:intron | 25.0% |
| !!! | TTTATCTCTGATTTTTTTGG+AGG | + | chr7_4:57434161-57434180 | Msa1165490:intron | 25.0% |
| !!! | CTTTTTGATTGAATTAAACG+CGG | + | chr7_4:57434213-57434232 | Msa1165490:intron | 25.0% |
| !!! | TTTGATAACACATTTTAAGG+GGG | - | chr7_4:57434436-57434455 | Msa1165500:intron | 25.0% |
| !! | TAATGCTATGCTATTTGATT+AGG | + | chr7_4:57434638-57434657 | Msa1165490:intron | 25.0% |
| !! | AGAAAACAATACACGTTTTT+GGG | + | chr7_4:57434891-57434910 | Msa1165490:intron | 25.0% |
| !! | TAGAAAACAATACACGTTTT+TGG | + | chr7_4:57434892-57434911 | Msa1165490:intron | 25.0% |
| !! | ACGATTACTTTCAAACTTTT+AGG | - | chr7_4:57435002-57435021 | Msa1165500:intron | 25.0% |
| !!! | TTTTTTTAGACATGAAAGCA+TGG | + | chr7_4:57435115-57435134 | Msa1165490:intron | 25.0% |
| !! | TTTAATTTAACCTGCAGTTA+GGG | - | chr7_4:57435160-57435179 | Msa1165500:intron | 25.0% |
| ! | TTCATAAAATGCCATTAGTA+CGG | + | chr7_4:57435451-57435470 | Msa1165490:intron | 25.0% |
| !!! | TTATGAACTACTTTTGTTGT+AGG | - | chr7_4:57435464-57435483 | Msa1165500:intron | 25.0% |
| GTGTTACCGTTTGAAAAATA+TGG | - | chr7_4:57433216-57433235 | Msa1165500:exon | 30.0% | |
| !! | CCTCTTCCATATTTTTCAAA+CGG | + | chr7_4:57433225-57433244 | Msa1165490:three_prime_UTR | 30.0% |
| ! | GATGATTTAAGGTTACTTTC+TGG | - | chr7_4:57433259-57433278 | Msa1165500:CDS | 30.0% |
| ATAGAGATTGCATACAAAGA+TGG | - | chr7_4:57433516-57433535 | Msa1165500:CDS | 30.0% | |
| GGAAATGAAGATAGAACTAA+AGG | + | chr7_4:57433964-57433983 | Msa1165490:intron | 30.0% | |
| TATTAAGTCTTAGCTACACA+TGG | - | chr7_4:57434271-57434290 | Msa1165500:intron | 30.0% | |
| !! | TTGATAACACATTTTAAGGG+GGG | - | chr7_4:57434437-57434456 | Msa1165500:intron | 30.0% |
| TGTAATAGAAAGTGATTACC+CGG | - | chr7_4:57434506-57434525 | Msa1165500:intron | 30.0% | |
| !! | TCAAACTTTTAGGTCACATT+TGG | - | chr7_4:57435012-57435031 | Msa1165500:intron | 30.0% |
| ! | CTTTAATTTAACCTGCAGTT+AGG | - | chr7_4:57435159-57435178 | Msa1165500:intron | 30.0% |
| GTTACTAGTAAGACATTGTT+TGG | - | chr7_4:57435304-57435323 | Msa1165500:intron | 30.0% | |
| AAGTGTAAATGGGTAATCTT+CGG | + | chr7_4:57435348-57435367 | Msa1165490:three_prime_UTR | 30.0% | |
| ! | TTACGGTAAGAAGTGTAAAT+GGG | + | chr7_4:57435358-57435377 | Msa1165490:three_prime_UTR | 30.0% |
| TACATAGTTACCAAGACAAT+CGG | - | chr7_4:57435525-57435544 | Msa1165500:CDS | 30.0% | |
| CCGTTTGAAAAATATGGAAG+AGG | - | chr7_4:57433222-57433241 | Msa1165500:exon | 35.0% | |
| AGCTTTCAAACTCTTCTTCA+TGG | + | chr7_4:57433306-57433325 | Msa1165490:three_prime_UTR | 35.0% | |
| !! | TTCTTGTTCTGGAACTGTTA+AGG | - | chr7_4:57433348-57433367 | Msa1165500:CDS | 35.0% |
| AACATGTGAAATATGTCTCC+AGG | - | chr7_4:57433559-57433578 | Msa1165500:CDS | 35.0% | |
| TAATCATCATCACACATACC+TGG | + | chr7_4:57433580-57433599 | Msa1165490:intron | 35.0% | |
| ATGTTGTGACGTAAATTGGA+TGG | - | chr7_4:57433783-57433802 | Msa1165500:intron | 35.0% | |
| TGTTGTGACGTAAATTGGAT+GGG | - | chr7_4:57433784-57433803 | Msa1165500:intron | 35.0% | |
| ! | TTTTTGCAGCAATATGAACC+CGG | - | chr7_4:57434122-57434141 | Msa1165500:intron | 35.0% |
| !!! | ATCTCTGATTTTTTTGGAGG+AGG | + | chr7_4:57434158-57434177 | Msa1165490:intron | 35.0% |
| ! | GGTGCAACTATTTTATACGT+TGG | - | chr7_4:57434300-57434319 | Msa1165500:intron | 35.0% |
| TTAGGGAAAATAACGAGTCA+AGG | - | chr7_4:57434716-57434735 | Msa1165500:CDS | 35.0% | |
| TAGGGAAAATAACGAGTCAA+GGG | - | chr7_4:57434717-57434736 | Msa1165500:CDS | 35.0% | |
| CTGAACTACTAGTACATAGT+CGG | + | chr7_4:57435065-57435084 | Msa1165490:intron | 35.0% | |
| GAAGCTGGTCAAATTAAAAC+TGG | - | chr7_4:57435201-57435220 | Msa1165500:intron | 35.0% | |
| CATGCAATGATGTATTCTGT+AGG | - | chr7_4:57435234-57435253 | Msa1165500:intron | 35.0% | |
| ! | CTTACGGTAAGAAGTGTAAA+TGG | + | chr7_4:57435359-57435378 | Msa1165490:three_prime_UTR | 35.0% |
| CGGAAATCAAGTACTACTTA+CGG | + | chr7_4:57435375-57435394 | Msa1165490:intron | 35.0% | |
| GTTGTAGGTCATTGTTCTAA+AGG | - | chr7_4:57435479-57435498 | Msa1165500:intron | 35.0% | |
| ! | GTCTTGGTAACTATGTACAT+GGG | + | chr7_4:57435522-57435541 | Msa1165490:three_prime_UTR | 35.0% |
| ! | TGTCTTGGTAACTATGTACA+TGG | + | chr7_4:57435523-57435542 | Msa1165490:three_prime_UTR | 35.0% |
| ! | ACAAGAACAAGGTGCTTCTA+AGG | + | chr7_4:57433335-57433354 | Msa1165490:three_prime_UTR | 40.0% |
| ACAGTTCCAGAACAAGAACA+AGG | + | chr7_4:57433346-57433365 | Msa1165490:three_prime_UTR | 40.0% | |
| CAAAGATGGTGTAACGAGAA+AGG | - | chr7_4:57433530-57433549 | Msa1165500:CDS | 40.0% | |
| !! | ACACGTATTTTGCTGTCGTT+AGG | - | chr7_4:57433756-57433775 | Msa1165500:intron | 40.0% |
| ATGATGAAGCAATGCCCATA+AGG | - | chr7_4:57434180-57434199 | Msa1165500:intron | 40.0% | |
| ! | AACGCGGTAAAGTACCTTAT+GGG | + | chr7_4:57434197-57434216 | Msa1165490:intron | 40.0% |
| ! | AAACGCGGTAAAGTACCTTA+TGG | + | chr7_4:57434198-57434217 | Msa1165490:intron | 40.0% |
| AAACGCGATAAGAGAAAGTG+AGG | - | chr7_4:57434473-57434492 | Msa1165500:intron | 40.0% | |
| ATAAGAGAAAGTGAGGTGGA+AGG | - | chr7_4:57434480-57434499 | Msa1165500:intron | 40.0% | |
| GTTGAATTGTCATTGCCAAC+TGG | - | chr7_4:57434746-57434765 | Msa1165500:intron | 40.0% | |
| !!! | ACCTTGTGAAAGCATTTTCC+TGG | - | chr7_4:57434847-57434866 | Msa1165500:intron | 40.0% |
| ACCAGGAAAATGCTTTCACA+AGG | + | chr7_4:57434851-57434870 | Msa1165490:intron | 40.0% | |
| ! | CATGAAAGCATGGTGTTTGT+GGG | + | chr7_4:57435105-57435124 | Msa1165490:intron | 40.0% |
| ! | ACATGAAAGCATGGTGTTTG+TGG | + | chr7_4:57435106-57435125 | Msa1165490:intron | 40.0% |
| TTCCCAACTGATATTGAAGC+TGG | - | chr7_4:57435186-57435205 | Msa1165500:intron | 40.0% | |
| GACCAGCTTCAATATCAGTT+GGG | + | chr7_4:57435191-57435210 | Msa1165490:intron | 40.0% | |
| TGACCAGCTTCAATATCAGT+TGG | + | chr7_4:57435192-57435211 | Msa1165490:intron | 40.0% | |
| TAATCTTCGGTTCCACTTGT+GGG | + | chr7_4:57435335-57435354 | Msa1165490:three_prime_UTR | 40.0% | |
| !! | GTCATTGTTCTAAAGGCTTG+CGG | - | chr7_4:57435486-57435505 | Msa1165500:intron | 40.0% |
| GAGCCATTCTGAATAGCATT+AGG | - | chr7_4:57435547-57435566 | Msa1165500:CDS | 40.0% | |
| AATAGCATTAGGCGCTATCA+AGG | - | chr7_4:57435558-57435577 | Msa1165500:CDS | 40.0% | |
| ACATCACTCTCTGATGAAGA+TGG | - | chr7_4:57435594-57435613 | Msa1165500:CDS | 40.0% | |
| TAATGGCAGAAATGAAGAGC+AGG | - | chr7_4:57435666-57435685 | Msa1165500:five_prime_UTR | 40.0% | |
| !! | ACAAGGTGCTTCTAAGGCTT+TGG | + | chr7_4:57433329-57433348 | Msa1165490:three_prime_UTR | 45.0% |
| ! | GAAGCACCTTGTTCTTGTTC+TGG | - | chr7_4:57433337-57433356 | Msa1165500:CDS | 45.0% |
| GGGAGAAAGAGTTATCTGTG+AGG | - | chr7_4:57433733-57433752 | Msa1165500:intron | 45.0% | |
| AGTCTTAGCTACACATGGCA+TGG | - | chr7_4:57434276-57434295 | Msa1165500:intron | 45.0% | |
| TTAGTGGTAGAGCTGCATTC+CGG | + | chr7_4:57434528-57434547 | Msa1165490:intron | 45.0% | |
| CAATGATCGACAGTGAAACG+CGG | + | chr7_4:57434556-57434575 | Msa1165490:intron | 45.0% | |
| TTGGGAAAAACCCTAACTGC+AGG | + | chr7_4:57435173-57435192 | Msa1165490:intron | 45.0% | |
| GTAATCTTCGGTTCCACTTG+TGG | + | chr7_4:57435336-57435355 | Msa1165490:three_prime_UTR | 45.0% | |
| CCATTAGTACGGCTGTATGT+AGG | + | chr7_4:57435440-57435459 | Msa1165490:intron | 45.0% | |
| CCTACATACAGCCGTACTAA+TGG | - | chr7_4:57435437-57435456 | Msa1165500:intron | 45.0% | |
| GCGCCTAATGCTATTCAGAA+TGG | + | chr7_4:57435553-57435572 | Msa1165490:three_prime_UTR | 45.0% | |
| AGATGGCAGAAATGAAGAGC+AGG | - | chr7_4:57435611-57435630 | Msa1165500:CDS | 45.0% | |
| TGGAGGAGGAGCTGTATATC+CGG | + | chr7_4:57434144-57434163 | Msa1165490:intron | 50.0% | |
| CTTAGCTACACATGGCATGG+AGG | - | chr7_4:57434279-57434298 | Msa1165500:intron | 50.0% | |
| CGCGATAAGAGAAAGTGAGG+TGG | - | chr7_4:57434476-57434495 | Msa1165500:intron | 50.0% | |
| TAGTGGTAGAGCTGCATTCC+GGG | + | chr7_4:57434527-57434546 | Msa1165490:intron | 50.0% | |
| GTGAAACGCGGTTCTGTTAG+TGG | + | chr7_4:57434544-57434563 | Msa1165490:intron | 50.0% | |
| CGCGTTTCACTGTCGATCAT+TGG | - | chr7_4:57434554-57434573 | Msa1165500:intron | 50.0% | |
| ATGCCAATTGCCCCAACACA+AGG | - | chr7_4:57434770-57434789 | Msa1165500:intron | 50.0% | |
| TGCCAATTGCCCCAACACAA+GGG | - | chr7_4:57434771-57434790 | Msa1165500:intron | 50.0% | |
| ! | TTCTAGGAGCCCTTGTGTTG+GGG | + | chr7_4:57434783-57434802 | Msa1165490:intron | 50.0% |
| ! | CTTCTAGGAGCCCTTGTGTT+GGG | + | chr7_4:57434784-57434803 | Msa1165490:intron | 50.0% |
| ! | TCTTCTAGGAGCCCTTGTGT+TGG | + | chr7_4:57434785-57434804 | Msa1165490:intron | 50.0% |
| !! | TGTTTGGTAGTGCCCACAAG+TGG | - | chr7_4:57435320-57435339 | Msa1165500:CDS | 50.0% |
| CAGAATGGCTCCGATTGTCT+TGG | + | chr7_4:57435538-57435557 | Msa1165490:three_prime_UTR | 50.0% | |
| GGAGGAGGAGCTGTATATCC+GGG | + | chr7_4:57434143-57434162 | Msa1165490:intron | 55.0% | |
| GGGGCAATTGGCATTCCAGT+TGG | + | chr7_4:57434764-57434783 | Msa1165490:intron | 55.0% | |
| AGCCCTTGTGTTGGGGCAAT+TGG | + | chr7_4:57434776-57434795 | Msa1165490:intron | 55.0% | |
| AGAGTCGTGACTCGTGTACC+AGG | + | chr7_4:57434868-57434887 | Msa1165490:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 57433141 | 57435746 | 57433141 | ID=Msa1165500;Name=Msa1165500 |
| chr7_4 | mRNA | 57433141 | 57435746 | 57433141 | ID=Msa1165500-mRNA-1;Parent=Msa1165500;Name=Msa1165500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=94|1|1|1|1|1|6|87|220 |
| chr7_4 | exon | 57433141 | 57433401 | 57433141 | ID=Msa1165500-mRNA-1:exon:17392;Parent=Msa1165500-mRNA-1 |
| chr7_4 | exon | 57433514 | 57433594 | 57433514 | ID=Msa1165500-mRNA-1:exon:17391;Parent=Msa1165500-mRNA-1 |
| chr7_4 | exon | 57434303 | 57434432 | 57434303 | ID=Msa1165500-mRNA-1:exon:17390;Parent=Msa1165500-mRNA-1 |
| chr7_4 | exon | 57434686 | 57434756 | 57434686 | ID=Msa1165500-mRNA-1:exon:17389;Parent=Msa1165500-mRNA-1 |
| chr7_4 | exon | 57435307 | 57435378 | 57435307 | ID=Msa1165500-mRNA-1:exon:17388;Parent=Msa1165500-mRNA-1 |
| chr7_4 | exon | 57435518 | 57435746 | 57435518 | ID=Msa1165500-mRNA-1:exon:17387;Parent=Msa1165500-mRNA-1 |
| chr7_4 | five_prime_UTR | 57435653 | 57435746 | 57435653 | ID=Msa1165500-mRNA-1:five_prime_utr;Parent=Msa1165500-mRNA-1 |
| chr7_4 | CDS | 57435518 | 57435652 | 57435518 | ID=Msa1165500-mRNA-1:cds;Parent=Msa1165500-mRNA-1 |
| chr7_4 | CDS | 57435307 | 57435378 | 57435307 | ID=Msa1165500-mRNA-1:cds;Parent=Msa1165500-mRNA-1 |
| chr7_4 | CDS | 57434686 | 57434756 | 57434686 | ID=Msa1165500-mRNA-1:cds;Parent=Msa1165500-mRNA-1 |
| chr7_4 | CDS | 57434303 | 57434432 | 57434303 | ID=Msa1165500-mRNA-1:cds;Parent=Msa1165500-mRNA-1 |
| chr7_4 | CDS | 57433514 | 57433594 | 57433514 | ID=Msa1165500-mRNA-1:cds;Parent=Msa1165500-mRNA-1 |
| chr7_4 | CDS | 57433228 | 57433401 | 57433228 | ID=Msa1165500-mRNA-1:cds;Parent=Msa1165500-mRNA-1 |
| chr7_4 | three_prime_UTR | 57433141 | 57433227 | 57433141 | ID=Msa1165500-mRNA-1:three_prime_utr;Parent=Msa1165500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
