AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127260 MtrunA17_Chr7g0269921 98.636 220 2 1 1 220 1 219 7.93e-160 440
Msa1127260 MtrunA17_Chr1g0194751 59.912 227 74 4 1 216 1 221 3.31e-78 234
Msa1127260 MtrunA17_Chr1g0208551 36.620 213 121 5 17 219 56 264 5.43e-46 153
Msa1127260 MtrunA17_Chr7g0251421 34.466 206 122 6 19 219 15 212 1.75e-37 130
Msa1127260 MtrunA17_Chr8g0361661 39.130 184 100 4 9 183 56 236 6.54e-35 125
Msa1127260 MtrunA17_Chr5g0417141 38.919 185 99 6 20 194 70 250 1.71e-30 114
Msa1127260 MtrunA17_Chr7g0217321 36.275 102 57 3 1 100 16 111 1.46e-16 75.5
Msa1127260 MtrunA17_Chr3g0099671 51.613 62 6 1 32 93 3 40 1.27e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127260 AT1G02610.2 50.505 198 89 5 1 194 1 193 4.37e-60 187
Msa1127260 AT1G02610.1 50.505 198 89 5 1 194 1 193 4.89e-60 188
Msa1127260 AT4G02075.1 49.485 194 87 5 1 192 1 185 2.80e-54 173
Msa1127260 AT4G02075.3 48.969 194 88 5 1 192 1 185 4.60e-54 172
Msa1127260 AT2G01275.2 43.103 174 89 5 16 185 55 222 2.40e-44 149
Msa1127260 AT2G01275.4 43.103 174 89 5 16 185 55 222 2.40e-44 149
Msa1127260 AT2G01275.1 43.103 174 89 5 16 185 55 222 2.40e-44 149
Msa1127260 AT2G01275.3 43.103 174 89 5 16 185 81 248 2.56e-44 150
Msa1127260 AT2G01275.5 43.103 174 89 5 16 185 81 248 2.56e-44 150
Msa1127260 AT4G02075.2 49.112 169 75 5 1 167 1 160 1.16e-43 145
Msa1127260 AT2G02960.3 38.342 193 107 4 20 203 43 232 2.61e-33 121
Msa1127260 AT2G02960.2 38.342 193 107 4 20 203 43 232 2.61e-33 121
Msa1127260 AT2G02960.6 38.342 193 107 4 20 203 43 232 2.61e-33 121
Msa1127260 AT2G02960.4 38.342 193 107 4 20 203 43 232 2.61e-33 121
Msa1127260 AT2G02960.1 38.342 193 107 4 20 203 43 232 2.61e-33 121
Msa1127260 AT5G38070.1 36.612 183 93 5 15 186 49 219 4.61e-32 117
Msa1127260 AT3G47550.2 38.983 177 93 4 20 186 69 240 6.61e-30 111
Msa1127260 AT3G47550.3 39.459 185 96 5 20 194 69 247 7.62e-30 112
Msa1127260 AT3G47550.6 39.459 185 96 5 20 194 69 247 7.62e-30 112
Msa1127260 AT5G62460.1 39.674 184 99 4 20 194 78 258 5.94e-28 107
Msa1127260 AT5G62460.2 39.674 184 99 4 20 194 78 258 5.94e-28 107
Msa1127260 AT5G62460.3 39.674 184 99 4 20 194 91 271 6.05e-28 108
Msa1127260 AT1G14260.2 35.025 197 112 5 18 203 55 246 6.29e-27 104
Msa1127260 AT1G14260.1 35.025 197 112 5 18 203 55 246 6.29e-27 104
Msa1127260 AT1G14260.3 35.025 197 112 5 18 203 55 246 6.29e-27 104
Msa1127260 AT2G02960.5 43.066 137 68 3 20 149 43 176 4.74e-26 102
Msa1127260 AT3G47550.1 42.623 122 56 3 20 132 69 185 3.62e-23 93.6
Msa1127260 AT1G02610.3 37.984 129 73 4 70 194 2 127 1.06e-19 82.4

Find 48 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACTAATCGATGATTTA+AGG 0.158832 7_3:+78779639 Msa1127260:CDS
AGAAAATTTAATACATTCAT+AGG 0.223917 7_3:+78782079 Msa1127260:three_prime_UTR
GATGATTTAAGGTTACTTTC+TGG 0.231213 7_3:+78779650 Msa1127260:CDS
CTTACGGTAAGAAGTGTAAA+TGG 0.234459 7_3:-78781742 Msa1127270:intron
TACATTCATAGAGTATTTAA+TGG 0.256613 7_3:+78782035 Msa1127260:exon
GAAGCACCTTGTTCTTGTTC+TGG 0.299149 7_3:+78779728 Msa1127260:CDS
CGCGTTTCACTGTCGATCAT+TGG 0.320595 7_3:+78780940 Msa1127260:CDS
ACAAGAACAAGGTGCTTCTA+AGG 0.336965 7_3:-78779723 Msa1127270:three_prime_UTR
ACAAGGTGCTTCTAAGGCTT+TGG 0.357018 7_3:-78779717 Msa1127270:three_prime_UTR
GTTGTAGGTCATTGTTCTAA+AGG 0.358971 7_3:+78781865 Msa1127260:intron
TTTGAAAACAAAGTGATCAT+TGG 0.367671 7_3:+78779584 Msa1127260:five_prime_UTR
AGCTTTCAAACTCTTCTTCA+TGG 0.379338 7_3:-78779694 Msa1127270:three_prime_UTR
TTCTTGTTCTGGAACTGTTA+AGG 0.379888 7_3:+78779739 Msa1127260:CDS
TAGTGGTAGAGCTGCATTCC+GGG 0.387977 7_3:-78780910 Msa1127270:three_prime_UTR
TTAGTGGTAGAGCTGCATTC+CGG 0.388354 7_3:-78780911 Msa1127270:three_prime_UTR
TTGAAAACAAAGTGATCATT+GGG 0.405202 7_3:+78779585 Msa1127260:five_prime_UTR
TGGAGGAGGAGCTGTATATC+CGG 0.422547 7_3:-78780527 Msa1127270:three_prime_UTR
GTTACTAGTAAGACATTGTT+TGG 0.431240 7_3:+78781690 Msa1127260:CDS
AACGCGGTAAAGTACCTTAT+GGG 0.451704 7_3:-78780580 Msa1127270:intron
TAATCTTCGGTTCCACTTGT+GGG 0.462880 7_3:-78781718 Msa1127270:three_prime_UTR
ATGATGAAGCAATGCCCATA+AGG 0.464358 7_3:+78780566 Msa1127260:CDS
GTGAAACGCGGTTCTGTTAG+TGG 0.469197 7_3:-78780927 Msa1127270:three_prime_UTR
GAGCCATTCTGAATAGCATT+AGG 0.470162 7_3:+78781933 Msa1127260:CDS
GTAATCTTCGGTTCCACTTG+TGG 0.490070 7_3:-78781719 Msa1127270:three_prime_UTR
CAGAATGGCTCCGATTGTCT+TGG 0.492886 7_3:-78781921 Msa1127270:three_prime_UTR
TACATAGTTACCAAGACAAT+CGG 0.492892 7_3:+78781911 Msa1127260:CDS
AATAGCATTAGGCGCTATCA+AGG 0.494672 7_3:+78781944 Msa1127260:CDS
TGTCTTGGTAACTATGTACA+TGG 0.500550 7_3:-78781906 Msa1127270:three_prime_UTR
AAGTGTAAATGGGTAATCTT+CGG 0.501901 7_3:-78781731 Msa1127270:three_prime_UTR
CAAAGATGGTGTAACGAGAA+AGG 0.507130 7_3:+78779921 Msa1127260:CDS
GGAGGAGGAGCTGTATATCC+GGG 0.519973 7_3:-78780526 Msa1127270:three_prime_UTR
TTACGGTAAGAAGTGTAAAT+GGG 0.521582 7_3:-78781741 Msa1127270:intron
GAAAATTTAATACATTCATA+GGG 0.529541 7_3:+78782080 Msa1127260:three_prime_UTR
TAATGGCAGAAATGAAGAGC+AGG 0.545128 7_3:+78782052 Msa1127260:three_prime_UTR
ATAGAGATTGCATACAAAGA+TGG 0.547272 7_3:+78779907 Msa1127260:CDS
AACATGTGAAATATGTCTCC+AGG 0.548388 7_3:+78779950 Msa1127260:CDS
GTCATTGTTCTAAAGGCTTG+CGG 0.555397 7_3:+78781872 Msa1127260:CDS
GCGCCTAATGCTATTCAGAA+TGG 0.556703 7_3:-78781936 Msa1127270:three_prime_UTR
ACATCACTCTCTGATGAAGA+TGG 0.559466 7_3:+78781980 Msa1127260:CDS
AGATGGCAGAAATGAAGAGC+AGG 0.567472 7_3:+78781997 Msa1127260:CDS
TGTAATAGAAAGTGATTACC+CGG 0.600485 7_3:+78780892 Msa1127260:CDS
TGTTTGGTAGTGCCCACAAG+TGG 0.604389 7_3:+78781706 Msa1127260:CDS
ATAAGAGAAAGTGAGGTGGA+AGG 0.645126 7_3:+78780866 Msa1127260:CDS
AAACGCGATAAGAGAAAGTG+AGG 0.650705 7_3:+78780859 Msa1127260:CDS
CGCGATAAGAGAAAGTGAGG+TGG 0.650995 7_3:+78780862 Msa1127260:CDS
GTCTTGGTAACTATGTACAT+GGG 0.665639 7_3:-78781905 Msa1127270:three_prime_UTR
CAATGATCGACAGTGAAACG+CGG 0.703113 7_3:-78780939 Msa1127270:three_prime_UTR
ACAGTTCCAGAACAAGAACA+AGG 0.719305 7_3:-78779734 Msa1127270:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATAACACATTTAAT+TGG + chr7_3:78780766-78780785 Msa1127260:intron 10.0%
!! TTTCATTCAAAATTAAAATA+CGG - chr7_3:78781781-78781800 Msa1127270:intron 10.0%
!! AATAGAAAGAAAAAATAAAG+AGG + chr7_3:78780099-78780118 Msa1127260:intron 15.0%
!! ATAGAAAGAAAAAATAAAGA+GGG + chr7_3:78780100-78780119 Msa1127260:intron 15.0%
!! ATATAAGTCAAAATTAGATT+GGG - chr7_3:78780200-78780219 Msa1127270:intron 15.0%
!! TATATAAGTCAAAATTAGAT+TGG - chr7_3:78780201-78780220 Msa1127270:intron 15.0%
!! CTACAAATTATAATATCAAA+TGG - chr7_3:78780371-78780390 Msa1127270:intron 15.0%
!!! CATTTGATATTATAATTTGT+AGG + chr7_3:78780369-78780388 Msa1127260:intron 15.0%
!!! AAATTTGATAACACATTTTA+AGG + chr7_3:78780819-78780838 Msa1127260:intron 15.0%
!!! AATTTGATAACACATTTTAA+GGG + chr7_3:78780820-78780839 Msa1127260:intron 15.0%
!!! AAAAACTGTAAGTTATTTTT+CGG - chr7_3:78781650-78781669 Msa1127270:intron 15.0%
!!! GTATTTTAATTTTGAATGAA+AGG + chr7_3:78781780-78781799 Msa1127260:intron 15.0%
!! AGAAAATTTAATACATTCAT+AGG + chr7_3:78782024-78782043 Msa1127260:CDS 15.0%
!! GAAAATTTAATACATTCATA+GGG + chr7_3:78782025-78782044 Msa1127260:CDS 15.0%
!!! TATAATTTGTAGGAATTATC+AGG + chr7_3:78780379-78780398 Msa1127260:intron 20.0%
!! TGCATGATAAATATAAAAGA+TGG + chr7_3:78780452-78780471 Msa1127260:intron 20.0%
!! GCATGATAAATATAAAAGAT+GGG + chr7_3:78780453-78780472 Msa1127260:intron 20.0%
!!! TCATTTATCTCTGATTTTTT+TGG - chr7_3:78780550-78780569 Msa1127270:three_prime_UTR 20.0%
!!! ATTTGATAACACATTTTAAG+GGG + chr7_3:78780821-78780840 Msa1127260:intron 20.0%
!! AAATAAAGTTGCATGAATTT+AGG + chr7_3:78781084-78781103 Msa1127260:intron 20.0%
!! AATAAAGTTGCATGAATTTA+GGG + chr7_3:78781085-78781104 Msa1127260:intron 20.0%
!!! TTTGTTATATAAACTCTTCT+AGG - chr7_3:78781185-78781204 Msa1127270:intron 20.0%
!!! TACATTCATAGAGTATTTAA+TGG + chr7_3:78782035-78782054 Msa1127260:exon 20.0%
! TTTGAAAACAAAGTGATCAT+TGG + chr7_3:78779584-78779603 Msa1127260:five_prime_UTR 25.0%
! TTGAAAACAAAGTGATCATT+GGG + chr7_3:78779585-78779604 Msa1127260:five_prime_UTR 25.0%
! TGTTACTAATCGATGATTTA+AGG + chr7_3:78779639-78779658 Msa1127260:CDS 25.0%
! AATTATGTTGTGACGTAAAT+TGG + chr7_3:78780166-78780185 Msa1127260:intron 25.0%
! TTAAATTTCTCAGCTAATCA+TGG + chr7_3:78780323-78780342 Msa1127260:intron 25.0%
! GAAATGAAGATAGAACTAAA+GGG - chr7_3:78780349-78780368 Msa1127270:intron 25.0%
! TTATGTTCATTGTATGCATA+AGG - chr7_3:78780415-78780434 Msa1127270:intron 25.0%
!!! TTTATCTCTGATTTTTTTGG+AGG - chr7_3:78780547-78780566 Msa1127270:three_prime_UTR 25.0%
!!! CTTTTTGATTGAATTAAACG+CGG - chr7_3:78780599-78780618 Msa1127270:intron 25.0%
!!! TTTGATAACACATTTTAAGG+GGG + chr7_3:78780822-78780841 Msa1127260:intron 25.0%
!! TAATGCTATGCTATTTGATT+AGG - chr7_3:78781024-78781043 Msa1127270:intron 25.0%
!! AGAAAACAATACACGTTTTT+GGG - chr7_3:78781277-78781296 Msa1127270:intron 25.0%
!! TAGAAAACAATACACGTTTT+TGG - chr7_3:78781278-78781297 Msa1127270:intron 25.0%
!! ACGATTACTTTCAAACTTTT+AGG + chr7_3:78781388-78781407 Msa1127260:intron 25.0%
!!! TTTTTTTAGACATGAAAGCA+TGG - chr7_3:78781501-78781520 Msa1127270:intron 25.0%
!! TTTAATTTAACCTGCAGTTA+GGG + chr7_3:78781546-78781565 Msa1127260:intron 25.0%
! TTCATAAAATGCCATTAGTA+CGG - chr7_3:78781837-78781856 Msa1127270:intron 25.0%
!!! TTATGAACTACTTTTGTTGT+AGG + chr7_3:78781850-78781869 Msa1127260:intron 25.0%
GTGTTACCGTTTGAAAAATA+TGG + chr7_3:78779607-78779626 Msa1127260:exon 30.0%
!! CCTCTTCCATATTTTTCAAA+CGG - chr7_3:78779616-78779635 Msa1127270:three_prime_UTR 30.0%
! GATGATTTAAGGTTACTTTC+TGG + chr7_3:78779650-78779669 Msa1127260:CDS 30.0%
ATAGAGATTGCATACAAAGA+TGG + chr7_3:78779907-78779926 Msa1127260:CDS 30.0%
TAATCATCATCATACATACC+TGG - chr7_3:78779971-78779990 Msa1127270:intron 30.0%
GGAAATGAAGATAGAACTAA+AGG - chr7_3:78780350-78780369 Msa1127270:intron 30.0%
TATTAAGTCTTAGCTACACA+TGG + chr7_3:78780657-78780676 Msa1127260:intron 30.0%
!! TTGATAACACATTTTAAGGG+GGG + chr7_3:78780823-78780842 Msa1127260:intron 30.0%
TGTAATAGAAAGTGATTACC+CGG + chr7_3:78780892-78780911 Msa1127260:CDS 30.0%
!! TCAAACTTTTAGGTCACATT+TGG + chr7_3:78781398-78781417 Msa1127260:intron 30.0%
! CTTTAATTTAACCTGCAGTT+AGG + chr7_3:78781545-78781564 Msa1127260:intron 30.0%
GTTACTAGTAAGACATTGTT+TGG + chr7_3:78781690-78781709 Msa1127260:CDS 30.0%
AAGTGTAAATGGGTAATCTT+CGG - chr7_3:78781734-78781753 Msa1127270:three_prime_UTR 30.0%
! TTACGGTAAGAAGTGTAAAT+GGG - chr7_3:78781744-78781763 Msa1127270:intron 30.0%
TACATAGTTACCAAGACAAT+CGG + chr7_3:78781911-78781930 Msa1127260:CDS 30.0%
CCGTTTGAAAAATATGGAAG+AGG + chr7_3:78779613-78779632 Msa1127260:exon 35.0%
AGCTTTCAAACTCTTCTTCA+TGG - chr7_3:78779697-78779716 Msa1127270:three_prime_UTR 35.0%
!! TTCTTGTTCTGGAACTGTTA+AGG + chr7_3:78779739-78779758 Msa1127260:CDS 35.0%
AACATGTGAAATATGTCTCC+AGG + chr7_3:78779950-78779969 Msa1127260:CDS 35.0%
ATGTTGTGACGTAAATTGGA+TGG + chr7_3:78780170-78780189 Msa1127260:intron 35.0%
TGTTGTGACGTAAATTGGAT+GGG + chr7_3:78780171-78780190 Msa1127260:intron 35.0%
! TTTTTGCAGCAATATGAACC+CGG + chr7_3:78780508-78780527 Msa1127260:intron 35.0%
!!! ATCTCTGATTTTTTTGGAGG+AGG - chr7_3:78780544-78780563 Msa1127270:three_prime_UTR 35.0%
! GGTGCAACTATTTTATACGT+TGG + chr7_3:78780686-78780705 Msa1127260:intron 35.0%
TTAGGGAAAATAACGAGTCA+AGG + chr7_3:78781102-78781121 Msa1127260:intron 35.0%
TAGGGAAAATAACGAGTCAA+GGG + chr7_3:78781103-78781122 Msa1127260:intron 35.0%
CTGAACTACTAGTACATAGT+CGG - chr7_3:78781451-78781470 Msa1127270:intron 35.0%
GAAGCTGGTCAAATTAAAAC+TGG + chr7_3:78781587-78781606 Msa1127260:intron 35.0%
CATGCAATGATGTATTCTGT+AGG + chr7_3:78781620-78781639 Msa1127260:intron 35.0%
! CTTACGGTAAGAAGTGTAAA+TGG - chr7_3:78781745-78781764 Msa1127270:intron 35.0%
CGGAAATCAAGTACTACTTA+CGG - chr7_3:78781761-78781780 Msa1127270:intron 35.0%
GTTGTAGGTCATTGTTCTAA+AGG + chr7_3:78781865-78781884 Msa1127260:intron 35.0%
! GTCTTGGTAACTATGTACAT+GGG - chr7_3:78781908-78781927 Msa1127270:three_prime_UTR 35.0%
! TGTCTTGGTAACTATGTACA+TGG - chr7_3:78781909-78781928 Msa1127270:three_prime_UTR 35.0%
! ACAAGAACAAGGTGCTTCTA+AGG - chr7_3:78779726-78779745 Msa1127270:three_prime_UTR 40.0%
ACAGTTCCAGAACAAGAACA+AGG - chr7_3:78779737-78779756 Msa1127270:three_prime_UTR 40.0%
CAAAGATGGTGTAACGAGAA+AGG + chr7_3:78779921-78779940 Msa1127260:CDS 40.0%
!! ACACGTATTTTGCTGTCGTT+AGG + chr7_3:78780143-78780162 Msa1127260:intron 40.0%
ATGATGAAGCAATGCCCATA+AGG + chr7_3:78780566-78780585 Msa1127260:CDS 40.0%
! AACGCGGTAAAGTACCTTAT+GGG - chr7_3:78780583-78780602 Msa1127270:intron 40.0%
! AAACGCGGTAAAGTACCTTA+TGG - chr7_3:78780584-78780603 Msa1127270:intron 40.0%
AAACGCGATAAGAGAAAGTG+AGG + chr7_3:78780859-78780878 Msa1127260:CDS 40.0%
ATAAGAGAAAGTGAGGTGGA+AGG + chr7_3:78780866-78780885 Msa1127260:CDS 40.0%
GTTGAATTGTCATTGCCAAC+TGG + chr7_3:78781132-78781151 Msa1127260:intron 40.0%
!!! ACCTTGTGAAAGCATTTTCC+TGG + chr7_3:78781233-78781252 Msa1127260:intron 40.0%
ACCAGGAAAATGCTTTCACA+AGG - chr7_3:78781237-78781256 Msa1127270:intron 40.0%
! CATGAAAGCATGGTGTTTGT+GGG - chr7_3:78781491-78781510 Msa1127270:intron 40.0%
! ACATGAAAGCATGGTGTTTG+TGG - chr7_3:78781492-78781511 Msa1127270:intron 40.0%
TTCCCAACTGATATTGAAGC+TGG + chr7_3:78781572-78781591 Msa1127260:intron 40.0%
GACCAGCTTCAATATCAGTT+GGG - chr7_3:78781577-78781596 Msa1127270:intron 40.0%
TGACCAGCTTCAATATCAGT+TGG - chr7_3:78781578-78781597 Msa1127270:intron 40.0%
TAATCTTCGGTTCCACTTGT+GGG - chr7_3:78781721-78781740 Msa1127270:three_prime_UTR 40.0%
!! GTCATTGTTCTAAAGGCTTG+CGG + chr7_3:78781872-78781891 Msa1127260:CDS 40.0%
GAGCCATTCTGAATAGCATT+AGG + chr7_3:78781933-78781952 Msa1127260:CDS 40.0%
AATAGCATTAGGCGCTATCA+AGG + chr7_3:78781944-78781963 Msa1127260:CDS 40.0%
ACATCACTCTCTGATGAAGA+TGG + chr7_3:78781980-78781999 Msa1127260:CDS 40.0%
TAATGGCAGAAATGAAGAGC+AGG + chr7_3:78782052-78782071 Msa1127260:three_prime_UTR 40.0%
!! ACAAGGTGCTTCTAAGGCTT+TGG - chr7_3:78779720-78779739 Msa1127270:three_prime_UTR 45.0%
! GAAGCACCTTGTTCTTGTTC+TGG + chr7_3:78779728-78779747 Msa1127260:CDS 45.0%
GGGAGAAAGAGTTATCTGTG+AGG + chr7_3:78780120-78780139 Msa1127260:intron 45.0%
AGTCTTAGCTACACATGGCA+TGG + chr7_3:78780662-78780681 Msa1127260:intron 45.0%
TTAGTGGTAGAGCTGCATTC+CGG - chr7_3:78780914-78780933 Msa1127270:three_prime_UTR 45.0%
CAATGATCGACAGTGAAACG+CGG - chr7_3:78780942-78780961 Msa1127270:three_prime_UTR 45.0%
TTGGGAAAAACCCTAACTGC+AGG - chr7_3:78781559-78781578 Msa1127270:intron 45.0%
GTAATCTTCGGTTCCACTTG+TGG - chr7_3:78781722-78781741 Msa1127270:three_prime_UTR 45.0%
CCATTAGTACGGCTGTATGT+AGG - chr7_3:78781826-78781845 Msa1127270:intron 45.0%
CCTACATACAGCCGTACTAA+TGG + chr7_3:78781823-78781842 Msa1127260:intron 45.0%
GCGCCTAATGCTATTCAGAA+TGG - chr7_3:78781939-78781958 Msa1127270:three_prime_UTR 45.0%
AGATGGCAGAAATGAAGAGC+AGG + chr7_3:78781997-78782016 Msa1127260:CDS 45.0%
TGGAGGAGGAGCTGTATATC+CGG - chr7_3:78780530-78780549 Msa1127270:three_prime_UTR 50.0%
CTTAGCTACACATGGCATGG+AGG + chr7_3:78780665-78780684 Msa1127260:intron 50.0%
CGCGATAAGAGAAAGTGAGG+TGG + chr7_3:78780862-78780881 Msa1127260:CDS 50.0%
TAGTGGTAGAGCTGCATTCC+GGG - chr7_3:78780913-78780932 Msa1127270:three_prime_UTR 50.0%
GTGAAACGCGGTTCTGTTAG+TGG - chr7_3:78780930-78780949 Msa1127270:three_prime_UTR 50.0%
CGCGTTTCACTGTCGATCAT+TGG + chr7_3:78780940-78780959 Msa1127260:CDS 50.0%
ATGCCAATTGCCCCAACACA+AGG + chr7_3:78781156-78781175 Msa1127260:intron 50.0%
TGCCAATTGCCCCAACACAA+GGG + chr7_3:78781157-78781176 Msa1127260:intron 50.0%
! TTCTAGGAGCCCTTGTGTTG+GGG - chr7_3:78781169-78781188 Msa1127270:intron 50.0%
! CTTCTAGGAGCCCTTGTGTT+GGG - chr7_3:78781170-78781189 Msa1127270:intron 50.0%
! TCTTCTAGGAGCCCTTGTGT+TGG - chr7_3:78781171-78781190 Msa1127270:intron 50.0%
!! TGTTTGGTAGTGCCCACAAG+TGG + chr7_3:78781706-78781725 Msa1127260:CDS 50.0%
CAGAATGGCTCCGATTGTCT+TGG - chr7_3:78781924-78781943 Msa1127270:three_prime_UTR 50.0%
GGAGGAGGAGCTGTATATCC+GGG - chr7_3:78780529-78780548 Msa1127270:three_prime_UTR 55.0%
GGGGCAATTGGCATTCCAGT+TGG - chr7_3:78781150-78781169 Msa1127270:intron 55.0%
AGCCCTTGTGTTGGGGCAAT+TGG - chr7_3:78781162-78781181 Msa1127270:intron 55.0%
AGAGTCGTGACTCGTGTACC+AGG - chr7_3:78781254-78781273 Msa1127270:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78779532 78782132 78779532 ID=Msa1127260;Name=Msa1127260
chr7_3 mRNA 78779532 78782132 78779532 ID=Msa1127260-mRNA-1;Parent=Msa1127260;Name=Msa1127260-mRNA-1;_AED=0.15;_eAED=0.15;_QI=94|1|1|1|1|1|6|87|220
chr7_3 exon 78779532 78779760 78779532 ID=Msa1127260-mRNA-1:exon:22083;Parent=Msa1127260-mRNA-1
chr7_3 exon 78779900 78779971 78779900 ID=Msa1127260-mRNA-1:exon:22084;Parent=Msa1127260-mRNA-1
chr7_3 exon 78780517 78780587 78780517 ID=Msa1127260-mRNA-1:exon:22085;Parent=Msa1127260-mRNA-1
chr7_3 exon 78780841 78780970 78780841 ID=Msa1127260-mRNA-1:exon:22086;Parent=Msa1127260-mRNA-1
chr7_3 exon 78781679 78781759 78781679 ID=Msa1127260-mRNA-1:exon:22087;Parent=Msa1127260-mRNA-1
chr7_3 exon 78781872 78782132 78781872 ID=Msa1127260-mRNA-1:exon:22088;Parent=Msa1127260-mRNA-1
chr7_3 five_prime_UTR 78779532 78779625 78779532 ID=Msa1127260-mRNA-1:five_prime_utr;Parent=Msa1127260-mRNA-1
chr7_3 CDS 78779626 78779760 78779626 ID=Msa1127260-mRNA-1:cds;Parent=Msa1127260-mRNA-1
chr7_3 CDS 78779900 78779971 78779900 ID=Msa1127260-mRNA-1:cds;Parent=Msa1127260-mRNA-1
chr7_3 CDS 78780517 78780587 78780517 ID=Msa1127260-mRNA-1:cds;Parent=Msa1127260-mRNA-1
chr7_3 CDS 78780841 78780970 78780841 ID=Msa1127260-mRNA-1:cds;Parent=Msa1127260-mRNA-1
chr7_3 CDS 78781679 78781759 78781679 ID=Msa1127260-mRNA-1:cds;Parent=Msa1127260-mRNA-1
chr7_3 CDS 78781872 78782045 78781872 ID=Msa1127260-mRNA-1:cds;Parent=Msa1127260-mRNA-1
chr7_3 three_prime_UTR 78782046 78782132 78782046 ID=Msa1127260-mRNA-1:three_prime_utr;Parent=Msa1127260-mRNA-1
Gene Sequence

>Msa1127260

ATGGAAGAGGTTGTGTTACTAATCGATGATTTAAGGTTACTTTCTGGAATTTCTCGCTGTAGAATTTGCCATGAAGAAGAGTTTGAAAGCTCCAAAGCCTTAGAAGCACCTTGTTCTTGTTCTGGAACTGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAACGAGAAAGGAAATACAACATGTGAAATATGTCTCCAGCAATATGAACCCGGATATACAGCTCCTCCTCCAAAAAAATCAGAGATAAATGATGAAGCAATGCCCATAAGGGGGGAGCAAGAAGCTTCAAACGCGATAAGAGAAAGTGAGGTGGAAGGAATTGTAATAGAAAGTGATTACCCGGAATGCAGCTCTACCACTAACAGAACCGCGTTTCACTGTCGATCATTGGCAATAGCTTTTACGCTTGTGTTACTAGTAAGACATTGTTTGGTAGTGCCCACAAGTGGAACCGAAGATTACCCATTTACACTTCTTACCGTCATTGTTCTAAAGGCTTGCGGAATTATTATACCCATGTACATAGTTACCAAGACAATCGGAGCCATTCTGAATAGCATTAGGCGCTATCAAGGTTCTGACTACGACACATCACTCTCTGATGAAGATGGCAGAAATGAAGAGCAGGACGAAGAAAATTTAATACATTCATAG
Protein sequence

>Msa1127260

MEEVVLLIDDLRLLSGISRCRICHEEEFESSKALEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSEINDEAMPIRGEQEASNAIRESEVEGIVIESDYPECSSTTNRTAFHCRSLAIAFTLVLLVRHCLVVPTSGTEDYPFTLLTVIVLKACGIIIPMYIVTKTIGAILNSIRRYQGSDYDTSLSDEDGRNEEQDEENLIHS*