AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166880 MtrunA17_Chr7g0268041 97.921 481 9 1 1 480 1 481 0.0 976
Msa1166880 MtrunA17_Chr1g0176391 61.237 485 160 9 14 480 12 486 0.0 573
Msa1166880 MtrunA17_Chr2g0307041 50.000 104 52 0 67 170 16 119 1.67e-22 99.4
Msa1166880 MtrunA17_Chr4g0073651 42.857 119 65 1 66 184 5 120 1.38e-19 91.3
Msa1166880 MtrunA17_Chr1g0184441 45.545 101 54 1 64 163 526 626 2.08e-16 82.4
Msa1166880 MtrunA17_Chr8g0376151 43.269 104 59 0 70 173 600 703 2.60e-14 75.9
Msa1166880 MtrunA17_Chr5g0434681 44.737 76 42 0 70 145 620 695 1.00e-12 70.9
Msa1166880 MtrunA17_Chr3g0093241 33.714 175 92 6 70 243 334 485 1.38e-11 66.6
Msa1166880 MtrunA17_Chr4g0049631 32.692 104 70 0 66 169 299 402 5.84e-11 64.3
Msa1166880 MtrunA17_Chr4g0003901 41.237 97 57 0 70 166 289 385 8.35e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166880 AT5G06560.1 48.330 509 216 12 14 478 13 518 1.42e-146 429
Msa1166880 AT3G11850.2 42.828 495 223 12 33 478 21 504 1.53e-118 357
Msa1166880 AT3G11850.1 42.828 495 223 12 33 478 21 504 1.53e-118 357
Msa1166880 AT3G54740.3 39.413 477 201 14 22 471 16 431 4.12e-89 279
Msa1166880 AT3G54740.6 39.413 477 201 14 22 471 16 431 4.12e-89 279
Msa1166880 AT3G54740.2 39.413 477 201 14 22 471 16 431 4.12e-89 279
Msa1166880 AT3G54740.5 39.413 477 201 14 22 471 16 431 4.12e-89 279
Msa1166880 AT3G54740.8 40.233 430 179 10 59 471 15 383 3.20e-88 275
Msa1166880 AT3G54740.1 40.233 430 179 10 59 471 15 383 3.20e-88 275
Msa1166880 AT3G54740.7 40.233 430 179 10 59 471 15 383 3.20e-88 275
Msa1166880 AT3G54740.4 40.233 430 179 10 59 471 15 383 3.20e-88 275
Msa1166880 AT5G16720.1 43.966 116 59 1 54 169 350 459 1.38e-20 95.5
Msa1166880 AT4G30830.1 44.444 108 60 0 64 171 12 119 1.32e-19 90.5
Msa1166880 AT4G30830.2 44.444 108 60 0 64 171 12 119 1.32e-19 90.5
Msa1166880 AT5G57830.1 44.697 132 65 1 45 176 2 125 6.34e-19 89.0
Msa1166880 AT2G24140.2 44.340 106 59 0 65 170 14 119 1.66e-17 84.0
Msa1166880 AT2G24140.3 44.340 106 59 0 65 170 14 119 1.66e-17 84.0
Msa1166880 AT1G70750.1 44.000 100 56 0 70 169 416 515 2.21e-15 79.3
Msa1166880 AT4G13630.2 42.308 130 71 3 40 167 195 322 7.02e-15 77.4
Msa1166880 AT4G13630.1 42.308 130 71 3 40 167 195 322 7.02e-15 77.4
Msa1166880 AT2G30690.1 41.584 101 58 1 64 163 609 709 2.86e-14 75.9
Msa1166880 AT2G30690.2 41.584 101 58 1 64 163 609 709 2.86e-14 75.9
Msa1166880 AT1G04890.1 49.474 95 48 0 70 164 114 208 1.62e-13 72.8
Msa1166880 AT1G08800.2 37.391 115 72 0 49 163 872 986 2.07e-13 73.6
Msa1166880 AT1G08800.4 37.391 115 72 0 49 163 872 986 2.07e-13 73.6
Msa1166880 AT1G08800.3 37.391 115 72 0 49 163 872 986 2.07e-13 73.6
Msa1166880 AT1G08800.1 37.391 115 72 0 49 163 872 986 2.07e-13 73.6
Msa1166880 AT4G13160.1 44.660 103 57 0 62 164 109 211 6.06e-13 69.7
Msa1166880 AT1G74830.1 42.056 107 58 2 70 175 305 408 6.61e-13 71.2
Msa1166880 AT2G24140.4 50.000 68 34 0 103 170 1 68 1.02e-11 65.9
Msa1166880 AT2G24140.1 50.000 68 34 0 103 170 1 68 1.02e-11 65.9
Msa1166880 AT1G18990.1 34.337 166 96 4 27 191 268 421 3.43e-11 65.9

Find 168 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGATCGTTTGAGGAATT+TGG 0.149872 7_4:+59037083 Msa1166880:CDS
ATTATCTACCTTCTTAAAAT+TGG 0.151355 7_4:-59037340 None:intergenic
TAGAGGAATTGTTGTATAAA+AGG 0.183383 7_4:+59036839 Msa1166880:CDS
AAACAGCGCTGCAACTTTCT+AGG 0.214289 7_4:-59039091 None:intergenic
CACCGAACGGATCCAATTCT+TGG 0.235610 7_4:-59036509 None:intergenic
AGGGAAGAATGATAGTAATT+TGG 0.251764 7_4:-59035940 None:intergenic
TATATTACATTACATGGATT+TGG 0.256423 7_4:+59036405 Msa1166880:exon
GGCGTTGTTCGCGTTGAAAT+TGG 0.298444 7_4:+59036586 Msa1166880:CDS
CCGAACGATGTTCCAAGAAT+TGG 0.298688 7_4:+59036497 Msa1166880:CDS
CAAAACAAGCTGTGCTTTAT+CGG 0.300589 7_4:-59037580 None:intergenic
GTAACAACTCCTAGGGAGTT+TGG 0.317502 7_4:+59037450 Msa1166880:CDS
GCGTTGTTCGCGTTGAAATT+GGG 0.320768 7_4:+59036587 Msa1166880:CDS
TCAAGATTTGTGTTCTGAAT+TGG 0.320822 7_4:+59036660 Msa1166880:CDS
TGTACAGATTTGTGTTCAAT+TGG 0.324763 7_4:+59036254 Msa1166880:intron
TCCTAGGGAGTTTGGAAATC+AGG 0.328062 7_4:+59037458 Msa1166880:CDS
AGGAAGAGGAATAATAATAA+TGG 0.334301 7_4:+59037303 Msa1166880:CDS
GGGGTGTATGTTTGGTTTGG+AGG 0.337233 7_4:-59035960 None:intergenic
TTCACTTACGTGTGAAGTTC+AGG 0.346138 7_4:+59036876 Msa1166880:CDS
TCATGTGACTCGTCGTCGTT+TGG 0.362096 7_4:+59037237 Msa1166880:CDS
TCGACAACCTTCCTTGTGTT+GGG 0.362381 7_4:+59035878 Msa1166880:five_prime_UTR
AGGAATAATAATAATGGGTC+AGG 0.364109 7_4:+59037309 Msa1166880:CDS
GATGTTGAGAAGTATGTGTT+TGG 0.365629 7_4:+59037051 Msa1166880:CDS
ACATTAACTCTCTTCTGTTC+TGG 0.372528 7_4:-59037639 None:intergenic
AATGTAATATTGTAATTTGT+TGG 0.378479 7_4:+59038902 Msa1166880:three_prime_UTR
GGGTTGCATCGATTGTTTCC+TGG 0.382694 7_4:+59037854 Msa1166880:CDS
TGTGACTGTAGGTATATGTT+TGG 0.385749 7_4:+59038643 Msa1166880:intron
GTACAGATTTGTGTTCAATT+GGG 0.390151 7_4:+59036255 Msa1166880:intron
ATATGTTTCAAGAATGCAAT+TGG 0.391625 7_4:+59038732 Msa1166880:CDS
TGTTATTATATTACATTACA+TGG 0.396185 7_4:+59036399 Msa1166880:exon
CATCCATCTGACTATAAGTT+GGG 0.397922 7_4:-59037134 None:intergenic
AGAGGAATTGTTGTATAAAA+GGG 0.403693 7_4:+59036840 Msa1166880:CDS
ATGTAAAGCTTCTTTACATA+AGG 0.410091 7_4:-59037495 None:intergenic
AAGAAGGTGTTTGGCAAGGA+GGG 0.413591 7_4:+59036284 Msa1166880:five_prime_UTR
ATGTTGAGAAGTATGTGTTT+GGG 0.413739 7_4:+59037052 Msa1166880:CDS
TCCTCAACCACACTTCTTCA+AGG 0.413926 7_4:+59035997 Msa1166880:five_prime_UTR
GGGGAAGAAAAGAAGGTGTT+TGG 0.414179 7_4:+59036275 Msa1166880:five_prime_UTR
CCAATTCTTGGAACATCGTT+CGG 0.418893 7_4:-59036497 None:intergenic
ATTGGATCCGTTCGGTGAAA+CGG 0.419867 7_4:+59036515 Msa1166880:CDS
TGTGAAACATGGTTATGATT+TGG 0.419900 7_4:+59038931 Msa1166880:three_prime_UTR
GGAAGAGGAATAATAATAAT+GGG 0.420804 7_4:+59037304 Msa1166880:CDS
CAAGGCTCAATGGTAGCTTT+AGG 0.421216 7_4:+59037283 Msa1166880:CDS
CTCGAATGTTTATTCGTACT+AGG 0.424909 7_4:-59037207 None:intergenic
CAGTGCCATGAAGTTTCATT+TGG 0.426823 7_4:-59038792 None:intergenic
AGCATTCTCTCTCGTATGCT+TGG 0.432651 7_4:+59038960 Msa1166880:three_prime_UTR
ATGAATATGTAACAACTCCT+AGG 0.433427 7_4:+59037442 Msa1166880:CDS
GGTTGAGGAAACGGAGAAGA+AGG 0.435030 7_4:-59035983 None:intergenic
TTCAAGCACTTGAGGCGGAC+AGG 0.436618 7_4:+59037523 Msa1166880:CDS
GTGACTGTAGGTATATGTTT+GGG 0.440852 7_4:+59038644 Msa1166880:intron
ATCGACAACCTTCCTTGTGT+TGG 0.442403 7_4:+59035877 Msa1166880:five_prime_UTR
GAAACGGAAACACCATGAAA+TGG 0.444844 7_4:+59036531 Msa1166880:CDS
TTGATGACCTCTCTTTCTCC+AGG 0.447921 7_4:-59037872 None:intergenic
AAGAAGTGTGGTTGAGGAAA+CGG 0.449525 7_4:-59035992 None:intergenic
GTTATAGAGAAGGTGATAGT+TGG 0.451471 7_4:+59037177 Msa1166880:CDS
AAGCATAGAATGCTGAGTTA+TGG 0.453031 7_4:+59036904 Msa1166880:CDS
GGGTGTATGTTTGGTTTGGA+GGG 0.454478 7_4:-59035959 None:intergenic
CCATCCATCTGACTATAAGT+TGG 0.462484 7_4:-59037135 None:intergenic
TTGAGTCAATGGATTGTGTT+GGG 0.476111 7_4:+59039115 Msa1166880:three_prime_UTR
GGAGAATAGAATATCTCAAA+TGG 0.476799 7_4:+59037104 Msa1166880:CDS
TTGACTGAGTCAGAGGTAGA+AGG 0.478966 7_4:+59036928 Msa1166880:CDS
GAGCACCAAATGAAACTTCA+TGG 0.480696 7_4:+59038787 Msa1166880:three_prime_UTR
CGTTGTTCGCGTTGAAATTG+GGG 0.481816 7_4:+59036588 Msa1166880:CDS
AAATTGAACGGTGGTGGTGA+TGG 0.481967 7_4:+59036565 Msa1166880:CDS
AGTAAGCCAGTGTTGCTAGA+TGG 0.483817 7_4:-59038670 None:intergenic
AAATTCCTCAAACGATCCCT+TGG 0.484142 7_4:-59037081 None:intergenic
GTTGAGGAAACGGAGAAGAA+GGG 0.486510 7_4:-59035982 None:intergenic
GGTGTTTCCGTTTCACCGAA+CGG 0.491247 7_4:-59036522 None:intergenic
CTAGTACGAATAAACATTCG+AGG 0.497895 7_4:+59037208 Msa1166880:CDS
TTCCAAGAATTGGATCCGTT+CGG 0.499595 7_4:+59036507 Msa1166880:CDS
AAAGAAGGTGTTTGGCAAGG+AGG 0.504581 7_4:+59036283 Msa1166880:five_prime_UTR
TGCATTACATTACATTTCAA+AGG 0.506111 7_4:-59036985 None:intergenic
ACCTTGAAGAAGTGTGGTTG+AGG 0.508449 7_4:-59035998 None:intergenic
CAACTTATAGTCAGATGGAT+GGG 0.510170 7_4:+59037136 Msa1166880:CDS
TCTGAATTCAAAAGCGGACC+TGG 0.510414 7_4:+59037411 Msa1166880:CDS
TACATGAGAGGACTGTCTAA+TGG 0.512123 7_4:-59039006 None:intergenic
TTTGTGTTCTGAATTGGAAG+AGG 0.512404 7_4:+59036666 Msa1166880:CDS
GTTAATGTGAGATCCTTTGT+TGG 0.516782 7_4:+59037654 Msa1166880:CDS
TATGTTTCAAGAATGCAATT+GGG 0.520875 7_4:+59038733 Msa1166880:CDS
GTAGATAATTTGTCCGAGGC+TGG 0.522155 7_4:+59037354 Msa1166880:CDS
TTCAATTGGGGAAGAAAAGA+AGG 0.522212 7_4:+59036268 Msa1166880:five_prime_UTR
CTAAAGCTACCATTGAGCCT+TGG 0.523326 7_4:-59037282 None:intergenic
AAACTCCAAGGGATCGTTTG+AGG 0.524729 7_4:+59037076 Msa1166880:CDS
AGATGGATGGGGATTTCAAT+GGG 0.525949 7_4:+59037148 Msa1166880:CDS
CAGATGGATGGGGATTTCAA+TGG 0.526604 7_4:+59037147 Msa1166880:CDS
GAAACACCATGAAATGGAAA+AGG 0.526709 7_4:+59036537 Msa1166880:CDS
TGAGAAGGCTGAGCTTGAGA+TGG 0.528315 7_4:+59036750 Msa1166880:CDS
AATGTGAGATCCTTTGTTGG+CGG 0.533294 7_4:+59037657 Msa1166880:CDS
GTGGGGAAATTGAACGGTGG+TGG 0.533876 7_4:+59036559 Msa1166880:CDS
TTCAAAGGAGGATACTCATA+AGG 0.534931 7_4:-59036970 None:intergenic
GGAATAATAATAATGGGTCA+GGG 0.535516 7_4:+59037310 Msa1166880:CDS
TTGACAAAGGACATCATGTA+AGG 0.537139 7_4:+59038701 Msa1166880:CDS
GTTGAGTCAATGGATTGTGT+TGG 0.540900 7_4:+59039114 Msa1166880:three_prime_UTR
CAATTGGGAGATTAGATCAC+AGG 0.542512 7_4:+59038748 Msa1166880:exon
CGCGACTGCAATTGCGAATG+TGG 0.542602 7_4:+59036469 Msa1166880:CDS
GAATGTGAAGCCGCCAACAA+AGG 0.544205 7_4:-59037667 None:intergenic
GGAGAATCCGACACAAACTC+AGG 0.544748 7_4:-59037261 None:intergenic
TCGGATTCTCCAAGGCTCAA+TGG 0.544952 7_4:+59037273 Msa1166880:CDS
AGCGCTGTTTGTTGAGTCAA+TGG 0.545187 7_4:+59039104 Msa1166880:three_prime_UTR
CATGAGGCTTCAAGCACTTG+AGG 0.547249 7_4:+59037515 Msa1166880:CDS
TGATAATTCAAAACACGTTG+TGG 0.548600 7_4:+59036365 Msa1166880:five_prime_UTR
CCTAGGGAGTTTGGAAATCA+GGG 0.549475 7_4:+59037459 Msa1166880:CDS
TCAATGGTAGCTTTAGGAAG+AGG 0.551484 7_4:+59037289 Msa1166880:CDS
TTGAGGAAACGGAGAAGAAG+GGG 0.551587 7_4:-59035981 None:intergenic
TACAGATTTGTGTTCAATTG+GGG 0.555010 7_4:+59036256 Msa1166880:intron
GGACAGGGAATCAATGAGGC+AGG 0.555216 7_4:+59037539 Msa1166880:CDS
TGAGGAAACGGAGAAGAAGG+GGG 0.555386 7_4:-59035980 None:intergenic
AACCCCAACTTATAGTCAGA+TGG 0.560746 7_4:+59037131 Msa1166880:CDS
ATGTGTTTGGGGAAACTCCA+AGG 0.561976 7_4:+59037064 Msa1166880:CDS
TCAAGCACTTGAGGCGGACA+GGG 0.562181 7_4:+59037524 Msa1166880:CDS
GAGGACGTGTCATGACCAGC+AGG 0.563649 7_4:+59036804 Msa1166880:CDS
AAGGACATCATGTAAGGTCG+TGG 0.564376 7_4:+59038707 Msa1166880:CDS
ATGTGTGGCTTTACGTGAAG+CGG 0.564878 7_4:+59036615 Msa1166880:CDS
CACCATGAAATGGAAAAGGT+GGG 0.566484 7_4:+59036541 Msa1166880:CDS
AGTTTGTGTCGGATTCTCCA+AGG 0.567679 7_4:+59037265 Msa1166880:CDS
ACACCATGAAATGGAAAAGG+TGG 0.568062 7_4:+59036540 Msa1166880:CDS
GTTTGGCCCTGAGTTTGTGT+CGG 0.571530 7_4:+59037254 Msa1166880:CDS
GTTCTGAATTGGAAGAGGAA+AGG 0.572811 7_4:+59036671 Msa1166880:CDS
TCACAGGCTAGGATCATATG+TGG 0.574093 7_4:+59038764 Msa1166880:three_prime_UTR
TGGGAAGAATGTTATAGAGA+AGG 0.574569 7_4:+59037167 Msa1166880:CDS
CGACAACCTTCCTTGTGTTG+GGG 0.576907 7_4:+59035879 Msa1166880:five_prime_UTR
TCTGTGTCTGCCCCAACACA+AGG 0.578135 7_4:-59035889 None:intergenic
ATAAAGAAATAAATCTTCAA+CGG 0.581260 7_4:-59036330 None:intergenic
CTAAAGCTAAAAGCTCCTGC+TGG 0.583273 7_4:-59036819 None:intergenic
TTACATGATGTCCTTTGTCA+AGG 0.584012 7_4:-59038699 None:intergenic
CCAACTTATAGTCAGATGGA+TGG 0.584768 7_4:+59037135 Msa1166880:CDS
GGGCTACCATCTAGCAACAC+TGG 0.588233 7_4:+59038664 Msa1166880:CDS
CCCTGATTTCCAAACTCCCT+AGG 0.591505 7_4:-59037459 None:intergenic
AGAAAAGAAGGTGTTTGGCA+AGG 0.592522 7_4:+59036280 Msa1166880:five_prime_UTR
GAAAAGGTGGGGAAATTGAA+CGG 0.592525 7_4:+59036553 Msa1166880:CDS
CGTCGTATTATCACCAGCCT+CGG 0.595088 7_4:-59037367 None:intergenic
ATTACATTACATTTCAAAGG+AGG 0.595172 7_4:-59036982 None:intergenic
GAGGAAACGGAGAAGAAGGG+GGG 0.597961 7_4:-59035979 None:intergenic
ATCCATCTGACTATAAGTTG+GGG 0.600695 7_4:-59037133 None:intergenic
AAAGGAGGATACTCATAAGG+TGG 0.605904 7_4:-59036967 None:intergenic
TGAATATGTAACAACTCCTA+GGG 0.605927 7_4:+59037443 Msa1166880:CDS
AACTTATAGTCAGATGGATG+GGG 0.607336 7_4:+59037137 Msa1166880:CDS
GAATAATAATAATGGGTCAG+GGG 0.608186 7_4:+59037311 Msa1166880:CDS
CTCAAGAGTGATGCTTTGTG+CGG 0.610587 7_4:+59038857 Msa1166880:three_prime_UTR
AAGGAACGCTGCTTCGTCCG+CGG 0.613406 7_4:+59036690 Msa1166880:CDS
ACCATGAAATGGAAAAGGTG+GGG 0.614402 7_4:+59036542 Msa1166880:CDS
AGAAATACCTTGAAGAAGTG+TGG 0.614816 7_4:-59036004 None:intergenic
ATTGACTCTGAATTCAAAAG+CGG 0.615809 7_4:+59037405 Msa1166880:CDS
TGTTCGCGTTGAAATTGGGG+AGG 0.616199 7_4:+59036591 Msa1166880:CDS
ATTGTTTCCTGGAGAAAGAG+AGG 0.622679 7_4:+59037865 Msa1166880:CDS
GGGAGATTAGATCACAGGCT+AGG 0.623451 7_4:+59038753 Msa1166880:exon
TTATGGCTTGACTGAGTCAG+AGG 0.625650 7_4:+59036921 Msa1166880:CDS
TTACTAATGCTCCTTGACAA+AGG 0.626578 7_4:+59038688 Msa1166880:CDS
TGAAATTGGGGAGGAATGTG+TGG 0.627744 7_4:+59036600 Msa1166880:CDS
ATGTAAAGAAGCTTTACATG+AGG 0.629070 7_4:+59037499 Msa1166880:CDS
ATTGAGATTGCAGACTGAGA+AGG 0.630429 7_4:+59036735 Msa1166880:CDS
TGTTGAGAAGTATGTGTTTG+GGG 0.637549 7_4:+59037053 Msa1166880:CDS
GAAGGTAGATAATTTGTCCG+AGG 0.640933 7_4:+59037350 Msa1166880:CDS
TGTCTGCCCCAACACAAGGA+AGG 0.642123 7_4:-59035885 None:intergenic
TGTGTTTGGGGAAACTCCAA+GGG 0.642552 7_4:+59037065 Msa1166880:CDS
ACATATTCATCAAAAGCACC+AGG 0.644085 7_4:-59037429 None:intergenic
CAGCATGGCATGTACATGAG+AGG 0.649118 7_4:-59039018 None:intergenic
AAGGTGTTTGGCAAGGAGGG+AGG 0.651679 7_4:+59036287 Msa1166880:five_prime_UTR
GAGAATCCGACACAAACTCA+GGG 0.656277 7_4:-59037260 None:intergenic
CACAGGCTAGGATCATATGT+GGG 0.656979 7_4:+59038765 Msa1166880:three_prime_UTR
TAATGTAATGCATGTTTCTG+CGG 0.660930 7_4:+59036996 Msa1166880:CDS
CGACATTGTTTCATTCGCCG+CGG 0.664931 7_4:-59036707 None:intergenic
GTTGGTTGATCTGTGAAACA+TGG 0.665552 7_4:+59038920 Msa1166880:three_prime_UTR
GTATAATGTACGAAGAAGTG+AGG 0.670881 7_4:-59039048 None:intergenic
AAGTGAGGACACTTACAGCA+TGG 0.674154 7_4:-59039033 None:intergenic
AGGCGGACAGGGAATCAATG+AGG 0.683449 7_4:+59037535 Msa1166880:CDS
ACTGAGTCAGAGGTAGAAGG+TGG 0.685416 7_4:+59036931 Msa1166880:CDS
GAGGCTTCAAGCACTTGAGG+CGG 0.691923 7_4:+59037518 Msa1166880:CDS
AAGGTGGGGAAATTGAACGG+TGG 0.706112 7_4:+59036556 Msa1166880:CDS
CGAGGCTGGTGATAATACGA+CGG 0.742352 7_4:+59037368 Msa1166880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATACACAAAAATCT+AGG + chr7_4:59035913-59035932 Msa1166880:five_prime_UTR 15.0%
!! AAAATATACACAAAAATCTA+GGG + chr7_4:59035914-59035933 Msa1166880:five_prime_UTR 15.0%
!! AGGTAAATAATAATATTAAG+AGG - chr7_4:59036053-59036072 None:intergenic 15.0%
!! AAGGATAAAAAAAAAAACAT+AGG - chr7_4:59036087-59036106 None:intergenic 15.0%
!!! CTTATGTAGTTTTATAATTA+AGG - chr7_4:59036106-59036125 None:intergenic 15.0%
!! CTTAATTATAAAACTACATA+AGG + chr7_4:59036104-59036123 Msa1166880:intron 15.0%
!! AATATAACTACAATGAAAAA+TGG - chr7_4:59036168-59036187 None:intergenic 15.0%
!! ATAAAGAAATAAATCTTCAA+CGG - chr7_4:59036333-59036352 None:intergenic 15.0%
!! TGTTATTATATTACATTACA+TGG + chr7_4:59036399-59036418 Msa1166880:exon 15.0%
!! TTTAACATGTATAATATCAT+AGG - chr7_4:59038143-59038162 None:intergenic 15.0%
!!! ACTAATTTTTTAAGAGATTA+TGG - chr7_4:59038201-59038220 None:intergenic 15.0%
!!! TAATGGATAATTAATTTCAA+GGG + chr7_4:59038244-59038263 Msa1166880:intron 15.0%
!!! AATGTAATATTGTAATTTGT+TGG + chr7_4:59038902-59038921 Msa1166880:three_prime_UTR 15.0%
!! TATATTACATTACATGGATT+TGG + chr7_4:59036405-59036424 Msa1166880:exon 20.0%
!! ATTATCTACCTTCTTAAAAT+TGG - chr7_4:59037343-59037362 None:intergenic 20.0%
!!! AAACTATTGTTTTCTTTCAA+TGG - chr7_4:59038030-59038049 None:intergenic 20.0%
!! GAAATTAATTATCCATTACT+TGG - chr7_4:59038242-59038261 None:intergenic 20.0%
!!! GTAATGGATAATTAATTTCA+AGG + chr7_4:59038243-59038262 Msa1166880:intron 20.0%
!! AATGGATAATTAATTTCAAG+GGG + chr7_4:59038245-59038264 Msa1166880:intron 20.0%
!!! AAATCTGTTATTGATTTTAG+TGG + chr7_4:59038272-59038291 Msa1166880:intron 20.0%
! TAAGAGGAGAATGAATAAAA+GGG - chr7_4:59036037-59036056 None:intergenic 25.0%
! TTAAGAGGAGAATGAATAAA+AGG - chr7_4:59036038-59036057 None:intergenic 25.0%
!! AAACATAGGAATTTTTACAG+AGG - chr7_4:59036073-59036092 None:intergenic 25.0%
! CAATGAAAAATGGAAATTGA+GGG - chr7_4:59036158-59036177 None:intergenic 25.0%
! ACAATGAAAAATGGAAATTG+AGG - chr7_4:59036159-59036178 None:intergenic 25.0%
!!! ACAATTTAAACGTTTTGTTG+AGG + chr7_4:59036780-59036799 Msa1166880:CDS 25.0%
! TAGAGGAATTGTTGTATAAA+AGG + chr7_4:59036839-59036858 Msa1166880:CDS 25.0%
! AGAGGAATTGTTGTATAAAA+GGG + chr7_4:59036840-59036859 Msa1166880:CDS 25.0%
! ATTACATTACATTTCAAAGG+AGG - chr7_4:59036985-59037004 None:intergenic 25.0%
! TGCATTACATTACATTTCAA+AGG - chr7_4:59036988-59037007 None:intergenic 25.0%
! AGGAAGAGGAATAATAATAA+TGG + chr7_4:59037303-59037322 Msa1166880:CDS 25.0%
! GGAAGAGGAATAATAATAAT+GGG + chr7_4:59037304-59037323 Msa1166880:CDS 25.0%
! ATGTAAAGCTTCTTTACATA+AGG - chr7_4:59037498-59037517 None:intergenic 25.0%
! TAAGGTAATTTAATTGCAGA+TGG + chr7_4:59037701-59037720 Msa1166880:intron 25.0%
!! TGAAACAGAATAAGTATTGT+TGG - chr7_4:59037815-59037834 None:intergenic 25.0%
!! AGTCTTTGTTTCAAAATGTA+TGG + chr7_4:59037919-59037938 Msa1166880:intron 25.0%
!! TGTTTTCTTTCAATGGTTTA+TGG - chr7_4:59038023-59038042 None:intergenic 25.0%
! ATGATGCATTGAAATTTCAT+AGG - chr7_4:59038120-59038139 None:intergenic 25.0%
! ATGGATAATTAATTTCAAGG+GGG + chr7_4:59038246-59038265 Msa1166880:intron 25.0%
!!! TATTGATTTTAGTGGAGAAA+TGG + chr7_4:59038280-59038299 Msa1166880:intron 25.0%
! ATCTAAGCATATCCTTATAT+TGG + chr7_4:59038386-59038405 Msa1166880:intron 25.0%
! ATAGAAAATGTTTGTTTGAG+AGG - chr7_4:59038412-59038431 None:intergenic 25.0%
! ATATGTTTCAAGAATGCAAT+TGG + chr7_4:59038732-59038751 Msa1166880:CDS 25.0%
! TATGTTTCAAGAATGCAATT+GGG + chr7_4:59038733-59038752 Msa1166880:CDS 25.0%
AGGGAAGAATGATAGTAATT+TGG - chr7_4:59035943-59035962 None:intergenic 30.0%
TGTACAGATTTGTGTTCAAT+TGG + chr7_4:59036254-59036273 Msa1166880:intron 30.0%
GTACAGATTTGTGTTCAATT+GGG + chr7_4:59036255-59036274 Msa1166880:intron 30.0%
TACAGATTTGTGTTCAATTG+GGG + chr7_4:59036256-59036275 Msa1166880:intron 30.0%
TGATAATTCAAAACACGTTG+TGG + chr7_4:59036365-59036384 Msa1166880:five_prime_UTR 30.0%
! TCAAGATTTGTGTTCTGAAT+TGG + chr7_4:59036660-59036679 Msa1166880:CDS 30.0%
! TAATGTAATGCATGTTTCTG+CGG + chr7_4:59036996-59037015 Msa1166880:CDS 30.0%
! ATGTTGAGAAGTATGTGTTT+GGG + chr7_4:59037052-59037071 Msa1166880:CDS 30.0%
GGAGAATAGAATATCTCAAA+TGG + chr7_4:59037104-59037123 Msa1166880:CDS 30.0%
!! AGGAATAATAATAATGGGTC+AGG + chr7_4:59037309-59037328 Msa1166880:CDS 30.0%
!! GGAATAATAATAATGGGTCA+GGG + chr7_4:59037310-59037329 Msa1166880:CDS 30.0%
!! GAATAATAATAATGGGTCAG+GGG + chr7_4:59037311-59037330 Msa1166880:CDS 30.0%
!! GGATTTCTCCAATTTTAAGA+AGG + chr7_4:59037332-59037351 Msa1166880:CDS 30.0%
! ATTGACTCTGAATTCAAAAG+CGG + chr7_4:59037405-59037424 Msa1166880:CDS 30.0%
ATGAATATGTAACAACTCCT+AGG + chr7_4:59037442-59037461 Msa1166880:CDS 30.0%
TGAATATGTAACAACTCCTA+GGG + chr7_4:59037443-59037462 Msa1166880:CDS 30.0%
ATGTAAAGAAGCTTTACATG+AGG + chr7_4:59037499-59037518 Msa1166880:CDS 30.0%
! CACATTCTTCACAGTTTTTA+AGG + chr7_4:59037683-59037702 Msa1166880:CDS 30.0%
! ATCTTTCTTTTGTGTACAGT+GGG + chr7_4:59037834-59037853 Msa1166880:intron 30.0%
!! TTTTACTGATAATGCATACC+AGG + chr7_4:59038064-59038083 Msa1166880:intron 30.0%
CTTAAGAAATATAGATTGCC+TGG - chr7_4:59038085-59038104 None:intergenic 30.0%
CAGGCAATCTATATTTCTTA+AGG + chr7_4:59038083-59038102 Msa1166880:intron 30.0%
! GAAATGGTGATTACTGATTA+AGG + chr7_4:59038296-59038315 Msa1166880:intron 30.0%
TTGTATCTAGCAACTATGAT+AGG + chr7_4:59038451-59038470 Msa1166880:intron 30.0%
! TTTTCCTATAGTGAGTTTAG+AGG + chr7_4:59038535-59038554 Msa1166880:intron 30.0%
TTTCCTATAGTGAGTTTAGA+GGG + chr7_4:59038536-59038555 Msa1166880:intron 30.0%
TCTTGAGAGAAAAATCTAAG+GGG - chr7_4:59038844-59038863 None:intergenic 30.0%
CTCTTGAGAGAAAAATCTAA+GGG - chr7_4:59038845-59038864 None:intergenic 30.0%
ACTCTTGAGAGAAAAATCTA+AGG - chr7_4:59038846-59038865 None:intergenic 30.0%
TGTGAAACATGGTTATGATT+TGG + chr7_4:59038931-59038950 Msa1166880:three_prime_UTR 30.0%
AGAAATACCTTGAAGAAGTG+TGG - chr7_4:59036007-59036026 None:intergenic 35.0%
TTCAATTGGGGAAGAAAAGA+AGG + chr7_4:59036268-59036287 Msa1166880:five_prime_UTR 35.0%
GAAACACCATGAAATGGAAA+AGG + chr7_4:59036537-59036556 Msa1166880:CDS 35.0%
! TTTGTGTTCTGAATTGGAAG+AGG + chr7_4:59036666-59036685 Msa1166880:CDS 35.0%
!! TTAAACGTTTTGTTGAGGAG+AGG + chr7_4:59036785-59036804 Msa1166880:CDS 35.0%
AAGCATAGAATGCTGAGTTA+TGG + chr7_4:59036904-59036923 Msa1166880:CDS 35.0%
TTCAAAGGAGGATACTCATA+AGG - chr7_4:59036973-59036992 None:intergenic 35.0%
! GATGTTGAGAAGTATGTGTT+TGG + chr7_4:59037051-59037070 Msa1166880:CDS 35.0%
! TGTTGAGAAGTATGTGTTTG+GGG + chr7_4:59037053-59037072 Msa1166880:CDS 35.0%
ATCCATCTGACTATAAGTTG+GGG - chr7_4:59037136-59037155 None:intergenic 35.0%
CATCCATCTGACTATAAGTT+GGG - chr7_4:59037137-59037156 None:intergenic 35.0%
CAACTTATAGTCAGATGGAT+GGG + chr7_4:59037136-59037155 Msa1166880:CDS 35.0%
AACTTATAGTCAGATGGATG+GGG + chr7_4:59037137-59037156 Msa1166880:CDS 35.0%
TGGGAAGAATGTTATAGAGA+AGG + chr7_4:59037167-59037186 Msa1166880:CDS 35.0%
GTTATAGAGAAGGTGATAGT+TGG + chr7_4:59037177-59037196 Msa1166880:CDS 35.0%
CTCGAATGTTTATTCGTACT+AGG - chr7_4:59037210-59037229 None:intergenic 35.0%
CTAGTACGAATAAACATTCG+AGG + chr7_4:59037208-59037227 Msa1166880:CDS 35.0%
!! ACATATTCATCAAAAGCACC+AGG - chr7_4:59037432-59037451 None:intergenic 35.0%
CAAAACAAGCTGTGCTTTAT+CGG - chr7_4:59037583-59037602 None:intergenic 35.0%
ACATTAACTCTCTTCTGTTC+TGG - chr7_4:59037642-59037661 None:intergenic 35.0%
GTTAATGTGAGATCCTTTGT+TGG + chr7_4:59037654-59037673 Msa1166880:CDS 35.0%
AATTTAATTGCAGATGGTGC+AGG + chr7_4:59037707-59037726 Msa1166880:intron 35.0%
AATCATCTCAATCGAACCTT+GGG - chr7_4:59037769-59037788 None:intergenic 35.0%
! CATCTTTCTTTTGTGTACAG+TGG + chr7_4:59037833-59037852 Msa1166880:intron 35.0%
CAAATCAAGTAAGTAGTCAG+TGG + chr7_4:59037892-59037911 Msa1166880:intron 35.0%
ACTACTTATCATACTAGGTG+AGG - chr7_4:59037946-59037965 None:intergenic 35.0%
CACCTAGTATGATAAGTAGT+CGG + chr7_4:59037946-59037965 Msa1166880:intron 35.0%
GAATACTGACACAGTTTCTA+TGG + chr7_4:59038328-59038347 Msa1166880:intron 35.0%
! AGTTTCTATGGAATGCCTTT+TGG + chr7_4:59038340-59038359 Msa1166880:intron 35.0%
TTGTTTGAGAGGCCAATATA+AGG - chr7_4:59038401-59038420 None:intergenic 35.0%
AACATATACCTACAGTCACA+AGG - chr7_4:59038643-59038662 None:intergenic 35.0%
TGTGACTGTAGGTATATGTT+TGG + chr7_4:59038643-59038662 Msa1166880:intron 35.0%
GTGACTGTAGGTATATGTTT+GGG + chr7_4:59038644-59038663 Msa1166880:intron 35.0%
TTACTAATGCTCCTTGACAA+AGG + chr7_4:59038688-59038707 Msa1166880:CDS 35.0%
TTACATGATGTCCTTTGTCA+AGG - chr7_4:59038702-59038721 None:intergenic 35.0%
TTGACAAAGGACATCATGTA+AGG + chr7_4:59038701-59038720 Msa1166880:CDS 35.0%
CTTGAGAGAAAAATCTAAGG+GGG - chr7_4:59038843-59038862 None:intergenic 35.0%
GTATAATGTACGAAGAAGTG+AGG - chr7_4:59039051-59039070 None:intergenic 35.0%
!! TTGAGTCAATGGATTGTGTT+GGG + chr7_4:59039115-59039134 Msa1166880:three_prime_UTR 35.0%
! AAGAAGTGTGGTTGAGGAAA+CGG - chr7_4:59035995-59036014 None:intergenic 40.0%
TGTGTGTGAAATGATGCTTC+TGG - chr7_4:59036135-59036154 None:intergenic 40.0%
!! AGAAAAGAAGGTGTTTGGCA+AGG + chr7_4:59036280-59036299 Msa1166880:five_prime_UTR 40.0%
CCAATTCTTGGAACATCGTT+CGG - chr7_4:59036500-59036519 None:intergenic 40.0%
TTCCAAGAATTGGATCCGTT+CGG + chr7_4:59036507-59036526 Msa1166880:CDS 40.0%
GAAACGGAAACACCATGAAA+TGG + chr7_4:59036531-59036550 Msa1166880:CDS 40.0%
ACACCATGAAATGGAAAAGG+TGG + chr7_4:59036540-59036559 Msa1166880:CDS 40.0%
CACCATGAAATGGAAAAGGT+GGG + chr7_4:59036541-59036560 Msa1166880:CDS 40.0%
ACCATGAAATGGAAAAGGTG+GGG + chr7_4:59036542-59036561 Msa1166880:CDS 40.0%
GAAAAGGTGGGGAAATTGAA+CGG + chr7_4:59036553-59036572 Msa1166880:CDS 40.0%
! GTTCTGAATTGGAAGAGGAA+AGG + chr7_4:59036671-59036690 Msa1166880:CDS 40.0%
ATTGAGATTGCAGACTGAGA+AGG + chr7_4:59036735-59036754 Msa1166880:CDS 40.0%
TTCACTTACGTGTGAAGTTC+AGG + chr7_4:59036876-59036895 Msa1166880:CDS 40.0%
AAAGGAGGATACTCATAAGG+TGG - chr7_4:59036970-59036989 None:intergenic 40.0%
AAATTCCTCAAACGATCCCT+TGG - chr7_4:59037084-59037103 None:intergenic 40.0%
AAGGGATCGTTTGAGGAATT+TGG + chr7_4:59037083-59037102 Msa1166880:CDS 40.0%
AACCCCAACTTATAGTCAGA+TGG + chr7_4:59037131-59037150 Msa1166880:CDS 40.0%
CCATCCATCTGACTATAAGT+TGG - chr7_4:59037138-59037157 None:intergenic 40.0%
CCAACTTATAGTCAGATGGA+TGG + chr7_4:59037135-59037154 Msa1166880:CDS 40.0%
AGATGGATGGGGATTTCAAT+GGG + chr7_4:59037148-59037167 Msa1166880:CDS 40.0%
!! TCAATGGTAGCTTTAGGAAG+AGG + chr7_4:59037289-59037308 Msa1166880:CDS 40.0%
! GAAGGTAGATAATTTGTCCG+AGG + chr7_4:59037350-59037369 Msa1166880:CDS 40.0%
AATGTGAGATCCTTTGTTGG+CGG + chr7_4:59037657-59037676 Msa1166880:CDS 40.0%
CAATCATCTCAATCGAACCT+TGG - chr7_4:59037770-59037789 None:intergenic 40.0%
ATTGTTTCCTGGAGAAAGAG+AGG + chr7_4:59037865-59037884 Msa1166880:CDS 40.0%
AGCCGACTACTTATCATACT+AGG - chr7_4:59037951-59037970 None:intergenic 40.0%
TTTGCAGCAATGCCAAGTAA+TGG + chr7_4:59038227-59038246 Msa1166880:intron 40.0%
TACACGTTAGTCAGTCCAAA+AGG - chr7_4:59038358-59038377 None:intergenic 40.0%
GTACCCTCTAAACTCACTAT+AGG - chr7_4:59038542-59038561 None:intergenic 40.0%
!!! GCTTGCTCTCTTTTTTTCAC+AGG - chr7_4:59038582-59038601 None:intergenic 40.0%
CAATTGGGAGATTAGATCAC+AGG + chr7_4:59038748-59038767 Msa1166880:exon 40.0%
GAGCACCAAATGAAACTTCA+TGG + chr7_4:59038787-59038806 Msa1166880:three_prime_UTR 40.0%
CAGTGCCATGAAGTTTCATT+TGG - chr7_4:59038795-59038814 None:intergenic 40.0%
GTTGGTTGATCTGTGAAACA+TGG + chr7_4:59038920-59038939 Msa1166880:three_prime_UTR 40.0%
TACATGAGAGGACTGTCTAA+TGG - chr7_4:59039009-59039028 None:intergenic 40.0%
!! GTTGAGTCAATGGATTGTGT+TGG + chr7_4:59039114-59039133 Msa1166880:three_prime_UTR 40.0%
ATCGACAACCTTCCTTGTGT+TGG + chr7_4:59035877-59035896 Msa1166880:five_prime_UTR 45.0%
TCGACAACCTTCCTTGTGTT+GGG + chr7_4:59035878-59035897 Msa1166880:five_prime_UTR 45.0%
!! GGGTGTATGTTTGGTTTGGA+GGG - chr7_4:59035962-59035981 None:intergenic 45.0%
TTGAGGAAACGGAGAAGAAG+GGG - chr7_4:59035984-59036003 None:intergenic 45.0%
GTTGAGGAAACGGAGAAGAA+GGG - chr7_4:59035985-59036004 None:intergenic 45.0%
TCCTCAACCACACTTCTTCA+AGG + chr7_4:59035997-59036016 Msa1166880:five_prime_UTR 45.0%
! ACCTTGAAGAAGTGTGGTTG+AGG - chr7_4:59036001-59036020 None:intergenic 45.0%
!! GGGGAAGAAAAGAAGGTGTT+TGG + chr7_4:59036275-59036294 Msa1166880:five_prime_UTR 45.0%
!! AAAGAAGGTGTTTGGCAAGG+AGG + chr7_4:59036283-59036302 Msa1166880:five_prime_UTR 45.0%
!! AAGAAGGTGTTTGGCAAGGA+GGG + chr7_4:59036284-59036303 Msa1166880:five_prime_UTR 45.0%
CCGAACGATGTTCCAAGAAT+TGG + chr7_4:59036497-59036516 Msa1166880:CDS 45.0%
! ATTGGATCCGTTCGGTGAAA+CGG + chr7_4:59036515-59036534 Msa1166880:CDS 45.0%
! TCCCCACCTTTTCCATTTCA+TGG - chr7_4:59036546-59036565 None:intergenic 45.0%
! AAATTGAACGGTGGTGGTGA+TGG + chr7_4:59036565-59036584 Msa1166880:CDS 45.0%
GCGTTGTTCGCGTTGAAATT+GGG + chr7_4:59036587-59036606 Msa1166880:CDS 45.0%
CGTTGTTCGCGTTGAAATTG+GGG + chr7_4:59036588-59036607 Msa1166880:CDS 45.0%
TGAAATTGGGGAGGAATGTG+TGG + chr7_4:59036600-59036619 Msa1166880:CDS 45.0%
! ATGTGTGGCTTTACGTGAAG+CGG + chr7_4:59036615-59036634 Msa1166880:CDS 45.0%
CTAAAGCTAAAAGCTCCTGC+TGG - chr7_4:59036822-59036841 None:intergenic 45.0%
!!! GCAGGAGCTTTTAGCTTTAG+AGG + chr7_4:59036822-59036841 Msa1166880:CDS 45.0%
TTATGGCTTGACTGAGTCAG+AGG + chr7_4:59036921-59036940 Msa1166880:CDS 45.0%
TTGACTGAGTCAGAGGTAGA+AGG + chr7_4:59036928-59036947 Msa1166880:CDS 45.0%
ATGTGTTTGGGGAAACTCCA+AGG + chr7_4:59037064-59037083 Msa1166880:CDS 45.0%
TGTGTTTGGGGAAACTCCAA+GGG + chr7_4:59037065-59037084 Msa1166880:CDS 45.0%
AAACTCCAAGGGATCGTTTG+AGG + chr7_4:59037076-59037095 Msa1166880:CDS 45.0%
CAGATGGATGGGGATTTCAA+TGG + chr7_4:59037147-59037166 Msa1166880:CDS 45.0%
GAGAATCCGACACAAACTCA+GGG - chr7_4:59037263-59037282 None:intergenic 45.0%
AGTTTGTGTCGGATTCTCCA+AGG + chr7_4:59037265-59037284 Msa1166880:CDS 45.0%
CTAAAGCTACCATTGAGCCT+TGG - chr7_4:59037285-59037304 None:intergenic 45.0%
CAAGGCTCAATGGTAGCTTT+AGG + chr7_4:59037283-59037302 Msa1166880:CDS 45.0%
! GTAGATAATTTGTCCGAGGC+TGG + chr7_4:59037354-59037373 Msa1166880:CDS 45.0%
TCTGAATTCAAAAGCGGACC+TGG + chr7_4:59037411-59037430 Msa1166880:CDS 45.0%
GTAACAACTCCTAGGGAGTT+TGG + chr7_4:59037450-59037469 Msa1166880:CDS 45.0%
TCCTAGGGAGTTTGGAAATC+AGG + chr7_4:59037458-59037477 Msa1166880:CDS 45.0%
CCTAGGGAGTTTGGAAATCA+GGG + chr7_4:59037459-59037478 Msa1166880:CDS 45.0%
!!! AGCACAGCTTGTTTTGCTCA+AGG + chr7_4:59037587-59037606 Msa1166880:CDS 45.0%
!! TTTGCCCATTTTTCAGCCCA+AGG + chr7_4:59037750-59037769 Msa1166880:intron 45.0%
CGAACCTTGGGCTGAAAAAT+GGG - chr7_4:59037757-59037776 None:intergenic 45.0%
TCGAACCTTGGGCTGAAAAA+TGG - chr7_4:59037758-59037777 None:intergenic 45.0%
! TTGATGACCTCTCTTTCTCC+AGG - chr7_4:59037875-59037894 None:intergenic 45.0%
GGACTGACTAACGTGTACAA+TGG + chr7_4:59038361-59038380 Msa1166880:intron 45.0%
TCTGAACTCCTTGTGACTGT+AGG + chr7_4:59038632-59038651 Msa1166880:intron 45.0%
! AGTAAGCCAGTGTTGCTAGA+TGG - chr7_4:59038673-59038692 None:intergenic 45.0%
AAGGACATCATGTAAGGTCG+TGG + chr7_4:59038707-59038726 Msa1166880:CDS 45.0%
TCACAGGCTAGGATCATATG+TGG + chr7_4:59038764-59038783 Msa1166880:three_prime_UTR 45.0%
CACAGGCTAGGATCATATGT+GGG + chr7_4:59038765-59038784 Msa1166880:three_prime_UTR 45.0%
CTCAAGAGTGATGCTTTGTG+CGG + chr7_4:59038857-59038876 Msa1166880:three_prime_UTR 45.0%
AGCATTCTCTCTCGTATGCT+TGG + chr7_4:59038960-59038979 Msa1166880:three_prime_UTR 45.0%
AAGTGAGGACACTTACAGCA+TGG - chr7_4:59039036-59039055 None:intergenic 45.0%
AAACAGCGCTGCAACTTTCT+AGG - chr7_4:59039094-59039113 None:intergenic 45.0%
! AGCGCTGTTTGTTGAGTCAA+TGG + chr7_4:59039104-59039123 Msa1166880:three_prime_UTR 45.0%
CGACAACCTTCCTTGTGTTG+GGG + chr7_4:59035879-59035898 Msa1166880:five_prime_UTR 50.0%
!! GGGGTGTATGTTTGGTTTGG+AGG - chr7_4:59035963-59035982 None:intergenic 50.0%
! AGGGGGGTGTATGTTTGGTT+TGG - chr7_4:59035966-59035985 None:intergenic 50.0%
! GAAGAAGGGGGGTGTATGTT+TGG - chr7_4:59035971-59035990 None:intergenic 50.0%
TGAGGAAACGGAGAAGAAGG+GGG - chr7_4:59035983-59036002 None:intergenic 50.0%
GGTTGAGGAAACGGAGAAGA+AGG - chr7_4:59035986-59036005 None:intergenic 50.0%
CACCGAACGGATCCAATTCT+TGG - chr7_4:59036512-59036531 None:intergenic 50.0%
GGTGTTTCCGTTTCACCGAA+CGG - chr7_4:59036525-59036544 None:intergenic 50.0%
AAGGTGGGGAAATTGAACGG+TGG + chr7_4:59036556-59036575 Msa1166880:CDS 50.0%
GGCGTTGTTCGCGTTGAAAT+TGG + chr7_4:59036586-59036605 Msa1166880:CDS 50.0%
TGTTCGCGTTGAAATTGGGG+AGG + chr7_4:59036591-59036610 Msa1166880:CDS 50.0%
CGACATTGTTTCATTCGCCG+CGG - chr7_4:59036710-59036729 None:intergenic 50.0%
TGAGAAGGCTGAGCTTGAGA+TGG + chr7_4:59036750-59036769 Msa1166880:CDS 50.0%
ACTGAGTCAGAGGTAGAAGG+TGG + chr7_4:59036931-59036950 Msa1166880:CDS 50.0%
TCATGTGACTCGTCGTCGTT+TGG + chr7_4:59037237-59037256 Msa1166880:CDS 50.0%
GTTTGGCCCTGAGTTTGTGT+CGG + chr7_4:59037254-59037273 Msa1166880:CDS 50.0%
GGAGAATCCGACACAAACTC+AGG - chr7_4:59037264-59037283 None:intergenic 50.0%
TCGGATTCTCCAAGGCTCAA+TGG + chr7_4:59037273-59037292 Msa1166880:CDS 50.0%
CGTCGTATTATCACCAGCCT+CGG - chr7_4:59037370-59037389 None:intergenic 50.0%
CGAGGCTGGTGATAATACGA+CGG + chr7_4:59037368-59037387 Msa1166880:CDS 50.0%
CCCTGATTTCCAAACTCCCT+AGG - chr7_4:59037462-59037481 None:intergenic 50.0%
CATGAGGCTTCAAGCACTTG+AGG + chr7_4:59037515-59037534 Msa1166880:CDS 50.0%
GAATGTGAAGCCGCCAACAA+AGG - chr7_4:59037670-59037689 None:intergenic 50.0%
!! GGGTTGCATCGATTGTTTCC+TGG + chr7_4:59037854-59037873 Msa1166880:CDS 50.0%
GGGAGATTAGATCACAGGCT+AGG + chr7_4:59038753-59038772 Msa1166880:exon 50.0%
CAGCATGGCATGTACATGAG+AGG - chr7_4:59039021-59039040 None:intergenic 50.0%
TGTCTGCCCCAACACAAGGA+AGG - chr7_4:59035888-59035907 None:intergenic 55.0%
TCTGTGTCTGCCCCAACACA+AGG - chr7_4:59035892-59035911 None:intergenic 55.0%
GAGGAAACGGAGAAGAAGGG+GGG - chr7_4:59035982-59036001 None:intergenic 55.0%
! AAGGTGTTTGGCAAGGAGGG+AGG + chr7_4:59036287-59036306 Msa1166880:five_prime_UTR 55.0%
CGCGACTGCAATTGCGAATG+TGG + chr7_4:59036469-59036488 Msa1166880:CDS 55.0%
GTGGGGAAATTGAACGGTGG+TGG + chr7_4:59036559-59036578 Msa1166880:CDS 55.0%
GAGGCTTCAAGCACTTGAGG+CGG + chr7_4:59037518-59037537 Msa1166880:CDS 55.0%
TTCAAGCACTTGAGGCGGAC+AGG + chr7_4:59037523-59037542 Msa1166880:CDS 55.0%
TCAAGCACTTGAGGCGGACA+GGG + chr7_4:59037524-59037543 Msa1166880:CDS 55.0%
AGGCGGACAGGGAATCAATG+AGG + chr7_4:59037535-59037554 Msa1166880:CDS 55.0%
GGACAGGGAATCAATGAGGC+AGG + chr7_4:59037539-59037558 Msa1166880:CDS 55.0%
GGGCTACCATCTAGCAACAC+TGG + chr7_4:59038664-59038683 Msa1166880:CDS 55.0%
AAGGAACGCTGCTTCGTCCG+CGG + chr7_4:59036690-59036709 Msa1166880:CDS 60.0%
GAGGACGTGTCATGACCAGC+AGG + chr7_4:59036804-59036823 Msa1166880:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 59035841 59039142 59035841 ID=Msa1166880;Name=Msa1166880
chr7_4 mRNA 59035841 59039142 59035841 ID=Msa1166880-mRNA-1;Parent=Msa1166880;Name=Msa1166880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=335|1|1|1|0.66|0.5|4|380|480
chr7_4 exon 59035841 59036018 59035841 ID=Msa1166880-mRNA-1:exon:18238;Parent=Msa1166880-mRNA-1
chr7_4 exon 59036261 59037704 59036261 ID=Msa1166880-mRNA-1:exon:18239;Parent=Msa1166880-mRNA-1
chr7_4 exon 59037853 59037899 59037853 ID=Msa1166880-mRNA-1:exon:18240;Parent=Msa1166880-mRNA-1
chr7_4 exon 59038654 59039142 59038654 ID=Msa1166880-mRNA-1:exon:18241;Parent=Msa1166880-mRNA-1
chr7_4 five_prime_UTR 59035841 59036018 59035841 ID=Msa1166880-mRNA-1:five_prime_utr;Parent=Msa1166880-mRNA-1
chr7_4 five_prime_UTR 59036261 59036417 59036261 ID=Msa1166880-mRNA-1:five_prime_utr;Parent=Msa1166880-mRNA-1
chr7_4 CDS 59036418 59037704 59036418 ID=Msa1166880-mRNA-1:cds;Parent=Msa1166880-mRNA-1
chr7_4 CDS 59037853 59037899 59037853 ID=Msa1166880-mRNA-1:cds;Parent=Msa1166880-mRNA-1
chr7_4 CDS 59038654 59038762 59038654 ID=Msa1166880-mRNA-1:cds;Parent=Msa1166880-mRNA-1
chr7_4 three_prime_UTR 59038763 59039142 59038763 ID=Msa1166880-mRNA-1:three_prime_utr;Parent=Msa1166880-mRNA-1
Gene Sequence

>Msa1166880

ATGGATTTGGATTCTTCTGATGATTCTATAAATACAAAAATTTGCAAATGTCGCGACTGCAATTGCGAATGTGGTTGTTCCGAACGATGTTCCAAGAATTGGATCCGTTCGGTGAAACGGAAACACCATGAAATGGAAAAGGTGGGGAAATTGAACGGTGGTGGTGATGGCGTTGTTCGCGTTGAAATTGGGGAGGAATGTGTGGCTTTACGTGAAGCGGTTAGTAGTCAACAGAAAGCGATTCAAGATTTGTGTTCTGAATTGGAAGAGGAAAGGAACGCTGCTTCGTCCGCGGCGAATGAAACAATGTCGATGATATTGAGATTGCAGACTGAGAAGGCTGAGCTTGAGATGGAAGCGCGACAATTTAAACGTTTTGTTGAGGAGAGGACGTGTCATGACCAGCAGGAGCTTTTAGCTTTAGAGGAATTGTTGTATAAAAGGGAACAAGTGATACATTCACTTACGTGTGAAGTTCAGGCTTATAAGCATAGAATGCTGAGTTATGGCTTGACTGAGTCAGAGGTAGAAGGTGGTGATTATGAATTTCCACCTTATGAGTATCCTCCTTTGAAATGTAATGTAATGCATGTTTCTGCGGATGCTGATGATGATGATGATGTTTTTGATGTTGATGTTGAGAAGTATGTGTTTGGGGAAACTCCAAGGGATCGTTTGAGGAATTTGGAGAATAGAATATCTCAAATGGAGAAAACCCCAACTTATAGTCAGATGGATGGGGATTTCAATGGGAAGAATGTTATAGAGAAGGTGATAGTTGGACATTCTCCTAGTACGAATAAACATTCGAGGAAATTTTCATGTGACTCGTCGTCGTTTGGCCCTGAGTTTGTGTCGGATTCTCCAAGGCTCAATGGTAGCTTTAGGAAGAGGAATAATAATAATGGGTCAGGGGATTTCTCCAATTTTAAGAAGGTAGATAATTTGTCCGAGGCTGGTGATAATACGACGGACAGAGTTTACACTATTGACTCTGAATTCAAAAGCGGACCTGGTGCTTTTGATGAATATGTAACAACTCCTAGGGAGTTTGGAAATCAGGGTGATTTTGAAGATCCTTATGTAAAGAAGCTTTACATGAGGCTTCAAGCACTTGAGGCGGACAGGGAATCAATGAGGCAGGCAATCATTTCGATGCGTACCGATAAAGCACAGCTTGTTTTGCTCAAGGAAATAGCTCAACATTTGTGCAAAGAGATGCCAGAACAGAAGAGAGTTAATGTGAGATCCTTTGTTGGCGGCTTCACATTCTTCACAGTTTTTAAGTGGGTTGCATCGATTGTTTCCTGGAGAAAGAGAGGTCATCAAATCAAGTATATGTTTGGGCTACCATCTAGCAACACTGGCTTACTAATGCTCCTTGACAAAGGACATCATGTAAGGTCGTGGAGATATGTTTCAAGAATGCAATTGGGAGATTAG
Protein sequence

>Msa1166880

MDLDSSDDSINTKICKCRDCNCECGCSERCSKNWIRSVKRKHHEMEKVGKLNGGGDGVVRVEIGEECVALREAVSSQQKAIQDLCSELEEERNAASSAANETMSMILRLQTEKAELEMEARQFKRFVEERTCHDQQELLALEELLYKREQVIHSLTCEVQAYKHRMLSYGLTESEVEGGDYEFPPYEYPPLKCNVMHVSADADDDDDVFDVDVEKYVFGETPRDRLRNLENRISQMEKTPTYSQMDGDFNGKNVIEKVIVGHSPSTNKHSRKFSCDSSSFGPEFVSDSPRLNGSFRKRNNNNGSGDFSNFKKVDNLSEAGDNTTDRVYTIDSEFKSGPGAFDEYVTTPREFGNQGDFEDPYVKKLYMRLQALEADRESMRQAIISMRTDKAQLVLLKEIAQHLCKEMPEQKRVNVRSFVGGFTFFTVFKWVASIVSWRKRGHQIKYMFGLPSSNTGLLMLLDKGHHVRSWRYVSRMQLGD*