Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126500 | XP_013450273.1 | 98.129 | 481 | 8 | 1 | 1 | 480 | 1 | 481 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126500 | sp|Q9FG14|MYOB7_ARATH | 48.527 | 509 | 215 | 12 | 14 | 478 | 13 | 518 | 1.63e-146 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126500 | A0A072U4M5 | 98.129 | 481 | 8 | 1 | 1 | 480 | 1 | 481 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0119900 | Msa1126500 | 0.827394 | 1.603293e-54 | -8.615850e-47 |
| Msa0690310 | Msa1126500 | 0.812124 | 4.964510e-51 | -8.615850e-47 |
| Msa0752700 | Msa1126500 | 0.836158 | 1.102347e-56 | -8.615850e-47 |
| Msa0794970 | Msa1126500 | 0.828330 | 9.546111e-55 | -8.615850e-47 |
| Msa0831100 | Msa1126500 | 0.838625 | 2.572568e-57 | -8.615850e-47 |
| Msa0833190 | Msa1126500 | -0.803675 | 3.113206e-49 | -8.615850e-47 |
| Msa0131590 | Msa1126500 | 0.808347 | 3.237948e-50 | -8.615850e-47 |
| Msa0172980 | Msa1126500 | 0.800936 | 1.140518e-48 | -8.615850e-47 |
| Msa0173800 | Msa1126500 | 0.803954 | 2.724386e-49 | -8.615850e-47 |
| Msa0385500 | Msa1126500 | 0.813106 | 3.026961e-51 | -8.615850e-47 |
| Msa0419720 | Msa1126500 | 0.801776 | 7.674857e-49 | -8.615850e-47 |
| Msa0434570 | Msa1126500 | 0.809605 | 1.742205e-50 | -8.615850e-47 |
| Msa0434770 | Msa1126500 | 0.807902 | 4.029225e-50 | -8.615850e-47 |
| Msa0450930 | Msa1126500 | 0.815927 | 7.193892e-52 | -8.615850e-47 |
| Msa1002960 | Msa1126500 | 0.800709 | 1.268777e-48 | -8.615850e-47 |
| Msa0257490 | Msa1126500 | 0.814603 | 1.416298e-51 | -8.615850e-47 |
| Msa0281530 | Msa1126500 | 0.824237 | 9.000670e-54 | -8.615850e-47 |
| Msa0296790 | Msa1126500 | 0.804271 | 2.340825e-49 | -8.615850e-47 |
| Msa0320590 | Msa1126500 | 0.854645 | 1.072214e-61 | -8.615850e-47 |
| Msa0321690 | Msa1126500 | 0.801492 | 8.779202e-49 | -8.615850e-47 |
| Msa1126500 | Msa1165270 | 0.802801 | 4.720741e-49 | -8.615850e-47 |
| Msa1126500 | Msa1165780 | 0.808634 | 2.812659e-50 | -8.615850e-47 |
| Msa1126500 | Msa1166880 | 0.909169 | 7.665427e-82 | -8.615850e-47 |
| Msa1126500 | Msa1351540 | 0.824058 | 9.916541e-54 | -8.615850e-47 |
| Msa1126500 | Msa1411950 | 0.803719 | 3.048308e-49 | -8.615850e-47 |
| Msa1126500 | Msa1450720 | 0.811989 | 5.313624e-51 | -8.615850e-47 |
| Msa1126500 | Msa1457220 | 0.826460 | 2.680436e-54 | -8.615850e-47 |
| Msa0491000 | Msa1126500 | 0.805181 | 1.511407e-49 | -8.615850e-47 |
| Msa0958000 | Msa1126500 | 0.811001 | 8.708023e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126500 | MtrunA17_Chr7g0268041 | 98.129 | 481 | 8 | 1 | 1 | 480 | 1 | 481 | 0.0 | 979 |
| Msa1126500 | MtrunA17_Chr1g0176391 | 61.031 | 485 | 161 | 9 | 14 | 480 | 12 | 486 | 0.0 | 570 |
| Msa1126500 | MtrunA17_Chr2g0307041 | 50.000 | 104 | 52 | 0 | 67 | 170 | 16 | 119 | 1.72e-22 | 99.0 |
| Msa1126500 | MtrunA17_Chr4g0073651 | 42.857 | 119 | 65 | 1 | 66 | 184 | 5 | 120 | 1.44e-19 | 91.3 |
| Msa1126500 | MtrunA17_Chr1g0184441 | 45.545 | 101 | 54 | 1 | 64 | 163 | 526 | 626 | 2.11e-16 | 82.4 |
| Msa1126500 | MtrunA17_Chr8g0376151 | 43.269 | 104 | 59 | 0 | 70 | 173 | 600 | 703 | 2.67e-14 | 75.9 |
| Msa1126500 | MtrunA17_Chr5g0434681 | 44.737 | 76 | 42 | 0 | 70 | 145 | 620 | 695 | 1.08e-12 | 70.5 |
| Msa1126500 | MtrunA17_Chr3g0093241 | 33.714 | 175 | 92 | 6 | 70 | 243 | 334 | 485 | 1.52e-11 | 66.6 |
| Msa1126500 | MtrunA17_Chr4g0049631 | 32.692 | 104 | 70 | 0 | 66 | 169 | 299 | 402 | 6.21e-11 | 64.3 |
| Msa1126500 | MtrunA17_Chr4g0003901 | 41.237 | 97 | 57 | 0 | 70 | 166 | 289 | 385 | 9.44e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126500 | AT5G06560.1 | 48.527 | 509 | 215 | 12 | 14 | 478 | 13 | 518 | 1.66e-147 | 432 |
| Msa1126500 | AT3G11850.2 | 43.030 | 495 | 222 | 12 | 33 | 478 | 21 | 504 | 1.51e-119 | 360 |
| Msa1126500 | AT3G11850.1 | 43.030 | 495 | 222 | 12 | 33 | 478 | 21 | 504 | 1.51e-119 | 360 |
| Msa1126500 | AT3G54740.3 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1126500 | AT3G54740.6 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1126500 | AT3G54740.2 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1126500 | AT3G54740.5 | 39.413 | 477 | 201 | 14 | 22 | 471 | 16 | 431 | 4.21e-89 | 279 |
| Msa1126500 | AT3G54740.8 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.30e-88 | 275 |
| Msa1126500 | AT3G54740.1 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.30e-88 | 275 |
| Msa1126500 | AT3G54740.7 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.30e-88 | 275 |
| Msa1126500 | AT3G54740.4 | 40.233 | 430 | 179 | 10 | 59 | 471 | 15 | 383 | 3.30e-88 | 275 |
| Msa1126500 | AT5G16720.1 | 43.966 | 116 | 59 | 1 | 54 | 169 | 350 | 459 | 1.58e-20 | 95.5 |
| Msa1126500 | AT4G30830.1 | 44.444 | 108 | 60 | 0 | 64 | 171 | 12 | 119 | 1.33e-19 | 90.5 |
| Msa1126500 | AT4G30830.2 | 44.444 | 108 | 60 | 0 | 64 | 171 | 12 | 119 | 1.33e-19 | 90.5 |
| Msa1126500 | AT5G57830.1 | 44.697 | 132 | 65 | 1 | 45 | 176 | 2 | 125 | 6.22e-19 | 89.0 |
| Msa1126500 | AT2G24140.2 | 44.340 | 106 | 59 | 0 | 65 | 170 | 14 | 119 | 1.69e-17 | 84.0 |
| Msa1126500 | AT2G24140.3 | 44.340 | 106 | 59 | 0 | 65 | 170 | 14 | 119 | 1.69e-17 | 84.0 |
| Msa1126500 | AT1G70750.1 | 44.000 | 100 | 56 | 0 | 70 | 169 | 416 | 515 | 2.52e-15 | 79.3 |
| Msa1126500 | AT4G13630.2 | 42.308 | 130 | 71 | 3 | 40 | 167 | 195 | 322 | 7.60e-15 | 77.4 |
| Msa1126500 | AT4G13630.1 | 42.308 | 130 | 71 | 3 | 40 | 167 | 195 | 322 | 7.60e-15 | 77.4 |
| Msa1126500 | AT2G30690.1 | 41.584 | 101 | 58 | 1 | 64 | 163 | 609 | 709 | 3.07e-14 | 75.9 |
| Msa1126500 | AT2G30690.2 | 41.584 | 101 | 58 | 1 | 64 | 163 | 609 | 709 | 3.07e-14 | 75.9 |
| Msa1126500 | AT1G04890.1 | 49.474 | 95 | 48 | 0 | 70 | 164 | 114 | 208 | 1.70e-13 | 72.8 |
| Msa1126500 | AT1G08800.2 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.18e-13 | 73.6 |
| Msa1126500 | AT1G08800.4 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.18e-13 | 73.6 |
| Msa1126500 | AT1G08800.3 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.18e-13 | 73.6 |
| Msa1126500 | AT1G08800.1 | 37.391 | 115 | 72 | 0 | 49 | 163 | 872 | 986 | 2.18e-13 | 73.6 |
| Msa1126500 | AT4G13160.1 | 44.660 | 103 | 57 | 0 | 62 | 164 | 109 | 211 | 6.23e-13 | 69.7 |
| Msa1126500 | AT1G74830.1 | 42.056 | 107 | 58 | 2 | 70 | 175 | 305 | 408 | 7.10e-13 | 71.2 |
| Msa1126500 | AT2G24140.4 | 48.571 | 70 | 36 | 0 | 103 | 172 | 1 | 70 | 1.04e-11 | 65.9 |
| Msa1126500 | AT2G24140.1 | 48.571 | 70 | 36 | 0 | 103 | 172 | 1 | 70 | 1.04e-11 | 65.9 |
| Msa1126500 | AT1G18990.1 | 34.337 | 166 | 96 | 4 | 27 | 191 | 268 | 421 | 3.31e-11 | 65.9 |
Find 168 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCGTTTGAGGAATT+TGG | 0.149872 | 7_3:-78063011 | Msa1126500:CDS |
| ATTATCTACCTTCTTAAAAT+TGG | 0.151355 | 7_3:+78062754 | None:intergenic |
| TAGAGGAATTGTTGTATAAA+AGG | 0.183383 | 7_3:-78063255 | Msa1126500:CDS |
| AAACAGCGCTGCAACTTTCT+AGG | 0.214289 | 7_3:+78061003 | None:intergenic |
| CACCGAACGGATCCAATTCT+TGG | 0.235610 | 7_3:+78063585 | None:intergenic |
| AGGGAAGAATGATAGTAATT+TGG | 0.251764 | 7_3:+78064155 | None:intergenic |
| TATATTACATTACATGGATT+TGG | 0.256423 | 7_3:-78063689 | Msa1126500:exon |
| GGCGTTGTTCGCGTTGAAAT+TGG | 0.298444 | 7_3:-78063508 | Msa1126500:CDS |
| CCGAACGATGTTCCAAGAAT+TGG | 0.298688 | 7_3:-78063597 | Msa1126500:CDS |
| CAAAACAAGCTGTGCTTTAT+CGG | 0.300589 | 7_3:+78062514 | None:intergenic |
| GTAACAACTCCTAGGGAGTT+TGG | 0.317502 | 7_3:-78062644 | Msa1126500:CDS |
| GCGTTGTTCGCGTTGAAATT+GGG | 0.320768 | 7_3:-78063507 | Msa1126500:CDS |
| TCAAGATTTGTGTTCTGAAT+TGG | 0.320822 | 7_3:-78063434 | Msa1126500:CDS |
| TGTACAGATTTGTGTTCAAT+TGG | 0.324763 | 7_3:-78063840 | Msa1126500:intron |
| TCCTAGGGAGTTTGGAAATC+AGG | 0.328062 | 7_3:-78062636 | Msa1126500:CDS |
| AGGAAGAGGAATAATAATAA+TGG | 0.334301 | 7_3:-78062791 | Msa1126500:CDS |
| GGGGTGTATGTTTGGTTTGG+AGG | 0.337233 | 7_3:+78064135 | None:intergenic |
| TTCACTTACGTGTGAAGTTC+AGG | 0.346138 | 7_3:-78063218 | Msa1126500:CDS |
| TCATGTGACTCGTCGTCGTT+TGG | 0.362096 | 7_3:-78062857 | Msa1126500:CDS |
| TCGACAACCTTCCTTGTGTT+GGG | 0.362381 | 7_3:-78064217 | Msa1126500:five_prime_UTR |
| AGGAATAATAATAATGGGTC+AGG | 0.364109 | 7_3:-78062785 | Msa1126500:CDS |
| GATGTTGAGAAGTATGTGTT+TGG | 0.365629 | 7_3:-78063043 | Msa1126500:CDS |
| ACATTAACTCTCTTCTGTTC+TGG | 0.372528 | 7_3:+78062455 | None:intergenic |
| AATGTAATATTGTAATTTGT+TGG | 0.378479 | 7_3:-78061192 | Msa1126500:three_prime_UTR |
| GGGTTGCATCGATTGTTTCC+TGG | 0.382694 | 7_3:-78062240 | Msa1126500:CDS |
| TGTGACTGTAGGTATATGTT+TGG | 0.385749 | 7_3:-78061451 | Msa1126500:intron |
| GTACAGATTTGTGTTCAATT+GGG | 0.390151 | 7_3:-78063839 | Msa1126500:intron |
| ATATGTTTCAAGAATGCAAT+TGG | 0.391625 | 7_3:-78061362 | Msa1126500:CDS |
| TGTTATTATATTACATTACA+TGG | 0.396185 | 7_3:-78063695 | Msa1126500:exon |
| CATCCATCTGACTATAAGTT+GGG | 0.397922 | 7_3:+78062960 | None:intergenic |
| AGAGGAATTGTTGTATAAAA+GGG | 0.403693 | 7_3:-78063254 | Msa1126500:CDS |
| ATGTAAAGCTTCTTTACATA+AGG | 0.410091 | 7_3:+78062599 | None:intergenic |
| AAGAAGGTGTTTGGCAAGGA+GGG | 0.413591 | 7_3:-78063810 | Msa1126500:five_prime_UTR |
| ATGTTGAGAAGTATGTGTTT+GGG | 0.413739 | 7_3:-78063042 | Msa1126500:CDS |
| TCCTCAACCACACTTCTTCA+AGG | 0.413926 | 7_3:-78064098 | Msa1126500:intron |
| GGGGAAGAAAAGAAGGTGTT+TGG | 0.414179 | 7_3:-78063819 | Msa1126500:five_prime_UTR |
| CCAATTCTTGGAACATCGTT+CGG | 0.418893 | 7_3:+78063597 | None:intergenic |
| ATTGGATCCGTTCGGTGAAA+CGG | 0.419867 | 7_3:-78063579 | Msa1126500:CDS |
| TGTGAAACATGGTTATGATT+TGG | 0.419900 | 7_3:-78061163 | Msa1126500:three_prime_UTR |
| GGAAGAGGAATAATAATAAT+GGG | 0.420804 | 7_3:-78062790 | Msa1126500:CDS |
| CAAGGCTCAATGGTAGCTTT+AGG | 0.421216 | 7_3:-78062811 | Msa1126500:CDS |
| CTCGAATGTTTATTCGTACT+AGG | 0.424909 | 7_3:+78062887 | None:intergenic |
| CAGTGCCATGAAGTTTCATT+TGG | 0.426823 | 7_3:+78061302 | None:intergenic |
| AGCATTCTCTCTCGTATGCT+TGG | 0.432651 | 7_3:-78061134 | Msa1126500:three_prime_UTR |
| ATGAATATGTAACAACTCCT+AGG | 0.433427 | 7_3:-78062652 | Msa1126500:CDS |
| GGTTGAGGAAACGGAGAAGA+AGG | 0.435030 | 7_3:+78064112 | None:intergenic |
| TTCAAGCACTTGAGGCGGAC+AGG | 0.436618 | 7_3:-78062571 | Msa1126500:CDS |
| GTGACTGTAGGTATATGTTT+GGG | 0.440852 | 7_3:-78061450 | Msa1126500:intron |
| ATCGACAACCTTCCTTGTGT+TGG | 0.442403 | 7_3:-78064218 | Msa1126500:five_prime_UTR |
| GAAACGGAAACACCATGAAA+TGG | 0.444844 | 7_3:-78063563 | Msa1126500:CDS |
| TTGATGACCTCTCTTTCTCC+AGG | 0.447921 | 7_3:+78062222 | None:intergenic |
| AAGAAGTGTGGTTGAGGAAA+CGG | 0.449525 | 7_3:+78064103 | None:intergenic |
| GTTATAGAGAAGGTGATAGT+TGG | 0.451471 | 7_3:-78062917 | Msa1126500:CDS |
| AAGCATAGAATGCTGAGTTA+TGG | 0.453031 | 7_3:-78063190 | Msa1126500:CDS |
| GGGTGTATGTTTGGTTTGGA+GGG | 0.454478 | 7_3:+78064136 | None:intergenic |
| CCATCCATCTGACTATAAGT+TGG | 0.462484 | 7_3:+78062959 | None:intergenic |
| TTGAGTCAATGGATTGTGTT+GGG | 0.476111 | 7_3:-78060979 | Msa1126500:three_prime_UTR |
| GGAGAATAGAATATCTCAAA+TGG | 0.476799 | 7_3:-78062990 | Msa1126500:CDS |
| TTGACTGAGTCAGAGGTAGA+AGG | 0.478966 | 7_3:-78063166 | Msa1126500:CDS |
| GAGCACCAAATGAAACTTCA+TGG | 0.480696 | 7_3:-78061307 | Msa1126500:three_prime_UTR |
| CGTTGTTCGCGTTGAAATTG+GGG | 0.481816 | 7_3:-78063506 | Msa1126500:CDS |
| AAATTGAACGGTGGTGGTGA+TGG | 0.481967 | 7_3:-78063529 | Msa1126500:CDS |
| AGTAAGCCAGTGTTGCTAGA+TGG | 0.483817 | 7_3:+78061424 | None:intergenic |
| AAATTCCTCAAACGATCCCT+TGG | 0.484142 | 7_3:+78063013 | None:intergenic |
| GTTGAGGAAACGGAGAAGAA+GGG | 0.486510 | 7_3:+78064113 | None:intergenic |
| GGTGTTTCCGTTTCACCGAA+CGG | 0.491247 | 7_3:+78063572 | None:intergenic |
| CTAGTACGAATAAACATTCG+AGG | 0.497895 | 7_3:-78062886 | Msa1126500:CDS |
| TTCCAAGAATTGGATCCGTT+CGG | 0.499595 | 7_3:-78063587 | Msa1126500:CDS |
| AAAGAAGGTGTTTGGCAAGG+AGG | 0.504581 | 7_3:-78063811 | Msa1126500:five_prime_UTR |
| TGCATTACATTACATTTCAA+AGG | 0.506111 | 7_3:+78063109 | None:intergenic |
| ACCTTGAAGAAGTGTGGTTG+AGG | 0.508449 | 7_3:+78064097 | None:intergenic |
| CAACTTATAGTCAGATGGAT+GGG | 0.510170 | 7_3:-78062958 | Msa1126500:CDS |
| TCTGAATTCAAAAGCGGACC+TGG | 0.510414 | 7_3:-78062683 | Msa1126500:CDS |
| TACATGAGAGGACTGTCTAA+TGG | 0.512123 | 7_3:+78061088 | None:intergenic |
| TTTGTGTTCTGAATTGGAAG+AGG | 0.512404 | 7_3:-78063428 | Msa1126500:CDS |
| GTTAATGTGAGATCCTTTGT+TGG | 0.516782 | 7_3:-78062440 | Msa1126500:CDS |
| TATGTTTCAAGAATGCAATT+GGG | 0.520875 | 7_3:-78061361 | Msa1126500:CDS |
| GTAGATAATTTGTCCGAGGC+TGG | 0.522155 | 7_3:-78062740 | Msa1126500:CDS |
| TTCAATTGGGGAAGAAAAGA+AGG | 0.522212 | 7_3:-78063826 | Msa1126500:five_prime_UTR |
| CTAAAGCTACCATTGAGCCT+TGG | 0.523326 | 7_3:+78062812 | None:intergenic |
| AAACTCCAAGGGATCGTTTG+AGG | 0.524729 | 7_3:-78063018 | Msa1126500:CDS |
| AGATGGATGGGGATTTCAAT+GGG | 0.525949 | 7_3:-78062946 | Msa1126500:CDS |
| CAGATGGATGGGGATTTCAA+TGG | 0.526604 | 7_3:-78062947 | Msa1126500:CDS |
| GAAACACCATGAAATGGAAA+AGG | 0.526709 | 7_3:-78063557 | Msa1126500:CDS |
| TGAGAAGGCTGAGCTTGAGA+TGG | 0.528315 | 7_3:-78063344 | Msa1126500:CDS |
| AATGTGAGATCCTTTGTTGG+CGG | 0.533294 | 7_3:-78062437 | Msa1126500:CDS |
| GTGGGGAAATTGAACGGTGG+TGG | 0.533876 | 7_3:-78063535 | Msa1126500:CDS |
| TTCAAAGGAGGATACTCATA+AGG | 0.534931 | 7_3:+78063124 | None:intergenic |
| GGAATAATAATAATGGGTCA+GGG | 0.535516 | 7_3:-78062784 | Msa1126500:CDS |
| TTGACAAAGGACATCATGTA+AGG | 0.537139 | 7_3:-78061393 | Msa1126500:CDS |
| GTTGAGTCAATGGATTGTGT+TGG | 0.540900 | 7_3:-78060980 | Msa1126500:three_prime_UTR |
| CAATTGGGAGATTAGATCAC+AGG | 0.542512 | 7_3:-78061346 | Msa1126500:exon |
| CGCGACTGCAATTGCGAATG+TGG | 0.542602 | 7_3:-78063625 | Msa1126500:CDS |
| GAATGTGAAGCCGCCAACAA+AGG | 0.544205 | 7_3:+78062427 | None:intergenic |
| GGAGAATCCGACACAAACTC+AGG | 0.544748 | 7_3:+78062833 | None:intergenic |
| TCGGATTCTCCAAGGCTCAA+TGG | 0.544952 | 7_3:-78062821 | Msa1126500:CDS |
| AGCGCTGTTTGTTGAGTCAA+TGG | 0.545187 | 7_3:-78060990 | Msa1126500:three_prime_UTR |
| CATGAGGCTTCAAGCACTTG+AGG | 0.547249 | 7_3:-78062579 | Msa1126500:CDS |
| TGATAATTCAAAACACGTTG+TGG | 0.548600 | 7_3:-78063729 | Msa1126500:five_prime_UTR |
| CCTAGGGAGTTTGGAAATCA+GGG | 0.549475 | 7_3:-78062635 | Msa1126500:CDS |
| TCAATGGTAGCTTTAGGAAG+AGG | 0.551484 | 7_3:-78062805 | Msa1126500:CDS |
| TTGAGGAAACGGAGAAGAAG+GGG | 0.551587 | 7_3:+78064114 | None:intergenic |
| CGTCATATTATCACCAGCCT+CGG | 0.554657 | 7_3:+78062727 | None:intergenic |
| TACAGATTTGTGTTCAATTG+GGG | 0.555010 | 7_3:-78063838 | Msa1126500:intron |
| GGACAGGGAATCAATGAGGC+AGG | 0.555216 | 7_3:-78062555 | Msa1126500:CDS |
| TGAGGAAACGGAGAAGAAGG+GGG | 0.555386 | 7_3:+78064115 | None:intergenic |
| AACCCCAACTTATAGTCAGA+TGG | 0.560746 | 7_3:-78062963 | Msa1126500:CDS |
| ATGTGTTTGGGGAAACTCCA+AGG | 0.561976 | 7_3:-78063030 | Msa1126500:CDS |
| TCAAGCACTTGAGGCGGACA+GGG | 0.562181 | 7_3:-78062570 | Msa1126500:CDS |
| GAGGACGTGTCATGACCAGC+AGG | 0.563649 | 7_3:-78063290 | Msa1126500:CDS |
| AAGGACATCATGTAAGGTCG+TGG | 0.564376 | 7_3:-78061387 | Msa1126500:CDS |
| ATGTGTGGCTTTACGTGAAG+CGG | 0.564878 | 7_3:-78063479 | Msa1126500:CDS |
| CACCATGAAATGGAAAAGGT+GGG | 0.566484 | 7_3:-78063553 | Msa1126500:CDS |
| AGTTTGTGTCGGATTCTCCA+AGG | 0.567679 | 7_3:-78062829 | Msa1126500:CDS |
| ACACCATGAAATGGAAAAGG+TGG | 0.568062 | 7_3:-78063554 | Msa1126500:CDS |
| GTTTGGCCCTGAGTTTGTGT+CGG | 0.571530 | 7_3:-78062840 | Msa1126500:CDS |
| GTTCTGAATTGGAAGAGGAA+AGG | 0.572811 | 7_3:-78063423 | Msa1126500:CDS |
| TCACAGGCTAGGATCATATG+TGG | 0.574093 | 7_3:-78061330 | Msa1126500:three_prime_UTR |
| TGGGAAGAATGTTATAGAGA+AGG | 0.574569 | 7_3:-78062927 | Msa1126500:CDS |
| CGACAACCTTCCTTGTGTTG+GGG | 0.576907 | 7_3:-78064216 | Msa1126500:five_prime_UTR |
| TCTGTGTCTGCCCCAACACA+AGG | 0.578135 | 7_3:+78064206 | None:intergenic |
| ATAAAGAAATAAATCTTCAA+CGG | 0.581260 | 7_3:+78063764 | None:intergenic |
| CTAAAGCTAAAAGCTCCTGC+TGG | 0.583273 | 7_3:+78063275 | None:intergenic |
| TTACATGATGTCCTTTGTCA+AGG | 0.584012 | 7_3:+78061395 | None:intergenic |
| CCAACTTATAGTCAGATGGA+TGG | 0.584768 | 7_3:-78062959 | Msa1126500:CDS |
| GGGCTACCATCTAGCAACAC+TGG | 0.588233 | 7_3:-78061430 | Msa1126500:CDS |
| CCCTGATTTCCAAACTCCCT+AGG | 0.591505 | 7_3:+78062635 | None:intergenic |
| AGAAAAGAAGGTGTTTGGCA+AGG | 0.592522 | 7_3:-78063814 | Msa1126500:five_prime_UTR |
| GAAAAGGTGGGGAAATTGAA+CGG | 0.592525 | 7_3:-78063541 | Msa1126500:CDS |
| ATTACATTACATTTCAAAGG+AGG | 0.595172 | 7_3:+78063112 | None:intergenic |
| GAGGAAACGGAGAAGAAGGG+GGG | 0.597961 | 7_3:+78064116 | None:intergenic |
| ATCCATCTGACTATAAGTTG+GGG | 0.600695 | 7_3:+78062961 | None:intergenic |
| AAAGGAGGATACTCATAAGG+TGG | 0.605904 | 7_3:+78063127 | None:intergenic |
| TGAATATGTAACAACTCCTA+GGG | 0.605927 | 7_3:-78062651 | Msa1126500:CDS |
| AACTTATAGTCAGATGGATG+GGG | 0.607336 | 7_3:-78062957 | Msa1126500:CDS |
| GAATAATAATAATGGGTCAG+GGG | 0.608186 | 7_3:-78062783 | Msa1126500:CDS |
| CTCAAGAGTGATGCTTTGTG+CGG | 0.610587 | 7_3:-78061237 | Msa1126500:three_prime_UTR |
| AAGGAACGCTGCTTCGTCCG+CGG | 0.613406 | 7_3:-78063404 | Msa1126500:CDS |
| ACCATGAAATGGAAAAGGTG+GGG | 0.614402 | 7_3:-78063552 | Msa1126500:CDS |
| AGAAATACCTTGAAGAAGTG+TGG | 0.614816 | 7_3:+78064091 | None:intergenic |
| ATTGACTCTGAATTCAAAAG+CGG | 0.615809 | 7_3:-78062689 | Msa1126500:CDS |
| TGTTCGCGTTGAAATTGGGG+AGG | 0.616199 | 7_3:-78063503 | Msa1126500:CDS |
| ATTGTTTCCTGGAGAAAGAG+AGG | 0.622679 | 7_3:-78062229 | Msa1126500:CDS |
| GGGAGATTAGATCACAGGCT+AGG | 0.623451 | 7_3:-78061341 | Msa1126500:exon |
| TTATGGCTTGACTGAGTCAG+AGG | 0.625650 | 7_3:-78063173 | Msa1126500:CDS |
| TTACTAATGCTCCTTGACAA+AGG | 0.626578 | 7_3:-78061406 | Msa1126500:CDS |
| TGAAATTGGGGAGGAATGTG+TGG | 0.627744 | 7_3:-78063494 | Msa1126500:CDS |
| ATGTAAAGAAGCTTTACATG+AGG | 0.629070 | 7_3:-78062595 | Msa1126500:CDS |
| ATTGAGATTGCAGACTGAGA+AGG | 0.630429 | 7_3:-78063359 | Msa1126500:CDS |
| CGAGGCTGGTGATAATATGA+CGG | 0.632376 | 7_3:-78062726 | Msa1126500:CDS |
| TGTTGAGAAGTATGTGTTTG+GGG | 0.637549 | 7_3:-78063041 | Msa1126500:CDS |
| GAAGGTAGATAATTTGTCCG+AGG | 0.640933 | 7_3:-78062744 | Msa1126500:CDS |
| TGTCTGCCCCAACACAAGGA+AGG | 0.642123 | 7_3:+78064210 | None:intergenic |
| TGTGTTTGGGGAAACTCCAA+GGG | 0.642552 | 7_3:-78063029 | Msa1126500:CDS |
| ACATATTCATCAAAAGCACC+AGG | 0.644085 | 7_3:+78062665 | None:intergenic |
| CAGCATGGCATGTACATGAG+AGG | 0.649118 | 7_3:+78061076 | None:intergenic |
| AAGGTGTTTGGCAAGGAGGG+AGG | 0.651679 | 7_3:-78063807 | Msa1126500:five_prime_UTR |
| GAGAATCCGACACAAACTCA+GGG | 0.656277 | 7_3:+78062834 | None:intergenic |
| CACAGGCTAGGATCATATGT+GGG | 0.656979 | 7_3:-78061329 | Msa1126500:three_prime_UTR |
| TAATGTAATGCATGTTTCTG+CGG | 0.660930 | 7_3:-78063098 | Msa1126500:CDS |
| CGACATTGTTTCATTCGCCG+CGG | 0.664931 | 7_3:+78063387 | None:intergenic |
| GTTGGTTGATCTGTGAAACA+TGG | 0.665552 | 7_3:-78061174 | Msa1126500:three_prime_UTR |
| GTATAATGTACGAAGAAGTG+AGG | 0.670881 | 7_3:+78061046 | None:intergenic |
| AAGTGAGGACACTTACAGCA+TGG | 0.674154 | 7_3:+78061061 | None:intergenic |
| AGGCGGACAGGGAATCAATG+AGG | 0.683449 | 7_3:-78062559 | Msa1126500:CDS |
| ACTGAGTCAGAGGTAGAAGG+TGG | 0.685416 | 7_3:-78063163 | Msa1126500:CDS |
| GAGGCTTCAAGCACTTGAGG+CGG | 0.691923 | 7_3:-78062576 | Msa1126500:CDS |
| AAGGTGGGGAAATTGAACGG+TGG | 0.706112 | 7_3:-78063538 | Msa1126500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATACACAAAAATCT+AGG | - | chr7_3:78061046-78061065 | Msa1126500:three_prime_UTR | 15.0% |
| !! | AAAATATACACAAAAATCTA+GGG | - | chr7_3:78061047-78061066 | Msa1126500:three_prime_UTR | 15.0% |
| !! | AGGTAAATAATAATATTAAG+AGG | + | chr7_3:78061186-78061205 | None:intergenic | 15.0% |
| !! | AGGATAAAAAAAAAAAACAT+AGG | + | chr7_3:78061220-78061239 | None:intergenic | 15.0% |
| !!! | CTTATGTAGTTTTATAATTA+AGG | + | chr7_3:78061240-78061259 | None:intergenic | 15.0% |
| !! | CTTAATTATAAAACTACATA+AGG | - | chr7_3:78061238-78061257 | Msa1126500:three_prime_UTR | 15.0% |
| !! | AATATAACTACAATGAAAAA+TGG | + | chr7_3:78061302-78061321 | None:intergenic | 15.0% |
| !! | ATAAAGAAATAAATCTTCAA+CGG | + | chr7_3:78061467-78061486 | None:intergenic | 15.0% |
| !! | TGTTATTATATTACATTACA+TGG | - | chr7_3:78061533-78061552 | Msa1126500:intron | 15.0% |
| !! | TTTAACATGTATAATATCAT+AGG | + | chr7_3:78063277-78063296 | None:intergenic | 15.0% |
| !!! | ACTAATTTTTTAAGAGATTA+TGG | + | chr7_3:78063335-78063354 | None:intergenic | 15.0% |
| !!! | TAATGGATAATTAATTTCAA+GGG | - | chr7_3:78063378-78063397 | Msa1126500:CDS | 15.0% |
| !!! | AATGTAATATTGTAATTTGT+TGG | - | chr7_3:78064036-78064055 | Msa1126500:intron | 15.0% |
| !! | TATATTACATTACATGGATT+TGG | - | chr7_3:78061539-78061558 | Msa1126500:intron | 20.0% |
| !! | ATTATCTACCTTCTTAAAAT+TGG | + | chr7_3:78062477-78062496 | None:intergenic | 20.0% |
| !!! | AAACTATTGTTTTCTTTCAA+TGG | + | chr7_3:78063164-78063183 | None:intergenic | 20.0% |
| !! | GAAATTAATTATCCATTACT+TGG | + | chr7_3:78063376-78063395 | None:intergenic | 20.0% |
| !!! | GTAATGGATAATTAATTTCA+AGG | - | chr7_3:78063377-78063396 | Msa1126500:CDS | 20.0% |
| !! | AATGGATAATTAATTTCAAG+GGG | - | chr7_3:78063379-78063398 | Msa1126500:CDS | 20.0% |
| !!! | AAATCTGTTATTGATTTTAG+TGG | - | chr7_3:78063406-78063425 | Msa1126500:CDS | 20.0% |
| ! | TAAGAGGAGAATGAATAAAA+GGG | + | chr7_3:78061170-78061189 | None:intergenic | 25.0% |
| ! | TTAAGAGGAGAATGAATAAA+AGG | + | chr7_3:78061171-78061190 | None:intergenic | 25.0% |
| !! | AAACATAGGAATTTTTACAG+AGG | + | chr7_3:78061206-78061225 | None:intergenic | 25.0% |
| ! | CAATGAAAAATGGAAATTGA+GGG | + | chr7_3:78061292-78061311 | None:intergenic | 25.0% |
| ! | ACAATGAAAAATGGAAATTG+AGG | + | chr7_3:78061293-78061312 | None:intergenic | 25.0% |
| !!! | ACAATTTAAACGTTTTGTTG+AGG | - | chr7_3:78061914-78061933 | Msa1126500:intron | 25.0% |
| ! | TAGAGGAATTGTTGTATAAA+AGG | - | chr7_3:78061973-78061992 | Msa1126500:intron | 25.0% |
| ! | AGAGGAATTGTTGTATAAAA+GGG | - | chr7_3:78061974-78061993 | Msa1126500:intron | 25.0% |
| ! | ATTACATTACATTTCAAAGG+AGG | + | chr7_3:78062119-78062138 | None:intergenic | 25.0% |
| ! | TGCATTACATTACATTTCAA+AGG | + | chr7_3:78062122-78062141 | None:intergenic | 25.0% |
| ! | AGGAAGAGGAATAATAATAA+TGG | - | chr7_3:78062437-78062456 | Msa1126500:CDS | 25.0% |
| ! | GGAAGAGGAATAATAATAAT+GGG | - | chr7_3:78062438-78062457 | Msa1126500:CDS | 25.0% |
| ! | ATGTAAAGCTTCTTTACATA+AGG | + | chr7_3:78062632-78062651 | None:intergenic | 25.0% |
| ! | TAAGGTAATTTAATTGCAGA+TGG | - | chr7_3:78062835-78062854 | Msa1126500:CDS | 25.0% |
| !! | TGAAACAGAATAAGTATTGT+TGG | + | chr7_3:78062949-78062968 | None:intergenic | 25.0% |
| !! | AGTCTTTGTTTCAAAATGTA+TGG | - | chr7_3:78063053-78063072 | Msa1126500:CDS | 25.0% |
| !! | TGTTTTCTTTCAATGGTTTA+TGG | + | chr7_3:78063157-78063176 | None:intergenic | 25.0% |
| ! | ATGATGCATTGAAATTTCAT+AGG | + | chr7_3:78063254-78063273 | None:intergenic | 25.0% |
| ! | ATGGATAATTAATTTCAAGG+GGG | - | chr7_3:78063380-78063399 | Msa1126500:CDS | 25.0% |
| !!! | TATTGATTTTAGTGGAGAAA+TGG | - | chr7_3:78063414-78063433 | Msa1126500:CDS | 25.0% |
| ! | ATCTAAGCATATCCTTATAT+TGG | - | chr7_3:78063520-78063539 | Msa1126500:CDS | 25.0% |
| ! | ATAGAAAATGTTTGTTTGAG+AGG | + | chr7_3:78063546-78063565 | None:intergenic | 25.0% |
| ! | ATATGTTTCAAGAATGCAAT+TGG | - | chr7_3:78063866-78063885 | Msa1126500:intron | 25.0% |
| ! | TATGTTTCAAGAATGCAATT+GGG | - | chr7_3:78063867-78063886 | Msa1126500:intron | 25.0% |
| AGGGAAGAATGATAGTAATT+TGG | + | chr7_3:78061076-78061095 | None:intergenic | 30.0% | |
| TGTACAGATTTGTGTTCAAT+TGG | - | chr7_3:78061388-78061407 | Msa1126500:CDS | 30.0% | |
| GTACAGATTTGTGTTCAATT+GGG | - | chr7_3:78061389-78061408 | Msa1126500:CDS | 30.0% | |
| TACAGATTTGTGTTCAATTG+GGG | - | chr7_3:78061390-78061409 | Msa1126500:CDS | 30.0% | |
| TGATAATTCAAAACACGTTG+TGG | - | chr7_3:78061499-78061518 | Msa1126500:intron | 30.0% | |
| ! | TCAAGATTTGTGTTCTGAAT+TGG | - | chr7_3:78061794-78061813 | Msa1126500:intron | 30.0% |
| ! | TAATGTAATGCATGTTTCTG+CGG | - | chr7_3:78062130-78062149 | Msa1126500:intron | 30.0% |
| ! | ATGTTGAGAAGTATGTGTTT+GGG | - | chr7_3:78062186-78062205 | Msa1126500:intron | 30.0% |
| GGAGAATAGAATATCTCAAA+TGG | - | chr7_3:78062238-78062257 | Msa1126500:CDS | 30.0% | |
| !! | AGGAATAATAATAATGGGTC+AGG | - | chr7_3:78062443-78062462 | Msa1126500:CDS | 30.0% |
| !! | GGAATAATAATAATGGGTCA+GGG | - | chr7_3:78062444-78062463 | Msa1126500:CDS | 30.0% |
| !! | GAATAATAATAATGGGTCAG+GGG | - | chr7_3:78062445-78062464 | Msa1126500:CDS | 30.0% |
| !! | GGATTTCTCCAATTTTAAGA+AGG | - | chr7_3:78062466-78062485 | Msa1126500:CDS | 30.0% |
| ! | ATTGACTCTGAATTCAAAAG+CGG | - | chr7_3:78062539-78062558 | Msa1126500:CDS | 30.0% |
| ATGAATATGTAACAACTCCT+AGG | - | chr7_3:78062576-78062595 | Msa1126500:CDS | 30.0% | |
| TGAATATGTAACAACTCCTA+GGG | - | chr7_3:78062577-78062596 | Msa1126500:CDS | 30.0% | |
| ATGTAAAGAAGCTTTACATG+AGG | - | chr7_3:78062633-78062652 | Msa1126500:CDS | 30.0% | |
| ! | CACATTCTTCACAGTTTTTA+AGG | - | chr7_3:78062817-78062836 | Msa1126500:CDS | 30.0% |
| ! | ATCTTTCTTTTGTGTACAGT+GGG | - | chr7_3:78062968-78062987 | Msa1126500:CDS | 30.0% |
| !! | TTTTACTGATAATGCATACC+AGG | - | chr7_3:78063198-78063217 | Msa1126500:CDS | 30.0% |
| CTTAAGAAATATAGATTGCC+TGG | + | chr7_3:78063219-78063238 | None:intergenic | 30.0% | |
| CAGGCAATCTATATTTCTTA+AGG | - | chr7_3:78063217-78063236 | Msa1126500:CDS | 30.0% | |
| ! | GAAATGGTGATTACTGATTA+AGG | - | chr7_3:78063430-78063449 | Msa1126500:CDS | 30.0% |
| TTGTATCTAGCAACTATGAT+AGG | - | chr7_3:78063585-78063604 | Msa1126500:CDS | 30.0% | |
| ! | TTTTCCTATAGTGAGTTTAG+AGG | - | chr7_3:78063669-78063688 | Msa1126500:CDS | 30.0% |
| TTTCCTATAGTGAGTTTAGA+GGG | - | chr7_3:78063670-78063689 | Msa1126500:CDS | 30.0% | |
| TCTTGAGAGAAAAATCTAAG+GGG | + | chr7_3:78063978-78063997 | None:intergenic | 30.0% | |
| CTCTTGAGAGAAAAATCTAA+GGG | + | chr7_3:78063979-78063998 | None:intergenic | 30.0% | |
| ACTCTTGAGAGAAAAATCTA+AGG | + | chr7_3:78063980-78063999 | None:intergenic | 30.0% | |
| TGTGAAACATGGTTATGATT+TGG | - | chr7_3:78064065-78064084 | Msa1126500:intron | 30.0% | |
| AGAAATACCTTGAAGAAGTG+TGG | + | chr7_3:78061140-78061159 | None:intergenic | 35.0% | |
| TTCAATTGGGGAAGAAAAGA+AGG | - | chr7_3:78061402-78061421 | Msa1126500:CDS | 35.0% | |
| GAAACACCATGAAATGGAAA+AGG | - | chr7_3:78061671-78061690 | Msa1126500:intron | 35.0% | |
| ! | TTTGTGTTCTGAATTGGAAG+AGG | - | chr7_3:78061800-78061819 | Msa1126500:intron | 35.0% |
| !! | TTAAACGTTTTGTTGAGGAG+AGG | - | chr7_3:78061919-78061938 | Msa1126500:intron | 35.0% |
| AAGCATAGAATGCTGAGTTA+TGG | - | chr7_3:78062038-78062057 | Msa1126500:intron | 35.0% | |
| TTCAAAGGAGGATACTCATA+AGG | + | chr7_3:78062107-78062126 | None:intergenic | 35.0% | |
| ! | GATGTTGAGAAGTATGTGTT+TGG | - | chr7_3:78062185-78062204 | Msa1126500:intron | 35.0% |
| ! | TGTTGAGAAGTATGTGTTTG+GGG | - | chr7_3:78062187-78062206 | Msa1126500:intron | 35.0% |
| ATCCATCTGACTATAAGTTG+GGG | + | chr7_3:78062270-78062289 | None:intergenic | 35.0% | |
| CATCCATCTGACTATAAGTT+GGG | + | chr7_3:78062271-78062290 | None:intergenic | 35.0% | |
| CAACTTATAGTCAGATGGAT+GGG | - | chr7_3:78062270-78062289 | Msa1126500:intron | 35.0% | |
| AACTTATAGTCAGATGGATG+GGG | - | chr7_3:78062271-78062290 | Msa1126500:intron | 35.0% | |
| TGGGAAGAATGTTATAGAGA+AGG | - | chr7_3:78062301-78062320 | Msa1126500:intron | 35.0% | |
| GTTATAGAGAAGGTGATAGT+TGG | - | chr7_3:78062311-78062330 | Msa1126500:intron | 35.0% | |
| CTCGAATGTTTATTCGTACT+AGG | + | chr7_3:78062344-78062363 | None:intergenic | 35.0% | |
| CTAGTACGAATAAACATTCG+AGG | - | chr7_3:78062342-78062361 | Msa1126500:intron | 35.0% | |
| !! | ACATATTCATCAAAAGCACC+AGG | + | chr7_3:78062566-78062585 | None:intergenic | 35.0% |
| CAAAACAAGCTGTGCTTTAT+CGG | + | chr7_3:78062717-78062736 | None:intergenic | 35.0% | |
| ACATTAACTCTCTTCTGTTC+TGG | + | chr7_3:78062776-78062795 | None:intergenic | 35.0% | |
| GTTAATGTGAGATCCTTTGT+TGG | - | chr7_3:78062788-78062807 | Msa1126500:CDS | 35.0% | |
| AATTTAATTGCAGATGGTGC+AGG | - | chr7_3:78062841-78062860 | Msa1126500:CDS | 35.0% | |
| AATCATCTCAATCGAACCTT+GGG | + | chr7_3:78062903-78062922 | None:intergenic | 35.0% | |
| ! | CATCTTTCTTTTGTGTACAG+TGG | - | chr7_3:78062967-78062986 | Msa1126500:CDS | 35.0% |
| CAAATCAAGTAAGTAGTCAG+TGG | - | chr7_3:78063026-78063045 | Msa1126500:CDS | 35.0% | |
| ACTACTTATCATACTAGGTG+AGG | + | chr7_3:78063080-78063099 | None:intergenic | 35.0% | |
| CACCTAGTATGATAAGTAGT+CGG | - | chr7_3:78063080-78063099 | Msa1126500:CDS | 35.0% | |
| GAATACTGACACAGTTTCTA+TGG | - | chr7_3:78063462-78063481 | Msa1126500:CDS | 35.0% | |
| ! | AGTTTCTATGGAATGCCTTT+TGG | - | chr7_3:78063474-78063493 | Msa1126500:CDS | 35.0% |
| TTGTTTGAGAGGCCAATATA+AGG | + | chr7_3:78063535-78063554 | None:intergenic | 35.0% | |
| AACATATACCTACAGTCACA+AGG | + | chr7_3:78063777-78063796 | None:intergenic | 35.0% | |
| TGTGACTGTAGGTATATGTT+TGG | - | chr7_3:78063777-78063796 | Msa1126500:five_prime_UTR | 35.0% | |
| GTGACTGTAGGTATATGTTT+GGG | - | chr7_3:78063778-78063797 | Msa1126500:five_prime_UTR | 35.0% | |
| TTACTAATGCTCCTTGACAA+AGG | - | chr7_3:78063822-78063841 | Msa1126500:five_prime_UTR | 35.0% | |
| TTACATGATGTCCTTTGTCA+AGG | + | chr7_3:78063836-78063855 | None:intergenic | 35.0% | |
| TTGACAAAGGACATCATGTA+AGG | - | chr7_3:78063835-78063854 | Msa1126500:five_prime_UTR | 35.0% | |
| CTTGAGAGAAAAATCTAAGG+GGG | + | chr7_3:78063977-78063996 | None:intergenic | 35.0% | |
| GTATAATGTACGAAGAAGTG+AGG | + | chr7_3:78064185-78064204 | None:intergenic | 35.0% | |
| !! | TTGAGTCAATGGATTGTGTT+GGG | - | chr7_3:78064249-78064268 | Msa1126500:five_prime_UTR | 35.0% |
| ! | AAGAAGTGTGGTTGAGGAAA+CGG | + | chr7_3:78061128-78061147 | None:intergenic | 40.0% |
| TGTGTGTGAAATGATGCTTC+TGG | + | chr7_3:78061269-78061288 | None:intergenic | 40.0% | |
| !! | AGAAAAGAAGGTGTTTGGCA+AGG | - | chr7_3:78061414-78061433 | Msa1126500:CDS | 40.0% |
| CCAATTCTTGGAACATCGTT+CGG | + | chr7_3:78061634-78061653 | None:intergenic | 40.0% | |
| TTCCAAGAATTGGATCCGTT+CGG | - | chr7_3:78061641-78061660 | Msa1126500:intron | 40.0% | |
| GAAACGGAAACACCATGAAA+TGG | - | chr7_3:78061665-78061684 | Msa1126500:intron | 40.0% | |
| ACACCATGAAATGGAAAAGG+TGG | - | chr7_3:78061674-78061693 | Msa1126500:intron | 40.0% | |
| CACCATGAAATGGAAAAGGT+GGG | - | chr7_3:78061675-78061694 | Msa1126500:intron | 40.0% | |
| ACCATGAAATGGAAAAGGTG+GGG | - | chr7_3:78061676-78061695 | Msa1126500:intron | 40.0% | |
| GAAAAGGTGGGGAAATTGAA+CGG | - | chr7_3:78061687-78061706 | Msa1126500:intron | 40.0% | |
| ! | GTTCTGAATTGGAAGAGGAA+AGG | - | chr7_3:78061805-78061824 | Msa1126500:intron | 40.0% |
| ATTGAGATTGCAGACTGAGA+AGG | - | chr7_3:78061869-78061888 | Msa1126500:intron | 40.0% | |
| TTCACTTACGTGTGAAGTTC+AGG | - | chr7_3:78062010-78062029 | Msa1126500:intron | 40.0% | |
| AAAGGAGGATACTCATAAGG+TGG | + | chr7_3:78062104-78062123 | None:intergenic | 40.0% | |
| AAATTCCTCAAACGATCCCT+TGG | + | chr7_3:78062218-78062237 | None:intergenic | 40.0% | |
| AAGGGATCGTTTGAGGAATT+TGG | - | chr7_3:78062217-78062236 | Msa1126500:CDS | 40.0% | |
| AACCCCAACTTATAGTCAGA+TGG | - | chr7_3:78062265-78062284 | Msa1126500:intron | 40.0% | |
| CCATCCATCTGACTATAAGT+TGG | + | chr7_3:78062272-78062291 | None:intergenic | 40.0% | |
| CCAACTTATAGTCAGATGGA+TGG | - | chr7_3:78062269-78062288 | Msa1126500:intron | 40.0% | |
| AGATGGATGGGGATTTCAAT+GGG | - | chr7_3:78062282-78062301 | Msa1126500:intron | 40.0% | |
| !! | TCAATGGTAGCTTTAGGAAG+AGG | - | chr7_3:78062423-78062442 | Msa1126500:CDS | 40.0% |
| ! | GAAGGTAGATAATTTGTCCG+AGG | - | chr7_3:78062484-78062503 | Msa1126500:CDS | 40.0% |
| AATGTGAGATCCTTTGTTGG+CGG | - | chr7_3:78062791-78062810 | Msa1126500:CDS | 40.0% | |
| CAATCATCTCAATCGAACCT+TGG | + | chr7_3:78062904-78062923 | None:intergenic | 40.0% | |
| ATTGTTTCCTGGAGAAAGAG+AGG | - | chr7_3:78062999-78063018 | Msa1126500:CDS | 40.0% | |
| AGCCGACTACTTATCATACT+AGG | + | chr7_3:78063085-78063104 | None:intergenic | 40.0% | |
| TTTGCAGCAATGCCAAGTAA+TGG | - | chr7_3:78063361-78063380 | Msa1126500:CDS | 40.0% | |
| TACACGTTAGTCAGTCCAAA+AGG | + | chr7_3:78063492-78063511 | None:intergenic | 40.0% | |
| GTACCCTCTAAACTCACTAT+AGG | + | chr7_3:78063676-78063695 | None:intergenic | 40.0% | |
| !!! | GCTTGCTCTCTTTTTTTCAC+AGG | + | chr7_3:78063716-78063735 | None:intergenic | 40.0% |
| CAATTGGGAGATTAGATCAC+AGG | - | chr7_3:78063882-78063901 | Msa1126500:intron | 40.0% | |
| GAGCACCAAATGAAACTTCA+TGG | - | chr7_3:78063921-78063940 | Msa1126500:intron | 40.0% | |
| CAGTGCCATGAAGTTTCATT+TGG | + | chr7_3:78063929-78063948 | None:intergenic | 40.0% | |
| GTTGGTTGATCTGTGAAACA+TGG | - | chr7_3:78064054-78064073 | Msa1126500:intron | 40.0% | |
| TACATGAGAGGACTGTCTAA+TGG | + | chr7_3:78064143-78064162 | None:intergenic | 40.0% | |
| !! | GTTGAGTCAATGGATTGTGT+TGG | - | chr7_3:78064248-78064267 | Msa1126500:five_prime_UTR | 40.0% |
| ATCGACAACCTTCCTTGTGT+TGG | - | chr7_3:78061010-78061029 | Msa1126500:three_prime_UTR | 45.0% | |
| TCGACAACCTTCCTTGTGTT+GGG | - | chr7_3:78061011-78061030 | Msa1126500:three_prime_UTR | 45.0% | |
| !! | GGGTGTATGTTTGGTTTGGA+GGG | + | chr7_3:78061095-78061114 | None:intergenic | 45.0% |
| TTGAGGAAACGGAGAAGAAG+GGG | + | chr7_3:78061117-78061136 | None:intergenic | 45.0% | |
| GTTGAGGAAACGGAGAAGAA+GGG | + | chr7_3:78061118-78061137 | None:intergenic | 45.0% | |
| TCCTCAACCACACTTCTTCA+AGG | - | chr7_3:78061130-78061149 | Msa1126500:three_prime_UTR | 45.0% | |
| ! | ACCTTGAAGAAGTGTGGTTG+AGG | + | chr7_3:78061134-78061153 | None:intergenic | 45.0% |
| !! | GGGGAAGAAAAGAAGGTGTT+TGG | - | chr7_3:78061409-78061428 | Msa1126500:CDS | 45.0% |
| !! | AAAGAAGGTGTTTGGCAAGG+AGG | - | chr7_3:78061417-78061436 | Msa1126500:CDS | 45.0% |
| !! | AAGAAGGTGTTTGGCAAGGA+GGG | - | chr7_3:78061418-78061437 | Msa1126500:CDS | 45.0% |
| CCGAACGATGTTCCAAGAAT+TGG | - | chr7_3:78061631-78061650 | Msa1126500:intron | 45.0% | |
| ! | ATTGGATCCGTTCGGTGAAA+CGG | - | chr7_3:78061649-78061668 | Msa1126500:intron | 45.0% |
| ! | TCCCCACCTTTTCCATTTCA+TGG | + | chr7_3:78061680-78061699 | None:intergenic | 45.0% |
| ! | AAATTGAACGGTGGTGGTGA+TGG | - | chr7_3:78061699-78061718 | Msa1126500:intron | 45.0% |
| GCGTTGTTCGCGTTGAAATT+GGG | - | chr7_3:78061721-78061740 | Msa1126500:intron | 45.0% | |
| CGTTGTTCGCGTTGAAATTG+GGG | - | chr7_3:78061722-78061741 | Msa1126500:intron | 45.0% | |
| TGAAATTGGGGAGGAATGTG+TGG | - | chr7_3:78061734-78061753 | Msa1126500:intron | 45.0% | |
| ! | ATGTGTGGCTTTACGTGAAG+CGG | - | chr7_3:78061749-78061768 | Msa1126500:intron | 45.0% |
| CTAAAGCTAAAAGCTCCTGC+TGG | + | chr7_3:78061956-78061975 | None:intergenic | 45.0% | |
| !!! | GCAGGAGCTTTTAGCTTTAG+AGG | - | chr7_3:78061956-78061975 | Msa1126500:intron | 45.0% |
| TTATGGCTTGACTGAGTCAG+AGG | - | chr7_3:78062055-78062074 | Msa1126500:intron | 45.0% | |
| TTGACTGAGTCAGAGGTAGA+AGG | - | chr7_3:78062062-78062081 | Msa1126500:intron | 45.0% | |
| ATGTGTTTGGGGAAACTCCA+AGG | - | chr7_3:78062198-78062217 | Msa1126500:intron | 45.0% | |
| TGTGTTTGGGGAAACTCCAA+GGG | - | chr7_3:78062199-78062218 | Msa1126500:intron | 45.0% | |
| AAACTCCAAGGGATCGTTTG+AGG | - | chr7_3:78062210-78062229 | Msa1126500:intron | 45.0% | |
| CAGATGGATGGGGATTTCAA+TGG | - | chr7_3:78062281-78062300 | Msa1126500:intron | 45.0% | |
| GAGAATCCGACACAAACTCA+GGG | + | chr7_3:78062397-78062416 | None:intergenic | 45.0% | |
| AGTTTGTGTCGGATTCTCCA+AGG | - | chr7_3:78062399-78062418 | Msa1126500:intron | 45.0% | |
| CTAAAGCTACCATTGAGCCT+TGG | + | chr7_3:78062419-78062438 | None:intergenic | 45.0% | |
| CAAGGCTCAATGGTAGCTTT+AGG | - | chr7_3:78062417-78062436 | Msa1126500:CDS | 45.0% | |
| ! | GTAGATAATTTGTCCGAGGC+TGG | - | chr7_3:78062488-78062507 | Msa1126500:CDS | 45.0% |
| CGTCATATTATCACCAGCCT+CGG | + | chr7_3:78062504-78062523 | None:intergenic | 45.0% | |
| CGAGGCTGGTGATAATATGA+CGG | - | chr7_3:78062502-78062521 | Msa1126500:CDS | 45.0% | |
| TCTGAATTCAAAAGCGGACC+TGG | - | chr7_3:78062545-78062564 | Msa1126500:CDS | 45.0% | |
| GTAACAACTCCTAGGGAGTT+TGG | - | chr7_3:78062584-78062603 | Msa1126500:CDS | 45.0% | |
| TCCTAGGGAGTTTGGAAATC+AGG | - | chr7_3:78062592-78062611 | Msa1126500:CDS | 45.0% | |
| CCTAGGGAGTTTGGAAATCA+GGG | - | chr7_3:78062593-78062612 | Msa1126500:CDS | 45.0% | |
| !!! | AGCACAGCTTGTTTTGCTCA+AGG | - | chr7_3:78062721-78062740 | Msa1126500:CDS | 45.0% |
| !! | TTTGCCCATTTTTCAGCCCA+AGG | - | chr7_3:78062884-78062903 | Msa1126500:CDS | 45.0% |
| CGAACCTTGGGCTGAAAAAT+GGG | + | chr7_3:78062891-78062910 | None:intergenic | 45.0% | |
| TCGAACCTTGGGCTGAAAAA+TGG | + | chr7_3:78062892-78062911 | None:intergenic | 45.0% | |
| ! | TTGATGACCTCTCTTTCTCC+AGG | + | chr7_3:78063009-78063028 | None:intergenic | 45.0% |
| GGACTGACTAACGTGTACAA+TGG | - | chr7_3:78063495-78063514 | Msa1126500:CDS | 45.0% | |
| TCTGAACTCCTTGTGACTGT+AGG | - | chr7_3:78063766-78063785 | Msa1126500:five_prime_UTR | 45.0% | |
| ! | AGTAAGCCAGTGTTGCTAGA+TGG | + | chr7_3:78063807-78063826 | None:intergenic | 45.0% |
| AAGGACATCATGTAAGGTCG+TGG | - | chr7_3:78063841-78063860 | Msa1126500:intron | 45.0% | |
| TCACAGGCTAGGATCATATG+TGG | - | chr7_3:78063898-78063917 | Msa1126500:intron | 45.0% | |
| CACAGGCTAGGATCATATGT+GGG | - | chr7_3:78063899-78063918 | Msa1126500:intron | 45.0% | |
| CTCAAGAGTGATGCTTTGTG+CGG | - | chr7_3:78063991-78064010 | Msa1126500:intron | 45.0% | |
| AGCATTCTCTCTCGTATGCT+TGG | - | chr7_3:78064094-78064113 | Msa1126500:intron | 45.0% | |
| AAGTGAGGACACTTACAGCA+TGG | + | chr7_3:78064170-78064189 | None:intergenic | 45.0% | |
| AAACAGCGCTGCAACTTTCT+AGG | + | chr7_3:78064228-78064247 | None:intergenic | 45.0% | |
| ! | AGCGCTGTTTGTTGAGTCAA+TGG | - | chr7_3:78064238-78064257 | Msa1126500:five_prime_UTR | 45.0% |
| CGACAACCTTCCTTGTGTTG+GGG | - | chr7_3:78061012-78061031 | Msa1126500:three_prime_UTR | 50.0% | |
| !! | GGGGTGTATGTTTGGTTTGG+AGG | + | chr7_3:78061096-78061115 | None:intergenic | 50.0% |
| ! | AGGGGGGTGTATGTTTGGTT+TGG | + | chr7_3:78061099-78061118 | None:intergenic | 50.0% |
| ! | GAAGAAGGGGGGTGTATGTT+TGG | + | chr7_3:78061104-78061123 | None:intergenic | 50.0% |
| TGAGGAAACGGAGAAGAAGG+GGG | + | chr7_3:78061116-78061135 | None:intergenic | 50.0% | |
| GGTTGAGGAAACGGAGAAGA+AGG | + | chr7_3:78061119-78061138 | None:intergenic | 50.0% | |
| CACCGAACGGATCCAATTCT+TGG | + | chr7_3:78061646-78061665 | None:intergenic | 50.0% | |
| GGTGTTTCCGTTTCACCGAA+CGG | + | chr7_3:78061659-78061678 | None:intergenic | 50.0% | |
| AAGGTGGGGAAATTGAACGG+TGG | - | chr7_3:78061690-78061709 | Msa1126500:intron | 50.0% | |
| GGCGTTGTTCGCGTTGAAAT+TGG | - | chr7_3:78061720-78061739 | Msa1126500:intron | 50.0% | |
| TGTTCGCGTTGAAATTGGGG+AGG | - | chr7_3:78061725-78061744 | Msa1126500:intron | 50.0% | |
| CGACATTGTTTCATTCGCCG+CGG | + | chr7_3:78061844-78061863 | None:intergenic | 50.0% | |
| TGAGAAGGCTGAGCTTGAGA+TGG | - | chr7_3:78061884-78061903 | Msa1126500:intron | 50.0% | |
| ACTGAGTCAGAGGTAGAAGG+TGG | - | chr7_3:78062065-78062084 | Msa1126500:intron | 50.0% | |
| TCATGTGACTCGTCGTCGTT+TGG | - | chr7_3:78062371-78062390 | Msa1126500:intron | 50.0% | |
| GTTTGGCCCTGAGTTTGTGT+CGG | - | chr7_3:78062388-78062407 | Msa1126500:intron | 50.0% | |
| GGAGAATCCGACACAAACTC+AGG | + | chr7_3:78062398-78062417 | None:intergenic | 50.0% | |
| TCGGATTCTCCAAGGCTCAA+TGG | - | chr7_3:78062407-78062426 | Msa1126500:intron | 50.0% | |
| CCCTGATTTCCAAACTCCCT+AGG | + | chr7_3:78062596-78062615 | None:intergenic | 50.0% | |
| CATGAGGCTTCAAGCACTTG+AGG | - | chr7_3:78062649-78062668 | Msa1126500:CDS | 50.0% | |
| GAATGTGAAGCCGCCAACAA+AGG | + | chr7_3:78062804-78062823 | None:intergenic | 50.0% | |
| !! | GGGTTGCATCGATTGTTTCC+TGG | - | chr7_3:78062988-78063007 | Msa1126500:CDS | 50.0% |
| GGGAGATTAGATCACAGGCT+AGG | - | chr7_3:78063887-78063906 | Msa1126500:intron | 50.0% | |
| CAGCATGGCATGTACATGAG+AGG | + | chr7_3:78064155-78064174 | None:intergenic | 50.0% | |
| TGTCTGCCCCAACACAAGGA+AGG | + | chr7_3:78061021-78061040 | None:intergenic | 55.0% | |
| TCTGTGTCTGCCCCAACACA+AGG | + | chr7_3:78061025-78061044 | None:intergenic | 55.0% | |
| GAGGAAACGGAGAAGAAGGG+GGG | + | chr7_3:78061115-78061134 | None:intergenic | 55.0% | |
| ! | AAGGTGTTTGGCAAGGAGGG+AGG | - | chr7_3:78061421-78061440 | Msa1126500:CDS | 55.0% |
| CGCGACTGCAATTGCGAATG+TGG | - | chr7_3:78061603-78061622 | Msa1126500:intron | 55.0% | |
| GTGGGGAAATTGAACGGTGG+TGG | - | chr7_3:78061693-78061712 | Msa1126500:intron | 55.0% | |
| GAGGCTTCAAGCACTTGAGG+CGG | - | chr7_3:78062652-78062671 | Msa1126500:CDS | 55.0% | |
| TTCAAGCACTTGAGGCGGAC+AGG | - | chr7_3:78062657-78062676 | Msa1126500:CDS | 55.0% | |
| TCAAGCACTTGAGGCGGACA+GGG | - | chr7_3:78062658-78062677 | Msa1126500:CDS | 55.0% | |
| AGGCGGACAGGGAATCAATG+AGG | - | chr7_3:78062669-78062688 | Msa1126500:CDS | 55.0% | |
| GGACAGGGAATCAATGAGGC+AGG | - | chr7_3:78062673-78062692 | Msa1126500:CDS | 55.0% | |
| GGGCTACCATCTAGCAACAC+TGG | - | chr7_3:78063798-78063817 | Msa1126500:five_prime_UTR | 55.0% | |
| AAGGAACGCTGCTTCGTCCG+CGG | - | chr7_3:78061824-78061843 | Msa1126500:intron | 60.0% | |
| GAGGACGTGTCATGACCAGC+AGG | - | chr7_3:78061938-78061957 | Msa1126500:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 78060974 | 78064276 | 78060974 | ID=Msa1126500;Name=Msa1126500 |
| chr7_3 | mRNA | 78060974 | 78064276 | 78060974 | ID=Msa1126500-mRNA-1;Parent=Msa1126500;Name=Msa1126500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=335|1|1|1|0.66|0.5|4|380|480 |
| chr7_3 | exon | 78060974 | 78061462 | 78060974 | ID=Msa1126500-mRNA-1:exon:21679;Parent=Msa1126500-mRNA-1 |
| chr7_3 | exon | 78062217 | 78062263 | 78062217 | ID=Msa1126500-mRNA-1:exon:21678;Parent=Msa1126500-mRNA-1 |
| chr7_3 | exon | 78062412 | 78063855 | 78062412 | ID=Msa1126500-mRNA-1:exon:21677;Parent=Msa1126500-mRNA-1 |
| chr7_3 | exon | 78064099 | 78064276 | 78064099 | ID=Msa1126500-mRNA-1:exon:21676;Parent=Msa1126500-mRNA-1 |
| chr7_3 | five_prime_UTR | 78064099 | 78064276 | 78064099 | ID=Msa1126500-mRNA-1:five_prime_utr;Parent=Msa1126500-mRNA-1 |
| chr7_3 | five_prime_UTR | 78063699 | 78063855 | 78063699 | ID=Msa1126500-mRNA-1:five_prime_utr;Parent=Msa1126500-mRNA-1 |
| chr7_3 | CDS | 78062412 | 78063698 | 78062412 | ID=Msa1126500-mRNA-1:cds;Parent=Msa1126500-mRNA-1 |
| chr7_3 | CDS | 78062217 | 78062263 | 78062217 | ID=Msa1126500-mRNA-1:cds;Parent=Msa1126500-mRNA-1 |
| chr7_3 | CDS | 78061354 | 78061462 | 78061354 | ID=Msa1126500-mRNA-1:cds;Parent=Msa1126500-mRNA-1 |
| chr7_3 | three_prime_UTR | 78060974 | 78061353 | 78060974 | ID=Msa1126500-mRNA-1:three_prime_utr;Parent=Msa1126500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
