Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170290 | XP_003594440.1 | 97.521 | 121 | 3 | 0 | 1 | 121 | 19 | 139 | 3.45e-82 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170290 | sp|Q39250|ADF1_ARATH | 79.339 | 121 | 25 | 0 | 1 | 121 | 19 | 139 | 7.61e-72 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170290 | G7IFU0 | 97.521 | 121 | 3 | 0 | 1 | 121 | 19 | 139 | 1.65e-82 | 247 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0240940 | Msa1170290 | 0.804173 | 2.452508e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170290 | MtrunA17_Chr2g0291571 | 97.521 | 121 | 3 | 0 | 1 | 121 | 19 | 139 | 3.18e-86 | 247 |
| Msa1170290 | MtrunA17_Chr8g0380291 | 85.950 | 121 | 17 | 0 | 1 | 121 | 19 | 139 | 1.50e-77 | 225 |
| Msa1170290 | MtrunA17_Chr1g0182501 | 79.339 | 121 | 25 | 0 | 1 | 121 | 19 | 139 | 1.73e-72 | 212 |
| Msa1170290 | MtrunA17_Chr8g0386651 | 68.908 | 119 | 35 | 1 | 2 | 120 | 20 | 136 | 2.16e-61 | 184 |
| Msa1170290 | MtrunA17_Chr1g0203211 | 67.500 | 120 | 37 | 1 | 1 | 120 | 43 | 160 | 5.78e-59 | 179 |
| Msa1170290 | MtrunA17_Chr5g0397641 | 67.227 | 119 | 37 | 1 | 2 | 120 | 20 | 136 | 9.69e-59 | 177 |
| Msa1170290 | MtrunA17_Chr7g0261251 | 60.331 | 121 | 48 | 0 | 1 | 121 | 26 | 146 | 3.39e-58 | 176 |
| Msa1170290 | MtrunA17_Chr4g0037251 | 55.000 | 120 | 54 | 0 | 1 | 120 | 23 | 142 | 2.84e-49 | 154 |
| Msa1170290 | MtrunA17_Chr1g0187771 | 58.333 | 120 | 50 | 0 | 2 | 121 | 28 | 147 | 3.11e-47 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170290 | AT3G46010.2 | 79.339 | 121 | 25 | 0 | 1 | 121 | 30 | 150 | 5.76e-73 | 214 |
| Msa1170290 | AT3G46010.1 | 79.339 | 121 | 25 | 0 | 1 | 121 | 19 | 139 | 7.74e-73 | 213 |
| Msa1170290 | AT5G59880.1 | 78.512 | 121 | 26 | 0 | 1 | 121 | 19 | 139 | 1.46e-72 | 213 |
| Msa1170290 | AT5G59890.1 | 79.339 | 121 | 25 | 0 | 1 | 121 | 19 | 139 | 1.16e-70 | 208 |
| Msa1170290 | AT5G59890.3 | 79.339 | 121 | 25 | 0 | 1 | 121 | 12 | 132 | 1.57e-70 | 207 |
| Msa1170290 | AT5G59890.2 | 79.339 | 121 | 25 | 0 | 1 | 121 | 12 | 132 | 1.57e-70 | 207 |
| Msa1170290 | AT3G46000.1 | 75.207 | 121 | 28 | 1 | 1 | 121 | 19 | 137 | 1.06e-64 | 192 |
| Msa1170290 | AT3G46000.3 | 75.207 | 121 | 28 | 1 | 1 | 121 | 12 | 130 | 1.35e-64 | 192 |
| Msa1170290 | AT3G46000.2 | 75.207 | 121 | 28 | 1 | 1 | 121 | 38 | 156 | 1.69e-64 | 193 |
| Msa1170290 | AT4G00680.1 | 68.595 | 121 | 38 | 0 | 1 | 121 | 19 | 139 | 1.08e-62 | 188 |
| Msa1170290 | AT4G00680.2 | 68.595 | 121 | 38 | 0 | 1 | 121 | 29 | 149 | 1.52e-62 | 187 |
| Msa1170290 | AT1G01750.1 | 68.595 | 121 | 38 | 0 | 1 | 121 | 19 | 139 | 2.82e-62 | 187 |
| Msa1170290 | AT1G01750.2 | 68.595 | 121 | 38 | 0 | 1 | 121 | 24 | 144 | 2.97e-62 | 187 |
| Msa1170290 | AT4G25590.1 | 65.833 | 120 | 39 | 1 | 1 | 120 | 19 | 136 | 1.72e-59 | 179 |
| Msa1170290 | AT4G25590.2 | 65.833 | 120 | 39 | 1 | 1 | 120 | 12 | 129 | 2.16e-59 | 179 |
| Msa1170290 | AT5G52360.1 | 66.667 | 120 | 38 | 1 | 1 | 120 | 19 | 136 | 4.23e-59 | 179 |
| Msa1170290 | AT5G59880.2 | 67.769 | 121 | 24 | 1 | 1 | 121 | 19 | 124 | 2.48e-58 | 176 |
| Msa1170290 | AT2G31200.1 | 54.545 | 121 | 55 | 0 | 1 | 121 | 26 | 146 | 1.82e-51 | 159 |
| Msa1170290 | AT4G34970.1 | 53.333 | 120 | 56 | 0 | 1 | 120 | 21 | 140 | 1.16e-47 | 150 |
| Msa1170290 | AT2G16700.1 | 50.833 | 120 | 59 | 0 | 1 | 120 | 23 | 142 | 3.17e-46 | 146 |
| Msa1170290 | AT2G16700.4 | 50.833 | 120 | 59 | 0 | 1 | 120 | 12 | 131 | 4.03e-46 | 145 |
| Msa1170290 | AT2G16700.2 | 50.833 | 120 | 59 | 0 | 1 | 120 | 12 | 131 | 4.03e-46 | 145 |
| Msa1170290 | AT3G45990.1 | 55.118 | 127 | 46 | 3 | 1 | 121 | 12 | 133 | 1.93e-40 | 131 |
| Msa1170290 | AT2G16700.3 | 51.389 | 72 | 35 | 0 | 1 | 72 | 23 | 94 | 6.61e-25 | 91.7 |
Find 90 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACTTTATGCCACAATTT+TGG | 0.126450 | 7_4:+63486951 | None:intergenic |
| TGACTGCAAGTTAAAGTTTA+TGG | 0.155260 | 7_4:-63487545 | Msa1170290:exon |
| TCTGAATAGTATAGGCTTTC+TGG | 0.160656 | 7_4:-63487066 | Msa1170290:three_prime_UTR |
| GTTCATGCAAACTCTGTTTA+TGG | 0.165538 | 7_4:-63486675 | Msa1170290:three_prime_UTR |
| CTCCCTCTTGAACCTTTCTT+TGG | 0.182021 | 7_4:+63487178 | None:intergenic |
| GAAGGTGGTGGAGGAGATAT+AGG | 0.233987 | 7_4:+63488913 | None:intergenic |
| CTTCTCACTCTTGCTGTATC+AGG | 0.259069 | 7_4:+63487221 | None:intergenic |
| TAGGCACAGTTGTCACTAAT+TGG | 0.290153 | 7_4:-63486512 | Msa1170290:three_prime_UTR |
| ATGAGAAATGTGAAGGAAAA+AGG | 0.317369 | 7_4:+63488995 | None:intergenic |
| TTCATGCAAACTCTGTTTAT+GGG | 0.320236 | 7_4:-63486674 | Msa1170290:three_prime_UTR |
| GACTAGTGTCAATATTAAAA+AGG | 0.322442 | 7_4:+63486778 | None:intergenic |
| GTAGTGAGATCTTATTATAT+TGG | 0.349128 | 7_4:-63486645 | Msa1170290:three_prime_UTR |
| AGGCATTATTTCTACTTGAT+AGG | 0.357853 | 7_4:+63486487 | None:intergenic |
| GAGCTTAGTTGTTGGGAGAA+AGG | 0.358954 | 7_4:-63486575 | Msa1170290:three_prime_UTR |
| CATAAAAGAGCTTAGTTGTT+GGG | 0.361793 | 7_4:-63486582 | Msa1170290:three_prime_UTR |
| TGGTCAACTTGACTAGGTTA+TGG | 0.369805 | 7_4:-63486985 | Msa1170290:three_prime_UTR |
| GTTGACCAACCCACAAACTA+TGG | 0.374300 | 7_4:+63487000 | None:intergenic |
| ATTCAGAATCATTATTTAGT+TGG | 0.389131 | 7_4:+63487082 | None:intergenic |
| TGGAATTCAAATAGAGTTGC+AGG | 0.390254 | 7_4:-63487150 | Msa1170290:CDS |
| ATATGACTAACTAAGGCTTA+AGG | 0.390867 | 7_4:+63487031 | None:intergenic |
| TATGACTAACTAAGGCTTAA+GGG | 0.394872 | 7_4:+63487032 | None:intergenic |
| GGCAACTGATCCTACTGAAA+TGG | 0.408996 | 7_4:-63487129 | Msa1170290:CDS |
| AAGTGTATTGCACCTTCAAC+AGG | 0.412349 | 7_4:-63486935 | Msa1170290:three_prime_UTR |
| CATGAGTTAGTTGTGGTTGT+TGG | 0.415836 | 7_4:+63488874 | None:intergenic |
| TTAGTGACAACTGTGCCTAA+TGG | 0.417440 | 7_4:+63486516 | None:intergenic |
| TTATGGAGCTCAAGGCAAAA+AGG | 0.429370 | 7_4:-63487528 | Msa1170290:CDS |
| GTGGTTGTTGGAGAATTGAT+TGG | 0.438944 | 7_4:+63488886 | None:intergenic |
| AAGGTGGTGGAGGAGATATA+GGG | 0.443448 | 7_4:+63488914 | None:intergenic |
| ACAAAACTCAAGCCCGCTAT+GGG | 0.449583 | 7_4:+63486461 | None:intergenic |
| AGTTACAAATTTACCCAGTA+AGG | 0.449583 | 7_4:+63486836 | None:intergenic |
| AACAAAACTCAAGCCCGCTA+TGG | 0.467429 | 7_4:+63486460 | None:intergenic |
| TGTGATGATCAGACAACAAA+TGG | 0.468420 | 7_4:-63486807 | Msa1170290:three_prime_UTR |
| CTACAGGCAAATGCAGCATC+TGG | 0.469337 | 7_4:-63487582 | Msa1170290:intron |
| TGGTTGTTGGAGAATTGATT+GGG | 0.472198 | 7_4:+63488887 | None:intergenic |
| ATGAAATGACTGAAGTCAAA+AGG | 0.475626 | 7_4:+63486744 | None:intergenic |
| ACTTTAACTTGCAGTCATCA+TGG | 0.482180 | 7_4:+63487551 | None:intergenic |
| TTGAGATATCCATAGTTTGT+GGG | 0.483530 | 7_4:-63487009 | Msa1170290:three_prime_UTR |
| TGCATGAACAAGACTACAAA+AGG | 0.484013 | 7_4:+63486689 | None:intergenic |
| ATAATGATTCTGAATAGTAT+AGG | 0.484054 | 7_4:-63487074 | Msa1170290:three_prime_UTR |
| TATCTCAATATGACTAACTA+AGG | 0.495560 | 7_4:+63487024 | None:intergenic |
| ATAATGCCTTTCCCCATAGC+GGG | 0.499641 | 7_4:-63486473 | Msa1170290:three_prime_UTR |
| GCATAAAAGAGCTTAGTTGT+TGG | 0.501561 | 7_4:-63486583 | Msa1170290:three_prime_UTR |
| GTGATTGTTTCTTCGATCGA+GGG | 0.502203 | 7_4:+63488944 | None:intergenic |
| GTTAAAGTTTATGGAGCTCA+AGG | 0.502426 | 7_4:-63487536 | Msa1170290:exon |
| ATTGGGAGCGAAGGTGGTGG+AGG | 0.506638 | 7_4:+63488904 | None:intergenic |
| ATTGAGATATCCATAGTTTG+TGG | 0.507811 | 7_4:-63487010 | Msa1170290:three_prime_UTR |
| CGATCTTATACACTATGAAC+CGG | 0.509573 | 7_4:+63487500 | None:intergenic |
| TTTATGCAAGCACCAAAGAA+AGG | 0.510363 | 7_4:-63487190 | Msa1170290:CDS |
| GAGATCTTATTATATTGGTA+TGG | 0.514317 | 7_4:-63486640 | Msa1170290:three_prime_UTR |
| TAGTATAGGCTTTCTGGTGG+GGG | 0.515785 | 7_4:-63487060 | Msa1170290:three_prime_UTR |
| ATGCAATAAATAAAGTACTC+TGG | 0.518889 | 7_4:+63486602 | None:intergenic |
| GAACAAGAGAAGCCTGTTGA+AGG | 0.524057 | 7_4:+63486923 | None:intergenic |
| TCTTCGATCGAGGGTTCGAT+CGG | 0.525209 | 7_4:+63488953 | None:intergenic |
| AAAGAGAATGAGAAATGTGA+AGG | 0.527881 | 7_4:+63488988 | None:intergenic |
| TTTCTGGTATGGGTATTCAA+AGG | 0.528285 | 7_4:-63486712 | Msa1170290:three_prime_UTR |
| GCATAACGGCACTCATCAGC+AGG | 0.530155 | 7_4:+63487400 | None:intergenic |
| TTGATTGGGAGCGAAGGTGG+TGG | 0.531632 | 7_4:+63488901 | None:intergenic |
| CTCAAGCCCGCTATGGGGAA+AGG | 0.536259 | 7_4:+63486467 | None:intergenic |
| GAATTGATTGGGAGCGAAGG+TGG | 0.538557 | 7_4:+63488898 | None:intergenic |
| TGTGATTGTTTCTTCGATCG+AGG | 0.538984 | 7_4:+63488943 | None:intergenic |
| CAAGTCATTGTGGAAAAGCT+TGG | 0.539988 | 7_4:-63487463 | Msa1170290:CDS |
| ATAGTATAGGCTTTCTGGTG+GGG | 0.545970 | 7_4:-63487061 | Msa1170290:three_prime_UTR |
| GTGGGTTGGTCAACTTGACT+AGG | 0.547849 | 7_4:-63486991 | Msa1170290:three_prime_UTR |
| ATGACTAACTAAGGCTTAAG+GGG | 0.552433 | 7_4:+63487033 | None:intergenic |
| AGAAAGGTTCAAGAGGGAGC+TGG | 0.559858 | 7_4:-63487174 | Msa1170290:CDS |
| GAGTGATCAGTTAATCCATT+AGG | 0.559965 | 7_4:-63486531 | Msa1170290:three_prime_UTR |
| GAAACAGAAGCAAGTCATTG+TGG | 0.565595 | 7_4:-63487473 | Msa1170290:CDS |
| GATATCCATAGTTTGTGGGT+TGG | 0.569687 | 7_4:-63487005 | Msa1170290:three_prime_UTR |
| GAATAGTATAGGCTTTCTGG+TGG | 0.570109 | 7_4:-63487063 | Msa1170290:three_prime_UTR |
| GAATCATTATTTAGTTGGCA+CGG | 0.570158 | 7_4:+63487087 | None:intergenic |
| AATAGTATAGGCTTTCTGGT+GGG | 0.571857 | 7_4:-63487062 | Msa1170290:three_prime_UTR |
| GCACCAAAGAAAGGTTCAAG+AGG | 0.572284 | 7_4:-63487181 | Msa1170290:CDS |
| GTGATGATCAGACAACAAAT+GGG | 0.575364 | 7_4:-63486806 | Msa1170290:three_prime_UTR |
| GTGGAGGAGATATAGGGAGA+AGG | 0.577732 | 7_4:+63488920 | None:intergenic |
| AATAATGCCTTTCCCCATAG+CGG | 0.577755 | 7_4:-63486474 | Msa1170290:three_prime_UTR |
| AACGAACCATGAGTTAGTTG+TGG | 0.578683 | 7_4:+63488867 | None:intergenic |
| AGGCAAATGCAGCATCTGGT+TGG | 0.591108 | 7_4:-63487578 | Msa1170290:five_prime_UTR |
| CAACAACCACAACTAACTCA+TGG | 0.597526 | 7_4:-63488873 | Msa1170290:intron |
| AGGTTCAAGAGGGAGCTGGA+TGG | 0.608161 | 7_4:-63487170 | Msa1170290:CDS |
| ACATCAAGATCCATTTCAGT+AGG | 0.609483 | 7_4:+63487119 | None:intergenic |
| AAGCTTGGTGAGCCAGCTGA+AGG | 0.610538 | 7_4:-63487448 | Msa1170290:CDS |
| GGAGAATTGATTGGGAGCGA+AGG | 0.611158 | 7_4:+63488895 | None:intergenic |
| CAAAATCATAGACAGCATAA+CGG | 0.612434 | 7_4:+63487386 | None:intergenic |
| CACCAAAGAAAGGTTCAAGA+GGG | 0.636143 | 7_4:-63487180 | Msa1170290:CDS |
| AACGGCACTCATCAGCAGGA+AGG | 0.636804 | 7_4:+63487404 | None:intergenic |
| GTTCATAGTGTATAAGATCG+AGG | 0.648241 | 7_4:-63487497 | Msa1170290:CDS |
| CAAATCATAACAAAATACAC+AGG | 0.664873 | 7_4:+63486901 | None:intergenic |
| CAAAACTCAAGCCCGCTATG+GGG | 0.686846 | 7_4:+63486462 | None:intergenic |
| CAGTGTCTTATAGATATCTG+CGG | 0.687546 | 7_4:+63489035 | None:intergenic |
| TGATGATCAGACAACAAATG+GGG | 0.760183 | 7_4:-63486805 | Msa1170290:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTAAATTAAAAAAAA+AGG | + | chr7_4:63486694-63486713 | None:intergenic | 0.0% |
| !! | CAAATTAATCGTATAATAAT+TGG | - | chr7_4:63486896-63486915 | Msa1170290:three_prime_UTR | 15.0% |
| !!! | TTTTTGTAGTAGTTAATTAT+TGG | - | chr7_4:63487060-63487079 | Msa1170290:three_prime_UTR | 15.0% |
| !! | ATAAAGAGTAAATTAATACA+TGG | + | chr7_4:63487351-63487370 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTTTTGTTTTTC+TGG | - | chr7_4:63488744-63488763 | Msa1170290:intron | 15.0% |
| !! | ATAATAATTGGATGATTTAG+TGG | - | chr7_4:63486908-63486927 | Msa1170290:three_prime_UTR | 20.0% |
| !!! | CTAAAAATTTTGTATCACAT+TGG | + | chr7_4:63487483-63487502 | None:intergenic | 20.0% |
| !!! | CAATGTGATACAAAATTTTT+AGG | - | chr7_4:63487481-63487500 | Msa1170290:CDS | 20.0% |
| !! | TTATCTGTATGAATTGAATT+TGG | - | chr7_4:63487515-63487534 | Msa1170290:CDS | 20.0% |
| !!! | TTTGAAGTAAGAAATGTAAA+TGG | - | chr7_4:63487661-63487680 | Msa1170290:intron | 20.0% |
| !!! | ATGAAAAAAATTCTGCTTTT+GGG | + | chr7_4:63488135-63488154 | None:intergenic | 20.0% |
| !!! | AATGAAAAAAATTCTGCTTT+TGG | + | chr7_4:63488136-63488155 | None:intergenic | 20.0% |
| !!! | AAAAGCAGAATTTTTTTCAT+TGG | - | chr7_4:63488135-63488154 | Msa1170290:intron | 20.0% |
| !!! | AAAGCAGAATTTTTTTCATT+GGG | - | chr7_4:63488136-63488155 | Msa1170290:intron | 20.0% |
| !! | ATTCAGAATCATTATTTAGT+TGG | + | chr7_4:63488393-63488412 | None:intergenic | 20.0% |
| !! | ATAATGATTCTGAATAGTAT+AGG | - | chr7_4:63488398-63488417 | Msa1170290:intron | 20.0% |
| !!! | ATTTTTTTGTTTTTCTGGTA+TGG | - | chr7_4:63488749-63488768 | Msa1170290:intron | 20.0% |
| !!! | TTTTTTTGTTTTTCTGGTAT+GGG | - | chr7_4:63488750-63488769 | Msa1170290:intron | 20.0% |
| ! | AAAAAAAAAGGCAAAATTCG+CGG | + | chr7_4:63486682-63486701 | None:intergenic | 25.0% |
| !! | TTGTCTATATTCCATTGATT+TGG | - | chr7_4:63487252-63487271 | Msa1170290:intron | 25.0% |
| ! | TATACAAATCTTCGAATAGA+AGG | + | chr7_4:63487457-63487476 | None:intergenic | 25.0% |
| ! | ATGAATTGAATTTGGTATGT+AGG | - | chr7_4:63487523-63487542 | Msa1170290:CDS | 25.0% |
| ! | TCTGTAGAAACTTGAAAAAT+AGG | - | chr7_4:63487601-63487620 | Msa1170290:intron | 25.0% |
| ! | TAGGAAATCATGTGAAAATA+AGG | - | chr7_4:63487620-63487639 | Msa1170290:intron | 25.0% |
| !!! | TGAAAAAAATTCTGCTTTTG+GGG | + | chr7_4:63488134-63488153 | None:intergenic | 25.0% |
| ! | TATCTCAATATGACTAACTA+AGG | + | chr7_4:63488451-63488470 | None:intergenic | 25.0% |
| !! | TCTCAAATTTTCCAAAATTG+TGG | - | chr7_4:63488510-63488529 | Msa1170290:intron | 25.0% |
| ! | CAAATCATAACAAAATACAC+AGG | + | chr7_4:63488574-63488593 | None:intergenic | 25.0% |
| !!! | CATTTTAGTATATCCTTACT+GGG | - | chr7_4:63488623-63488642 | Msa1170290:intron | 25.0% |
| ! | GACTAGTGTCAATATTAAAA+AGG | + | chr7_4:63488697-63488716 | None:intergenic | 25.0% |
| ! | GTAGTGAGATCTTATTATAT+TGG | - | chr7_4:63488827-63488846 | Msa1170290:intron | 25.0% |
| ! | GAGATCTTATTATATTGGTA+TGG | - | chr7_4:63488832-63488851 | Msa1170290:intron | 25.0% |
| !! | ATGCAATAAATAAAGTACTC+TGG | + | chr7_4:63488873-63488892 | None:intergenic | 25.0% |
| ATGAGAAATGTGAAGGAAAA+AGG | + | chr7_4:63486480-63486499 | None:intergenic | 30.0% | |
| AAAGAGAATGAGAAATGTGA+AGG | + | chr7_4:63486487-63486506 | None:intergenic | 30.0% | |
| ! | GTCGATTTCATTGTTTGAAT+TGG | - | chr7_4:63486865-63486884 | Msa1170290:three_prime_UTR | 30.0% |
| AGACGCATCTAAACATAAAT+TGG | - | chr7_4:63487186-63487205 | Msa1170290:CDS | 30.0% | |
| !! | CTATATTCCATTGATTTGGA+CGG | - | chr7_4:63487256-63487275 | Msa1170290:intron | 30.0% |
| !! | GGTGTCAATTTTTCAATCAA+AGG | + | chr7_4:63487436-63487455 | None:intergenic | 30.0% |
| GAAATCATGTGAAAATAAGG+TGG | - | chr7_4:63487623-63487642 | Msa1170290:intron | 30.0% | |
| TGACTGCAAGTTAAAGTTTA+TGG | - | chr7_4:63487927-63487946 | Msa1170290:intron | 30.0% | |
| CAAAATCATAGACAGCATAA+CGG | + | chr7_4:63488089-63488108 | None:intergenic | 30.0% | |
| !! | AATGTTTGCTTTTCGATACA+TGG | - | chr7_4:63488163-63488182 | Msa1170290:intron | 30.0% |
| GAATCATTATTTAGTTGGCA+CGG | + | chr7_4:63488388-63488407 | None:intergenic | 30.0% | |
| TATGACTAACTAAGGCTTAA+GGG | + | chr7_4:63488443-63488462 | None:intergenic | 30.0% | |
| ATATGACTAACTAAGGCTTA+AGG | + | chr7_4:63488444-63488463 | None:intergenic | 30.0% | |
| ATTGAGATATCCATAGTTTG+TGG | - | chr7_4:63488462-63488481 | Msa1170290:intron | 30.0% | |
| ! | TTGAGATATCCATAGTTTGT+GGG | - | chr7_4:63488463-63488482 | Msa1170290:intron | 30.0% |
| ! | TACACTTTATGCCACAATTT+TGG | + | chr7_4:63488524-63488543 | None:intergenic | 30.0% |
| ! | ATACAATCTTTTCGTTTGAG+TGG | - | chr7_4:63488600-63488619 | Msa1170290:intron | 30.0% |
| !! | GCATTTTAGTATATCCTTAC+TGG | - | chr7_4:63488622-63488641 | Msa1170290:intron | 30.0% |
| AGTTACAAATTTACCCAGTA+AGG | + | chr7_4:63488639-63488658 | None:intergenic | 30.0% | |
| ATGAAATGACTGAAGTCAAA+AGG | + | chr7_4:63488731-63488750 | None:intergenic | 30.0% | |
| TTCATGCAAACTCTGTTTAT+GGG | - | chr7_4:63488798-63488817 | Msa1170290:intron | 30.0% | |
| CATAAAAGAGCTTAGTTGTT+GGG | - | chr7_4:63488890-63488909 | Msa1170290:five_prime_UTR | 30.0% | |
| !! | AGGCATTATTTCTACTTGAT+AGG | + | chr7_4:63488988-63489007 | None:intergenic | 30.0% |
| !!! | TGAGTTTTGTTGAAGTAATC+AGG | - | chr7_4:63489024-63489043 | Msa1170290:five_prime_UTR | 30.0% |
| !!! | GAGTTTTGTTGAAGTAATCA+GGG | - | chr7_4:63489025-63489044 | Msa1170290:five_prime_UTR | 30.0% |
| CAGTGTCTTATAGATATCTG+CGG | + | chr7_4:63486440-63486459 | None:intergenic | 35.0% | |
| TGGTTGTTGGAGAATTGATT+GGG | + | chr7_4:63486588-63486607 | None:intergenic | 35.0% | |
| AACCGTTCAATTCTTACACA+TGG | - | chr7_4:63486646-63486665 | Msa1170290:three_prime_UTR | 35.0% | |
| AGCCATGTGTAAGAATTGAA+CGG | + | chr7_4:63486651-63486670 | None:intergenic | 35.0% | |
| AGATCATGAAAATTCCAGCT+CGG | + | chr7_4:63486776-63486795 | None:intergenic | 35.0% | |
| !! | ATTTTGTTTGGGTAAGCTTG+TGG | - | chr7_4:63487026-63487045 | Msa1170290:three_prime_UTR | 35.0% |
| AGGATAACTCACTTTGTTAG+CGG | - | chr7_4:63487294-63487313 | Msa1170290:intron | 35.0% | |
| CAAGTTTCTACAGACCAAAA+GGG | + | chr7_4:63487595-63487614 | None:intergenic | 35.0% | |
| TCAAGTTTCTACAGACCAAA+AGG | + | chr7_4:63487596-63487615 | None:intergenic | 35.0% | |
| GTTTCTAACTGCAATTCTAC+AGG | - | chr7_4:63487874-63487893 | Msa1170290:intron | 35.0% | |
| !! | ACTTTAACTTGCAGTCATCA+TGG | + | chr7_4:63487924-63487943 | None:intergenic | 35.0% |
| GTTAAAGTTTATGGAGCTCA+AGG | - | chr7_4:63487936-63487955 | Msa1170290:intron | 35.0% | |
| CGATCTTATACACTATGAAC+CGG | + | chr7_4:63487975-63487994 | None:intergenic | 35.0% | |
| GTTCATAGTGTATAAGATCG+AGG | - | chr7_4:63487975-63487994 | Msa1170290:intron | 35.0% | |
| ! | AAATTTTCATAGCCTTCAGC+TGG | + | chr7_4:63488039-63488058 | None:intergenic | 35.0% |
| !!! | GCAGAATTTTTTTCATTGGG+TGG | - | chr7_4:63488139-63488158 | Msa1170290:intron | 35.0% |
| ! | TACATGGCTATAGTTTTCCT+TGG | - | chr7_4:63488179-63488198 | Msa1170290:intron | 35.0% |
| AGATAGGAAGTAAACAACCA+AGG | + | chr7_4:63488199-63488218 | None:intergenic | 35.0% | |
| CCAACAGAATTAATGCAGAT+AGG | + | chr7_4:63488215-63488234 | None:intergenic | 35.0% | |
| CCTATCTGCATTAATTCTGT+TGG | - | chr7_4:63488212-63488231 | Msa1170290:intron | 35.0% | |
| TTTATGCAAGCACCAAAGAA+AGG | - | chr7_4:63488282-63488301 | Msa1170290:intron | 35.0% | |
| TGGAATTCAAATAGAGTTGC+AGG | - | chr7_4:63488322-63488341 | Msa1170290:intron | 35.0% | |
| ACATCAAGATCCATTTCAGT+AGG | + | chr7_4:63488356-63488375 | None:intergenic | 35.0% | |
| TCTGAATAGTATAGGCTTTC+TGG | - | chr7_4:63488406-63488425 | Msa1170290:intron | 35.0% | |
| ! | AATAGTATAGGCTTTCTGGT+GGG | - | chr7_4:63488410-63488429 | Msa1170290:intron | 35.0% |
| ATGACTAACTAAGGCTTAAG+GGG | + | chr7_4:63488442-63488461 | None:intergenic | 35.0% | |
| TGTGATGATCAGACAACAAA+TGG | - | chr7_4:63488665-63488684 | Msa1170290:intron | 35.0% | |
| GTGATGATCAGACAACAAAT+GGG | - | chr7_4:63488666-63488685 | Msa1170290:intron | 35.0% | |
| TGATGATCAGACAACAAATG+GGG | - | chr7_4:63488667-63488686 | Msa1170290:intron | 35.0% | |
| ! | TTTCTGGTATGGGTATTCAA+AGG | - | chr7_4:63488760-63488779 | Msa1170290:intron | 35.0% |
| TGCATGAACAAGACTACAAA+AGG | + | chr7_4:63488786-63488805 | None:intergenic | 35.0% | |
| GTTCATGCAAACTCTGTTTA+TGG | - | chr7_4:63488797-63488816 | Msa1170290:intron | 35.0% | |
| GCATAAAAGAGCTTAGTTGT+TGG | - | chr7_4:63488889-63488908 | Msa1170290:five_prime_UTR | 35.0% | |
| GAGTGATCAGTTAATCCATT+AGG | - | chr7_4:63488941-63488960 | Msa1170290:five_prime_UTR | 35.0% | |
| ! | ATGTGAAGGAAAAAGGTGTG+TGG | + | chr7_4:63486473-63486492 | None:intergenic | 40.0% |
| ! | GTGATTGTTTCTTCGATCGA+GGG | + | chr7_4:63486531-63486550 | None:intergenic | 40.0% |
| ! | TGTGATTGTTTCTTCGATCG+AGG | + | chr7_4:63486532-63486551 | None:intergenic | 40.0% |
| GTGGTTGTTGGAGAATTGAT+TGG | + | chr7_4:63486589-63486608 | None:intergenic | 40.0% | |
| CATGAGTTAGTTGTGGTTGT+TGG | + | chr7_4:63486601-63486620 | None:intergenic | 40.0% | |
| CAACAACCACAACTAACTCA+TGG | - | chr7_4:63486599-63486618 | Msa1170290:three_prime_UTR | 40.0% | |
| AACGAACCATGAGTTAGTTG+TGG | + | chr7_4:63486608-63486627 | None:intergenic | 40.0% | |
| CAAAAAGAGCTGAAATCGAG+AGG | + | chr7_4:63486737-63486756 | None:intergenic | 40.0% | |
| CTTGTGAATTGTGATCTGTG+TGG | - | chr7_4:63486955-63486974 | Msa1170290:three_prime_UTR | 40.0% | |
| CATAGTACCGTCCAAATCAA+TGG | + | chr7_4:63487266-63487285 | None:intergenic | 40.0% | |
| GACGGTACTATGCTTGTATA+AGG | - | chr7_4:63487274-63487293 | Msa1170290:intron | 40.0% | |
| GGATAACTCACTTTGTTAGC+GGG | - | chr7_4:63487295-63487314 | Msa1170290:intron | 40.0% | |
| TTATGGAGCTCAAGGCAAAA+AGG | - | chr7_4:63487944-63487963 | Msa1170290:intron | 40.0% | |
| GAAACAGAAGCAAGTCATTG+TGG | - | chr7_4:63487999-63488018 | Msa1170290:intron | 40.0% | |
| CAAGTCATTGTGGAAAAGCT+TGG | - | chr7_4:63488009-63488028 | Msa1170290:intron | 40.0% | |
| !! | ATTCTGTTGGCTTTGTGTGT+AGG | - | chr7_4:63488225-63488244 | Msa1170290:intron | 40.0% |
| CACCAAAGAAAGGTTCAAGA+GGG | - | chr7_4:63488292-63488311 | Msa1170290:intron | 40.0% | |
| GAATAGTATAGGCTTTCTGG+TGG | - | chr7_4:63488409-63488428 | Msa1170290:intron | 40.0% | |
| ! | ATAGTATAGGCTTTCTGGTG+GGG | - | chr7_4:63488411-63488430 | Msa1170290:intron | 40.0% |
| ! | GATATCCATAGTTTGTGGGT+TGG | - | chr7_4:63488467-63488486 | Msa1170290:intron | 40.0% |
| TGGTCAACTTGACTAGGTTA+TGG | - | chr7_4:63488487-63488506 | Msa1170290:intron | 40.0% | |
| AAGTGTATTGCACCTTCAAC+AGG | - | chr7_4:63488537-63488556 | Msa1170290:intron | 40.0% | |
| TTAGTGACAACTGTGCCTAA+TGG | + | chr7_4:63488959-63488978 | None:intergenic | 40.0% | |
| TAGGCACAGTTGTCACTAAT+TGG | - | chr7_4:63488960-63488979 | Msa1170290:five_prime_UTR | 40.0% | |
| AATAATGCCTTTCCCCATAG+CGG | - | chr7_4:63488998-63489017 | Msa1170290:five_prime_UTR | 40.0% | |
| ! | TGAAGGAAAAAGGTGTGTGG+TGG | + | chr7_4:63486470-63486489 | None:intergenic | 45.0% |
| !! | AAGGTGGTGGAGGAGATATA+GGG | + | chr7_4:63486561-63486580 | None:intergenic | 45.0% |
| GACTATAGTACAATCCGAGC+TGG | - | chr7_4:63486759-63486778 | Msa1170290:three_prime_UTR | 45.0% | |
| TCTACAGACCAAAAGGGTCT+AGG | + | chr7_4:63487589-63487608 | None:intergenic | 45.0% | |
| TCATGTGATTGCTGATCTGC+TGG | - | chr7_4:63487822-63487841 | Msa1170290:intron | 45.0% | |
| TCAAGGCAAAAAGGACACAC+CGG | - | chr7_4:63487953-63487972 | Msa1170290:intron | 45.0% | |
| ! | CTTCTCACTCTTGCTGTATC+AGG | + | chr7_4:63488254-63488273 | None:intergenic | 45.0% |
| GCACCAAAGAAAGGTTCAAG+AGG | - | chr7_4:63488291-63488310 | Msa1170290:intron | 45.0% | |
| CTCCCTCTTGAACCTTTCTT+TGG | + | chr7_4:63488297-63488316 | None:intergenic | 45.0% | |
| GGCAACTGATCCTACTGAAA+TGG | - | chr7_4:63488343-63488362 | Msa1170290:intron | 45.0% | |
| ! | TAGTATAGGCTTTCTGGTGG+GGG | - | chr7_4:63488412-63488431 | Msa1170290:intron | 45.0% |
| GTTGACCAACCCACAAACTA+TGG | + | chr7_4:63488475-63488494 | None:intergenic | 45.0% | |
| GAACAAGAGAAGCCTGTTGA+AGG | + | chr7_4:63488552-63488571 | None:intergenic | 45.0% | |
| GAGCTTAGTTGTTGGGAGAA+AGG | - | chr7_4:63488897-63488916 | Msa1170290:five_prime_UTR | 45.0% | |
| ATAATGCCTTTCCCCATAGC+GGG | - | chr7_4:63488999-63489018 | Msa1170290:five_prime_UTR | 45.0% | |
| ACAAAACTCAAGCCCGCTAT+GGG | + | chr7_4:63489014-63489033 | None:intergenic | 45.0% | |
| AACAAAACTCAAGCCCGCTA+TGG | + | chr7_4:63489015-63489034 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTATTATTTTGTT+TGG | - | chr7_4:63487014-63487033 | Msa1170290:three_prime_UTR | 5.0% |
| !!! | TTATTTTTATTATTTTGTTT+GGG | - | chr7_4:63487015-63487034 | Msa1170290:three_prime_UTR | 5.0% |
| TCTTCGATCGAGGGTTCGAT+CGG | + | chr7_4:63486522-63486541 | None:intergenic | 50.0% | |
| GTGGAGGAGATATAGGGAGA+AGG | + | chr7_4:63486555-63486574 | None:intergenic | 50.0% | |
| !! | GAAGGTGGTGGAGGAGATAT+AGG | + | chr7_4:63486562-63486581 | None:intergenic | 50.0% |
| GAATTGATTGGGAGCGAAGG+TGG | + | chr7_4:63486577-63486596 | None:intergenic | 50.0% | |
| GGAGAATTGATTGGGAGCGA+AGG | + | chr7_4:63486580-63486599 | None:intergenic | 50.0% | |
| CTACAGGCAAATGCAGCATC+TGG | - | chr7_4:63487890-63487909 | Msa1170290:intron | 50.0% | |
| AGGCAAATGCAGCATCTGGT+TGG | - | chr7_4:63487894-63487913 | Msa1170290:intron | 50.0% | |
| AGAAAGGTTCAAGAGGGAGC+TGG | - | chr7_4:63488298-63488317 | Msa1170290:intron | 50.0% | |
| !! | GTGGGTTGGTCAACTTGACT+AGG | - | chr7_4:63488481-63488500 | Msa1170290:intron | 50.0% |
| CAAAACTCAAGCCCGCTATG+GGG | + | chr7_4:63489013-63489032 | None:intergenic | 50.0% | |
| TTGATTGGGAGCGAAGGTGG+TGG | + | chr7_4:63486574-63486593 | None:intergenic | 55.0% | |
| AGGGTCTAGGCGCAAGTCAT+TGG | + | chr7_4:63487576-63487595 | None:intergenic | 55.0% | |
| ! | GACTTGCGCCTAGACCCTTT+TGG | - | chr7_4:63487578-63487597 | Msa1170290:five_prime_UTR | 55.0% |
| ! | AAGCTTGGTGAGCCAGCTGA+AGG | - | chr7_4:63488024-63488043 | Msa1170290:intron | 55.0% |
| AACGGCACTCATCAGCAGGA+AGG | + | chr7_4:63488071-63488090 | None:intergenic | 55.0% | |
| GCATAACGGCACTCATCAGC+AGG | + | chr7_4:63488075-63488094 | None:intergenic | 55.0% | |
| AGGTTCAAGAGGGAGCTGGA+TGG | - | chr7_4:63488302-63488321 | Msa1170290:intron | 55.0% | |
| ! | ATTGGGAGCGAAGGTGGTGG+AGG | + | chr7_4:63486571-63486590 | None:intergenic | 60.0% |
| CTCAAGCCCGCTATGGGGAA+AGG | + | chr7_4:63489008-63489027 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 63486425 | 63489069 | 63486425 | ID=Msa1170290;Name=Msa1170290 |
| chr7_4 | mRNA | 63486425 | 63489069 | 63486425 | ID=Msa1170290-mRNA-1;Parent=Msa1170290;Name=Msa1170290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=246|1|1|1|0.5|0.66|3|672|121 |
| chr7_4 | exon | 63486425 | 63487247 | 63486425 | ID=Msa1170290-mRNA-1:exon:20331;Parent=Msa1170290-mRNA-1 |
| chr7_4 | exon | 63487334 | 63487598 | 63487334 | ID=Msa1170290-mRNA-1:exon:20330;Parent=Msa1170290-mRNA-1 |
| chr7_4 | exon | 63488874 | 63489069 | 63488874 | ID=Msa1170290-mRNA-1:exon:20329;Parent=Msa1170290-mRNA-1 |
| chr7_4 | five_prime_UTR | 63488874 | 63489069 | 63488874 | ID=Msa1170290-mRNA-1:five_prime_utr;Parent=Msa1170290-mRNA-1 |
| chr7_4 | five_prime_UTR | 63487549 | 63487598 | 63487549 | ID=Msa1170290-mRNA-1:five_prime_utr;Parent=Msa1170290-mRNA-1 |
| chr7_4 | CDS | 63487334 | 63487548 | 63487334 | ID=Msa1170290-mRNA-1:cds;Parent=Msa1170290-mRNA-1 |
| chr7_4 | CDS | 63487097 | 63487247 | 63487097 | ID=Msa1170290-mRNA-1:cds;Parent=Msa1170290-mRNA-1 |
| chr7_4 | three_prime_UTR | 63486425 | 63487096 | 63486425 | ID=Msa1170290-mRNA-1:three_prime_utr;Parent=Msa1170290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
