Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170550 | XP_013449881.1 | 97.082 | 377 | 11 | 0 | 1 | 377 | 4 | 380 | 0.0 | 762 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170550 | sp|Q1PEZ8|FB117_ARATH | 28.571 | 350 | 220 | 10 | 12 | 357 | 7 | 330 | 5.65e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170550 | A0A072U2J1 | 97.082 | 377 | 11 | 0 | 1 | 377 | 4 | 380 | 0.0 | 762 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1163540 | Msa1170550 | 0.800944 | 1.136440e-48 | -8.615850e-47 |
| Msa1163740 | Msa1170550 | 0.881812 | 1.758679e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170550 | MtrunA17_Chr7g0261121 | 97.082 | 377 | 11 | 0 | 1 | 377 | 4 | 380 | 0.0 | 762 |
| Msa1170550 | MtrunA17_Chr8g0378641 | 52.073 | 386 | 161 | 9 | 4 | 377 | 9 | 382 | 1.12e-123 | 363 |
| Msa1170550 | MtrunA17_Chr4g0047461 | 68.966 | 261 | 73 | 1 | 118 | 378 | 2 | 254 | 3.64e-120 | 349 |
| Msa1170550 | MtrunA17_Chr6g0488491 | 42.781 | 374 | 173 | 13 | 13 | 378 | 11 | 351 | 5.08e-70 | 225 |
| Msa1170550 | MtrunA17_Chr5g0435201 | 41.005 | 378 | 190 | 12 | 3 | 375 | 1 | 350 | 5.62e-67 | 217 |
| Msa1170550 | MtrunA17_Chr8g0371031 | 35.544 | 377 | 194 | 15 | 3 | 356 | 20 | 370 | 2.38e-49 | 172 |
| Msa1170550 | MtrunA17_Chr2g0300541 | 35.772 | 369 | 182 | 12 | 12 | 356 | 28 | 365 | 6.78e-46 | 162 |
| Msa1170550 | MtrunA17_Chr8g0371101 | 32.440 | 373 | 194 | 11 | 12 | 356 | 8 | 350 | 6.25e-45 | 159 |
| Msa1170550 | MtrunA17_Chr7g0261161 | 69.474 | 95 | 27 | 2 | 225 | 318 | 1 | 94 | 3.01e-35 | 127 |
| Msa1170550 | MtrunA17_Chr3g0088641 | 23.229 | 353 | 209 | 12 | 12 | 345 | 6 | 315 | 1.31e-13 | 71.6 |
| Msa1170550 | MtrunA17_Chr6g0457541 | 22.778 | 360 | 204 | 13 | 12 | 343 | 7 | 320 | 3.86e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170550 | AT2G26160.1 | 28.571 | 350 | 220 | 10 | 12 | 357 | 7 | 330 | 5.74e-33 | 127 |
| Msa1170550 | AT1G65770.1 | 28.302 | 371 | 197 | 11 | 12 | 356 | 5 | 332 | 6.26e-33 | 127 |
| Msa1170550 | AT1G44080.1 | 29.545 | 352 | 200 | 9 | 12 | 356 | 7 | 317 | 2.92e-30 | 120 |
| Msa1170550 | AT4G35733.1 | 27.324 | 355 | 219 | 8 | 12 | 356 | 8 | 333 | 6.85e-27 | 110 |
| Msa1170550 | AT3G25750.1 | 27.933 | 358 | 199 | 13 | 12 | 357 | 7 | 317 | 1.08e-23 | 101 |
| Msa1170550 | AT3G25750.2 | 26.870 | 361 | 213 | 12 | 12 | 357 | 7 | 331 | 9.90e-23 | 99.0 |
| Msa1170550 | AT1G65760.1 | 26.146 | 371 | 195 | 12 | 6 | 345 | 1 | 323 | 1.11e-20 | 93.2 |
| Msa1170550 | AT1G65740.1 | 24.731 | 372 | 221 | 11 | 12 | 356 | 5 | 344 | 7.24e-20 | 90.9 |
| Msa1170550 | AT2G17030.1 | 24.590 | 366 | 216 | 12 | 12 | 345 | 5 | 342 | 1.16e-19 | 90.9 |
| Msa1170550 | AT2G17036.2 | 25.501 | 349 | 206 | 15 | 12 | 334 | 4 | 324 | 1.60e-13 | 72.0 |
| Msa1170550 | AT2G17036.1 | 25.501 | 349 | 206 | 15 | 12 | 334 | 5 | 325 | 1.91e-13 | 72.0 |
| Msa1170550 | AT5G60060.1 | 26.136 | 352 | 207 | 17 | 1 | 330 | 1 | 321 | 4.92e-12 | 67.4 |
Find 66 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAACCTGCTGACAAATTT+TGG | 0.080030 | 7_4:+63817600 | Msa1170550:CDS |
| ACTTTATGTTGTGGATAAAA+TGG | 0.170692 | 7_4:+63817172 | Msa1170550:CDS |
| GAGTTGACTGTTTCCAATAT+TGG | 0.239268 | 7_4:+63817071 | Msa1170550:CDS |
| GTGCTGAAAATAGGCATATA+AGG | 0.260640 | 7_4:+63817264 | Msa1170550:CDS |
| TCCGTAGTGTTTGTAGATTT+TGG | 0.264838 | 7_4:+63816622 | Msa1170550:CDS |
| AGTCATCATGAAGATAAAAT+TGG | 0.275568 | 7_4:+63816939 | Msa1170550:CDS |
| TGTACCATTGTGCTGAAAAT+AGG | 0.283196 | 7_4:+63817255 | Msa1170550:CDS |
| GAGATCAAAGAGATAAAGTT+TGG | 0.285701 | 7_4:-63816820 | None:intergenic |
| TGGTTCAATGCGGTATATTT+TGG | 0.305635 | 7_4:-63816718 | None:intergenic |
| GGGTGAGGTTTCGTTTGTTT+TGG | 0.311852 | 7_4:+63817463 | Msa1170550:CDS |
| AAAGGAAAATATCATGTTAA+AGG | 0.318603 | 7_4:+63817097 | Msa1170550:CDS |
| TTGATCAAGAATGGGGTAAA+TGG | 0.326226 | 7_4:+63817423 | Msa1170550:CDS |
| ATGGTTAGAAGTAAAAGATT+TGG | 0.332561 | 7_4:+63817442 | Msa1170550:CDS |
| CAAATCTTCTTGAAGATTTG+TGG | 0.347804 | 7_4:+63816553 | Msa1170550:CDS |
| TGGTTAGAAGTAAAAGATTT+GGG | 0.374795 | 7_4:+63817443 | Msa1170550:CDS |
| CAATGCTCTTTCCTTGAAGT+TGG | 0.381115 | 7_4:+63817211 | Msa1170550:CDS |
| CAAAAGGGGTTACTTCTTGA+AGG | 0.384442 | 7_4:+63817376 | Msa1170550:CDS |
| TTGTGAGAGGCAGGTGGAGG+AGG | 0.384893 | 7_4:-63816657 | None:intergenic |
| AAATCTTCTTGAAGATTTGT+GGG | 0.389413 | 7_4:+63816554 | Msa1170550:CDS |
| TTTATAAGCTTGATCAAGAA+TGG | 0.392244 | 7_4:+63817414 | Msa1170550:CDS |
| CTTTATGTTGTGGATAAAAT+GGG | 0.396836 | 7_4:+63817173 | Msa1170550:CDS |
| TCAACTTCTTGTTCTAATCA+AGG | 0.402165 | 7_4:+63816762 | Msa1170550:CDS |
| ATGATGAAAGGTATTACAAA+AGG | 0.404208 | 7_4:+63817360 | Msa1170550:CDS |
| TGTGATGGATGACAGGTATC+TGG | 0.404685 | 7_4:+63819647 | Msa1170550:intron |
| CCAATCCAAAATTTGTCAGC+AGG | 0.420447 | 7_4:-63817605 | None:intergenic |
| GTAATCTTGTTTCCTGTTGA+GGG | 0.424181 | 7_4:+63819722 | Msa1170550:CDS |
| TGATGAAAGGTATTACAAAA+GGG | 0.432135 | 7_4:+63817361 | Msa1170550:CDS |
| TGAAAATTGAACCAACTTCA+AGG | 0.432491 | 7_4:-63817222 | None:intergenic |
| TTGTTGGCTCGAGATTACTA+TGG | 0.437431 | 7_4:+63817506 | Msa1170550:CDS |
| TGTTTCCAATATTGGAGAAA+AGG | 0.445230 | 7_4:+63817079 | Msa1170550:CDS |
| TTATAAGCTTGATCAAGAAT+GGG | 0.450966 | 7_4:+63817415 | Msa1170550:CDS |
| ACCATGCGACGACCCTCAAC+AGG | 0.457909 | 7_4:-63819734 | None:intergenic |
| AGTAATCTTGTTTCCTGTTG+AGG | 0.464240 | 7_4:+63819721 | Msa1170550:CDS |
| TTCTATTGAGGGTCGTTGCA+TGG | 0.467549 | 7_4:+63817025 | Msa1170550:CDS |
| TGATGATATAATACATTACA+AGG | 0.467606 | 7_4:+63817145 | Msa1170550:CDS |
| TCCTGTTGAGGGTCGTCGCA+TGG | 0.473404 | 7_4:+63819733 | Msa1170550:CDS |
| TCTACTTCTATTATGAAAGC+AGG | 0.486961 | 7_4:+63817546 | Msa1170550:CDS |
| TGCTGAAAATAGGCATATAA+GGG | 0.494278 | 7_4:+63817265 | Msa1170550:CDS |
| ATCACTGGATGGAACAAAGT+TGG | 0.510777 | 7_4:-63817629 | None:intergenic |
| TGATTAGAACAAGAAGTTGA+AGG | 0.514698 | 7_4:-63816759 | None:intergenic |
| ATCAAAGAGATAAAGTTTGG+AGG | 0.516104 | 7_4:-63816817 | None:intergenic |
| GATTAGAACAAGAAGTTGAA+GGG | 0.519595 | 7_4:-63816758 | None:intergenic |
| ATTTATATATTAATGATGAA+AGG | 0.523166 | 7_4:+63817348 | Msa1170550:CDS |
| CAAGGGACAACTTTATGTTG+TGG | 0.530035 | 7_4:+63817163 | Msa1170550:CDS |
| ATGCAAAGGTTGTGAGAGGC+AGG | 0.537372 | 7_4:-63816666 | None:intergenic |
| AAGCAATTAGTAGAGTATGA+TGG | 0.538440 | 7_4:+63817308 | Msa1170550:CDS |
| TGTTGGCTCGAGATTACTAT+GGG | 0.552161 | 7_4:+63817507 | Msa1170550:CDS |
| AGGTTGTGAGAGGCAGGTGG+AGG | 0.559115 | 7_4:-63816660 | None:intergenic |
| CTTCTTGTTCTAATCAAGGT+GGG | 0.559628 | 7_4:+63816766 | Msa1170550:CDS |
| GATGAAAGGTATTACAAAAG+GGG | 0.559891 | 7_4:+63817362 | Msa1170550:CDS |
| AGAAGTAAAAGATTTGGGTG+AGG | 0.564111 | 7_4:+63817448 | Msa1170550:CDS |
| GGGTTGTGATCATGTGGTGA+TGG | 0.571859 | 7_4:-63816738 | None:intergenic |
| GATGGATATGAATAAGATAG+TGG | 0.582410 | 7_4:+63816518 | None:intergenic |
| GCCAAAATCTACAAACACTA+CGG | 0.595515 | 7_4:-63816623 | None:intergenic |
| CTACTTCTATTATGAAAGCA+GGG | 0.600724 | 7_4:+63817547 | Msa1170550:CDS |
| ACTTCTTGTTCTAATCAAGG+TGG | 0.607280 | 7_4:+63816765 | Msa1170550:CDS |
| ATCATGTTAAAGGATGATTG+TGG | 0.624512 | 7_4:+63817107 | Msa1170550:CDS |
| TATAAGCTTGATCAAGAATG+GGG | 0.627945 | 7_4:+63817416 | Msa1170550:CDS |
| CAAAGGTTGTGAGAGGCAGG+TGG | 0.633368 | 7_4:-63816663 | None:intergenic |
| GATGATATAATACATTACAA+GGG | 0.643392 | 7_4:+63817146 | Msa1170550:CDS |
| TAATACGAGAATCCGAGCCG+AGG | 0.671509 | 7_4:+63816848 | Msa1170550:CDS |
| GTTGAAGGGTTGTGATCATG+TGG | 0.682135 | 7_4:-63816744 | None:intergenic |
| TGGAATGCAAAGGTTGTGAG+AGG | 0.687706 | 7_4:-63816670 | None:intergenic |
| GTATGATGGAGGTCTATATG+TGG | 0.691113 | 7_4:+63817322 | Msa1170550:CDS |
| CAATTAGTAGAGTATGATGG+AGG | 0.693642 | 7_4:+63817311 | Msa1170550:CDS |
| CATGTGGTGATGGTTCAATG+CGG | 0.842243 | 7_4:-63816728 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATATTAATGATGAA+AGG | + | chr7_4:63817348-63817367 | Msa1170550:CDS | 10.0% |
| !! | TAATATAAAAATTTACATTC+AGG | + | chr7_4:63817727-63817746 | Msa1170550:intron | 10.0% |
| !! | AAGATTTGTATTTAAATTTA+TGG | + | chr7_4:63818158-63818177 | Msa1170550:intron | 10.0% |
| !!! | TTATTTCAATTTTTTTTAAG+AGG | + | chr7_4:63818549-63818568 | Msa1170550:intron | 10.0% |
| !!! | GAATGGATAAAAAATAATTT+TGG | - | chr7_4:63817797-63817816 | None:intergenic | 15.0% |
| !! | ATTAAAAAATCAACGATTAT+AGG | - | chr7_4:63818043-63818062 | None:intergenic | 15.0% |
| !!! | ATCGTTGATTTTTTAATTTT+TGG | + | chr7_4:63818046-63818065 | Msa1170550:intron | 15.0% |
| !!! | TCGTTGATTTTTTAATTTTT+GGG | + | chr7_4:63818047-63818066 | Msa1170550:intron | 15.0% |
| !! | AAATCCTATTGTTTAATTAT+TGG | + | chr7_4:63818287-63818306 | Msa1170550:intron | 15.0% |
| !!! | GCTTTAATAAAATTCTATTT+TGG | - | chr7_4:63818593-63818612 | None:intergenic | 15.0% |
| !!! | ATTTTGATTATTGTTTTGTT+TGG | - | chr7_4:63818709-63818728 | None:intergenic | 15.0% |
| !! | TATATATTTCAAATACAAAG+GGG | - | chr7_4:63818853-63818872 | None:intergenic | 15.0% |
| !! | GTATATATTTCAAATACAAA+GGG | - | chr7_4:63818854-63818873 | None:intergenic | 15.0% |
| !!! | TTTATTTAATGCCATTTAAA+AGG | + | chr7_4:63818972-63818991 | Msa1170550:intron | 15.0% |
| !! | TATCATAAAAATAAGATACA+GGG | - | chr7_4:63819107-63819126 | None:intergenic | 15.0% |
| !! | ATATCATAAAAATAAGATAC+AGG | - | chr7_4:63819108-63819127 | None:intergenic | 15.0% |
| !! | TTTAAGCTTATTTATCAAAT+TGG | + | chr7_4:63819184-63819203 | Msa1170550:intron | 15.0% |
| !!! | AGTAGAAAATAATTTTGATG+TGG | - | chr7_4:63816693-63816712 | None:intergenic | 20.0% |
| !! | AAAGGAAAATATCATGTTAA+AGG | + | chr7_4:63817097-63817116 | Msa1170550:CDS | 20.0% |
| !! | TGATGATATAATACATTACA+AGG | + | chr7_4:63817145-63817164 | Msa1170550:CDS | 20.0% |
| !! | GATGATATAATACATTACAA+GGG | + | chr7_4:63817146-63817165 | Msa1170550:CDS | 20.0% |
| !! | ATAAAAATTTACATTCAGGA+AGG | + | chr7_4:63817731-63817750 | Msa1170550:intron | 20.0% |
| !! | AAATTTGCACATGAAATAAT+TGG | - | chr7_4:63817826-63817845 | None:intergenic | 20.0% |
| !!! | TACAATTTTATGTCGATTTT+AGG | - | chr7_4:63817886-63817905 | None:intergenic | 20.0% |
| !!! | GATTTTATACAATTTTGTGT+TGG | - | chr7_4:63818008-63818027 | None:intergenic | 20.0% |
| !!! | CGTTGATTTTTTAATTTTTG+GGG | + | chr7_4:63818048-63818067 | Msa1170550:intron | 20.0% |
| !!! | GTTGATTTTTTAATTTTTGG+GGG | + | chr7_4:63818049-63818068 | Msa1170550:intron | 20.0% |
| !! | AGAATTATAGAATTGAACTT+AGG | + | chr7_4:63818197-63818216 | Msa1170550:intron | 20.0% |
| !! | AATTAAACAATAGGATTTCA+AGG | - | chr7_4:63818285-63818304 | None:intergenic | 20.0% |
| !! | CATACCAATAATTAAACAAT+AGG | - | chr7_4:63818294-63818313 | None:intergenic | 20.0% |
| !!! | TATGATTTTGTTTCAATACT+AGG | + | chr7_4:63818329-63818348 | Msa1170550:intron | 20.0% |
| !!! | AATAATTTTGAAACTGAACT+TGG | + | chr7_4:63818377-63818396 | Msa1170550:intron | 20.0% |
| !! | GGTATATATTTCAAATACAA+AGG | - | chr7_4:63818855-63818874 | None:intergenic | 20.0% |
| !! | GAAATATATACCTTAAAGTT+TGG | + | chr7_4:63818863-63818882 | Msa1170550:intron | 20.0% |
| !! | TAAGTACTAAACATATCTTT+CGG | + | chr7_4:63819260-63819279 | Msa1170550:intron | 20.0% |
| !!! | AAGTTTTAGAGTTGAATATT+GGG | - | chr7_4:63819395-63819414 | None:intergenic | 20.0% |
| ! | AAATCTTCTTGAAGATTTGT+GGG | + | chr7_4:63816554-63816573 | Msa1170550:CDS | 25.0% |
| !! | CATCAAATCCAAAACTTTTT+CGG | - | chr7_4:63816880-63816899 | None:intergenic | 25.0% |
| ! | AGTCATCATGAAGATAAAAT+TGG | + | chr7_4:63816939-63816958 | Msa1170550:CDS | 25.0% |
| !!! | AGTAATCTTGTTTTCTATTG+AGG | + | chr7_4:63817013-63817032 | Msa1170550:CDS | 25.0% |
| !!! | GTAATCTTGTTTTCTATTGA+GGG | + | chr7_4:63817014-63817033 | Msa1170550:CDS | 25.0% |
| !! | ATTTTCCTTTTCTCCAATAT+TGG | - | chr7_4:63817087-63817106 | None:intergenic | 25.0% |
| ! | ACTTTATGTTGTGGATAAAA+TGG | + | chr7_4:63817172-63817191 | Msa1170550:CDS | 25.0% |
| ! | CTTTATGTTGTGGATAAAAT+GGG | + | chr7_4:63817173-63817192 | Msa1170550:CDS | 25.0% |
| !! | ATAAAATGGGAACAATTTTC+TGG | + | chr7_4:63817186-63817205 | Msa1170550:CDS | 25.0% |
| !!! | ATGATGAAAGGTATTACAAA+AGG | + | chr7_4:63817360-63817379 | Msa1170550:CDS | 25.0% |
| !!! | TGATGAAAGGTATTACAAAA+GGG | + | chr7_4:63817361-63817380 | Msa1170550:CDS | 25.0% |
| ! | TTTATAAGCTTGATCAAGAA+TGG | + | chr7_4:63817414-63817433 | Msa1170550:CDS | 25.0% |
| ! | TTATAAGCTTGATCAAGAAT+GGG | + | chr7_4:63817415-63817434 | Msa1170550:CDS | 25.0% |
| ! | ATGGTTAGAAGTAAAAGATT+TGG | + | chr7_4:63817442-63817461 | Msa1170550:CDS | 25.0% |
| ! | TGGTTAGAAGTAAAAGATTT+GGG | + | chr7_4:63817443-63817462 | Msa1170550:CDS | 25.0% |
| ! | CTTACAAATTAATTGATCAC+TGG | - | chr7_4:63817647-63817666 | None:intergenic | 25.0% |
| ! | AAAAATAAAACTCCTTTACG+CGG | - | chr7_4:63817850-63817869 | None:intergenic | 25.0% |
| !!! | TTTATGTCGATTTTAGGTTT+TGG | - | chr7_4:63817880-63817899 | None:intergenic | 25.0% |
| !!! | TACAATTTTGTGTTGGTTTT+AGG | - | chr7_4:63818001-63818020 | None:intergenic | 25.0% |
| !!! | ATTTTTTAATTTTTGGGGGT+GGG | + | chr7_4:63818053-63818072 | Msa1170550:intron | 25.0% |
| ! | ATACAAATCTTCAATGAAGT+TGG | - | chr7_4:63818149-63818168 | None:intergenic | 25.0% |
| ! | TGAAACAAAATCATATCCAA+AGG | - | chr7_4:63818324-63818343 | None:intergenic | 25.0% |
| !!! | TTATCTGTGTGTTCATTTTT+AGG | + | chr7_4:63818412-63818431 | Msa1170550:intron | 25.0% |
| !!! | GTGTTCATTTTTAGGAATAA+TGG | + | chr7_4:63818420-63818439 | Msa1170550:intron | 25.0% |
| !! | TTTGGCCTCTTAAAAAATTT+TGG | - | chr7_4:63818575-63818594 | None:intergenic | 25.0% |
| ! | AAAAAGATGCCAAAACAAAA+CGG | + | chr7_4:63818674-63818693 | Msa1170550:intron | 25.0% |
| !!! | TGATTATTGTTTTGTTTGGT+TGG | - | chr7_4:63818705-63818724 | None:intergenic | 25.0% |
| ! | AGAAAGGATGCTTATAAAAA+GGG | + | chr7_4:63819147-63819166 | Msa1170550:intron | 25.0% |
| ! | TAAGTACTTTATAAGAGAGT+TGG | - | chr7_4:63819232-63819251 | None:intergenic | 25.0% |
| ! | AAGTACTAAACATATCTTTC+GGG | + | chr7_4:63819261-63819280 | Msa1170550:intron | 25.0% |
| !!! | CAAGTTTTAGAGTTGAATAT+TGG | - | chr7_4:63819396-63819415 | None:intergenic | 25.0% |
| CAAATCTTCTTGAAGATTTG+TGG | + | chr7_4:63816553-63816572 | Msa1170550:CDS | 30.0% | |
| !! | AATTTTGATGTGGAATGCAA+AGG | - | chr7_4:63816683-63816702 | None:intergenic | 30.0% |
| GATTAGAACAAGAAGTTGAA+GGG | - | chr7_4:63816761-63816780 | None:intergenic | 30.0% | |
| TGATTAGAACAAGAAGTTGA+AGG | - | chr7_4:63816762-63816781 | None:intergenic | 30.0% | |
| TCAACTTCTTGTTCTAATCA+AGG | + | chr7_4:63816762-63816781 | Msa1170550:CDS | 30.0% | |
| ATCAAAGAGATAAAGTTTGG+AGG | - | chr7_4:63816820-63816839 | None:intergenic | 30.0% | |
| GAGATCAAAGAGATAAAGTT+TGG | - | chr7_4:63816823-63816842 | None:intergenic | 30.0% | |
| !!! | AACTTTTTCGGTATTTTCCT+CGG | - | chr7_4:63816868-63816887 | None:intergenic | 30.0% |
| ! | GGAAAATACCGAAAAAGTTT+TGG | + | chr7_4:63816869-63816888 | Msa1170550:CDS | 30.0% |
| TGTTTCCAATATTGGAGAAA+AGG | + | chr7_4:63817079-63817098 | Msa1170550:CDS | 30.0% | |
| ATCATGTTAAAGGATGATTG+TGG | + | chr7_4:63817107-63817126 | Msa1170550:CDS | 30.0% | |
| TGAAAATTGAACCAACTTCA+AGG | - | chr7_4:63817225-63817244 | None:intergenic | 30.0% | |
| TGCTGAAAATAGGCATATAA+GGG | + | chr7_4:63817265-63817284 | Msa1170550:CDS | 30.0% | |
| AAGCAATTAGTAGAGTATGA+TGG | + | chr7_4:63817308-63817327 | Msa1170550:CDS | 30.0% | |
| !! | GATGAAAGGTATTACAAAAG+GGG | + | chr7_4:63817362-63817381 | Msa1170550:CDS | 30.0% |
| TATAAGCTTGATCAAGAATG+GGG | + | chr7_4:63817416-63817435 | Msa1170550:CDS | 30.0% | |
| ! | AGACACAAATTTTGCATTGT+TGG | + | chr7_4:63817490-63817509 | Msa1170550:CDS | 30.0% |
| TCTACTTCTATTATGAAAGC+AGG | + | chr7_4:63817546-63817565 | Msa1170550:CDS | 30.0% | |
| CTACTTCTATTATGAAAGCA+GGG | + | chr7_4:63817547-63817566 | Msa1170550:CDS | 30.0% | |
| CAAATTAATTGATCACTGGA+TGG | - | chr7_4:63817643-63817662 | None:intergenic | 30.0% | |
| GAAATAATTGGTCACTTGAA+TGG | - | chr7_4:63817814-63817833 | None:intergenic | 30.0% | |
| !!! | GCGTAAAGGAGTTTTATTTT+TGG | + | chr7_4:63817849-63817868 | Msa1170550:intron | 30.0% |
| !!! | TTTGTGTTGGTTTTAGGTTT+CGG | - | chr7_4:63817995-63818014 | None:intergenic | 30.0% |
| !!! | GATTTTTTAATTTTTGGGGG+TGG | + | chr7_4:63818052-63818071 | Msa1170550:intron | 30.0% |
| TCAATTCTATAATTCTGCGA+TGG | - | chr7_4:63818193-63818212 | None:intergenic | 30.0% | |
| !! | ATTGGTATGATTTGTTCCTT+TGG | + | chr7_4:63818305-63818324 | Msa1170550:intron | 30.0% |
| !!! | AGAGGCCAAAATTTTTTAAG+AGG | + | chr7_4:63818567-63818586 | Msa1170550:intron | 30.0% |
| AAACATAAGATATAGCAGTG+TGG | - | chr7_4:63818789-63818808 | None:intergenic | 30.0% | |
| TGCTATGTATCCAAACTTTA+AGG | - | chr7_4:63818876-63818895 | None:intergenic | 30.0% | |
| ! | TGTGATTAGTTCACATTTGA+TGG | - | chr7_4:63818921-63818940 | None:intergenic | 30.0% |
| AACAAAGTAATCAAACATCG+AGG | - | chr7_4:63818946-63818965 | None:intergenic | 30.0% | |
| ! | TAATGCCATTTAAAAGGACA+TGG | + | chr7_4:63818978-63818997 | Msa1170550:intron | 30.0% |
| ! | AGTATCCATGTCCTTTTAAA+TGG | - | chr7_4:63818986-63819005 | None:intergenic | 30.0% |
| ! | TTTTATAAGCATCCTTTCTG+CGG | - | chr7_4:63819146-63819165 | None:intergenic | 30.0% |
| CAGAAAGGATGCTTATAAAA+AGG | + | chr7_4:63819146-63819165 | Msa1170550:intron | 30.0% | |
| TAAGCTTAAAACTACTCCTT+CGG | - | chr7_4:63819174-63819193 | None:intergenic | 30.0% | |
| ! | ACTTCTACTTGAACAAGTTT+TGG | + | chr7_4:63819323-63819342 | Msa1170550:intron | 30.0% |
| ! | TTAATCGATGATGATGATGA+TGG | + | chr7_4:63819432-63819451 | Msa1170550:intron | 30.0% |
| GTTGAATTGGATAAAGAAGA+TGG | + | chr7_4:63819456-63819475 | Msa1170550:intron | 30.0% | |
| AAATCAAGTATAGAGGAGTA+AGG | - | chr7_4:63819595-63819614 | None:intergenic | 30.0% | |
| ACAAAGCAAATCAAGTATAG+AGG | - | chr7_4:63819602-63819621 | None:intergenic | 30.0% | |
| ! | TCCGTAGTGTTTGTAGATTT+TGG | + | chr7_4:63816622-63816641 | Msa1170550:CDS | 35.0% |
| GCCAAAATCTACAAACACTA+CGG | - | chr7_4:63816626-63816645 | None:intergenic | 35.0% | |
| !!! | CAATGCGGTATATTTTGGTT+TGG | - | chr7_4:63816716-63816735 | None:intergenic | 35.0% |
| ! | TGGTTCAATGCGGTATATTT+TGG | - | chr7_4:63816721-63816740 | None:intergenic | 35.0% |
| ACTTCTTGTTCTAATCAAGG+TGG | + | chr7_4:63816765-63816784 | Msa1170550:CDS | 35.0% | |
| CTTCTTGTTCTAATCAAGGT+GGG | + | chr7_4:63816766-63816785 | Msa1170550:CDS | 35.0% | |
| GAGTTGACTGTTTCCAATAT+TGG | + | chr7_4:63817071-63817090 | Msa1170550:CDS | 35.0% | |
| !!! | GCACAATGGTACATGTTTTT+TGG | - | chr7_4:63817248-63817267 | None:intergenic | 35.0% |
| TGTACCATTGTGCTGAAAAT+AGG | + | chr7_4:63817255-63817274 | Msa1170550:CDS | 35.0% | |
| ! | TATGCCTATTTTCAGCACAA+TGG | - | chr7_4:63817262-63817281 | None:intergenic | 35.0% |
| GTGCTGAAAATAGGCATATA+AGG | + | chr7_4:63817264-63817283 | Msa1170550:CDS | 35.0% | |
| CAATTAGTAGAGTATGATGG+AGG | + | chr7_4:63817311-63817330 | Msa1170550:CDS | 35.0% | |
| TTGATCAAGAATGGGGTAAA+TGG | + | chr7_4:63817423-63817442 | Msa1170550:CDS | 35.0% | |
| AGAAGTAAAAGATTTGGGTG+AGG | + | chr7_4:63817448-63817467 | Msa1170550:CDS | 35.0% | |
| ! | CTAAACCTGCTGACAAATTT+TGG | + | chr7_4:63817600-63817619 | Msa1170550:CDS | 35.0% |
| ! | GCGGAGCTAGAAAATATTTT+GGG | + | chr7_4:63817765-63817784 | Msa1170550:intron | 35.0% |
| ! | CGGAGCTAGAAAATATTTTG+GGG | + | chr7_4:63817766-63817785 | Msa1170550:intron | 35.0% |
| !! | GGAGCTAGAAAATATTTTGG+GGG | + | chr7_4:63817767-63817786 | Msa1170550:intron | 35.0% |
| !! | CTAGAAAATATTTTGGGGGT+GGG | + | chr7_4:63817771-63817790 | Msa1170550:intron | 35.0% |
| !! | GAGTCACTACACTACTTTTA+CGG | + | chr7_4:63817956-63817975 | Msa1170550:intron | 35.0% |
| !! | AGTCACTACACTACTTTTAC+GGG | + | chr7_4:63817957-63817976 | Msa1170550:intron | 35.0% |
| !! | ACACTACTTTTACGGGAATT+TGG | + | chr7_4:63817964-63817983 | Msa1170550:intron | 35.0% |
| ! | TTTTCTCTATCCATGCATGA+GGG | - | chr7_4:63818123-63818142 | None:intergenic | 35.0% |
| CAAATCTTCAATGAAGTTGG+TGG | - | chr7_4:63818146-63818165 | None:intergenic | 35.0% | |
| TCTATAATTCTGCGATGGAT+AGG | - | chr7_4:63818188-63818207 | None:intergenic | 35.0% | |
| TCACTACTACCAATTGCAAT+TGG | - | chr7_4:63818259-63818278 | None:intergenic | 35.0% | |
| ATACCCAAAAATGGTGACAA+AGG | - | chr7_4:63818815-63818834 | None:intergenic | 35.0% | |
| ACTCAACACATACCCAAAAA+TGG | - | chr7_4:63818824-63818843 | None:intergenic | 35.0% | |
| !! | TTTTGGGTATGTGTTGAGTA+TGG | + | chr7_4:63818825-63818844 | Msa1170550:intron | 35.0% |
| ! | GATTAGTTCACATTTGATGG+AGG | - | chr7_4:63818918-63818937 | None:intergenic | 35.0% |
| TGCTCTCAGTAACAGTAATT+TGG | - | chr7_4:63819013-63819032 | None:intergenic | 35.0% | |
| GAACTTGTCACAACAAAACT+TGG | + | chr7_4:63819063-63819082 | Msa1170550:intron | 35.0% | |
| TTTATAAGCATCCTTTCTGC+GGG | - | chr7_4:63819145-63819164 | None:intergenic | 35.0% | |
| !!! | ACTTGAACAAGTTTTGGTTG+AGG | + | chr7_4:63819329-63819348 | Msa1170550:intron | 35.0% |
| AACATTGTTAGAGGAACTCT+TGG | - | chr7_4:63819368-63819387 | None:intergenic | 35.0% | |
| TTGGGATGAAACATTGTTAG+AGG | - | chr7_4:63819377-63819396 | None:intergenic | 35.0% | |
| ! | TCATCGATTAAATCAGAGCT+TGG | - | chr7_4:63819423-63819442 | None:intergenic | 35.0% |
| GAATTATAAACCACACTGCA+AGG | + | chr7_4:63819486-63819505 | Msa1170550:intron | 35.0% | |
| TTCATGTGGAAAGTTGAGAA+TGG | + | chr7_4:63819515-63819534 | Msa1170550:intron | 35.0% | |
| ! | TTTTGCCGAGATTAGAGATT+CGG | - | chr7_4:63819554-63819573 | None:intergenic | 35.0% |
| ! | AGTAATCTTGTTTCCTGTTG+AGG | + | chr7_4:63819721-63819740 | Msa1170550:CDS | 35.0% |
| ! | GTAATCTTGTTTCCTGTTGA+GGG | + | chr7_4:63819722-63819741 | Msa1170550:CDS | 35.0% |
| CAAGGGACAACTTTATGTTG+TGG | + | chr7_4:63817163-63817182 | Msa1170550:CDS | 40.0% | |
| CAATGCTCTTTCCTTGAAGT+TGG | + | chr7_4:63817211-63817230 | Msa1170550:CDS | 40.0% | |
| ! | GTATGATGGAGGTCTATATG+TGG | + | chr7_4:63817322-63817341 | Msa1170550:CDS | 40.0% |
| CAAAAGGGGTTACTTCTTGA+AGG | + | chr7_4:63817376-63817395 | Msa1170550:CDS | 40.0% | |
| !!! | CTTCTTGAAGGCTGTTTTTG+TGG | + | chr7_4:63817388-63817407 | Msa1170550:CDS | 40.0% |
| !! | TTGTTGGCTCGAGATTACTA+TGG | + | chr7_4:63817506-63817525 | Msa1170550:CDS | 40.0% |
| !! | TGTTGGCTCGAGATTACTAT+GGG | + | chr7_4:63817507-63817526 | Msa1170550:CDS | 40.0% |
| CCAATCCAAAATTTGTCAGC+AGG | - | chr7_4:63817608-63817627 | None:intergenic | 40.0% | |
| ! | CCTGCTGACAAATTTTGGAT+TGG | + | chr7_4:63817605-63817624 | Msa1170550:CDS | 40.0% |
| ATCACTGGATGGAACAAAGT+TGG | - | chr7_4:63817632-63817651 | None:intergenic | 40.0% | |
| ! | GGCGGAGCTAGAAAATATTT+TGG | + | chr7_4:63817764-63817783 | Msa1170550:intron | 40.0% |
| !! | GCTAGAAAATATTTTGGGGG+TGG | + | chr7_4:63817770-63817789 | Msa1170550:intron | 40.0% |
| TGTGCAAATTTACCGCGTAA+AGG | + | chr7_4:63817835-63817854 | Msa1170550:intron | 40.0% | |
| ! | GTTTTCTCTATCCATGCATG+AGG | - | chr7_4:63818124-63818143 | None:intergenic | 40.0% |
| CCAATTGCAATTGGCATAGA+TGG | - | chr7_4:63818250-63818269 | None:intergenic | 40.0% | |
| CCATCTATGCCAATTGCAAT+TGG | + | chr7_4:63818247-63818266 | Msa1170550:intron | 40.0% | |
| !!! | TTGGTTGCACCGTTTTGTTT+TGG | - | chr7_4:63818686-63818705 | None:intergenic | 40.0% |
| AATGAAGTCCTCAACCGTTT+AGG | - | chr7_4:63818752-63818771 | None:intergenic | 40.0% | |
| TAAACGGTTGAGGACTTCAT+TGG | + | chr7_4:63818751-63818770 | Msa1170550:intron | 40.0% | |
| ! | TGAGCCTTTGTCACCATTTT+TGG | + | chr7_4:63818808-63818827 | Msa1170550:intron | 40.0% |
| !! | GAGCCTTTGTCACCATTTTT+GGG | + | chr7_4:63818809-63818828 | Msa1170550:intron | 40.0% |
| CAATTCATGTCATGCTAGCA+TGG | - | chr7_4:63819044-63819063 | None:intergenic | 40.0% | |
| TGCTTATAAAAAGGGACCGA+AGG | + | chr7_4:63819155-63819174 | Msa1170550:intron | 40.0% | |
| !! | TGATGATGATGGCGTTGAAT+TGG | + | chr7_4:63819443-63819462 | Msa1170550:intron | 40.0% |
| ! | TGAACATTTTCCTTGCAGTG+TGG | - | chr7_4:63819499-63819518 | None:intergenic | 40.0% |
| CTGCAAGGAAAATGTTCATG+TGG | + | chr7_4:63819501-63819520 | Msa1170550:intron | 40.0% | |
| AGTATAGAGGAGTAAGGATC+CGG | - | chr7_4:63819589-63819608 | None:intergenic | 40.0% | |
| ACACAAGCACATGTATGAAG+AGG | - | chr7_4:63819630-63819649 | None:intergenic | 40.0% | |
| TCATACATGTGCTTGTGTGA+TGG | + | chr7_4:63819632-63819651 | Msa1170550:intron | 40.0% | |
| !!! | TCTGGTTTTAAGTGTGCATC+TGG | + | chr7_4:63819665-63819684 | Msa1170550:CDS | 40.0% |
| TGGAATGCAAAGGTTGTGAG+AGG | - | chr7_4:63816673-63816692 | None:intergenic | 45.0% | |
| !! | CATGTGGTGATGGTTCAATG+CGG | - | chr7_4:63816731-63816750 | None:intergenic | 45.0% |
| GTTGAAGGGTTGTGATCATG+TGG | - | chr7_4:63816747-63816766 | None:intergenic | 45.0% | |
| ! | TTTCGGTATTTTCCTCGGCT+CGG | - | chr7_4:63816863-63816882 | None:intergenic | 45.0% |
| TTCTATTGAGGGTCGTTGCA+TGG | + | chr7_4:63817025-63817044 | Msa1170550:CDS | 45.0% | |
| ! | GGGTGAGGTTTCGTTTGTTT+TGG | + | chr7_4:63817463-63817482 | Msa1170550:CDS | 45.0% |
| !!! | TATTTTCTAGCTCCGCCACT+GGG | - | chr7_4:63817761-63817780 | None:intergenic | 45.0% |
| !!! | ATATTTTCTAGCTCCGCCAC+TGG | - | chr7_4:63817762-63817781 | None:intergenic | 45.0% |
| GTGACTCCTAAGCACCTAAA+CGG | + | chr7_4:63818735-63818754 | Msa1170550:intron | 45.0% | |
| ! | CATCATTTTCACCCGCAGAA+AGG | + | chr7_4:63819131-63819150 | Msa1170550:intron | 45.0% |
| CCTAGCCGAATCTCTAATCT+CGG | + | chr7_4:63819546-63819565 | Msa1170550:intron | 45.0% | |
| ! | ATCTCGGCAAAATTTTCGCC+AGG | + | chr7_4:63819562-63819581 | Msa1170550:intron | 45.0% |
| ! | TCTCGGCAAAATTTTCGCCA+GGG | + | chr7_4:63819563-63819582 | Msa1170550:intron | 45.0% |
| !! | TGTGATGGATGACAGGTATC+TGG | + | chr7_4:63819647-63819666 | Msa1170550:intron | 45.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr7_4:63817928-63817947 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+TGG | + | chr7_4:63817931-63817950 | Msa1170550:intron | 5.0% |
| !!! | TTGAATTATTTAAATTTTTT+GGG | + | chr7_4:63817932-63817951 | Msa1170550:intron | 5.0% |
| ATGCAAAGGTTGTGAGAGGC+AGG | - | chr7_4:63816669-63816688 | None:intergenic | 50.0% | |
| GGGTTGTGATCATGTGGTGA+TGG | - | chr7_4:63816741-63816760 | None:intergenic | 50.0% | |
| TAATACGAGAATCCGAGCCG+AGG | + | chr7_4:63816848-63816867 | Msa1170550:CDS | 50.0% | |
| CCTCAACCGTTTAGGTGCTT+AGG | - | chr7_4:63818744-63818763 | None:intergenic | 50.0% | |
| CCTAAGCACCTAAACGGTTG+AGG | + | chr7_4:63818741-63818760 | Msa1170550:intron | 50.0% | |
| CCGAGATTAGAGATTCGGCT+AGG | - | chr7_4:63819549-63819568 | None:intergenic | 50.0% | |
| !! | GTGCTTGTGTGATGGATGAC+AGG | + | chr7_4:63819640-63819659 | Msa1170550:intron | 50.0% |
| CAAAGGTTGTGAGAGGCAGG+TGG | - | chr7_4:63816666-63816685 | None:intergenic | 55.0% | |
| !! | TAATTTTTGGGGGTGGGCCG+TGG | + | chr7_4:63818059-63818078 | Msa1170550:intron | 55.0% |
| ! | GGCAAAATTTTCGCCAGGGC+CGG | + | chr7_4:63819567-63819586 | Msa1170550:intron | 55.0% |
| TTGTGAGAGGCAGGTGGAGG+AGG | - | chr7_4:63816660-63816679 | None:intergenic | 60.0% | |
| AGGTTGTGAGAGGCAGGTGG+AGG | - | chr7_4:63816663-63816682 | None:intergenic | 60.0% | |
| ! | ATTCAGGAAGGCGCACCCAG+TGG | + | chr7_4:63817743-63817762 | Msa1170550:intron | 60.0% |
| ! | AGCCCTTCATGGGCTGAGGT+GGG | - | chr7_4:63818085-63818104 | None:intergenic | 60.0% |
| ! | TCAGTGGCGGAGCCCTTCAT+GGG | - | chr7_4:63818095-63818114 | None:intergenic | 60.0% |
| ! | ATGCATGAGGGTGCGCTCAG+TGG | - | chr7_4:63818111-63818130 | None:intergenic | 60.0% |
| ACTGAGCGCACCCTCATGCA+TGG | + | chr7_4:63818110-63818129 | Msa1170550:intron | 60.0% | |
| TCCTGTTGAGGGTCGTCGCA+TGG | + | chr7_4:63819733-63819752 | Msa1170550:CDS | 60.0% | |
| ACCATGCGACGACCCTCAAC+AGG | - | chr7_4:63819737-63819756 | None:intergenic | 60.0% | |
| ! | TCATGGGCTGAGGTGGGCCA+CGG | - | chr7_4:63818079-63818098 | None:intergenic | 65.0% |
| TGGCCCACCTCAGCCCATGA+AGG | + | chr7_4:63818079-63818098 | Msa1170550:intron | 65.0% | |
| GGCCCACCTCAGCCCATGAA+GGG | + | chr7_4:63818080-63818099 | Msa1170550:intron | 65.0% | |
| ! | GAGCCCTTCATGGGCTGAGG+TGG | - | chr7_4:63818086-63818105 | None:intergenic | 65.0% |
| ! | CTCAGTGGCGGAGCCCTTCA+TGG | - | chr7_4:63818096-63818115 | None:intergenic | 65.0% |
| ! | CATGAGGGTGCGCTCAGTGG+CGG | - | chr7_4:63818108-63818127 | None:intergenic | 65.0% |
| GAGGAGTAAGGATCCGGCCC+TGG | - | chr7_4:63819583-63819602 | None:intergenic | 65.0% | |
| ! | CAGGAAGGCGCACCCAGTGG+CGG | + | chr7_4:63817746-63817765 | Msa1170550:intron | 70.0% |
| ! | GCGGAGCCCTTCATGGGCTG+AGG | - | chr7_4:63818089-63818108 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 63816519 | 63819778 | 63816519 | ID=Msa1170550;Name=Msa1170550 |
| chr7_4 | mRNA | 63816519 | 63819778 | 63816519 | ID=Msa1170550-mRNA-1;Parent=Msa1170550;Name=Msa1170550-mRNA-1;_AED=0.22;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|414 |
| chr7_4 | exon | 63816519 | 63817646 | 63816519 | ID=Msa1170550-mRNA-1:exon:20479;Parent=Msa1170550-mRNA-1 |
| chr7_4 | exon | 63819662 | 63819778 | 63819662 | ID=Msa1170550-mRNA-1:exon:20480;Parent=Msa1170550-mRNA-1 |
| chr7_4 | CDS | 63816519 | 63817646 | 63816519 | ID=Msa1170550-mRNA-1:cds;Parent=Msa1170550-mRNA-1 |
| chr7_4 | CDS | 63819662 | 63819778 | 63819662 | ID=Msa1170550-mRNA-1:cds;Parent=Msa1170550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
