Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163740 | XP_013449881.1 | 68.750 | 128 | 35 | 1 | 345 | 467 | 253 | 380 | 7.71e-48 | 180 |
| Msa1163740 | XP_013449881.1 | 79.310 | 377 | 13 | 2 | 1 | 312 | 4 | 380 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163740 | sp|Q1PEZ8|FB117_ARATH | 28.221 | 326 | 167 | 11 | 12 | 295 | 7 | 307 | 6.69e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163740 | A0A072U2J1 | 68.750 | 128 | 35 | 1 | 345 | 467 | 253 | 380 | 3.68e-48 | 180 |
| Msa1163740 | A0A072U2J1 | 79.310 | 377 | 13 | 2 | 1 | 312 | 4 | 380 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1036640 | Msa1163740 | 0.813233 | 2.839398e-51 | -8.615850e-47 |
| Msa1076960 | Msa1163740 | 0.821290 | 4.368758e-53 | -8.615850e-47 |
| Msa0308460 | Msa1163740 | 0.800689 | 1.281160e-48 | -8.615850e-47 |
| Msa1122860 | Msa1163740 | 0.830983 | 2.159003e-55 | -8.615850e-47 |
| Msa1163540 | Msa1163740 | 0.843402 | 1.432421e-58 | -8.615850e-47 |
| Msa1163740 | Msa1170550 | 0.881812 | 1.758679e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163740 | MtrunA17_Chr7g0261121 | 79.310 | 377 | 13 | 2 | 1 | 312 | 4 | 380 | 0.0 | 593 |
| Msa1163740 | MtrunA17_Chr7g0261121 | 68.750 | 128 | 35 | 1 | 345 | 467 | 253 | 380 | 7.09e-52 | 180 |
| Msa1163740 | MtrunA17_Chr8g0378641 | 47.027 | 370 | 123 | 8 | 13 | 312 | 16 | 382 | 4.95e-95 | 292 |
| Msa1163740 | MtrunA17_Chr8g0378641 | 60.163 | 123 | 43 | 2 | 352 | 469 | 263 | 384 | 4.62e-41 | 151 |
| Msa1163740 | MtrunA17_Chr4g0047461 | 56.917 | 253 | 52 | 2 | 118 | 313 | 2 | 254 | 7.17e-84 | 259 |
| Msa1163740 | MtrunA17_Chr4g0047461 | 69.919 | 123 | 32 | 1 | 351 | 468 | 132 | 254 | 8.76e-51 | 173 |
| Msa1163740 | MtrunA17_Chr6g0488491 | 38.816 | 304 | 130 | 11 | 13 | 285 | 11 | 289 | 7.94e-44 | 158 |
| Msa1163740 | MtrunA17_Chr6g0488491 | 37.705 | 122 | 63 | 4 | 352 | 465 | 232 | 348 | 4.24e-12 | 67.4 |
| Msa1163740 | MtrunA17_Chr5g0435201 | 39.145 | 304 | 133 | 11 | 13 | 285 | 9 | 291 | 1.05e-42 | 154 |
| Msa1163740 | MtrunA17_Chr5g0435201 | 42.500 | 120 | 60 | 4 | 352 | 465 | 234 | 350 | 7.22e-15 | 75.9 |
| Msa1163740 | MtrunA17_Chr8g0371031 | 34.286 | 350 | 165 | 15 | 3 | 305 | 20 | 351 | 7.48e-37 | 140 |
| Msa1163740 | MtrunA17_Chr7g0261161 | 70.213 | 94 | 26 | 2 | 193 | 285 | 1 | 93 | 9.66e-35 | 126 |
| Msa1163740 | MtrunA17_Chr7g0261161 | 63.636 | 55 | 20 | 0 | 359 | 413 | 40 | 94 | 1.39e-17 | 79.3 |
| Msa1163740 | MtrunA17_Chr2g0300541 | 36.977 | 311 | 143 | 12 | 12 | 283 | 28 | 324 | 1.86e-34 | 133 |
| Msa1163740 | MtrunA17_Chr8g0371101 | 30.650 | 323 | 160 | 11 | 12 | 287 | 8 | 313 | 7.71e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163740 | AT2G26160.1 | 28.221 | 326 | 167 | 11 | 12 | 295 | 7 | 307 | 6.80e-24 | 102 |
| Msa1163740 | AT1G44080.1 | 29.412 | 289 | 176 | 7 | 12 | 287 | 7 | 280 | 3.66e-22 | 97.8 |
| Msa1163740 | AT1G65770.1 | 28.485 | 330 | 166 | 13 | 12 | 295 | 5 | 310 | 1.87e-20 | 93.2 |
| Msa1163740 | AT3G25750.1 | 27.157 | 313 | 174 | 12 | 12 | 295 | 7 | 294 | 3.19e-17 | 83.2 |
| Msa1163740 | AT3G25750.2 | 26.543 | 324 | 176 | 11 | 12 | 295 | 7 | 308 | 4.69e-16 | 80.1 |
| Msa1163740 | AT4G35733.1 | 24.688 | 320 | 189 | 8 | 12 | 295 | 8 | 311 | 3.82e-14 | 74.3 |
Find 80 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAACCTGCTGACAAATTT+TGG | 0.080030 | 7_4:+55104031 | Msa1163740:CDS |
| GGGTGATGTTTCATTTATTT+TGG | 0.166722 | 7_4:+55108241 | Msa1163740:CDS |
| ACTTTATGTTGTGGATAAAA+TGG | 0.170692 | 7_4:+55103604 | Msa1163740:CDS |
| GAGTTGACTGTTTCCAATAT+TGG | 0.239268 | 7_4:+55103503 | Msa1163740:CDS |
| GTGCTGAAAATAGGCATATA+AGG | 0.260640 | 7_4:+55103696 | Msa1163740:CDS |
| TCCGTAGTGTTTGTAGATTT+TGG | 0.264838 | 7_4:+55103055 | Msa1163740:CDS |
| TGTACCATTGTGCTGAAAAT+AGG | 0.283196 | 7_4:+55103687 | Msa1163740:CDS |
| GAGATCAAAGAGATAAAGTT+TGG | 0.285701 | 7_4:-55103253 | None:intergenic |
| TGGTTCAATGCGGTATATTT+TGG | 0.305635 | 7_4:-55103151 | None:intergenic |
| AAAGGAAAATATCATGTTAA+AGG | 0.318603 | 7_4:+55103529 | Msa1163740:CDS |
| TTGATCAAGAATGGGGTAAA+TGG | 0.326226 | 7_4:+55103855 | Msa1163740:CDS |
| AGACTCAAACTTTGCCTTGC+TGG | 0.326529 | 7_4:+55108268 | Msa1163740:CDS |
| ATGGTTGCATGTAAATGATT+TGG | 0.327851 | 7_4:+55108220 | Msa1163740:CDS |
| ATGGTTAGAAGTAAAAGATT+TGG | 0.332561 | 7_4:+55103874 | Msa1163740:CDS |
| TTGATCAAGAATGGGGTAAA+TGG | 0.333658 | 7_4:+55108201 | Msa1163740:CDS |
| CAAATCTTCTTGAAGATTTG+TGG | 0.347804 | 7_4:+55102986 | Msa1163740:CDS |
| TGGTTAGAAGTAAAAGATTT+GGG | 0.374795 | 7_4:+55103875 | Msa1163740:CDS |
| CAATGCTCTTTCCTTGAAGT+TGG | 0.381115 | 7_4:+55103643 | Msa1163740:CDS |
| CAAAAGGGGTTACTTCTTGA+AGG | 0.384442 | 7_4:+55103808 | Msa1163740:CDS |
| TTGTGAGAGGCAGGTGGAGG+AGG | 0.384893 | 7_4:-55103090 | None:intergenic |
| AAATCTTCTTGAAGATTTGT+GGG | 0.389413 | 7_4:+55102987 | Msa1163740:CDS |
| TTTATAAGCTTGATCAAGAA+TGG | 0.392244 | 7_4:+55103846 | Msa1163740:CDS |
| CTTTATGTTGTGGATAAAAT+GGG | 0.396836 | 7_4:+55103605 | Msa1163740:CDS |
| TTTATGTGCATTTCTATACT+TGG | 0.397395 | 7_4:-55108414 | None:intergenic |
| TCAACTTCTTGTTCTAATCA+AGG | 0.402165 | 7_4:+55103195 | Msa1163740:CDS |
| ATGATGAAAGGTATTACAAA+AGG | 0.404208 | 7_4:+55103792 | Msa1163740:CDS |
| TGTGATGGATGACAGGTATC+TGG | 0.404685 | 7_4:+55106071 | Msa1163740:intron |
| CCAATCCAAAATTTGTCAGC+AGG | 0.420447 | 7_4:-55104036 | None:intergenic |
| GTAATCTTGTTTCCTGTTGA+GGG | 0.424181 | 7_4:+55106146 | Msa1163740:CDS |
| TGGTTGCATGTAAATGATTT+GGG | 0.426714 | 7_4:+55108221 | Msa1163740:CDS |
| TGATGAAAGGTATTACAAAA+GGG | 0.432135 | 7_4:+55103793 | Msa1163740:CDS |
| TGAAAATTGAACCAACTTCA+AGG | 0.432491 | 7_4:-55103654 | None:intergenic |
| TGTTTCCAATATTGGAGAAA+AGG | 0.445230 | 7_4:+55103511 | Msa1163740:CDS |
| CATGACTTCTTGTTTCAGCT+TGG | 0.445646 | 7_4:+55108328 | Msa1163740:CDS |
| TTTACACGCTTGATCAAGAA+TGG | 0.448371 | 7_4:+55108192 | Msa1163740:CDS |
| TTATAAGCTTGATCAAGAAT+GGG | 0.450966 | 7_4:+55103847 | Msa1163740:CDS |
| ACCATGCGACGACCCTCAAC+AGG | 0.457909 | 7_4:-55106158 | None:intergenic |
| AGTAATCTTGTTTCCTGTTG+AGG | 0.464240 | 7_4:+55106145 | Msa1163740:CDS |
| TTCTATTGAGGGTCGTTGCA+TGG | 0.467549 | 7_4:+55103457 | Msa1163740:intron |
| TGATGATATAATACATTACA+AGG | 0.467606 | 7_4:+55103577 | Msa1163740:CDS |
| TCCTGTTGAGGGTCGTCGCA+TGG | 0.473404 | 7_4:+55106157 | Msa1163740:CDS |
| GGATGGAACAAAGTTGGAAA+TGG | 0.475443 | 7_4:-55108386 | None:intergenic |
| GTATTACAAAAGAGGTTACT+TGG | 0.487307 | 7_4:+55108148 | Msa1163740:CDS |
| GTCACAGGATGGAACAAAGT+TGG | 0.491800 | 7_4:-55108392 | None:intergenic |
| TGCTGAAAATAGGCATATAA+GGG | 0.494278 | 7_4:+55103697 | Msa1163740:CDS |
| GATGAAAGGTATTACAAAAG+AGG | 0.497839 | 7_4:+55108140 | Msa1163740:CDS |
| TTACACGCTTGATCAAGAAT+GGG | 0.501411 | 7_4:+55108193 | Msa1163740:CDS |
| ATCACTGGATGGAACAAAGT+TGG | 0.510777 | 7_4:-55104060 | None:intergenic |
| TGATTAGAACAAGAAGTTGA+AGG | 0.514698 | 7_4:-55103192 | None:intergenic |
| ATCAAAGAGATAAAGTTTGG+AGG | 0.516104 | 7_4:-55103250 | None:intergenic |
| GATTAGAACAAGAAGTTGAA+GGG | 0.519595 | 7_4:-55103191 | None:intergenic |
| ATTTATATATTAATGATGAA+AGG | 0.523166 | 7_4:+55103780 | Msa1163740:CDS |
| ATTTGTATATTAATGATGAA+AGG | 0.523166 | 7_4:+55108126 | Msa1163740:CDS |
| CAAGGGACAACTTTATGTTG+TGG | 0.530035 | 7_4:+55103595 | Msa1163740:CDS |
| ATGCAAAGGTTGTGAGAGGC+AGG | 0.537372 | 7_4:-55103099 | None:intergenic |
| AAGCAATTAGTAGAGTATGA+TGG | 0.538440 | 7_4:+55103740 | Msa1163740:CDS |
| CAAAAGAGGTTACTTGGTCA+AGG | 0.546142 | 7_4:+55108154 | Msa1163740:CDS |
| TTCTATACTTGGTCACAGGA+TGG | 0.555924 | 7_4:-55108403 | None:intergenic |
| AGGTTGTGAGAGGCAGGTGG+AGG | 0.559115 | 7_4:-55103093 | None:intergenic |
| CTTCTTGTTCTAATCAAGGT+GGG | 0.559628 | 7_4:+55103199 | Msa1163740:CDS |
| GCATTTCTATACTTGGTCAC+AGG | 0.559680 | 7_4:-55108407 | None:intergenic |
| GATGAAAGGTATTACAAAAG+GGG | 0.559891 | 7_4:+55103794 | Msa1163740:CDS |
| AGAAGTAAAAGATTTGGGTG+AGG | 0.564111 | 7_4:+55103880 | Msa1163740:CDS |
| GGGTTGTGATCATGTGGTGA+TGG | 0.571859 | 7_4:-55103171 | None:intergenic |
| GATGGATATGAATAAGATAG+TGG | 0.582410 | 7_4:+55102951 | None:intergenic |
| GCCAAAATCTACAAACACTA+CGG | 0.595515 | 7_4:-55103056 | None:intergenic |
| ATATCTTTCTTGAGCCAGCA+AGG | 0.595768 | 7_4:-55108282 | None:intergenic |
| ACTTCTTGTTCTAATCAAGG+TGG | 0.607280 | 7_4:+55103198 | Msa1163740:CDS |
| ATCATGTTAAAGGATGATTG+TGG | 0.624512 | 7_4:+55103539 | Msa1163740:CDS |
| TATAAGCTTGATCAAGAATG+GGG | 0.627945 | 7_4:+55103848 | Msa1163740:CDS |
| CAAAGGTTGTGAGAGGCAGG+TGG | 0.633368 | 7_4:-55103096 | None:intergenic |
| GATGATATAATACATTACAA+GGG | 0.643392 | 7_4:+55103578 | Msa1163740:CDS |
| TACACGCTTGATCAAGAATG+GGG | 0.653406 | 7_4:+55108194 | Msa1163740:CDS |
| GTATAATGAAAGTCTCTATG+TGG | 0.654236 | 7_4:+55108100 | Msa1163740:CDS |
| TAATACGAGAATCCGAGCCG+AGG | 0.671509 | 7_4:+55103281 | Msa1163740:CDS |
| GTTGAAGGGTTGTGATCATG+TGG | 0.682135 | 7_4:-55103177 | None:intergenic |
| TGGAATGCAAAGGTTGTGAG+AGG | 0.687706 | 7_4:-55103103 | None:intergenic |
| GTATGATGGAGGTCTATATG+TGG | 0.691113 | 7_4:+55103754 | Msa1163740:CDS |
| CAATTAGTAGAGTATGATGG+AGG | 0.693642 | 7_4:+55103743 | Msa1163740:CDS |
| CATGTGGTGATGGTTCAATG+CGG | 0.842243 | 7_4:-55103161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATATTAATGATGAA+AGG | + | chr7_4:55103780-55103799 | Msa1163740:CDS | 10.0% |
| !! | TAATATAAAAATTTACATTC+AGG | + | chr7_4:55104158-55104177 | Msa1163740:intron | 10.0% |
| !!! | TTATTTCAATTTTTTTTAAG+AGG | + | chr7_4:55104977-55104996 | Msa1163740:intron | 10.0% |
| !!! | AAAAATAGATTTTTTTTTAG+AGG | + | chr7_4:55106784-55106803 | Msa1163740:intron | 10.0% |
| !!! | AAAAAATAATTTAGTTTGTT+TGG | - | chr7_4:55106879-55106898 | None:intergenic | 10.0% |
| !!! | AAATATTTTGTCAAAAAATT+TGG | - | chr7_4:55107320-55107339 | None:intergenic | 10.0% |
| !!! | GAATGGATAAAAAATAATTT+TGG | - | chr7_4:55104228-55104247 | None:intergenic | 15.0% |
| !! | ATTAAAAAATCAACGATTAT+AGG | - | chr7_4:55104471-55104490 | None:intergenic | 15.0% |
| !!! | ATCGTTGATTTTTTAATTTT+TGG | + | chr7_4:55104474-55104493 | Msa1163740:intron | 15.0% |
| !!! | TCGTTGATTTTTTAATTTTT+GGG | + | chr7_4:55104475-55104494 | Msa1163740:intron | 15.0% |
| !!! | GAAGATTTGTATTTAATTTA+TGG | + | chr7_4:55104585-55104604 | Msa1163740:intron | 15.0% |
| !! | AAATCCTATTGTTTAATTAT+TGG | + | chr7_4:55104714-55104733 | Msa1163740:intron | 15.0% |
| !!! | GCTTTAATAAAATTCTATTT+TGG | - | chr7_4:55105021-55105040 | None:intergenic | 15.0% |
| !!! | ATTTTGATTATTGTTTTGTT+TGG | - | chr7_4:55105136-55105155 | None:intergenic | 15.0% |
| !! | TATATATTTCAAATACAAAG+GGG | - | chr7_4:55105280-55105299 | None:intergenic | 15.0% |
| !! | GTATATATTTCAAATACAAA+GGG | - | chr7_4:55105281-55105300 | None:intergenic | 15.0% |
| !!! | ATTTATTTAATGCCATTTAA+AGG | + | chr7_4:55105398-55105417 | Msa1163740:intron | 15.0% |
| !! | TATCATAAAAATAAGATACA+GGG | - | chr7_4:55105532-55105551 | None:intergenic | 15.0% |
| !! | ATATCATAAAAATAAGATAC+AGG | - | chr7_4:55105533-55105552 | None:intergenic | 15.0% |
| !!! | TTTTAGCTTATTTATCAAAT+TGG | + | chr7_4:55105608-55105627 | Msa1163740:intron | 15.0% |
| !!! | CTAAAAAAAGATTTTTTTAG+AGG | + | chr7_4:55106432-55106451 | Msa1163740:intron | 15.0% |
| !!! | AAAAAGAGTGATTTTTATTA+CGG | + | chr7_4:55106548-55106567 | Msa1163740:intron | 15.0% |
| !! | TCAAATAATTTAGAGATTAT+GGG | - | chr7_4:55107032-55107051 | None:intergenic | 15.0% |
| !! | ATCAAATAATTTAGAGATTA+TGG | - | chr7_4:55107033-55107052 | None:intergenic | 15.0% |
| !! | ATAATTACTAAAATGAACAT+AGG | + | chr7_4:55107167-55107186 | Msa1163740:intron | 15.0% |
| !! | CATAGGTAAATAAAAATAAA+TGG | + | chr7_4:55107184-55107203 | Msa1163740:intron | 15.0% |
| !!! | AAGTTTTGGATTTTTTTTTA+CGG | - | chr7_4:55107492-55107511 | None:intergenic | 15.0% |
| !!! | TCATGTTCATAAATATTTTA+TGG | + | chr7_4:55107518-55107537 | Msa1163740:intron | 15.0% |
| !!! | CATGTTCATAAATATTTTAT+GGG | + | chr7_4:55107519-55107538 | Msa1163740:intron | 15.0% |
| !!! | ATGTTCATAAATATTTTATG+GGG | + | chr7_4:55107520-55107539 | Msa1163740:intron | 15.0% |
| !! | TTAAATACAAACCATAAAAA+AGG | + | chr7_4:55107588-55107607 | Msa1163740:intron | 15.0% |
| !! | ATTTGTATATTAATGATGAA+AGG | + | chr7_4:55108126-55108145 | Msa1163740:CDS | 15.0% |
| !!! | AGTAGAAAATAATTTTGATG+TGG | - | chr7_4:55103126-55103145 | None:intergenic | 20.0% |
| !! | AAAGGAAAATATCATGTTAA+AGG | + | chr7_4:55103529-55103548 | Msa1163740:CDS | 20.0% |
| !! | TGATGATATAATACATTACA+AGG | + | chr7_4:55103577-55103596 | Msa1163740:CDS | 20.0% |
| !! | GATGATATAATACATTACAA+GGG | + | chr7_4:55103578-55103597 | Msa1163740:CDS | 20.0% |
| !! | ATAAAAATTTACATTCAGGA+AGG | + | chr7_4:55104162-55104181 | Msa1163740:intron | 20.0% |
| !! | TAAATTTGCACATGAAATAA+TGG | - | chr7_4:55104257-55104276 | None:intergenic | 20.0% |
| !!! | TACAATTTTATGTCGATTTT+AGG | - | chr7_4:55104316-55104335 | None:intergenic | 20.0% |
| !!! | GATTTTATACAATTTTGTGT+TGG | - | chr7_4:55104436-55104455 | None:intergenic | 20.0% |
| !!! | CGTTGATTTTTTAATTTTTG+GGG | + | chr7_4:55104476-55104495 | Msa1163740:intron | 20.0% |
| !!! | GTTGATTTTTTAATTTTTGG+GGG | + | chr7_4:55104477-55104496 | Msa1163740:intron | 20.0% |
| !! | AGAATTATAGAATTGAACTT+AGG | + | chr7_4:55104624-55104643 | Msa1163740:intron | 20.0% |
| !! | AATTAAACAATAGGATTTCA+AGG | - | chr7_4:55104712-55104731 | None:intergenic | 20.0% |
| !! | CATACCAATAATTAAACAAT+AGG | - | chr7_4:55104721-55104740 | None:intergenic | 20.0% |
| !!! | TATGATTTTGTTTCAATACT+AGG | + | chr7_4:55104756-55104775 | Msa1163740:intron | 20.0% |
| !!! | AATAATTTTGAAACTGAACT+TGG | + | chr7_4:55104804-55104823 | Msa1163740:intron | 20.0% |
| !!! | TGTTTCATTTTTAGGAATAA+TGG | + | chr7_4:55104848-55104867 | Msa1163740:intron | 20.0% |
| !! | GGTATATATTTCAAATACAA+AGG | - | chr7_4:55105282-55105301 | None:intergenic | 20.0% |
| !! | GAAATATATACCTTAAAGTT+TGG | + | chr7_4:55105290-55105309 | Msa1163740:intron | 20.0% |
| !! | TAAGTACTAAACATATCTTT+CGG | + | chr7_4:55105684-55105703 | Msa1163740:intron | 20.0% |
| !!! | AAGTTTTAGAGTTGAATATT+GGG | - | chr7_4:55105819-55105838 | None:intergenic | 20.0% |
| !! | ATCTTAAAAGCTATAACAAA+CGG | - | chr7_4:55106292-55106311 | None:intergenic | 20.0% |
| !!! | TTTTCAAAATCTGTAACAAA+CGG | - | chr7_4:55106362-55106381 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | - | chr7_4:55106509-55106528 | None:intergenic | 20.0% |
| !!! | AACAAATAATCTAGTTTGTT+TGG | - | chr7_4:55106527-55106546 | None:intergenic | 20.0% |
| !! | TAAAAAAAGCTATAACAAAC+GGG | - | chr7_4:55106626-55106645 | None:intergenic | 20.0% |
| !! | CTAAAAAAAGCTATAACAAA+CGG | - | chr7_4:55106627-55106646 | None:intergenic | 20.0% |
| !!! | TTATTTTAATCCGTAACAAA+CGG | + | chr7_4:55107005-55107024 | Msa1163740:intron | 20.0% |
| !!! | TAAACAGAATGAATGTTTTT+TGG | + | chr7_4:55107114-55107133 | Msa1163740:intron | 20.0% |
| !! | AAAAATACAACAAATCTGAA+TGG | + | chr7_4:55107461-55107480 | Msa1163740:intron | 20.0% |
| !! | GTAAAAAAAAATCCAAAACT+TGG | + | chr7_4:55107491-55107510 | Msa1163740:intron | 20.0% |
| !!! | TATGGTTTGTATTTAATTTG+AGG | - | chr7_4:55107584-55107603 | None:intergenic | 20.0% |
| !!! | TTATCAATTCTCCTTTTTTA+TGG | - | chr7_4:55107602-55107621 | None:intergenic | 20.0% |
| !! | GAATTGATAAAAGACAATAA+AGG | + | chr7_4:55107612-55107631 | Msa1163740:intron | 20.0% |
| !! | AAGACAATAAAGGAAATAAT+AGG | + | chr7_4:55107622-55107641 | Msa1163740:intron | 20.0% |
| !! | TTGGAAACTTTAAATACTTA+GGG | - | chr7_4:55107849-55107868 | None:intergenic | 20.0% |
| !! | ATTGGAAACTTTAAATACTT+AGG | - | chr7_4:55107850-55107869 | None:intergenic | 20.0% |
| !!! | GTATTTAAAGTTTCCAATAT+TGG | + | chr7_4:55107852-55107871 | Msa1163740:intron | 20.0% |
| !! | AAAGCAAAATACCATATTAA+AGG | + | chr7_4:55107878-55107897 | Msa1163740:intron | 20.0% |
| !! | TGATGATATAATACTGTATA+AGG | + | chr7_4:55107925-55107944 | Msa1163740:intron | 20.0% |
| !! | GATGATATAATACTGTATAA+GGG | + | chr7_4:55107926-55107945 | Msa1163740:intron | 20.0% |
| ! | AAATCTTCTTGAAGATTTGT+GGG | + | chr7_4:55102987-55103006 | Msa1163740:CDS | 25.0% |
| !! | CATCAAATCCAAAACTTTTT+CGG | - | chr7_4:55103313-55103332 | None:intergenic | 25.0% |
| ! | AGTCATCATGAAGATAAAAT+TGG | + | chr7_4:55103371-55103390 | Msa1163740:intron | 25.0% |
| !!! | AGTAATCTTGTTTTCTATTG+AGG | + | chr7_4:55103445-55103464 | Msa1163740:intron | 25.0% |
| !!! | GTAATCTTGTTTTCTATTGA+GGG | + | chr7_4:55103446-55103465 | Msa1163740:intron | 25.0% |
| !! | ATTTTCCTTTTCTCCAATAT+TGG | - | chr7_4:55103519-55103538 | None:intergenic | 25.0% |
| ! | ACTTTATGTTGTGGATAAAA+TGG | + | chr7_4:55103604-55103623 | Msa1163740:CDS | 25.0% |
| ! | CTTTATGTTGTGGATAAAAT+GGG | + | chr7_4:55103605-55103624 | Msa1163740:CDS | 25.0% |
| !! | ATAAAATGGGAACAATTTTC+TGG | + | chr7_4:55103618-55103637 | Msa1163740:CDS | 25.0% |
| !!! | ATGATGAAAGGTATTACAAA+AGG | + | chr7_4:55103792-55103811 | Msa1163740:CDS | 25.0% |
| !!! | TGATGAAAGGTATTACAAAA+GGG | + | chr7_4:55103793-55103812 | Msa1163740:CDS | 25.0% |
| ! | TTTATAAGCTTGATCAAGAA+TGG | + | chr7_4:55103846-55103865 | Msa1163740:CDS | 25.0% |
| ! | TTATAAGCTTGATCAAGAAT+GGG | + | chr7_4:55103847-55103866 | Msa1163740:CDS | 25.0% |
| ! | ATGGTTAGAAGTAAAAGATT+TGG | + | chr7_4:55103874-55103893 | Msa1163740:CDS | 25.0% |
| ! | TGGTTAGAAGTAAAAGATTT+GGG | + | chr7_4:55103875-55103894 | Msa1163740:CDS | 25.0% |
| ! | CTTACAAATTAATTGATCAC+TGG | - | chr7_4:55104078-55104097 | None:intergenic | 25.0% |
| ! | AAAAATAAAACTCCTTTACG+CGG | - | chr7_4:55104280-55104299 | None:intergenic | 25.0% |
| !!! | TTTATGTCGATTTTAGGTTT+TGG | - | chr7_4:55104310-55104329 | None:intergenic | 25.0% |
| !!! | TACAATTTTGTGTTGGTTTT+AGG | - | chr7_4:55104429-55104448 | None:intergenic | 25.0% |
| !!! | ATTTTTTAATTTTTGGGGGT+GGG | + | chr7_4:55104481-55104500 | Msa1163740:intron | 25.0% |
| ! | ATACAAATCTTCAATGAAGT+TGG | - | chr7_4:55104577-55104596 | None:intergenic | 25.0% |
| ! | TGAAACAAAATCATATCCAA+AGG | - | chr7_4:55104751-55104770 | None:intergenic | 25.0% |
| !!! | TATCTGTGTGTTTCATTTTT+AGG | + | chr7_4:55104840-55104859 | Msa1163740:intron | 25.0% |
| !! | TTTGGCCTCTTAAAAAATTT+TGG | - | chr7_4:55105003-55105022 | None:intergenic | 25.0% |
| ! | AAAAAGATGCCAAAACAAAA+CGG | + | chr7_4:55105101-55105120 | Msa1163740:intron | 25.0% |
| !!! | TGATTATTGTTTTGTTTGGT+TGG | - | chr7_4:55105132-55105151 | None:intergenic | 25.0% |
| ! | AGAAAGGATGCTTATAAAAA+GGG | + | chr7_4:55105572-55105591 | Msa1163740:intron | 25.0% |
| ! | TAAGTACTTTATAAGAGAGT+TGG | - | chr7_4:55105656-55105675 | None:intergenic | 25.0% |
| ! | AAGTACTAAACATATCTTTC+GGG | + | chr7_4:55105685-55105704 | Msa1163740:intron | 25.0% |
| !!! | CAAGTTTTAGAGTTGAATAT+TGG | - | chr7_4:55105820-55105839 | None:intergenic | 25.0% |
| ! | TCTTAAAAGCTATAACAAAC+GGG | - | chr7_4:55106291-55106310 | None:intergenic | 25.0% |
| !!! | CGTTTGTTATAGCTTTTTTT+AGG | + | chr7_4:55106625-55106644 | Msa1163740:intron | 25.0% |
| !!! | TATTTTAATCCGTAACAAAC+GGG | + | chr7_4:55107006-55107025 | Msa1163740:intron | 25.0% |
| ! | TTTAATCCATAACAAACGTT+TGG | + | chr7_4:55107070-55107089 | Msa1163740:intron | 25.0% |
| !! | AATATTTTATGGGGCTAATT+TGG | + | chr7_4:55107529-55107548 | Msa1163740:intron | 25.0% |
| !!! | TTAAGGAGAATTACTTTTAG+AGG | + | chr7_4:55107716-55107735 | Msa1163740:intron | 25.0% |
| !! | GTGAAAAATTGAGTTTTCAA+TGG | - | chr7_4:55107774-55107793 | None:intergenic | 25.0% |
| !!! | AACTCAATTTTTCACTTTTG+AGG | + | chr7_4:55107779-55107798 | Msa1163740:intron | 25.0% |
| !!! | ATTTTGCTTTTCTCCAATAT+TGG | - | chr7_4:55107868-55107887 | None:intergenic | 25.0% |
| ! | AATACCATATTAAAGGATGA+TGG | + | chr7_4:55107885-55107904 | Msa1163740:intron | 25.0% |
| ! | CTTTATGTTATGGATGATAA+AGG | + | chr7_4:55107953-55107972 | Msa1163740:intron | 25.0% |
| !! | ATGATAAAGGAACAATTTTC+TGG | + | chr7_4:55107966-55107985 | Msa1163740:intron | 25.0% |
| !!! | CTAAACCAGCTAATATTTTT+TGG | + | chr7_4:55108363-55108382 | Msa1163740:CDS | 25.0% |
| ! | TTTATGTGCATTTCTATACT+TGG | - | chr7_4:55108417-55108436 | None:intergenic | 25.0% |
| CAAATCTTCTTGAAGATTTG+TGG | + | chr7_4:55102986-55103005 | Msa1163740:CDS | 30.0% | |
| !! | AATTTTGATGTGGAATGCAA+AGG | - | chr7_4:55103116-55103135 | None:intergenic | 30.0% |
| GATTAGAACAAGAAGTTGAA+GGG | - | chr7_4:55103194-55103213 | None:intergenic | 30.0% | |
| TGATTAGAACAAGAAGTTGA+AGG | - | chr7_4:55103195-55103214 | None:intergenic | 30.0% | |
| TCAACTTCTTGTTCTAATCA+AGG | + | chr7_4:55103195-55103214 | Msa1163740:CDS | 30.0% | |
| ATCAAAGAGATAAAGTTTGG+AGG | - | chr7_4:55103253-55103272 | None:intergenic | 30.0% | |
| GAGATCAAAGAGATAAAGTT+TGG | - | chr7_4:55103256-55103275 | None:intergenic | 30.0% | |
| !!! | AACTTTTTCGGTATTTTCCT+CGG | - | chr7_4:55103301-55103320 | None:intergenic | 30.0% |
| ! | GGAAAATACCGAAAAAGTTT+TGG | + | chr7_4:55103302-55103321 | Msa1163740:CDS | 30.0% |
| TGTTTCCAATATTGGAGAAA+AGG | + | chr7_4:55103511-55103530 | Msa1163740:CDS | 30.0% | |
| ATCATGTTAAAGGATGATTG+TGG | + | chr7_4:55103539-55103558 | Msa1163740:CDS | 30.0% | |
| TGAAAATTGAACCAACTTCA+AGG | - | chr7_4:55103657-55103676 | None:intergenic | 30.0% | |
| TGCTGAAAATAGGCATATAA+GGG | + | chr7_4:55103697-55103716 | Msa1163740:CDS | 30.0% | |
| AAGCAATTAGTAGAGTATGA+TGG | + | chr7_4:55103740-55103759 | Msa1163740:CDS | 30.0% | |
| !! | GATGAAAGGTATTACAAAAG+GGG | + | chr7_4:55103794-55103813 | Msa1163740:CDS | 30.0% |
| TATAAGCTTGATCAAGAATG+GGG | + | chr7_4:55103848-55103867 | Msa1163740:CDS | 30.0% | |
| ! | AGACACAAATTTTGCATTGT+TGG | + | chr7_4:55103922-55103941 | Msa1163740:intron | 30.0% |
| TCTACTTCTATTATGAAAGC+AGG | + | chr7_4:55103978-55103997 | Msa1163740:intron | 30.0% | |
| CAAATTAATTGATCACTGGA+TGG | - | chr7_4:55104074-55104093 | None:intergenic | 30.0% | |
| TGAAATAATGGTCACTTGAA+TGG | - | chr7_4:55104245-55104264 | None:intergenic | 30.0% | |
| !!! | GCGTAAAGGAGTTTTATTTT+TGG | + | chr7_4:55104279-55104298 | Msa1163740:intron | 30.0% |
| !!! | TTTGTGTTGGTTTTAGGTTT+CGG | - | chr7_4:55104423-55104442 | None:intergenic | 30.0% |
| !!! | GATTTTTTAATTTTTGGGGG+TGG | + | chr7_4:55104480-55104499 | Msa1163740:intron | 30.0% |
| TCAATTCTATAATTCTGCGA+TGG | - | chr7_4:55104620-55104639 | None:intergenic | 30.0% | |
| !! | ATTGGTATGATTTGTTCCTT+TGG | + | chr7_4:55104732-55104751 | Msa1163740:intron | 30.0% |
| !!! | AGAGGCCAAAATTTTTTAAG+AGG | + | chr7_4:55104995-55105014 | Msa1163740:intron | 30.0% |
| AAACATAAGATATAGCAGTG+TGG | - | chr7_4:55105216-55105235 | None:intergenic | 30.0% | |
| TGCTATGTATCCAAACTTTA+AGG | - | chr7_4:55105303-55105322 | None:intergenic | 30.0% | |
| ! | TGTGATTAGTTCACATTTGA+TGG | - | chr7_4:55105348-55105367 | None:intergenic | 30.0% |
| AACAAAGTAATCAAACATCG+AGG | - | chr7_4:55105373-55105392 | None:intergenic | 30.0% | |
| ! | TTAATGCCATTTAAAGGACA+TGG | + | chr7_4:55105404-55105423 | Msa1163740:intron | 30.0% |
| ! | TTTTATAAGCATCCTTTCTG+CGG | - | chr7_4:55105571-55105590 | None:intergenic | 30.0% |
| CAGAAAGGATGCTTATAAAA+AGG | + | chr7_4:55105571-55105590 | Msa1163740:intron | 30.0% | |
| ATAAGCTAAAACTACTCCTT+CGG | - | chr7_4:55105599-55105618 | None:intergenic | 30.0% | |
| ! | ACTTCTACTTGAACAAGTTT+TGG | + | chr7_4:55105747-55105766 | Msa1163740:intron | 30.0% |
| ! | TTAATCGATGATGATGATGA+TGG | + | chr7_4:55105856-55105875 | Msa1163740:intron | 30.0% |
| GTTGAATTGGATAAAGAAGA+TGG | + | chr7_4:55105880-55105899 | Msa1163740:intron | 30.0% | |
| AAATCAAGTATAGAGGAGTA+AGG | - | chr7_4:55106019-55106038 | None:intergenic | 30.0% | |
| ACAAAGCAAATCAAGTATAG+AGG | - | chr7_4:55106026-55106045 | None:intergenic | 30.0% | |
| ATAGTGATTAAGTGTGTGTT+TGG | + | chr7_4:55106192-55106211 | Msa1163740:intron | 30.0% | |
| TTTAGAGGAGAGAGAAAATA+TGG | + | chr7_4:55106447-55106466 | Msa1163740:intron | 30.0% | |
| ! | TCTATTTTGCGTTTGTTTAG+CGG | - | chr7_4:55106925-55106944 | None:intergenic | 30.0% |
| ! | TTGTATCCAAACGTTTGTTA+TGG | - | chr7_4:55107079-55107098 | None:intergenic | 30.0% |
| GAAGAACATAATGATAGAGA+TGG | + | chr7_4:55107405-55107424 | Msa1163740:intron | 30.0% | |
| ! | ATTGAGTTTTCAATGGTGTT+TGG | - | chr7_4:55107767-55107786 | None:intergenic | 30.0% |
| TTTGTAGAAGTGATTCTTGA+TGG | + | chr7_4:55107802-55107821 | Msa1163740:intron | 30.0% | |
| TAAGGGACAACTTTATGTTA+TGG | + | chr7_4:55107943-55107962 | Msa1163740:intron | 30.0% | |
| TGAAAATTGAACCAACTTCA+AGG | - | chr7_4:55103657-55103676 | None:intergenic | 30.0% | |
| GTATAATGAAAGTCTCTATG+TGG | + | chr7_4:55108100-55108119 | Msa1163740:CDS | 30.0% | |
| !! | GATGAAAGGTATTACAAAAG+AGG | + | chr7_4:55103794-55103813 | Msa1163740:CDS | 30.0% |
| GTATTACAAAAGAGGTTACT+TGG | + | chr7_4:55108148-55108167 | Msa1163740:CDS | 30.0% | |
| ATGGTTGCATGTAAATGATT+TGG | + | chr7_4:55108220-55108239 | Msa1163740:CDS | 30.0% | |
| TGGTTGCATGTAAATGATTT+GGG | + | chr7_4:55108221-55108240 | Msa1163740:CDS | 30.0% | |
| ! | GGGTGATGTTTCATTTATTT+TGG | + | chr7_4:55108241-55108260 | Msa1163740:CDS | 30.0% |
| AATGGCCAAAAAATATTAGC+TGG | - | chr7_4:55108371-55108390 | None:intergenic | 30.0% | |
| ! | TCCGTAGTGTTTGTAGATTT+TGG | + | chr7_4:55103055-55103074 | Msa1163740:CDS | 35.0% |
| GCCAAAATCTACAAACACTA+CGG | - | chr7_4:55103059-55103078 | None:intergenic | 35.0% | |
| !!! | CAATGCGGTATATTTTGGTT+TGG | - | chr7_4:55103149-55103168 | None:intergenic | 35.0% |
| ! | TGGTTCAATGCGGTATATTT+TGG | - | chr7_4:55103154-55103173 | None:intergenic | 35.0% |
| ACTTCTTGTTCTAATCAAGG+TGG | + | chr7_4:55103198-55103217 | Msa1163740:CDS | 35.0% | |
| CTTCTTGTTCTAATCAAGGT+GGG | + | chr7_4:55103199-55103218 | Msa1163740:CDS | 35.0% | |
| GAGTTGACTGTTTCCAATAT+TGG | + | chr7_4:55103503-55103522 | Msa1163740:CDS | 35.0% | |
| !!! | GCACAATGGTACATGTTTTT+TGG | - | chr7_4:55103680-55103699 | None:intergenic | 35.0% |
| TGTACCATTGTGCTGAAAAT+AGG | + | chr7_4:55103687-55103706 | Msa1163740:CDS | 35.0% | |
| ! | TATGCCTATTTTCAGCACAA+TGG | - | chr7_4:55103694-55103713 | None:intergenic | 35.0% |
| GTGCTGAAAATAGGCATATA+AGG | + | chr7_4:55103696-55103715 | Msa1163740:CDS | 35.0% | |
| CAATTAGTAGAGTATGATGG+AGG | + | chr7_4:55103743-55103762 | Msa1163740:CDS | 35.0% | |
| TTGATCAAGAATGGGGTAAA+TGG | + | chr7_4:55103855-55103874 | Msa1163740:CDS | 35.0% | |
| AGAAGTAAAAGATTTGGGTG+AGG | + | chr7_4:55103880-55103899 | Msa1163740:CDS | 35.0% | |
| ! | CTAAACCTGCTGACAAATTT+TGG | + | chr7_4:55104031-55104050 | Msa1163740:CDS | 35.0% |
| ! | GCGGAGCTAGAAAATATTTT+GGG | + | chr7_4:55104196-55104215 | Msa1163740:intron | 35.0% |
| ! | CGGAGCTAGAAAATATTTTG+GGG | + | chr7_4:55104197-55104216 | Msa1163740:intron | 35.0% |
| !! | GGAGCTAGAAAATATTTTGG+GGG | + | chr7_4:55104198-55104217 | Msa1163740:intron | 35.0% |
| !! | CTAGAAAATATTTTGGGGGT+GGG | + | chr7_4:55104202-55104221 | Msa1163740:intron | 35.0% |
| TGAGTCACTACACTACTTTA+CGG | + | chr7_4:55104384-55104403 | Msa1163740:intron | 35.0% | |
| TACACTACTTTACGGGAATT+TGG | + | chr7_4:55104392-55104411 | Msa1163740:intron | 35.0% | |
| ! | TTTTCTCTATCCATGCATGA+GGG | - | chr7_4:55104551-55104570 | None:intergenic | 35.0% |
| CAAATCTTCAATGAAGTTGG+TGG | - | chr7_4:55104574-55104593 | None:intergenic | 35.0% | |
| TCTATAATTCTGCGATGGAT+AGG | - | chr7_4:55104615-55104634 | None:intergenic | 35.0% | |
| TCACTACTACCAATTGCAAT+TGG | - | chr7_4:55104686-55104705 | None:intergenic | 35.0% | |
| ATACCCAAAAATGGTGACAA+AGG | - | chr7_4:55105242-55105261 | None:intergenic | 35.0% | |
| ACTCAACACATACCCAAAAA+TGG | - | chr7_4:55105251-55105270 | None:intergenic | 35.0% | |
| !! | TTTTGGGTATGTGTTGAGTA+TGG | + | chr7_4:55105252-55105271 | Msa1163740:intron | 35.0% |
| ! | GATTAGTTCACATTTGATGG+AGG | - | chr7_4:55105345-55105364 | None:intergenic | 35.0% |
| CAGTATCCATGTCCTTTAAA+TGG | - | chr7_4:55105413-55105432 | None:intergenic | 35.0% | |
| TGCTCTCAGTAACAGTAATT+TGG | - | chr7_4:55105439-55105458 | None:intergenic | 35.0% | |
| TGAACTTGTCACAACAAACT+TGG | + | chr7_4:55105488-55105507 | Msa1163740:intron | 35.0% | |
| TTTATAAGCATCCTTTCTGC+GGG | - | chr7_4:55105570-55105589 | None:intergenic | 35.0% | |
| !!! | ACTTGAACAAGTTTTGGTTG+AGG | + | chr7_4:55105753-55105772 | Msa1163740:intron | 35.0% |
| AACATTGTTAGAGGAACTCT+TGG | - | chr7_4:55105792-55105811 | None:intergenic | 35.0% | |
| TTGGGATGAAACATTGTTAG+AGG | - | chr7_4:55105801-55105820 | None:intergenic | 35.0% | |
| ! | TCATCGATTAAATCAGAGCT+TGG | - | chr7_4:55105847-55105866 | None:intergenic | 35.0% |
| GAATTATAAACCACACTGCA+AGG | + | chr7_4:55105910-55105929 | Msa1163740:intron | 35.0% | |
| TTCATGTGGAAAGTTGAGAA+TGG | + | chr7_4:55105939-55105958 | Msa1163740:intron | 35.0% | |
| ! | TTTTGCCGAGATTAGAGATT+CGG | - | chr7_4:55105978-55105997 | None:intergenic | 35.0% |
| ! | AGTAATCTTGTTTCCTGTTG+AGG | + | chr7_4:55106145-55106164 | Msa1163740:CDS | 35.0% |
| ! | GTAATCTTGTTTCCTGTTGA+GGG | + | chr7_4:55106146-55106165 | Msa1163740:CDS | 35.0% |
| !! | AACGGGCTTTAAATCAATTC+TGG | - | chr7_4:55106274-55106293 | None:intergenic | 35.0% |
| ! | GAACATGAGTTACCAAGTTT+TGG | - | chr7_4:55107506-55107525 | None:intergenic | 35.0% |
| ! | TTCTAGAAAAGCCAAAAGCT+AGG | + | chr7_4:55107683-55107702 | Msa1163740:intron | 35.0% |
| !! | AAGCTACAATTCCTAGCTTT+TGG | - | chr7_4:55107697-55107716 | None:intergenic | 35.0% |
| ! | AGCTAGGAATTGTAGCTTTA+AGG | + | chr7_4:55107699-55107718 | Msa1163740:intron | 35.0% |
| ! | GTTTTCAATGGTGTTTGGTT+TGG | - | chr7_4:55107762-55107781 | None:intergenic | 35.0% |
| ! | TACTTAGGGCATGTTTGTTT+TGG | - | chr7_4:55107835-55107854 | None:intergenic | 35.0% |
| ! | ACCATATTAAAGGATGATGG+TGG | + | chr7_4:55107888-55107907 | Msa1163740:intron | 35.0% |
| TCCACCATCATCCTTTAATA+TGG | - | chr7_4:55107892-55107911 | None:intergenic | 35.0% | |
| ! | TGTGACAAAAAGAGGCATAT+AGG | + | chr7_4:55108042-55108061 | Msa1163740:intron | 35.0% |
| ! | GTGACAAAAAGAGGCATATA+GGG | + | chr7_4:55108043-55108062 | Msa1163740:intron | 35.0% |
| TTTACACGCTTGATCAAGAA+TGG | + | chr7_4:55108192-55108211 | Msa1163740:CDS | 35.0% | |
| TTACACGCTTGATCAAGAAT+GGG | + | chr7_4:55108193-55108212 | Msa1163740:CDS | 35.0% | |
| TTGATCAAGAATGGGGTAAA+TGG | + | chr7_4:55103855-55103874 | Msa1163740:CDS | 35.0% | |
| CAAGGGACAACTTTATGTTG+TGG | + | chr7_4:55103595-55103614 | Msa1163740:CDS | 40.0% | |
| CAATGCTCTTTCCTTGAAGT+TGG | + | chr7_4:55103643-55103662 | Msa1163740:CDS | 40.0% | |
| ! | GTATGATGGAGGTCTATATG+TGG | + | chr7_4:55103754-55103773 | Msa1163740:CDS | 40.0% |
| CAAAAGGGGTTACTTCTTGA+AGG | + | chr7_4:55103808-55103827 | Msa1163740:CDS | 40.0% | |
| !!! | CTTCTTGAAGGCTGTTTTTG+TGG | + | chr7_4:55103820-55103839 | Msa1163740:CDS | 40.0% |
| !! | TTGTTGGCTCGAGATTACTA+TGG | + | chr7_4:55103938-55103957 | Msa1163740:intron | 40.0% |
| !! | TGTTGGCTCGAGATTACTAT+GGG | + | chr7_4:55103939-55103958 | Msa1163740:intron | 40.0% |
| CCAATCCAAAATTTGTCAGC+AGG | - | chr7_4:55104039-55104058 | None:intergenic | 40.0% | |
| ! | CCTGCTGACAAATTTTGGAT+TGG | + | chr7_4:55104036-55104055 | Msa1163740:CDS | 40.0% |
| ATCACTGGATGGAACAAAGT+TGG | - | chr7_4:55104063-55104082 | None:intergenic | 40.0% | |
| ! | GGCGGAGCTAGAAAATATTT+TGG | + | chr7_4:55104195-55104214 | Msa1163740:intron | 40.0% |
| !! | GCTAGAAAATATTTTGGGGG+TGG | + | chr7_4:55104201-55104220 | Msa1163740:intron | 40.0% |
| TGTGCAAATTTACCGCGTAA+AGG | + | chr7_4:55104265-55104284 | Msa1163740:intron | 40.0% | |
| GAGTCACTACACTACTTTAC+GGG | + | chr7_4:55104385-55104404 | Msa1163740:intron | 40.0% | |
| ! | GTTTTCTCTATCCATGCATG+AGG | - | chr7_4:55104552-55104571 | None:intergenic | 40.0% |
| CCAATTGCAATTGGCATAGA+TGG | - | chr7_4:55104677-55104696 | None:intergenic | 40.0% | |
| CCATCTATGCCAATTGCAAT+TGG | + | chr7_4:55104674-55104693 | Msa1163740:intron | 40.0% | |
| !!! | TTGGTTGCACCGTTTTGTTT+TGG | - | chr7_4:55105113-55105132 | None:intergenic | 40.0% |
| AATGAAGTCCTCAACCGTTT+AGG | - | chr7_4:55105179-55105198 | None:intergenic | 40.0% | |
| TAAACGGTTGAGGACTTCAT+TGG | + | chr7_4:55105178-55105197 | Msa1163740:intron | 40.0% | |
| ! | TGAGCCTTTGTCACCATTTT+TGG | + | chr7_4:55105235-55105254 | Msa1163740:intron | 40.0% |
| !! | GAGCCTTTGTCACCATTTTT+GGG | + | chr7_4:55105236-55105255 | Msa1163740:intron | 40.0% |
| CAATTCATGTCATGCTAGCA+TGG | - | chr7_4:55105470-55105489 | None:intergenic | 40.0% | |
| TGCTTATAAAAAGGGACCGA+AGG | + | chr7_4:55105580-55105599 | Msa1163740:intron | 40.0% | |
| !! | TGATGATGATGGCGTTGAAT+TGG | + | chr7_4:55105867-55105886 | Msa1163740:intron | 40.0% |
| ! | TGAACATTTTCCTTGCAGTG+TGG | - | chr7_4:55105923-55105942 | None:intergenic | 40.0% |
| CTGCAAGGAAAATGTTCATG+TGG | + | chr7_4:55105925-55105944 | Msa1163740:intron | 40.0% | |
| AGTATAGAGGAGTAAGGATC+CGG | - | chr7_4:55106013-55106032 | None:intergenic | 40.0% | |
| ACACAAGCACATGTATGAAG+AGG | - | chr7_4:55106054-55106073 | None:intergenic | 40.0% | |
| TCATACATGTGCTTGTGTGA+TGG | + | chr7_4:55106056-55106075 | Msa1163740:intron | 40.0% | |
| !!! | TCTGGTTTTAAGTGTGCATC+TGG | + | chr7_4:55106089-55106108 | Msa1163740:CDS | 40.0% |
| TCTTGACAGCTTCTCATTTG+AGG | - | chr7_4:55106405-55106424 | None:intergenic | 40.0% | |
| CAATGCTTTGTCCTTGAAGT+TGG | + | chr7_4:55107991-55108010 | Msa1163740:intron | 40.0% | |
| ! | GTCACAACAGGACAAGTTTT+TGG | - | chr7_4:55108028-55108047 | None:intergenic | 40.0% |
| TGTCCTGTTGTGACAAAAAG+AGG | + | chr7_4:55108034-55108053 | Msa1163740:intron | 40.0% | |
| ! | ATGCCTCTTTTTGTCACAAC+AGG | - | chr7_4:55108040-55108059 | None:intergenic | 40.0% |
| CAAAAGAGGTTACTTGGTCA+AGG | + | chr7_4:55108154-55108173 | Msa1163740:CDS | 40.0% | |
| !!! | CTTGGTCAAGGCTGTTTTTA+TGG | + | chr7_4:55108166-55108185 | Msa1163740:CDS | 40.0% |
| TACACGCTTGATCAAGAATG+GGG | + | chr7_4:55108194-55108213 | Msa1163740:CDS | 40.0% | |
| ATATCTTTCTTGAGCCAGCA+AGG | - | chr7_4:55108285-55108304 | None:intergenic | 40.0% | |
| ! | CATGACTTCTTGTTTCAGCT+TGG | + | chr7_4:55108328-55108347 | Msa1163740:CDS | 40.0% |
| GGATGGAACAAAGTTGGAAA+TGG | - | chr7_4:55108389-55108408 | None:intergenic | 40.0% | |
| TTCTATACTTGGTCACAGGA+TGG | - | chr7_4:55108406-55108425 | None:intergenic | 40.0% | |
| GCATTTCTATACTTGGTCAC+AGG | - | chr7_4:55108410-55108429 | None:intergenic | 40.0% | |
| TGGAATGCAAAGGTTGTGAG+AGG | - | chr7_4:55103106-55103125 | None:intergenic | 45.0% | |
| !! | CATGTGGTGATGGTTCAATG+CGG | - | chr7_4:55103164-55103183 | None:intergenic | 45.0% |
| GTTGAAGGGTTGTGATCATG+TGG | - | chr7_4:55103180-55103199 | None:intergenic | 45.0% | |
| ! | TTTCGGTATTTTCCTCGGCT+CGG | - | chr7_4:55103296-55103315 | None:intergenic | 45.0% |
| TTCTATTGAGGGTCGTTGCA+TGG | + | chr7_4:55103457-55103476 | Msa1163740:intron | 45.0% | |
| ! | GGGTGAGGTTTCGTTTGTTT+TGG | + | chr7_4:55103895-55103914 | Msa1163740:intron | 45.0% |
| !!! | TATTTTCTAGCTCCGCCACT+GGG | - | chr7_4:55104192-55104211 | None:intergenic | 45.0% |
| !!! | ATATTTTCTAGCTCCGCCAC+TGG | - | chr7_4:55104193-55104212 | None:intergenic | 45.0% |
| GTGACTCCTAAGCACCTAAA+CGG | + | chr7_4:55105162-55105181 | Msa1163740:intron | 45.0% | |
| ! | CATCATTTTCACCCGCAGAA+AGG | + | chr7_4:55105556-55105575 | Msa1163740:intron | 45.0% |
| CCTAGCCGAATCTCTAATCT+CGG | + | chr7_4:55105970-55105989 | Msa1163740:intron | 45.0% | |
| ! | ATCTCGGCAAAATTTTCGCC+AGG | + | chr7_4:55105986-55106005 | Msa1163740:intron | 45.0% |
| ! | TCTCGGCAAAATTTTCGCCA+GGG | + | chr7_4:55105987-55106006 | Msa1163740:intron | 45.0% |
| !! | TGTGATGGATGACAGGTATC+TGG | + | chr7_4:55106071-55106090 | Msa1163740:intron | 45.0% |
| ! | GTGTGTGTTTGGTTCAGCTT+TGG | + | chr7_4:55106203-55106222 | Msa1163740:intron | 45.0% |
| ! | GATTATGGGCCCGTTTGTTA+CGG | - | chr7_4:55107018-55107037 | None:intergenic | 45.0% |
| AGACTCAAACTTTGCCTTGC+TGG | + | chr7_4:55108268-55108287 | Msa1163740:CDS | 45.0% | |
| GTCACAGGATGGAACAAAGT+TGG | - | chr7_4:55108395-55108414 | None:intergenic | 45.0% | |
| !! | AAATTTAAATAATTCAATAT+AGG | - | chr7_4:55104358-55104377 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+TGG | + | chr7_4:55104360-55104379 | Msa1163740:intron | 5.0% |
| !!! | TTGAATTATTTAAATTTTTT+GGG | + | chr7_4:55104361-55104380 | Msa1163740:intron | 5.0% |
| !! | AATCAAAATATAAAATTTAA+TGG | + | chr7_4:55107652-55107671 | Msa1163740:intron | 5.0% |
| ATGCAAAGGTTGTGAGAGGC+AGG | - | chr7_4:55103102-55103121 | None:intergenic | 50.0% | |
| GGGTTGTGATCATGTGGTGA+TGG | - | chr7_4:55103174-55103193 | None:intergenic | 50.0% | |
| TAATACGAGAATCCGAGCCG+AGG | + | chr7_4:55103281-55103300 | Msa1163740:CDS | 50.0% | |
| CCTCAACCGTTTAGGTGCTT+AGG | - | chr7_4:55105171-55105190 | None:intergenic | 50.0% | |
| CCTAAGCACCTAAACGGTTG+AGG | + | chr7_4:55105168-55105187 | Msa1163740:intron | 50.0% | |
| CCGAGATTAGAGATTCGGCT+AGG | - | chr7_4:55105973-55105992 | None:intergenic | 50.0% | |
| !! | GTGCTTGTGTGATGGATGAC+AGG | + | chr7_4:55106064-55106083 | Msa1163740:intron | 50.0% |
| CAAAGGTTGTGAGAGGCAGG+TGG | - | chr7_4:55103099-55103118 | None:intergenic | 55.0% | |
| !! | TAATTTTTGGGGGTGGGCCG+TGG | + | chr7_4:55104487-55104506 | Msa1163740:intron | 55.0% |
| ! | GGCAAAATTTTCGCCAGGGC+CGG | + | chr7_4:55105991-55106010 | Msa1163740:intron | 55.0% |
| TTGTGAGAGGCAGGTGGAGG+AGG | - | chr7_4:55103093-55103112 | None:intergenic | 60.0% | |
| AGGTTGTGAGAGGCAGGTGG+AGG | - | chr7_4:55103096-55103115 | None:intergenic | 60.0% | |
| ! | ATTCAGGAAGGCGCACCCAG+TGG | + | chr7_4:55104174-55104193 | Msa1163740:intron | 60.0% |
| ! | AGCCCTTCATGGGCTGAGGT+GGG | - | chr7_4:55104513-55104532 | None:intergenic | 60.0% |
| ! | TCAGTGGCGGAGCCCTTCAT+GGG | - | chr7_4:55104523-55104542 | None:intergenic | 60.0% |
| ! | ATGCATGAGGGTGCGCTCAG+TGG | - | chr7_4:55104539-55104558 | None:intergenic | 60.0% |
| ACTGAGCGCACCCTCATGCA+TGG | + | chr7_4:55104538-55104557 | Msa1163740:intron | 60.0% | |
| TCCTGTTGAGGGTCGTCGCA+TGG | + | chr7_4:55106157-55106176 | Msa1163740:CDS | 60.0% | |
| ACCATGCGACGACCCTCAAC+AGG | - | chr7_4:55106161-55106180 | None:intergenic | 60.0% | |
| ! | TCATGGGCTGAGGTGGGCCA+CGG | - | chr7_4:55104507-55104526 | None:intergenic | 65.0% |
| TGGCCCACCTCAGCCCATGA+AGG | + | chr7_4:55104507-55104526 | Msa1163740:intron | 65.0% | |
| GGCCCACCTCAGCCCATGAA+GGG | + | chr7_4:55104508-55104527 | Msa1163740:intron | 65.0% | |
| ! | GAGCCCTTCATGGGCTGAGG+TGG | - | chr7_4:55104514-55104533 | None:intergenic | 65.0% |
| ! | CTCAGTGGCGGAGCCCTTCA+TGG | - | chr7_4:55104524-55104543 | None:intergenic | 65.0% |
| ! | CATGAGGGTGCGCTCAGTGG+CGG | - | chr7_4:55104536-55104555 | None:intergenic | 65.0% |
| GAGGAGTAAGGATCCGGCCC+TGG | - | chr7_4:55106007-55106026 | None:intergenic | 65.0% | |
| ! | CAGGAAGGCGCACCCAGTGG+CGG | + | chr7_4:55104177-55104196 | Msa1163740:intron | 70.0% |
| ! | GCGGAGCCCTTCATGGGCTG+AGG | - | chr7_4:55104517-55104536 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 55102952 | 55108448 | 55102952 | ID=Msa1163740;Name=Msa1163740 |
| chr7_4 | mRNA | 55102952 | 55108448 | 55102952 | ID=Msa1163740-mRNA-1;Parent=Msa1163740;Name=Msa1163740-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.8|1|1|5|0|478 |
| chr7_4 | exon | 55102952 | 55103371 | 55102952 | ID=Msa1163740-mRNA-1:exon:16097;Parent=Msa1163740-mRNA-1 |
| chr7_4 | exon | 55103467 | 55103901 | 55103467 | ID=Msa1163740-mRNA-1:exon:16098;Parent=Msa1163740-mRNA-1 |
| chr7_4 | exon | 55104000 | 55104077 | 55104000 | ID=Msa1163740-mRNA-1:exon:16099;Parent=Msa1163740-mRNA-1 |
| chr7_4 | exon | 55106086 | 55106194 | 55106086 | ID=Msa1163740-mRNA-1:exon:16100;Parent=Msa1163740-mRNA-1 |
| chr7_4 | exon | 55108054 | 55108448 | 55108054 | ID=Msa1163740-mRNA-1:exon:16101;Parent=Msa1163740-mRNA-1 |
| chr7_4 | CDS | 55102952 | 55103371 | 55102952 | ID=Msa1163740-mRNA-1:cds;Parent=Msa1163740-mRNA-1 |
| chr7_4 | CDS | 55103467 | 55103901 | 55103467 | ID=Msa1163740-mRNA-1:cds;Parent=Msa1163740-mRNA-1 |
| chr7_4 | CDS | 55104000 | 55104077 | 55104000 | ID=Msa1163740-mRNA-1:cds;Parent=Msa1163740-mRNA-1 |
| chr7_4 | CDS | 55106086 | 55106194 | 55106086 | ID=Msa1163740-mRNA-1:cds;Parent=Msa1163740-mRNA-1 |
| chr7_4 | CDS | 55108054 | 55108448 | 55108054 | ID=Msa1163740-mRNA-1:cds;Parent=Msa1163740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
