AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170620 MtrunA17_Chr6g0450991 91.883 308 4 1 1 308 1 287 0.0 572
Msa1170620 MtrunA17_Chr5g0415941 58.451 142 44 4 39 168 51 189 5.54e-42 147
Msa1170620 MtrunA17_Chr4g0060031 38.144 291 125 10 1 249 1 278 2.82e-41 146
Msa1170620 MtrunA17_Chr8g0362751 72.043 93 26 0 63 155 85 177 1.72e-38 137
Msa1170620 MtrunA17_Chr8g0362151 51.748 143 57 3 22 164 44 174 4.32e-38 136
Msa1170620 MtrunA17_Chr6g0453021 61.261 111 42 1 52 162 82 191 3.99e-37 133
Msa1170620 MtrunA17_Chr8g0381741 48.077 156 63 2 32 182 32 174 4.42e-37 134
Msa1170620 MtrunA17_Chr5g0416391 56.154 130 49 1 43 164 45 174 1.81e-36 132
Msa1170620 MtrunA17_Chr3g0119291 56.391 133 54 2 47 177 37 167 1.04e-35 129
Msa1170620 MtrunA17_Chr3g0123691 65.306 98 34 0 66 163 59 156 1.97e-35 129
Msa1170620 MtrunA17_Chr7g0217111 56.250 112 45 2 52 162 67 175 6.74e-31 117
Msa1170620 MtrunA17_Chr7g0265521 57.143 98 35 1 66 163 62 152 5.52e-29 110
Msa1170620 MtrunA17_Chr1g0179581 58.889 90 30 1 66 155 27 109 2.03e-28 105
Msa1170620 MtrunA17_Chr8g0346251 58.537 82 34 0 71 152 45 126 2.27e-27 107
Msa1170620 MtrunA17_Chr3g0127511 57.471 87 37 0 69 155 40 126 3.00e-27 106
Msa1170620 MtrunA17_Chr5g0403701 60.274 73 29 0 67 139 53 125 6.60e-22 91.7
Msa1170620 MtrunA17_Chr1g0151971 49.000 100 51 0 64 163 127 226 2.47e-21 91.7
Msa1170620 MtrunA17_Chr5g0403691 60.274 73 29 0 67 139 53 125 2.48e-21 90.1
Msa1170620 MtrunA17_Chr4g0055851 46.364 110 50 2 52 161 107 207 2.71e-20 88.6
Msa1170620 MtrunA17_Chr4g0044091 48.352 91 47 0 64 154 62 152 5.95e-19 83.2
Msa1170620 MtrunA17_Chr4g0054421 50.000 88 44 0 67 154 127 214 2.01e-18 83.2
Msa1170620 MtrunA17_Chr5g0399491 47.222 108 48 2 54 161 125 223 2.15e-18 83.6
Msa1170620 MtrunA17_Chr8g0335131 48.864 88 45 0 67 154 146 233 2.68e-18 83.6
Msa1170620 MtrunA17_Chr7g0258831 47.525 101 46 1 61 161 154 247 2.81e-18 83.2
Msa1170620 MtrunA17_Chr5g0400781 50.000 88 44 0 67 154 123 210 3.93e-18 82.4
Msa1170620 MtrunA17_Chr4g0071411 45.361 97 48 1 70 166 91 182 1.02e-17 80.5
Msa1170620 MtrunA17_Chr3g0135331 46.739 92 49 0 67 158 145 236 1.61e-17 81.3
Msa1170620 MtrunA17_Chr1g0175651 46.535 101 47 1 61 161 148 241 3.18e-17 80.5
Msa1170620 MtrunA17_Chr2g0308611 47.368 95 43 1 67 161 200 287 4.50e-17 80.5
Msa1170620 MtrunA17_Chr2g0299031 43.182 88 50 0 67 154 82 169 3.38e-13 67.8
Msa1170620 MtrunA17_Chr8g0350321 38.318 107 50 3 56 160 105 197 6.02e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170620 AT3G01470.1 52.597 308 102 9 1 302 1 270 1.10e-90 271
Msa1170620 AT2G22430.1 56.391 133 44 1 66 184 61 193 1.63e-38 138
Msa1170620 AT4G40060.1 62.727 110 41 0 53 162 45 154 4.58e-38 137
Msa1170620 AT5G15150.1 71.111 90 26 0 66 155 114 203 1.60e-35 130
Msa1170620 AT5G65310.2 62.000 100 38 0 64 163 51 150 3.47e-35 129
Msa1170620 AT5G65310.1 62.000 100 38 0 64 163 69 168 5.65e-35 129
Msa1170620 AT1G69780.1 61.765 102 37 1 56 155 72 173 7.94e-35 128
Msa1170620 AT3G01220.1 63.918 97 35 0 66 162 86 182 1.70e-33 124
Msa1170620 AT1G26960.1 49.286 140 62 3 29 165 36 169 8.50e-32 119
Msa1170620 AT1G27045.5 57.576 99 42 0 67 165 25 123 1.50e-30 114
Msa1170620 AT1G27045.3 57.576 99 42 0 67 165 25 123 1.50e-30 114
Msa1170620 AT1G27045.2 57.576 99 42 0 67 165 17 115 1.60e-30 114
Msa1170620 AT1G27045.1 57.576 99 42 0 67 165 68 166 3.08e-30 114
Msa1170620 AT1G27045.4 52.000 125 56 1 67 187 68 192 9.97e-30 114
Msa1170620 AT2G46680.1 56.818 88 38 0 68 155 33 120 5.80e-29 112
Msa1170620 AT2G46680.2 56.818 88 38 0 68 155 33 120 6.03e-29 112
Msa1170620 AT3G61890.1 54.651 86 39 0 70 155 33 118 4.66e-27 106
Msa1170620 AT5G03790.2 48.333 120 51 2 67 186 77 185 1.53e-26 103
Msa1170620 AT4G36740.1 47.059 119 49 2 67 185 55 159 1.21e-25 102
Msa1170620 AT4G36740.2 47.059 119 49 2 67 185 56 160 1.30e-25 102
Msa1170620 AT5G03790.1 55.682 88 39 0 67 154 77 164 4.90e-25 100
Msa1170620 AT2G36610.1 46.218 119 45 3 66 172 70 181 6.31e-24 96.7
Msa1170620 AT2G18550.1 61.644 73 28 0 67 139 61 133 1.58e-23 96.7
Msa1170620 AT5G66700.1 53.061 98 42 1 67 160 71 168 2.60e-23 96.3
Msa1170620 AT5G53980.1 42.478 113 65 0 58 170 2 114 1.76e-20 86.7
Msa1170620 AT4G17460.1 46.226 106 50 1 56 161 124 222 4.64e-19 85.9
Msa1170620 AT2G22800.1 45.000 100 52 1 58 154 101 200 1.69e-18 84.0
Msa1170620 AT5G06710.1 47.525 101 46 1 61 161 184 277 7.31e-18 83.2
Msa1170620 AT5G47370.1 43.590 117 54 2 50 161 108 217 9.59e-18 82.0
Msa1170620 AT2G01430.1 45.098 102 53 1 56 154 125 226 1.46e-17 81.3
Msa1170620 AT4G37790.1 44.444 99 55 0 56 154 115 213 5.72e-17 79.7
Msa1170620 AT3G60390.1 46.939 98 45 1 64 161 159 249 8.50e-17 79.7
Msa1170620 AT2G44910.1 47.368 95 43 1 67 161 163 250 8.60e-17 79.7
Msa1170620 AT4G16780.1 44.211 95 46 1 67 161 129 216 3.61e-16 77.8
Msa1170620 AT2G01430.2 52.239 67 29 1 56 119 125 191 2.15e-14 71.2
Msa1170620 AT1G70920.2 46.591 88 47 0 67 154 39 126 5.73e-14 69.3
Msa1170620 AT1G70920.1 46.591 88 47 0 67 154 69 156 6.19e-14 70.1
Msa1170620 AT5G06710.4 56.897 58 25 0 61 118 184 241 5.28e-13 68.6
Msa1170620 AT1G73360.1 37.113 97 45 2 66 160 32 114 5.46e-11 63.9

Find 122 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTGAAGCTTCTCATTTA+AGG 0.097700 7_4:-64011607 None:intergenic
ATTAGATACATCATGTAATT+TGG 0.108235 7_4:+64012021 Msa1170620:three_prime_UTR
ACTTCAAAACTTCACGTTAA+AGG 0.158934 7_4:-64009176 None:intergenic
AACATGAACATGCTGTTTCT+TGG 0.235472 7_4:+64009261 Msa1170620:CDS
ATCCTAGTTTCTTGGCCAAC+TGG 0.259750 7_4:-64010770 None:intergenic
TAGCTCCCAATCACCTTCTT+TGG 0.273141 7_4:-64011301 None:intergenic
ATCATGTAATTTGGGTGCTT+TGG 0.283043 7_4:+64012030 Msa1170620:three_prime_UTR
GACGCCATTGCCCAAATTAC+TGG 0.309489 7_4:-64012103 None:intergenic
TCATGTAATTTGGGTGCTTT+GGG 0.328486 7_4:+64012031 Msa1170620:three_prime_UTR
TCTGATTGAACTCTTTCAAT+AGG 0.332216 7_4:-64011849 None:intergenic
TTTCTTGGAAATGCTGATCT+TGG 0.335848 7_4:+64009276 Msa1170620:CDS
GTGGATGACCACATGAGTTC+TGG 0.344344 7_4:+64011717 Msa1170620:CDS
TCAGTGCCTCTCCCTCTTCA+TGG 0.347311 7_4:-64011944 None:intergenic
TGGAAATTTGCTTCTTATGA+TGG 0.352445 7_4:-64011274 None:intergenic
AGGTTGCAATCCTAGTTTCT+TGG 0.355925 7_4:-64010778 None:intergenic
TTAGATACATCATGTAATTT+GGG 0.364008 7_4:+64012022 Msa1170620:three_prime_UTR
AAACTCCAGCAAGGTTGCTT+TGG 0.365281 7_4:+64008981 Msa1170620:five_prime_UTR
CACTTACCAAAGAAGGTGAT+TGG 0.366662 7_4:+64011295 Msa1170620:CDS
AACATATGATTCCATTACTA+AGG 0.392206 7_4:+64010905 Msa1170620:CDS
GTTGTCCAAAGCAACCTTGC+TGG 0.395219 7_4:-64008986 None:intergenic
AATATTTCTATGATGGTTTG+TGG 0.412813 7_4:-64009044 None:intergenic
CCGATTCCGGTGGTCTTTGA+AGG 0.412824 7_4:-64008910 None:intergenic
TTATAGAAATATTTCTATGA+TGG 0.415029 7_4:-64009051 None:intergenic
AGAGAGAGGGAGCCTTCAAC+CGG 0.416452 7_4:-64008792 None:intergenic
GGAATCATATGTTGAAAGTA+GGG 0.419448 7_4:-64010895 None:intergenic
TTCAGAACCGTAGGGCTAGA+TGG 0.424104 7_4:+64010820 Msa1170620:CDS
CCTTCAAAGACCACCGGAAT+CGG 0.430687 7_4:+64008910 Msa1170620:five_prime_UTR
CAATCACCTTCTTTGGTAAG+TGG 0.430947 7_4:-64011294 None:intergenic
GTGAGGCGGCGCTTCTTCTC+CGG 0.438471 7_4:-64010000 None:intergenic
GAAGATGATGGGAGTGATGA+TGG 0.439088 7_4:+64011873 Msa1170620:CDS
TGGAATCATATGTTGAAAGT+AGG 0.440148 7_4:-64010896 None:intergenic
TGTTGAAAGTAGGGAATCAT+AGG 0.441815 7_4:-64010886 None:intergenic
TTTCTCATTCTCCTTAGTAA+TGG 0.443693 7_4:-64010916 None:intergenic
CAAAGCTCTTCTCCAACATA+TGG 0.449623 7_4:-64010713 None:intergenic
AACCTAGGCAGGTGGCTGTA+TGG 0.452751 7_4:+64010796 Msa1170620:CDS
GGAAGGAGAACGCCGGTGGC+CGG 0.458683 7_4:-64008856 None:intergenic
AAGAGGGAGAGGCACTGAAT+TGG 0.468712 7_4:+64011949 Msa1170620:CDS
TCCTAGTTTCTTGGCCAACT+GGG 0.472188 7_4:-64010769 None:intergenic
AGAACGCCGGTGGCCGGAGA+TGG 0.474737 7_4:-64008850 None:intergenic
TTTGGGTGCTTTGGGCGCCT+AGG 0.476188 7_4:+64012039 Msa1170620:three_prime_UTR
AGGGAGAGGCACTGAATTGG+TGG 0.476724 7_4:+64011952 Msa1170620:CDS
TCCTCATCATACAGTTCATC+CGG 0.477560 7_4:-64009958 None:intergenic
AAATTTCCACTTACCAAAGA+AGG 0.478182 7_4:+64011288 Msa1170620:CDS
TGAGCTATGTCCACTGGAAG+TGG 0.478436 7_4:-64011678 None:intergenic
GTTCAATCAGAGGAAGATGA+TGG 0.478448 7_4:+64011861 Msa1170620:CDS
ACTAGGATTGCAACCTAGGC+AGG 0.478866 7_4:+64010785 Msa1170620:CDS
CACAGAAAACACCCGGTTGA+AGG 0.485081 7_4:+64008780 Msa1170620:five_prime_UTR
AGAAACTAGGATTGCAACCT+AGG 0.487565 7_4:+64010781 Msa1170620:CDS
CGATTCCGGTGGTCTTTGAA+GGG 0.488176 7_4:-64008909 None:intergenic
AGATCCCATCATGCACTGTA+AGG 0.493831 7_4:-64008942 None:intergenic
ACTTACCAAAGAAGGTGATT+GGG 0.495751 7_4:+64011296 Msa1170620:CDS
TTTGATTCTCCTGCTTGTCG+TGG 0.496337 7_4:+64009234 Msa1170620:CDS
CACCGGCGTTCTCCTTCCTC+CGG 0.500855 7_4:+64008861 Msa1170620:five_prime_UTR
CTGTATGGTTTCAGAACCGT+AGG 0.504508 7_4:+64010811 Msa1170620:CDS
CACATGAGTTCTGGAAGCGT+TGG 0.505249 7_4:+64011726 Msa1170620:CDS
TTTACCTTACAGTGCATGAT+GGG 0.507423 7_4:+64008938 Msa1170620:five_prime_UTR
AAAAGATCATTAACTTATGA+CGG 0.515704 7_4:-64009018 None:intergenic
ACCCAGTTGGCCAAGAAACT+AGG 0.526542 7_4:+64010768 Msa1170620:CDS
AACAATGACACCAACGACAC+GGG 0.527406 7_4:-64011775 None:intergenic
CATCCAGCATAGTTGTCAGC+TGG 0.530440 7_4:-64011819 None:intergenic
TTGTCTTCCATCTAGCCCTA+CGG 0.531725 7_4:-64010827 None:intergenic
ATGTTATTCCCACGACAAGC+AGG 0.535589 7_4:-64009243 None:intergenic
TTTCCAGCTGACAACTATGC+TGG 0.536407 7_4:+64011816 Msa1170620:CDS
TTGATTCTCCTGCTTGTCGT+GGG 0.539519 7_4:+64009235 Msa1170620:CDS
GCGCCGCCTCACTTCCGAGC+AGG 0.539627 7_4:+64010011 Msa1170620:CDS
AAGATGATGGGAGTGATGAT+GGG 0.542417 7_4:+64011874 Msa1170620:CDS
GGAAGGTCAATGATGAGCAT+GGG 0.542750 7_4:+64009901 Msa1170620:intron
TTCAATCAGAGGAAGATGAT+GGG 0.547251 7_4:+64011862 Msa1170620:CDS
AAAATCTGAGCTATGTCCAC+TGG 0.550742 7_4:-64011684 None:intergenic
AGGCAAGCAACCAACCTGCT+CGG 0.554902 7_4:-64010025 None:intergenic
AAAACTCCATCTCCGGCCAC+CGG 0.557370 7_4:+64008844 Msa1170620:five_prime_UTR
CTGAAGGGTTTACCGGAGGA+AGG 0.563770 7_4:-64008873 None:intergenic
AACCTTGCTGGAGTTTCTAA+CGG 0.564569 7_4:-64008974 None:intergenic
AGGAAGGTCAATGATGAGCA+TGG 0.567797 7_4:+64009900 Msa1170620:intron
GAGACCTTTCTTTAGCTCAC+CGG 0.569954 7_4:+64009939 Msa1170620:CDS
CAACAATGACACCAACGACA+CGG 0.575613 7_4:-64011776 None:intergenic
AACCATACAGCCACCTGCCT+AGG 0.579439 7_4:-64010798 None:intergenic
AAGTCCAGTAATTTGGGCAA+TGG 0.579629 7_4:+64012099 Msa1170620:three_prime_UTR
TATGTTGGAGAAGAGCTTTG+AGG 0.579800 7_4:+64010716 Msa1170620:CDS
CTTTAGTCACAGAAAACACC+CGG 0.581401 7_4:+64008773 None:intergenic
GGGAGAGGCACTGAATTGGT+GGG 0.586237 7_4:+64011953 Msa1170620:CDS
GGTGTGTGCGTGCGAGAGAG+AGG 0.587148 7_4:-64008806 None:intergenic
TCACCGGAAAACTCCATCTC+CGG 0.587179 7_4:+64008837 Msa1170620:five_prime_UTR
GAAATGAAAGGTAAAATCAG+AGG 0.588163 7_4:-64012210 None:intergenic
TCATCCGGTGAGCTAAAGAA+AGG 0.588529 7_4:-64009943 None:intergenic
TGATGAATAGGTCCATATGT+TGG 0.590134 7_4:+64010701 Msa1170620:intron
AACCAACCTGCTCGGAAGTG+AGG 0.594175 7_4:-64010017 None:intergenic
AGGTGATTGGGAGCTATCAA+AGG 0.596262 7_4:+64011308 Msa1170620:CDS
ACATAACCATGAAGAGGGAG+AGG 0.603541 7_4:+64011938 Msa1170620:CDS
GTGTGTGCGTGCGAGAGAGA+GGG 0.607865 7_4:-64008805 None:intergenic
AAATGAAAGGTAAAATCAGA+GGG 0.611184 7_4:-64012209 None:intergenic
GAAAGCTGATCCACTTCCAG+TGG 0.611490 7_4:+64011668 Msa1170620:CDS
TCAAAGACCACCGGAATCGG+TGG 0.614461 7_4:+64008913 Msa1170620:five_prime_UTR
AGAACAAACTTGAGCCAGAG+AGG 0.615094 7_4:+64010742 Msa1170620:CDS
CAACCTGCTCGGAAGTGAGG+CGG 0.622855 7_4:-64010014 None:intergenic
GAAGGTCAATGATGAGCATG+GGG 0.623217 7_4:+64009902 Msa1170620:CDS
ACAATGACACCAACGACACG+GGG 0.624556 7_4:-64011774 None:intergenic
TGAATCCCTTCAAAGACCAC+CGG 0.626499 7_4:+64008904 Msa1170620:five_prime_UTR
GCCAGAGAGGAAAACCCAGT+TGG 0.627216 7_4:+64010755 Msa1170620:CDS
TGAGCAACATAACCATGAAG+AGG 0.628182 7_4:+64011932 Msa1170620:CDS
GAATGAGAAACTCAAATCTG+AGG 0.629755 7_4:+64010929 Msa1170620:CDS
GGAGAGGCACTGAATTGGTG+GGG 0.631899 7_4:+64011954 Msa1170620:CDS
GAGAGAGGGAGCCTTCAACC+GGG 0.633151 7_4:-64008791 None:intergenic
AAGCGTTGGAAGTGCAGTGG+TGG 0.633588 7_4:+64011740 Msa1170620:CDS
CAACGCTTCCAGAACTCATG+TGG 0.634732 7_4:-64011725 None:intergenic
GAGCAACATAACCATGAAGA+GGG 0.640168 7_4:+64011933 Msa1170620:CDS
ACCGGATGAACTGTATGATG+AGG 0.641946 7_4:+64009957 Msa1170620:CDS
TGACAACTATGCTGGATGTG+TGG 0.645273 7_4:+64011824 Msa1170620:CDS
CGGAGGAAGGAGAACGCCGG+TGG 0.651258 7_4:-64008860 None:intergenic
GTACTACGAAGAACAGTCAC+CGG 0.657008 7_4:+64009981 Msa1170620:CDS
AGGATTGCAACCTAGGCAGG+TGG 0.665303 7_4:+64010788 Msa1170620:CDS
TGGAAGCGTTGGAAGTGCAG+TGG 0.670661 7_4:+64011737 Msa1170620:CDS
ATGATGGGAGTGATGATGGG+AGG 0.679048 7_4:+64011877 Msa1170620:CDS
GTCCGTTAGAAACTCCAGCA+AGG 0.680090 7_4:+64008972 Msa1170620:five_prime_UTR
TATTGAAAGAGTTCAATCAG+AGG 0.686434 7_4:+64011851 Msa1170620:CDS
TTAGAGACATTTCAACACCT+AGG 0.688285 7_4:-64012056 None:intergenic
TGTATGGTTTCAGAACCGTA+GGG 0.689319 7_4:+64010812 Msa1170620:CDS
TGAACTGAAGGGTTTACCGG+AGG 0.690682 7_4:-64008877 None:intergenic
TGATTGGGAGCTATCAAAGG+AGG 0.691655 7_4:+64011311 Msa1170620:CDS
TACCGGAGGAAGGAGAACGC+CGG 0.715230 7_4:-64008863 None:intergenic
CAATGACACCAACGACACGG+GGG 0.756439 7_4:-64011773 None:intergenic
AAGGTCAATGATGAGCATGG+GGG 0.757009 7_4:+64009903 Msa1170620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAATATCAAGTT+TGG + chr7_4:64009070-64009089 Msa1170620:five_prime_UTR 10.0%
!!! ATTAAAATCAAATGTTTTAA+TGG + chr7_4:64011014-64011033 Msa1170620:intron 10.0%
!!! TTATAGAAATATTTCTATGA+TGG - chr7_4:64009054-64009073 None:intergenic 15.0%
!! TACAAACACTAATAAATAAA+TGG - chr7_4:64010268-64010287 None:intergenic 15.0%
!!! ATTTTTTTTAAGTACAACAA+AGG - chr7_4:64012128-64012147 None:intergenic 15.0%
!! AAAAGATCATTAACTTATGA+CGG - chr7_4:64009021-64009040 None:intergenic 20.0%
!!! CTTAATCTATTGAGTTTTTA+TGG + chr7_4:64009315-64009334 Msa1170620:intron 20.0%
!! TACAATCCAAAAAAACAAAA+TGG - chr7_4:64009343-64009362 None:intergenic 20.0%
!!! TTTTTTGGATTGTAAATTGT+TGG + chr7_4:64009349-64009368 Msa1170620:intron 20.0%
!!! TGATTTGATTTGATTTGATT+TGG + chr7_4:64009575-64009594 Msa1170620:intron 20.0%
!!! GATTTGATTTGATTTGATTT+GGG + chr7_4:64009576-64009595 Msa1170620:intron 20.0%
!!! TTGATTTGAGTTTTTGTTAA+AGG + chr7_4:64009664-64009683 Msa1170620:intron 20.0%
!!! TGTTTATTAGTTTTAGTGAT+TGG + chr7_4:64010436-64010455 Msa1170620:intron 20.0%
!! ATATATGCAAATTGAGAATT+TGG + chr7_4:64011128-64011147 Msa1170620:intron 20.0%
!! ATTAGTGTTATGCATTAAAA+AGG + chr7_4:64011165-64011184 Msa1170620:intron 20.0%
!! AATATAGTGTAGAATCTTAT+GGG - chr7_4:64011342-64011361 None:intergenic 20.0%
!! TAATATAGTGTAGAATCTTA+TGG - chr7_4:64011343-64011362 None:intergenic 20.0%
!!! AGACTAATGAGTTTTTTAAA+AGG + chr7_4:64011494-64011513 Msa1170620:intron 20.0%
!!! GACTAATGAGTTTTTTAAAA+GGG + chr7_4:64011495-64011514 Msa1170620:intron 20.0%
!!! ACTAATGAGTTTTTTAAAAG+GGG + chr7_4:64011496-64011515 Msa1170620:intron 20.0%
!! ATTAGATACATCATGTAATT+TGG + chr7_4:64012021-64012040 Msa1170620:three_prime_UTR 20.0%
!! TTAGATACATCATGTAATTT+GGG + chr7_4:64012022-64012041 Msa1170620:three_prime_UTR 20.0%
!!! ACTTTTTATTTTACTAAGCT+TGG - chr7_4:64012083-64012102 None:intergenic 20.0%
!! AAATAAAAAGTCCAGTAATT+TGG + chr7_4:64012092-64012111 Msa1170620:three_prime_UTR 20.0%
!! AATAAAAAGTCCAGTAATTT+GGG + chr7_4:64012093-64012112 Msa1170620:three_prime_UTR 20.0%
!! AATATTTCTATGATGGTTTG+TGG - chr7_4:64009047-64009066 None:intergenic 25.0%
!! GAAGTTTGAAGTTGAAAAAA+TGG + chr7_4:64009194-64009213 Msa1170620:exon 25.0%
!!! ATGGTACCATTTTGTTTTTT+TGG + chr7_4:64009334-64009353 Msa1170620:intron 25.0%
!!! AAATTGTTGGTTTTGTTGTT+TGG + chr7_4:64009362-64009381 Msa1170620:intron 25.0%
!!! TTGCTTTGTTTTGTTAAGAA+TGG + chr7_4:64009386-64009405 Msa1170620:intron 25.0%
! TGTTAAGAATGGTATTTGTT+TGG + chr7_4:64009397-64009416 Msa1170620:intron 25.0%
!!! TTGATTTTATGAGTTGAGTT+AGG + chr7_4:64009502-64009521 Msa1170620:intron 25.0%
!!! GAGATTTTCTTTTTTTGGTT+AGG + chr7_4:64009544-64009563 Msa1170620:intron 25.0%
!!! TTTGATTTGATTTGGGTTTT+TGG + chr7_4:64009583-64009602 Msa1170620:intron 25.0%
!! AGTGTTATGATTTGTGATAT+AGG + chr7_4:64009797-64009816 Msa1170620:intron 25.0%
!!! GAATTTTTTTGAATGAAAGC+AGG + chr7_4:64009880-64009899 Msa1170620:intron 25.0%
! AAACATATCCAAATTCATTC+AGG - chr7_4:64010052-64010071 None:intergenic 25.0%
!!! TCAACTAAAGTTGATGTATT+TGG + chr7_4:64010322-64010341 Msa1170620:intron 25.0%
!!! TCAACTAAAGTTGATGTATT+TGG - chr7_4:64010322-64010341 None:intergenic 25.0%
!! CCTTTTTACAAGAGATAAAT+GGG - chr7_4:64010384-64010403 None:intergenic 25.0%
!! TCCTTTTTACAAGAGATAAA+TGG - chr7_4:64010385-64010404 None:intergenic 25.0%
!!! TTAGTTTTAGTGATTGGTTA+AGG + chr7_4:64010442-64010461 Msa1170620:intron 25.0%
! TTTGTGATTAACTAACTTTG+TGG + chr7_4:64010676-64010695 Msa1170620:intron 25.0%
! AACATATGATTCCATTACTA+AGG + chr7_4:64010905-64010924 Msa1170620:CDS 25.0%
! AAATTGTCTGTCAAAAGTTA+TGG + chr7_4:64011203-64011222 Msa1170620:intron 25.0%
! AATTGTCTGTCAAAAGTTAT+GGG + chr7_4:64011204-64011223 Msa1170620:intron 25.0%
!!! TTTTTTAAAAGGGGTATGAA+AGG + chr7_4:64011505-64011524 Msa1170620:intron 25.0%
! ACCATAAAATAGTTAACAAG+TGG + chr7_4:64011531-64011550 Msa1170620:intron 25.0%
!!! TCCACTTGTTAACTATTTTA+TGG - chr7_4:64011535-64011554 None:intergenic 25.0%
! AAATGAAAGGTAAAATCAGA+GGG - chr7_4:64012212-64012231 None:intergenic 25.0%
ACTTCAAAACTTCACGTTAA+AGG - chr7_4:64009179-64009198 None:intergenic 30.0%
AAGAATGGTATTTGTTTGGA+TGG + chr7_4:64009401-64009420 Msa1170620:intron 30.0%
ACTTGATCGTGTATCAAATT+TGG + chr7_4:64009617-64009636 Msa1170620:intron 30.0%
CTTGATCGTGTATCAAATTT+GGG + chr7_4:64009618-64009637 Msa1170620:intron 30.0%
! TTTTGTTAAAGGAAGCAACT+TGG + chr7_4:64009675-64009694 Msa1170620:intron 30.0%
AAAACGAGTGTAAATTGATG+AGG + chr7_4:64009844-64009863 Msa1170620:intron 30.0%
!!! TTTTTTGAATGAAAGCAGGA+AGG + chr7_4:64009884-64009903 Msa1170620:intron 30.0%
TGCAATATGTGTGAAAAATG+AGG + chr7_4:64010188-64010207 Msa1170620:intron 30.0%
GCAATATGTGTGAAAAATGA+GGG + chr7_4:64010189-64010208 Msa1170620:intron 30.0%
TTGTCTCTTGTAAAAAGGAT+CGG - chr7_4:64010297-64010316 None:intergenic 30.0%
! TCCTTTTTACAAGAGACAAA+TGG + chr7_4:64010298-64010317 Msa1170620:intron 30.0%
! CCTTTTTACAAGAGACAAAT+GGG + chr7_4:64010299-64010318 Msa1170620:intron 30.0%
CCCATTTATCTCTTGTAAAA+AGG + chr7_4:64010381-64010400 Msa1170620:intron 30.0%
TTATCTCTTGTAAAAAGGAC+CGG + chr7_4:64010386-64010405 Msa1170620:intron 30.0%
!!! TAGTTTTGATATACTCCATC+CGG - chr7_4:64010408-64010427 None:intergenic 30.0%
TCAGTATAAGAGAAAAAGAC+TGG - chr7_4:64010579-64010598 None:intergenic 30.0%
TACTGAAAATATTTAGTCCC+CGG + chr7_4:64010593-64010612 Msa1170620:intron 30.0%
TCATCAATCTAGTTGATCTA+CGG - chr7_4:64010632-64010651 None:intergenic 30.0%
AACTTTGTGGTTTGATGAAT+AGG + chr7_4:64010689-64010708 Msa1170620:intron 30.0%
GGAATCATATGTTGAAAGTA+GGG - chr7_4:64010898-64010917 None:intergenic 30.0%
TGGAATCATATGTTGAAAGT+AGG - chr7_4:64010899-64010918 None:intergenic 30.0%
TTTCTCATTCTCCTTAGTAA+TGG - chr7_4:64010919-64010938 None:intergenic 30.0%
!!! CAAATGTTTTAATGGTCTGA+CGG + chr7_4:64011022-64011041 Msa1170620:intron 30.0%
TCTGTATAGGATAGAATTAG+TGG + chr7_4:64011235-64011254 Msa1170620:intron 30.0%
! TGGAAATTTGCTTCTTATGA+TGG - chr7_4:64011277-64011296 None:intergenic 30.0%
AAATTTCCACTTACCAAAGA+AGG + chr7_4:64011288-64011307 Msa1170620:CDS 30.0%
! TTCGCATAGTTACTTTGAAA+AGG - chr7_4:64011424-64011443 None:intergenic 30.0%
! TAACATGTTGACTATTTCAC+AGG + chr7_4:64011578-64011597 Msa1170620:intron 30.0%
AACTTGAAGCTTCTCATTTA+AGG - chr7_4:64011610-64011629 None:intergenic 30.0%
TCTGATTGAACTCTTTCAAT+AGG - chr7_4:64011852-64011871 None:intergenic 30.0%
TATTGAAAGAGTTCAATCAG+AGG + chr7_4:64011851-64011870 Msa1170620:CDS 30.0%
GAAATGAAAGGTAAAATCAG+AGG - chr7_4:64012213-64012232 None:intergenic 30.0%
! TTTTGAACTGAAGGGTTTAC+CGG - chr7_4:64008883-64008902 None:intergenic 35.0%
!!! GGATTCAGTTTTGAACTGAA+GGG - chr7_4:64008891-64008910 None:intergenic 35.0%
! TTTTACCTTACAGTGCATGA+TGG + chr7_4:64008937-64008956 Msa1170620:five_prime_UTR 35.0%
TTTACCTTACAGTGCATGAT+GGG + chr7_4:64008938-64008957 Msa1170620:five_prime_UTR 35.0%
GAAGTTGAAAAAATGGAGTC+TGG + chr7_4:64009201-64009220 Msa1170620:exon 35.0%
!! AACATGAACATGCTGTTTCT+TGG + chr7_4:64009261-64009280 Msa1170620:CDS 35.0%
TTTCTTGGAAATGCTGATCT+TGG + chr7_4:64009276-64009295 Msa1170620:CDS 35.0%
ATGGTATTTGTTTGGATGGT+TGG + chr7_4:64009405-64009424 Msa1170620:intron 35.0%
TATTTGTTTGGATGGTTGGT+GGG + chr7_4:64009409-64009428 Msa1170620:intron 35.0%
TTATACTGAACACCTTCACT+CGG - chr7_4:64009477-64009496 None:intergenic 35.0%
! ATGAGTTGAGTTAGGTCTTA+TGG + chr7_4:64009510-64009529 Msa1170620:intron 35.0%
! GGTGGGAGATTTTCTTTTTT+TGG + chr7_4:64009539-64009558 Msa1170620:intron 35.0%
CTTGGTTGTGCATCAAAATT+TGG + chr7_4:64009693-64009712 Msa1170620:intron 35.0%
ATATCCAAATTCATTCAGGC+AGG - chr7_4:64010048-64010067 None:intergenic 35.0%
CTAATTGCTGACGAGAAAAA+TGG - chr7_4:64010129-64010148 None:intergenic 35.0%
CCCATTTGTCTCTTGTAAAA+AGG - chr7_4:64010302-64010321 None:intergenic 35.0%
! GATTGGTTAAGGAGAAGTTT+AGG + chr7_4:64010453-64010472 Msa1170620:intron 35.0%
GGTGACTGAAAATTTCCAAT+AGG + chr7_4:64010497-64010516 Msa1170620:intron 35.0%
CATCAATCTAGTTGATCTAC+GGG - chr7_4:64010631-64010650 None:intergenic 35.0%
TGATGAATAGGTCCATATGT+TGG + chr7_4:64010701-64010720 Msa1170620:intron 35.0%
TGTTGAAAGTAGGGAATCAT+AGG - chr7_4:64010889-64010908 None:intergenic 35.0%
GAATGAGAAACTCAAATCTG+AGG + chr7_4:64010929-64010948 Msa1170620:CDS 35.0%
! ATGGGTTTGAGTTTCTGTAT+AGG + chr7_4:64011222-64011241 Msa1170620:intron 35.0%
ACTTACCAAAGAAGGTGATT+GGG + chr7_4:64011296-64011315 Msa1170620:CDS 35.0%
TAGTGTAGAATCTTATGGGT+AGG - chr7_4:64011338-64011357 None:intergenic 35.0%
! TTTAAAAGGGGTATGAAAGG+TGG + chr7_4:64011508-64011527 Msa1170620:intron 35.0%
! TCAGCTTTCTTTTCTGACAA+AGG - chr7_4:64011657-64011676 None:intergenic 35.0%
TTCAATCAGAGGAAGATGAT+GGG + chr7_4:64011862-64011881 Msa1170620:CDS 35.0%
ATCATGTAATTTGGGTGCTT+TGG + chr7_4:64012030-64012049 Msa1170620:three_prime_UTR 35.0%
TCATGTAATTTGGGTGCTTT+GGG + chr7_4:64012031-64012050 Msa1170620:three_prime_UTR 35.0%
TTAGAGACATTTCAACACCT+AGG - chr7_4:64012059-64012078 None:intergenic 35.0%
! AGTTTTCCGGTGAGGTTTTT+TGG - chr7_4:64008830-64008849 None:intergenic 40.0%
!!! GGGATTCAGTTTTGAACTGA+AGG - chr7_4:64008892-64008911 None:intergenic 40.0%
!! AAGGTAAAAACCACCGATTC+CGG - chr7_4:64008926-64008945 None:intergenic 40.0%
AACCTTGCTGGAGTTTCTAA+CGG - chr7_4:64008977-64008996 None:intergenic 40.0%
!! AATGCTGATCTTGGTTTTCG+TGG + chr7_4:64009285-64009304 Msa1170620:CDS 40.0%
GTATTTGTTTGGATGGTTGG+TGG + chr7_4:64009408-64009427 Msa1170620:intron 40.0%
TATACTGAACACCTTCACTC+GGG - chr7_4:64009476-64009495 None:intergenic 40.0%
! AGTTAGGTCTTATGGACAGA+TGG + chr7_4:64009518-64009537 Msa1170620:intron 40.0%
TCCTCATCATACAGTTCATC+CGG - chr7_4:64009961-64009980 None:intergenic 40.0%
CTCTTGTAAAAAGGATCGGA+GGG - chr7_4:64010293-64010312 None:intergenic 40.0%
TCTCTTGTAAAAAGGATCGG+AGG - chr7_4:64010294-64010313 None:intergenic 40.0%
TGGTTAAGGAGAAGTTTAGG+TGG + chr7_4:64010456-64010475 Msa1170620:intron 40.0%
! GAAATTTTCAGTCACCAGAG+AGG - chr7_4:64010493-64010512 None:intergenic 40.0%
AAAATATTTAGTCCCCGGAG+AGG + chr7_4:64010598-64010617 Msa1170620:intron 40.0%
ATCTAGTTGATCTACGGGTT+TGG - chr7_4:64010626-64010645 None:intergenic 40.0%
CAAAGCTCTTCTCCAACATA+TGG - chr7_4:64010716-64010735 None:intergenic 40.0%
TATGTTGGAGAAGAGCTTTG+AGG + chr7_4:64010716-64010735 Msa1170620:CDS 40.0%
AGGTTGCAATCCTAGTTTCT+TGG - chr7_4:64010781-64010800 None:intergenic 40.0%
AGAAACTAGGATTGCAACCT+AGG + chr7_4:64010781-64010800 Msa1170620:CDS 40.0%
TGTATGGTTTCAGAACCGTA+GGG + chr7_4:64010812-64010831 Msa1170620:CDS 40.0%
CAATCACCTTCTTTGGTAAG+TGG - chr7_4:64011297-64011316 None:intergenic 40.0%
CACTTACCAAAGAAGGTGAT+TGG + chr7_4:64011295-64011314 Msa1170620:CDS 40.0%
!! AAAGGCTTTTTCTTCACACC+AGG - chr7_4:64011406-64011425 None:intergenic 40.0%
! CATGTTGACTATTTCACAGG+TGG + chr7_4:64011581-64011600 Msa1170620:intron 40.0%
AAAATCTGAGCTATGTCCAC+TGG - chr7_4:64011687-64011706 None:intergenic 40.0%
! TAGCTCAGATTTTCAGCATC+AGG + chr7_4:64011694-64011713 Msa1170620:CDS 40.0%
! AGCTCAGATTTTCAGCATCA+GGG + chr7_4:64011695-64011714 Msa1170620:CDS 40.0%
GTTCAATCAGAGGAAGATGA+TGG + chr7_4:64011861-64011880 Msa1170620:CDS 40.0%
!! AAGATGATGGGAGTGATGAT+GGG + chr7_4:64011874-64011893 Msa1170620:CDS 40.0%
TGAGCAACATAACCATGAAG+AGG + chr7_4:64011932-64011951 Msa1170620:CDS 40.0%
GAGCAACATAACCATGAAGA+GGG + chr7_4:64011933-64011952 Msa1170620:CDS 40.0%
AAGTCCAGTAATTTGGGCAA+TGG + chr7_4:64012099-64012118 Msa1170620:three_prime_UTR 40.0%
CACACACCAAAAAACCTCAC+CGG + chr7_4:64008821-64008840 Msa1170620:five_prime_UTR 45.0%
TGAATCCCTTCAAAGACCAC+CGG + chr7_4:64008904-64008923 Msa1170620:five_prime_UTR 45.0%
AGATCCCATCATGCACTGTA+AGG - chr7_4:64008945-64008964 None:intergenic 45.0%
AAACTCCAGCAAGGTTGCTT+TGG + chr7_4:64008981-64009000 Msa1170620:five_prime_UTR 45.0%
TTTGATTCTCCTGCTTGTCG+TGG + chr7_4:64009234-64009253 Msa1170620:CDS 45.0%
TTGATTCTCCTGCTTGTCGT+GGG + chr7_4:64009235-64009254 Msa1170620:CDS 45.0%
ATGTTATTCCCACGACAAGC+AGG - chr7_4:64009246-64009265 None:intergenic 45.0%
CTCAGTTGTGTGTGAGTTTC+AGG - chr7_4:64009438-64009457 None:intergenic 45.0%
CACACACAACTGAGAAGTTC+AGG + chr7_4:64009444-64009463 Msa1170620:intron 45.0%
! TAGGTCTTATGGACAGATGG+TGG + chr7_4:64009521-64009540 Msa1170620:intron 45.0%
! AGGTCTTATGGACAGATGGT+GGG + chr7_4:64009522-64009541 Msa1170620:intron 45.0%
AGGAAGGTCAATGATGAGCA+TGG + chr7_4:64009900-64009919 Msa1170620:intron 45.0%
GGAAGGTCAATGATGAGCAT+GGG + chr7_4:64009901-64009920 Msa1170620:intron 45.0%
GAAGGTCAATGATGAGCATG+GGG + chr7_4:64009902-64009921 Msa1170620:CDS 45.0%
AAGGTCAATGATGAGCATGG+GGG + chr7_4:64009903-64009922 Msa1170620:CDS 45.0%
! GAGACCTTTCTTTAGCTCAC+CGG + chr7_4:64009939-64009958 Msa1170620:CDS 45.0%
TCATCCGGTGAGCTAAAGAA+AGG - chr7_4:64009946-64009965 None:intergenic 45.0%
ACCGGATGAACTGTATGATG+AGG + chr7_4:64009957-64009976 Msa1170620:CDS 45.0%
GTACTACGAAGAACAGTCAC+CGG + chr7_4:64009981-64010000 Msa1170620:CDS 45.0%
CTTGCCTGCCTGAATGAATT+TGG + chr7_4:64010041-64010060 Msa1170620:intron 45.0%
CTCTTGTAAAAAGGACCGGA+TGG + chr7_4:64010390-64010409 Msa1170620:intron 45.0%
TCAGTCACCAGAGAGGATTT+GGG - chr7_4:64010486-64010505 None:intergenic 45.0%
TTCAGTCACCAGAGAGGATT+TGG - chr7_4:64010487-64010506 None:intergenic 45.0%
CCAGTCTTACTCGATCCTAT+TGG - chr7_4:64010515-64010534 None:intergenic 45.0%
CCAATAGGATCGAGTAAGAC+TGG + chr7_4:64010512-64010531 Msa1170620:intron 45.0%
TAGGATCGAGTAAGACTGGT+TGG + chr7_4:64010516-64010535 Msa1170620:intron 45.0%
! AGGATCGAGTAAGACTGGTT+GGG + chr7_4:64010517-64010536 Msa1170620:intron 45.0%
AGAACAAACTTGAGCCAGAG+AGG + chr7_4:64010742-64010761 Msa1170620:CDS 45.0%
TCCTAGTTTCTTGGCCAACT+GGG - chr7_4:64010772-64010791 None:intergenic 45.0%
ATCCTAGTTTCTTGGCCAAC+TGG - chr7_4:64010773-64010792 None:intergenic 45.0%
CTGTATGGTTTCAGAACCGT+AGG + chr7_4:64010811-64010830 Msa1170620:CDS 45.0%
TTGTCTTCCATCTAGCCCTA+CGG - chr7_4:64010830-64010849 None:intergenic 45.0%
TAGCTCCCAATCACCTTCTT+TGG - chr7_4:64011304-64011323 None:intergenic 45.0%
AGGTGATTGGGAGCTATCAA+AGG + chr7_4:64011308-64011327 Msa1170620:CDS 45.0%
TGATTGGGAGCTATCAAAGG+AGG + chr7_4:64011311-64011330 Msa1170620:CDS 45.0%
! CTTTTTCTTCACACCAGGTG+GGG - chr7_4:64011401-64011420 None:intergenic 45.0%
!! GCTTTTTCTTCACACCAGGT+GGG - chr7_4:64011402-64011421 None:intergenic 45.0%
! TCAGATTTTCAGCATCAGGG+TGG + chr7_4:64011698-64011717 Msa1170620:CDS 45.0%
AACAATGACACCAACGACAC+GGG - chr7_4:64011778-64011797 None:intergenic 45.0%
CAACAATGACACCAACGACA+CGG - chr7_4:64011779-64011798 None:intergenic 45.0%
TTTCCAGCTGACAACTATGC+TGG + chr7_4:64011816-64011835 Msa1170620:CDS 45.0%
TGACAACTATGCTGGATGTG+TGG + chr7_4:64011824-64011843 Msa1170620:CDS 45.0%
!! GAAGATGATGGGAGTGATGA+TGG + chr7_4:64011873-64011892 Msa1170620:CDS 45.0%
ACATAACCATGAAGAGGGAG+AGG + chr7_4:64011938-64011957 Msa1170620:CDS 45.0%
CACAGAAAACACCCGGTTGA+AGG + chr7_4:64008780-64008799 Msa1170620:five_prime_UTR 50.0%
TCACCGGAAAACTCCATCTC+CGG + chr7_4:64008837-64008856 Msa1170620:five_prime_UTR 50.0%
TGAACTGAAGGGTTTACCGG+AGG - chr7_4:64008880-64008899 None:intergenic 50.0%
CGATTCCGGTGGTCTTTGAA+GGG - chr7_4:64008912-64008931 None:intergenic 50.0%
CCTTCAAAGACCACCGGAAT+CGG + chr7_4:64008910-64008929 Msa1170620:five_prime_UTR 50.0%
!! GTAAAAACCACCGATTCCGG+TGG - chr7_4:64008923-64008942 None:intergenic 50.0%
GTCCGTTAGAAACTCCAGCA+AGG + chr7_4:64008972-64008991 Msa1170620:five_prime_UTR 50.0%
GTTGTCCAAAGCAACCTTGC+TGG - chr7_4:64008989-64009008 None:intergenic 50.0%
TCAATGATGAGCATGGGGGA+AGG + chr7_4:64009907-64009926 Msa1170620:CDS 50.0%
TGGAGAACCCAAATCCTCTC+TGG + chr7_4:64010476-64010495 Msa1170620:intron 50.0%
ACCCAGTTGGCCAAGAAACT+AGG + chr7_4:64010768-64010787 Msa1170620:CDS 50.0%
ACTAGGATTGCAACCTAGGC+AGG + chr7_4:64010785-64010804 Msa1170620:CDS 50.0%
TTCAGAACCGTAGGGCTAGA+TGG + chr7_4:64010820-64010839 Msa1170620:CDS 50.0%
!! GGCTTTTTCTTCACACCAGG+TGG - chr7_4:64011403-64011422 None:intergenic 50.0%
GAAAGCTGATCCACTTCCAG+TGG + chr7_4:64011668-64011687 Msa1170620:CDS 50.0%
TGAGCTATGTCCACTGGAAG+TGG - chr7_4:64011681-64011700 None:intergenic 50.0%
GTGGATGACCACATGAGTTC+TGG + chr7_4:64011717-64011736 Msa1170620:CDS 50.0%
CAACGCTTCCAGAACTCATG+TGG - chr7_4:64011728-64011747 None:intergenic 50.0%
!! CACATGAGTTCTGGAAGCGT+TGG + chr7_4:64011726-64011745 Msa1170620:CDS 50.0%
ACAATGACACCAACGACACG+GGG - chr7_4:64011777-64011796 None:intergenic 50.0%
CATCCAGCATAGTTGTCAGC+TGG - chr7_4:64011822-64011841 None:intergenic 50.0%
!! ATGATGGGAGTGATGATGGG+AGG + chr7_4:64011877-64011896 Msa1170620:CDS 50.0%
!! AAGAGGGAGAGGCACTGAAT+TGG + chr7_4:64011949-64011968 Msa1170620:CDS 50.0%
GACGCCATTGCCCAAATTAC+TGG - chr7_4:64012106-64012125 None:intergenic 50.0%
AGAGAGAGGGAGCCTTCAAC+CGG - chr7_4:64008795-64008814 None:intergenic 55.0%
! GGAGATGGAGTTTTCCGGTG+AGG - chr7_4:64008838-64008857 None:intergenic 55.0%
! TGGCCGGAGATGGAGTTTTC+CGG - chr7_4:64008843-64008862 None:intergenic 55.0%
AAAACTCCATCTCCGGCCAC+CGG + chr7_4:64008844-64008863 Msa1170620:five_prime_UTR 55.0%
CTGAAGGGTTTACCGGAGGA+AGG - chr7_4:64008876-64008895 None:intergenic 55.0%
CCGATTCCGGTGGTCTTTGA+AGG - chr7_4:64008913-64008932 None:intergenic 55.0%
TCAAAGACCACCGGAATCGG+TGG + chr7_4:64008913-64008932 Msa1170620:five_prime_UTR 55.0%
TCAGGTTCGAACCCGAGTGA+AGG + chr7_4:64009462-64009481 Msa1170620:intron 55.0%
GCATGGGGGAAGGCTCAAAA+AGG + chr7_4:64009917-64009936 Msa1170620:CDS 55.0%
AACCAACCTGCTCGGAAGTG+AGG - chr7_4:64010020-64010039 None:intergenic 55.0%
AGGCAAGCAACCAACCTGCT+CGG - chr7_4:64010028-64010047 None:intergenic 55.0%
! TACGGGTTTGGTTCCTCTCC+GGG - chr7_4:64010614-64010633 None:intergenic 55.0%
! CTACGGGTTTGGTTCCTCTC+CGG - chr7_4:64010615-64010634 None:intergenic 55.0%
GCCAGAGAGGAAAACCCAGT+TGG + chr7_4:64010755-64010774 Msa1170620:CDS 55.0%
! GCCAACTGGGTTTTCCTCTC+TGG - chr7_4:64010759-64010778 None:intergenic 55.0%
AGGATTGCAACCTAGGCAGG+TGG + chr7_4:64010788-64010807 Msa1170620:CDS 55.0%
AACCTAGGCAGGTGGCTGTA+TGG + chr7_4:64010796-64010815 Msa1170620:CDS 55.0%
AACCATACAGCCACCTGCCT+AGG - chr7_4:64010801-64010820 None:intergenic 55.0%
! CATCTGTTCTGAACCCCACC+TGG + chr7_4:64011385-64011404 Msa1170620:intron 55.0%
!! TGGAAGCGTTGGAAGTGCAG+TGG + chr7_4:64011737-64011756 Msa1170620:CDS 55.0%
!! AAGCGTTGGAAGTGCAGTGG+TGG + chr7_4:64011740-64011759 Msa1170620:CDS 55.0%
CAATGACACCAACGACACGG+GGG - chr7_4:64011776-64011795 None:intergenic 55.0%
TCAGTGCCTCTCCCTCTTCA+TGG - chr7_4:64011947-64011966 None:intergenic 55.0%
!! AGGGAGAGGCACTGAATTGG+TGG + chr7_4:64011952-64011971 Msa1170620:CDS 55.0%
!! GGGAGAGGCACTGAATTGGT+GGG + chr7_4:64011953-64011972 Msa1170620:CDS 55.0%
!! GGAGAGGCACTGAATTGGTG+GGG + chr7_4:64011954-64011973 Msa1170620:CDS 55.0%
GAGAGAGGGAGCCTTCAACC+GGG - chr7_4:64008794-64008813 None:intergenic 60.0%
GTGTGTGCGTGCGAGAGAGA+GGG - chr7_4:64008808-64008827 None:intergenic 60.0%
TACCGGAGGAAGGAGAACGC+CGG - chr7_4:64008866-64008885 None:intergenic 60.0%
CAACCTGCTCGGAAGTGAGG+CGG - chr7_4:64010017-64010036 None:intergenic 60.0%
! ACGGGTTTGGTTCCTCTCCG+GGG - chr7_4:64010613-64010632 None:intergenic 60.0%
! TTTGGGTGCTTTGGGCGCCT+AGG + chr7_4:64012039-64012058 Msa1170620:three_prime_UTR 60.0%
GGTGTGTGCGTGCGAGAGAG+AGG - chr7_4:64008809-64008828 None:intergenic 65.0%
CACCGGCGTTCTCCTTCCTC+CGG + chr7_4:64008861-64008880 Msa1170620:five_prime_UTR 65.0%
GTGAGGCGGCGCTTCTTCTC+CGG - chr7_4:64010003-64010022 None:intergenic 65.0%
CGCCTCACTTCCGAGCAGGT+TGG + chr7_4:64010015-64010034 Msa1170620:intron 65.0%
GAGAGTAGCCCCCGTGTCGT+TGG + chr7_4:64011765-64011784 Msa1170620:CDS 65.0%
AGAACGCCGGTGGCCGGAGA+TGG - chr7_4:64008853-64008872 None:intergenic 70.0%
GGAAGGAGAACGCCGGTGGC+CGG - chr7_4:64008859-64008878 None:intergenic 70.0%
CGGAGGAAGGAGAACGCCGG+TGG - chr7_4:64008863-64008882 None:intergenic 70.0%
GCGCCGCCTCACTTCCGAGC+AGG + chr7_4:64010011-64010030 Msa1170620:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 64008779 64012238 64008779 ID=Msa1170620;Name=Msa1170620
chr7_4 mRNA 64008779 64012238 64008779 ID=Msa1170620-mRNA-1;Parent=Msa1170620;Name=Msa1170620-mRNA-1;_AED=0.04;_eAED=0.04;_QI=434|0.5|0.8|0.8|1|1|5|240|308
chr7_4 exon 64008779 64009306 64008779 ID=Msa1170620-mRNA-1:exon:20541;Parent=Msa1170620-mRNA-1
chr7_4 exon 64009902 64010032 64009902 ID=Msa1170620-mRNA-1:exon:20542;Parent=Msa1170620-mRNA-1
chr7_4 exon 64010711 64010950 64010711 ID=Msa1170620-mRNA-1:exon:20543;Parent=Msa1170620-mRNA-1
chr7_4 exon 64011270 64011332 64011270 ID=Msa1170620-mRNA-1:exon:20544;Parent=Msa1170620-mRNA-1
chr7_4 exon 64011600 64012238 64011600 ID=Msa1170620-mRNA-1:exon:20545;Parent=Msa1170620-mRNA-1
chr7_4 five_prime_UTR 64008779 64009212 64008779 ID=Msa1170620-mRNA-1:five_prime_utr;Parent=Msa1170620-mRNA-1
chr7_4 CDS 64009213 64009306 64009213 ID=Msa1170620-mRNA-1:cds;Parent=Msa1170620-mRNA-1
chr7_4 CDS 64009902 64010032 64009902 ID=Msa1170620-mRNA-1:cds;Parent=Msa1170620-mRNA-1
chr7_4 CDS 64010711 64010950 64010711 ID=Msa1170620-mRNA-1:cds;Parent=Msa1170620-mRNA-1
chr7_4 CDS 64011270 64011332 64011270 ID=Msa1170620-mRNA-1:cds;Parent=Msa1170620-mRNA-1
chr7_4 CDS 64011600 64011998 64011600 ID=Msa1170620-mRNA-1:cds;Parent=Msa1170620-mRNA-1
chr7_4 three_prime_UTR 64011999 64012238 64011999 ID=Msa1170620-mRNA-1:three_prime_utr;Parent=Msa1170620-mRNA-1
Gene Sequence

>Msa1170620

ATGGAGTCTGGTCGTCTTTACTTTGATTCTCCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGTGGAAGGTCAATGATGAGCATGGGGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAAGAACAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGAACTCCATCATAAGAAGCAAATTTCCACTTACCAAAGAAGGTGATTGGGAGCTATCAAAGGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAGGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCATACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGGTAATATGTATTATGTTGCATAA
Protein sequence

>Msa1170620

MESGRLYFDSPACRGNNMNMLFLGNADLGFRGRSMMSMGEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSENSIIRSKFPLTKEGDWELSKEVVSLNEKLQVQAKDMLEEPLSEKKADPLPVDIAQIFSIRVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA*