AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170810 MtrunA17_Chr8g0373271 80.541 185 2 1 1 151 1 185 1.08e-98 281
Msa1170810 MtrunA17_Chr6g0450081 38.690 168 66 4 14 146 15 180 2.22e-29 105
Msa1170810 MtrunA17_Chr7g0270301 38.690 168 66 4 14 146 15 180 2.22e-29 105
Msa1170810 MtrunA17_Chr5g0401761 37.158 183 77 5 1 147 1 181 2.38e-29 105
Msa1170810 MtrunA17_Chr1g0194261 38.095 168 67 4 14 146 15 180 6.83e-29 104
Msa1170810 MtrunA17_Chr5g0413451 38.095 168 67 4 14 146 15 180 7.69e-29 104
Msa1170810 MtrunA17_Chr5g0413441 38.095 168 67 4 14 146 15 180 7.69e-29 104
Msa1170810 MtrunA17_Chr4g0072861 39.157 166 64 4 15 145 16 179 1.13e-27 101
Msa1170810 MtrunA17_Chr1g0188111 32.530 166 77 2 15 146 16 180 2.39e-23 90.1
Msa1170810 MtrunA17_Chr4g0039591 33.962 159 68 4 16 139 17 173 2.99e-23 90.5
Msa1170810 MtrunA17_Chr5g0395631 33.962 159 68 4 16 139 17 173 4.19e-23 89.7
Msa1170810 MtrunA17_Chr5g0395641 33.333 168 73 5 16 146 17 182 2.34e-22 87.8
Msa1170810 MtrunA17_Chr2g0287721 34.731 167 67 3 16 141 17 182 1.03e-21 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170810 AT2G18390.1 75.676 185 11 1 1 151 1 185 2.14e-83 243
Msa1170810 AT1G10630.1 38.690 168 66 4 14 146 15 180 2.97e-29 105
Msa1170810 AT1G10630.2 38.690 168 66 4 14 146 15 180 2.97e-29 105
Msa1170810 AT2G47170.2 38.690 168 66 4 14 146 15 180 3.10e-29 105
Msa1170810 AT2G47170.1 38.690 168 66 4 14 146 15 180 3.10e-29 105
Msa1170810 AT2G47170.3 38.690 168 66 4 14 146 15 180 3.10e-29 105
Msa1170810 AT5G14670.1 37.870 169 68 4 14 147 15 181 3.37e-29 105
Msa1170810 AT5G14670.2 38.095 168 67 4 14 146 15 180 7.85e-29 104
Msa1170810 AT5G14670.3 38.095 168 67 4 14 146 15 180 7.85e-29 104
Msa1170810 AT3G62290.3 38.095 168 67 4 14 146 15 180 1.16e-28 104
Msa1170810 AT3G62290.1 38.095 168 67 4 14 146 15 180 1.16e-28 104
Msa1170810 AT3G62290.2 38.095 168 67 4 14 146 15 180 1.16e-28 104
Msa1170810 AT1G23490.1 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT1G70490.2 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT1G70490.7 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT1G70490.4 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT1G70490.3 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT1G70490.1 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT1G70490.6 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT1G70490.5 38.095 168 67 4 14 146 15 180 1.47e-28 103
Msa1170810 AT2G24765.1 38.554 166 65 4 15 145 16 179 2.09e-27 100
Msa1170810 AT2G15310.1 35.429 175 77 3 6 146 8 180 4.26e-27 100
Msa1170810 AT5G17060.2 33.750 160 69 4 15 139 16 173 6.12e-24 92.4
Msa1170810 AT5G17060.1 33.750 160 69 4 15 139 16 173 6.12e-24 92.4
Msa1170810 AT3G22950.1 32.530 166 77 2 15 146 16 180 6.55e-24 92.0
Msa1170810 AT3G22950.2 32.530 166 77 2 15 146 16 180 6.55e-24 92.0
Msa1170810 AT3G03120.1 33.125 160 70 4 15 139 16 173 7.03e-24 92.4
Msa1170810 AT5G52210.1 31.325 166 72 3 16 140 17 181 1.55e-17 75.9
Msa1170810 AT5G52210.2 31.325 166 72 3 16 140 17 181 1.55e-17 75.9
Msa1170810 AT1G02440.2 28.947 114 68 4 14 119 15 123 7.92e-12 59.3

Find 87 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTGGTATTGGAGTTTC+TGG 0.178619 8_1:+144717 Msa1170810:five_prime_UTR
TGCAGTGGGTTGGACAATTC+AGG 0.241231 8_1:+146143 Msa1170810:intron
ATTGGTGTGCCGGCTCAAAA+TGG 0.253270 8_1:+144532 Msa1170810:five_prime_UTR
CTTACCTTAGCTATTTCTTC+TGG 0.265683 8_1:-148715 None:intergenic
GCAAATAAACAAGATATTAA+AGG 0.268511 8_1:+148682 Msa1170810:CDS
TTCATATGACAGAGACTATC+TGG 0.268803 8_1:+148640 Msa1170810:intron
CCTTCCAATGATAGCATATT+GGG 0.270391 8_1:-149802 None:intergenic
TTGAGCTTTGAACCCTTTCA+TGG 0.314698 8_1:-149758 None:intergenic
GCCTTCCAATGATAGCATAT+TGG 0.324468 8_1:-149803 None:intergenic
AACAAACCTCTTCCTTTAGA+AGG 0.325701 8_1:-148131 None:intergenic
AGTTTAATAACATAGGCTTA+TGG 0.344484 8_1:+144633 Msa1170810:five_prime_UTR
CATAAAGTGATGCTTATTAT+AGG 0.346711 8_1:-150011 None:intergenic
AAAACTACATTGATTGGTAT+TGG 0.348087 8_1:+144708 Msa1170810:five_prime_UTR
GAAGGAAATGCGAATTCTTA+TGG 0.370357 8_1:+146046 Msa1170810:CDS
TAACCCCAATATGCTATCAT+TGG 0.371800 8_1:+149798 Msa1170810:three_prime_UTR
TTGGTCTTCTGTCTAGGAAT+GGG 0.389564 8_1:+145987 Msa1170810:exon
TTTATTTGCTAGAATTAGTA+AGG 0.393701 8_1:-148668 None:intergenic
ACTGTACATCATTTGATCAT+TGG 0.407212 8_1:+144514 Msa1170810:five_prime_UTR
TACTAAGCTTATTTACTGTA+AGG 0.411299 8_1:+149912 Msa1170810:three_prime_UTR
AAGATTGGATGATTGCAAAA+TGG 0.416311 8_1:+148098 Msa1170810:CDS
TTTGGTCTTCTGTCTAGGAA+TGG 0.417322 8_1:+145986 Msa1170810:exon
TTGCTGAAAACTACATTGAT+TGG 0.429676 8_1:+144702 Msa1170810:five_prime_UTR
GGGATTTGATTGGTTGGTCC+AGG 0.450854 8_1:+149685 Msa1170810:CDS
AACTGCGCAGGTGTTGAACT+TGG 0.453484 8_1:+149592 Msa1170810:intron
GCTTGCTTGAGGGATTTGAT+TGG 0.453614 8_1:+149675 Msa1170810:CDS
ACTGGTGAGGGCTTGCTTGA+GGG 0.457307 8_1:+149665 Msa1170810:CDS
TTGATTGACTTACCTTGGCT+TGG 0.466216 8_1:-144920 None:intergenic
GCTTGAGGGATTTGATTGGT+TGG 0.472113 8_1:+149679 Msa1170810:CDS
TAGCTATTTCTTCTGGTGCA+AGG 0.473584 8_1:-148708 None:intergenic
TGGAACATCTCAAGAGATGC+AGG 0.473806 8_1:-149832 None:intergenic
CAGTTCGGATCTGAGAAGAT+TGG 0.474805 8_1:+148083 Msa1170810:intron
ATCGTCTCATCAATTTAAGT+TGG 0.484015 8_1:-144474 None:intergenic
TTGGTGTGCCGGCTCAAAAT+GGG 0.484855 8_1:+144533 Msa1170810:five_prime_UTR
TGGGTCTTCTCAGCATCATT+CGG 0.490641 8_1:+146006 Msa1170810:CDS
TCATTTGATCATTGGTGTGC+CGG 0.491465 8_1:+144522 Msa1170810:five_prime_UTR
GCAGTGGGTTGGACAATTCA+GGG 0.493312 8_1:+146144 Msa1170810:intron
CAATCATCGACTACTCAGTC+AGG 0.494381 8_1:-144605 None:intergenic
AGCTATTTCTTCTGGTGCAA+GGG 0.494608 8_1:-148707 None:intergenic
TTGGTATTGGAGTTTCTGGT+GGG 0.497845 8_1:+144721 Msa1170810:five_prime_UTR
AGATAACCTTCTAAAGGAAG+AGG 0.504577 8_1:+148125 Msa1170810:CDS
TCTCGACACTGGATGATAGT+TGG 0.513687 8_1:+149629 Msa1170810:CDS
AAATTTGTTGTGAGAAGAAG+AGG 0.517135 8_1:-144890 None:intergenic
ACAGAGGCGGATCCACCATA+TGG 0.519124 8_1:+144750 Msa1170810:five_prime_UTR
GGAGCTAGATAACCTTCTAA+AGG 0.521958 8_1:+148119 Msa1170810:CDS
TTGAACCCTTTCATGGATGT+CGG 0.522681 8_1:-149751 None:intergenic
TGGTCGGAGTTTAATAACAT+AGG 0.524160 8_1:+144626 Msa1170810:five_prime_UTR
GAAAATTAAGAAGAAGGAGA+AGG 0.526706 8_1:+146028 Msa1170810:CDS
GATTTACTTCTGGTAGGTGA+TGG 0.526865 8_1:-146243 None:intergenic
TCGCTAGTCAAACCTAGAGC+TGG 0.530577 8_1:-144574 None:intergenic
TACAGCAACACTCAACCATA+TGG 0.532363 8_1:-144765 None:intergenic
CACTGGTGAGGGCTTGCTTG+AGG 0.534480 8_1:+149664 Msa1170810:CDS
AGCGTCATCAGTCCTACCCT+TGG 0.534533 8_1:+146206 Msa1170810:CDS
TACTAATAATATGATACTGA+GGG 0.544648 8_1:-149976 None:intergenic
CTGACTGAGTAGTCGATGAT+TGG 0.545663 8_1:+144606 Msa1170810:five_prime_UTR
CATTCGGAAAATTAAGAAGA+AGG 0.545987 8_1:+146022 Msa1170810:CDS
TCATGCCGACATCCATGAAA+GGG 0.547915 8_1:+149746 Msa1170810:three_prime_UTR
ACCTTAAAATTAATATCGTG+TGG 0.551144 8_1:+150070 Msa1170810:three_prime_UTR
CCCAATATGCTATCATTGGA+AGG 0.553661 8_1:+149802 Msa1170810:three_prime_UTR
GGTGTTGAACTTGGAAGCGA+TGG 0.561088 8_1:+149601 Msa1170810:intron
GCAATTGTTATGCAGTGGGT+TGG 0.563288 8_1:+146133 Msa1170810:intron
AGATTCTAGAGGCTATGTCC+TGG 0.564870 8_1:-149703 None:intergenic
ATAATATGATACTGAGGGGA+GGG 0.569502 8_1:-149971 None:intergenic
CTCATGCCGACATCCATGAA+AGG 0.575343 8_1:+149745 Msa1170810:three_prime_UTR
CTGAGTAGTCGATGATTGGT+CGG 0.579264 8_1:+144610 Msa1170810:five_prime_UTR
CTGTAGTGCATACACTGGTG+AGG 0.580704 8_1:+149652 Msa1170810:CDS
ATTGGTATTGGAGTTTCTGG+TGG 0.583881 8_1:+144720 Msa1170810:five_prime_UTR
TTACTAATAATATGATACTG+AGG 0.586538 8_1:-149977 None:intergenic
TGGTGGGTGTCTTACAGAGG+CGG 0.596070 8_1:+144737 Msa1170810:five_prime_UTR
TGCACCAGAAGAAATAGCTA+AGG 0.599602 8_1:+148711 Msa1170810:CDS
TGTAGTGCATACACTGGTGA+GGG 0.600154 8_1:+149653 Msa1170810:CDS
TTGATGTTGAATCCAAGGGT+AGG 0.603177 8_1:-146218 None:intergenic
TTCTGGTGGGTGTCTTACAG+AGG 0.604037 8_1:+144734 Msa1170810:five_prime_UTR
CGATGGATAAATCTCGACAC+TGG 0.617621 8_1:+149618 Msa1170810:CDS
AATTTGTTGTGAGAAGAAGA+GGG 0.625545 8_1:-144889 None:intergenic
ATTTGTTGTGAGAAGAAGAG+GGG 0.625598 8_1:-144888 None:intergenic
AATAATATGATACTGAGGGG+AGG 0.630389 8_1:-149972 None:intergenic
AGAGAAGATTTACTTCTGGT+AGG 0.636626 8_1:-146249 None:intergenic
GTCGAGCAAGTAGATTCTAG+AGG 0.639725 8_1:-149714 None:intergenic
AATTGGGCAATAATCTAGTG+TGG 0.645527 8_1:-144788 None:intergenic
AGCAACACTCAACCATATGG+TGG 0.646214 8_1:-144762 None:intergenic
GAAAGAGAGAACTGAAGACA+AGG 0.647272 8_1:-144837 None:intergenic
CTTCCAATGATAGCATATTG+GGG 0.655001 8_1:-149801 None:intergenic
ACTAATAATATGATACTGAG+GGG 0.666851 8_1:-149975 None:intergenic
GGAACATCTCAAGAGATGCA+GGG 0.675242 8_1:-149831 None:intergenic
AATCATCGACTACTCAGTCA+GGG 0.690914 8_1:-144604 None:intergenic
GTTGGCTGTAGTGCATACAC+TGG 0.701547 8_1:+149647 Msa1170810:CDS
ACATCTCAAGAGATGCAGGG+AGG 0.746739 8_1:-149828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATCTAACAT+TGG + chr8_1:147268-147287 Msa1170810:intron 10.0%
!!! TAAATATATTACTTTTGTTT+TGG + chr8_1:147842-147861 Msa1170810:intron 10.0%
!! ATAAATTATAAACCCTTTAA+AGG + chr8_1:145270-145289 Msa1170810:intron 15.0%
!! CTTACTTTATCAAAATTAAA+GGG + chr8_1:145467-145486 Msa1170810:intron 15.0%
!!! TAATATACTTTTGTTTTATG+AGG + chr8_1:146458-146477 Msa1170810:intron 15.0%
!!! TTTTTTTTCTTTAAATGCTT+TGG + chr8_1:146538-146557 Msa1170810:intron 15.0%
!!! TTAATTCTTTTTAACGAAAA+TGG - chr8_1:147250-147269 None:intergenic 15.0%
!! AATCAATAGATCAAATAAAA+GGG - chr8_1:148257-148276 None:intergenic 15.0%
!! TAATCAATAGATCAAATAAA+AGG - chr8_1:148258-148277 None:intergenic 15.0%
!!! TTCATTTTTTTGACAATATA+TGG + chr8_1:149267-149286 Msa1170810:intron 15.0%
!! CAAATAAATAAATTGAAAGT+TGG - chr8_1:149375-149394 None:intergenic 15.0%
!!! CCTTTAATTTTGATAAAGTA+AGG - chr8_1:145469-145488 None:intergenic 20.0%
!! CCTTACTTTATCAAAATTAA+AGG + chr8_1:145466-145485 Msa1170810:intron 20.0%
!! TAGTCATATATACTGAAATT+GGG - chr8_1:145532-145551 None:intergenic 20.0%
!! ATAGTCATATATACTGAAAT+TGG - chr8_1:145533-145552 None:intergenic 20.0%
!!! GTGTTTTTCATCATAATTTT+GGG - chr8_1:145897-145916 None:intergenic 20.0%
!!! AGTGTTTTTCATCATAATTT+TGG - chr8_1:145898-145917 None:intergenic 20.0%
!! TACCAATATAGAAAAGAAAA+GGG - chr8_1:145937-145956 None:intergenic 20.0%
!! TTACCAATATAGAAAAGAAA+AGG - chr8_1:145938-145957 None:intergenic 20.0%
!!! AAAAAGCAAATTGATTTATC+AGG + chr8_1:145962-145981 Msa1170810:intron 20.0%
!! TAATGTAGTAAAATCTAGAA+TGG - chr8_1:146099-146118 None:intergenic 20.0%
!! AGAAAAATAAAAATGGACAT+CGG - chr8_1:146324-146343 None:intergenic 20.0%
!!! TATGTTAAGTCATCATTTTT+AGG + chr8_1:146355-146374 Msa1170810:intron 20.0%
!!! TTCTGTTTTTCTGATTTTTT+TGG + chr8_1:147146-147165 Msa1170810:intron 20.0%
!!! TCTGTTTTTCTGATTTTTTT+GGG + chr8_1:147147-147166 Msa1170810:intron 20.0%
!!! GATATTCAGTAATTTTCTTA+AGG + chr8_1:148216-148235 Msa1170810:intron 20.0%
!! AAAATAACTTAAGATTGCTT+TGG - chr8_1:148472-148491 None:intergenic 20.0%
!! ACTTCTCATTGTTAATAATT+TGG + chr8_1:148543-148562 Msa1170810:intron 20.0%
!! CTTCTCATTGTTAATAATTT+GGG + chr8_1:148544-148563 Msa1170810:intron 20.0%
!!! TTTATTTGCTAGAATTAGTA+AGG - chr8_1:148671-148690 None:intergenic 20.0%
!! GCAAATAAACAAGATATTAA+AGG + chr8_1:148682-148701 Msa1170810:CDS 20.0%
!!! AGATGTTTTTATTCAAGATA+CGG + chr8_1:148999-149018 Msa1170810:intron 20.0%
!! ATGTACATAAAAAAATACGT+AGG + chr8_1:149116-149135 Msa1170810:intron 20.0%
!! AAATGATTGAATAGAAAAAG+AGG - chr8_1:149874-149893 None:intergenic 20.0%
!! TACTAATAATATGATACTGA+GGG - chr8_1:149979-149998 None:intergenic 20.0%
!! TTACTAATAATATGATACTG+AGG - chr8_1:149980-149999 None:intergenic 20.0%
! AGTTTAATAACATAGGCTTA+TGG + chr8_1:144633-144652 Msa1170810:five_prime_UTR 25.0%
!! AAAACTACATTGATTGGTAT+TGG + chr8_1:144708-144727 Msa1170810:five_prime_UTR 25.0%
! CGTATGTGTGAAAAAAAATT+GGG - chr8_1:144807-144826 None:intergenic 25.0%
! TCGTATGTGTGAAAAAAAAT+TGG - chr8_1:144808-144827 None:intergenic 25.0%
! TGTTAATTCGAAAATTGTGT+TGG + chr8_1:145008-145027 Msa1170810:intron 25.0%
! CTAACAAGTTTGAATGATTA+AGG - chr8_1:145053-145072 None:intergenic 25.0%
!! CTTAATCATTCAAACTTGTT+AGG + chr8_1:145051-145070 Msa1170810:intron 25.0%
! AACCTATACAAACAGTTAAA+GGG - chr8_1:145116-145135 None:intergenic 25.0%
!! ATTATTGAGCAGTTTTACTT+CGG - chr8_1:145252-145271 None:intergenic 25.0%
!!! CTCAAAGTTTTTTATGTCAT+TGG - chr8_1:145421-145440 None:intergenic 25.0%
! CAATGACATAAAAAACTTTG+AGG + chr8_1:145419-145438 Msa1170810:intron 25.0%
! GATTCAAAAAAGTAACTTCT+TGG + chr8_1:145493-145512 Msa1170810:intron 25.0%
! ATGACTATGACAAGAAAAAT+AGG + chr8_1:145545-145564 Msa1170810:intron 25.0%
! ATTGTGAGATATATGCAAAT+AGG - chr8_1:145654-145673 None:intergenic 25.0%
!! TCACAATAGAATGTTGATAA+TGG + chr8_1:145667-145686 Msa1170810:intron 25.0%
! ACCAATATAGAAAAGAAAAG+GGG - chr8_1:145936-145955 None:intergenic 25.0%
!!! CAAATTGATTTATCAGGTTT+TGG + chr8_1:145968-145987 Msa1170810:intron 25.0%
!!! ACAATCGTTTTGAAGATTAA+CGG + chr8_1:146173-146192 Msa1170810:CDS 25.0%
!! TAAAATTAGAGTGATTTGTG+AGG - chr8_1:146285-146304 None:intergenic 25.0%
! CCAAACGAGAAAAATAAAAA+TGG - chr8_1:146331-146350 None:intergenic 25.0%
!!! CCATTTTTATTTTTCTCGTT+TGG + chr8_1:146328-146347 Msa1170810:intron 25.0%
!!! AGTCATCATTTTTAGGAATT+AGG + chr8_1:146362-146381 Msa1170810:intron 25.0%
! TGTGATATTGCTTCTTAATT+TGG + chr8_1:146488-146507 Msa1170810:intron 25.0%
!! TATTGCTTCTTAATTTGGTA+CGG + chr8_1:146493-146512 Msa1170810:intron 25.0%
! AAATGGTCAAGATTACAATT+GGG - chr8_1:147233-147252 None:intergenic 25.0%
! AAAATGGTCAAGATTACAAT+TGG - chr8_1:147234-147253 None:intergenic 25.0%
!!! GGCTTTATAATAAAGTTTTG+CGG + chr8_1:147572-147591 Msa1170810:intron 25.0%
!! TCGAGTCTTTTATGTTTAAT+TGG + chr8_1:147795-147814 Msa1170810:intron 25.0%
!! GCTTTTATCTAAATTGACAA+TGG + chr8_1:147958-147977 Msa1170810:intron 25.0%
! TACTTGTCAACATAATAGAT+TGG + chr8_1:148170-148189 Msa1170810:intron 25.0%
! TACATCTAAATACTTAACTG+AGG + chr8_1:148194-148213 Msa1170810:intron 25.0%
!!! ATTCCTAAAGCATTCATTTT+AGG - chr8_1:148330-148349 None:intergenic 25.0%
! TAAATGCACAAGTTATCATA+AGG - chr8_1:148417-148436 None:intergenic 25.0%
!! AAGGTAAGCTTAATTTTATC+TGG + chr8_1:148730-148749 Msa1170810:intron 25.0%
!! AGGTAAGCTTAATTTTATCT+GGG + chr8_1:148731-148750 Msa1170810:intron 25.0%
! AAACATAATATGCTGAGAAT+TGG + chr8_1:148793-148812 Msa1170810:intron 25.0%
! GAAGATAATTATGACTTATG+AGG - chr8_1:148877-148896 None:intergenic 25.0%
! TTATCTTAATAACTACTCGT+CGG + chr8_1:148911-148930 Msa1170810:intron 25.0%
! CTATTAAACAAACCTATTTG+TGG + chr8_1:148954-148973 Msa1170810:intron 25.0%
! TGATGTAATAACACATACAT+AGG + chr8_1:149204-149223 Msa1170810:intron 25.0%
! TACTAAGCTTATTTACTGTA+AGG + chr8_1:149912-149931 Msa1170810:three_prime_UTR 25.0%
!! TTTTTATGTGAATATGAAGC+TGG + chr8_1:149935-149954 Msa1170810:three_prime_UTR 25.0%
!! TTTTATGTGAATATGAAGCT+GGG + chr8_1:149936-149955 Msa1170810:three_prime_UTR 25.0%
! ACTAATAATATGATACTGAG+GGG - chr8_1:149978-149997 None:intergenic 25.0%
! CATAAAGTGATGCTTATTAT+AGG - chr8_1:150014-150033 None:intergenic 25.0%
ATCGTCTCATCAATTTAAGT+TGG - chr8_1:144477-144496 None:intergenic 30.0%
ACTGTACATCATTTGATCAT+TGG + chr8_1:144514-144533 Msa1170810:five_prime_UTR 30.0%
! ACTCTAGTTAGGTTTCATTT+TGG + chr8_1:144656-144675 Msa1170810:intron 30.0%
TTGCTGAAAACTACATTGAT+TGG + chr8_1:144702-144721 Msa1170810:five_prime_UTR 30.0%
!! AATTTGTTGTGAGAAGAAGA+GGG - chr8_1:144892-144911 None:intergenic 30.0%
!! AAATTTGTTGTGAGAAGAAG+AGG - chr8_1:144893-144912 None:intergenic 30.0%
CTAAAACAAGTGATTGGAAA+CGG - chr8_1:144963-144982 None:intergenic 30.0%
!!! GTTTCCAATCACTTGTTTTA+GGG + chr8_1:144962-144981 Msa1170810:intron 30.0%
!!! GTTTTAGGGTTTCAGAATTA+AGG + chr8_1:144976-144995 Msa1170810:intron 30.0%
!! ATCATTCAAACTTGTTAGGT+AGG + chr8_1:145055-145074 Msa1170810:intron 30.0%
GAACCTATACAAACAGTTAA+AGG - chr8_1:145117-145136 None:intergenic 30.0%
! TAATACTCTGCTGTATTTTG+TGG + chr8_1:145137-145156 Msa1170810:intron 30.0%
CATGTGCATTTATTTACAGT+TGG - chr8_1:145183-145202 None:intergenic 30.0%
TACAATGTTGAGAGTAATGT+AGG + chr8_1:145222-145241 Msa1170810:intron 30.0%
! ATAAACCCTTTAAAGGTTTG+AGG + chr8_1:145277-145296 Msa1170810:intron 30.0%
AAAACTGAATTCATCGAAGA+CGG - chr8_1:145375-145394 None:intergenic 30.0%
AAAAAGTAACTTCTTGGCTT+TGG + chr8_1:145499-145518 Msa1170810:intron 30.0%
AGAAAAATAGGTAAGCACAA+TGG + chr8_1:145557-145576 Msa1170810:intron 30.0%
!! CAATAGAATGTTGATAATGG+TGG + chr8_1:145670-145689 Msa1170810:intron 30.0%
! ATAATGGTGGAATTGTGTTA+TGG + chr8_1:145683-145702 Msa1170810:intron 30.0%
CCAATATAGAAAAGAAAAGG+GGG - chr8_1:145935-145954 None:intergenic 30.0%
CATTCGGAAAATTAAGAAGA+AGG + chr8_1:146022-146041 Msa1170810:CDS 30.0%
GAAAATTAAGAAGAAGGAGA+AGG + chr8_1:146028-146047 Msa1170810:CDS 30.0%
! TGTAGTAAAATCTAGAATGG+TGG - chr8_1:146096-146115 None:intergenic 30.0%
!!! CAATCGTTTTGAAGATTAAC+GGG + chr8_1:146174-146193 Msa1170810:CDS 30.0%
!!! AATCGTTTTGAAGATTAACG+GGG + chr8_1:146175-146194 Msa1170810:CDS 30.0%
ATGAAGAGAAGATTTACTTC+TGG - chr8_1:146256-146275 None:intergenic 30.0%
! TGTGAATAAGAACATGCTTT+TGG + chr8_1:146388-146407 Msa1170810:intron 30.0%
TGCATATTGTGTAATGGTAA+AGG - chr8_1:146584-146603 None:intergenic 30.0%
TGATCTTGCATATTGTGTAA+TGG - chr8_1:146590-146609 None:intergenic 30.0%
TAAGAAACTCGGTAAAACAA+AGG - chr8_1:146629-146648 None:intergenic 30.0%
!! TTGTTTTACCGAGTTTCTTA+CGG + chr8_1:146629-146648 Msa1170810:intron 30.0%
! TGAGTAACAAAAAAGTGTGT+CGG + chr8_1:146743-146762 Msa1170810:intron 30.0%
ATCTTCAATAATGTGACCAA+AGG + chr8_1:146826-146845 Msa1170810:intron 30.0%
TCTTCAATAATGTGACCAAA+GGG + chr8_1:146827-146846 Msa1170810:intron 30.0%
ATTTGTAGAAAAGACACATC+GGG - chr8_1:146918-146937 None:intergenic 30.0%
CATTTGTAGAAAAGACACAT+CGG - chr8_1:146919-146938 None:intergenic 30.0%
!!! GTTTTTCTGATTTTTTTGGG+TGG + chr8_1:147150-147169 Msa1170810:intron 30.0%
!!! CACTAAATGTCATTTTTCGT+AGG - chr8_1:147333-147352 None:intergenic 30.0%
TCAAATATTCGTAGGGATAA+GGG - chr8_1:147415-147434 None:intergenic 30.0%
! TATGTTTAAGCTTTGTGACT+AGG + chr8_1:147716-147735 Msa1170810:intron 30.0%
TTTGGTATGATTCTTCAATC+TGG + chr8_1:147860-147879 Msa1170810:intron 30.0%
TTGGTATGATTCTTCAATCT+GGG + chr8_1:147861-147880 Msa1170810:intron 30.0%
CAATTTAGATAAAAGCCTCA+AGG - chr8_1:147954-147973 None:intergenic 30.0%
TTATCTAAATTGACAATGGC+AGG + chr8_1:147962-147981 Msa1170810:intron 30.0%
!!! AGTAAGATCGAATGGTTTTT+TGG - chr8_1:148017-148036 None:intergenic 30.0%
AAAAAACCATTCGATCTTAC+TGG + chr8_1:148016-148035 Msa1170810:intron 30.0%
AAGATTGGATGATTGCAAAA+TGG + chr8_1:148098-148117 Msa1170810:CDS 30.0%
! AGAGGTTTGTTCAATACAAA+TGG + chr8_1:148143-148162 Msa1170810:intron 30.0%
TTGCCTAAAATGAATGCTTT+AGG + chr8_1:148324-148343 Msa1170810:intron 30.0%
TAAAAACTATTTCCCCAACA+AGG - chr8_1:148440-148459 None:intergenic 30.0%
!! GAAGTATTTATAGCTGGTTT+TGG - chr8_1:148528-148547 None:intergenic 30.0%
!! CAATGAGAAGTATTTATAGC+TGG - chr8_1:148534-148553 None:intergenic 30.0%
ATGATTACTCTGTTCTTCTT+TGG + chr8_1:148575-148594 Msa1170810:intron 30.0%
!! TCTAGTTAAAGAGTATCAAG+TGG - chr8_1:148836-148855 None:intergenic 30.0%
CTTGATACTCTTTAACTAGA+CGG + chr8_1:148836-148855 Msa1170810:intron 30.0%
TTGATACTCTTTAACTAGAC+GGG + chr8_1:148837-148856 Msa1170810:intron 30.0%
TAGAAAGCAACATTTCCTAT+AGG - chr8_1:148937-148956 None:intergenic 30.0%
TTAAACAAACCTATTTGTGG+CGG + chr8_1:148957-148976 Msa1170810:intron 30.0%
GACTACATATAAAATGATGC+AGG + chr8_1:149051-149070 Msa1170810:intron 30.0%
CATATAAAATGATGCAGGTT+AGG + chr8_1:149056-149075 Msa1170810:intron 30.0%
TAACAAAGAGTCGTATCTAA+AGG - chr8_1:149084-149103 None:intergenic 30.0%
AAATTATACCTGAACCACAA+TGG + chr8_1:149501-149520 Msa1170810:intron 30.0%
AATTATACCTGAACCACAAT+GGG + chr8_1:149502-149521 Msa1170810:intron 30.0%
TGATTGAATAGAAAAAGAGG+AGG - chr8_1:149871-149890 None:intergenic 30.0%
! ATATATAGCCCATTTTGAGC+CGG - chr8_1:144544-144563 None:intergenic 35.0%
AAACCTAGAGCTGGAAAAAA+GGG - chr8_1:144568-144587 None:intergenic 35.0%
TGGTCGGAGTTTAATAACAT+AGG + chr8_1:144626-144645 Msa1170810:five_prime_UTR 35.0%
! TTGATTGGTATTGGAGTTTC+TGG + chr8_1:144717-144736 Msa1170810:five_prime_UTR 35.0%
AATTGGGCAATAATCTAGTG+TGG - chr8_1:144791-144810 None:intergenic 35.0%
!! ATTTGTTGTGAGAAGAAGAG+GGG - chr8_1:144891-144910 None:intergenic 35.0%
! AATTTTTCTAAGCCAAGCCA+AGG + chr8_1:144908-144927 Msa1170810:five_prime_UTR 35.0%
! GAGAATTGATTGACTTACCT+TGG - chr8_1:144928-144947 None:intergenic 35.0%
!! CGTTTCCAATCACTTGTTTT+AGG + chr8_1:144961-144980 Msa1170810:intron 35.0%
GAAACCCTAAAACAAGTGAT+TGG - chr8_1:144969-144988 None:intergenic 35.0%
!! AAACAGTTAAAGGGCATTCA+CGG - chr8_1:145107-145126 None:intergenic 35.0%
TGCCCTTTAACTGTTTGTAT+AGG + chr8_1:145111-145130 Msa1170810:intron 35.0%
! TTTTGTGGTTACTGCTGTAT+AGG + chr8_1:145152-145171 Msa1170810:intron 35.0%
TCACTCCTCAAACCTTTAAA+GGG - chr8_1:145285-145304 None:intergenic 35.0%
TTCACTCCTCAAACCTTTAA+AGG - chr8_1:145286-145305 None:intergenic 35.0%
ATGTGTGATGTTTCAACAGT+TGG - chr8_1:145323-145342 None:intergenic 35.0%
ATAGGTAAGCACAATGGTTA+AGG + chr8_1:145563-145582 Msa1170810:intron 35.0%
! CCCCCTTTTCTTTTCTATAT+TGG + chr8_1:145932-145951 Msa1170810:intron 35.0%
GAAGGAAATGCGAATTCTTA+TGG + chr8_1:146046-146065 Msa1170810:CDS 35.0%
TAGTTGCAATTGTTATGCAG+TGG + chr8_1:146128-146147 Msa1170810:intron 35.0%
AGTTGCAATTGTTATGCAGT+GGG + chr8_1:146129-146148 Msa1170810:intron 35.0%
!! GGTTTTGATGTTGAATCCAA+GGG - chr8_1:146225-146244 None:intergenic 35.0%
!!! TGGTTTTGATGTTGAATCCA+AGG - chr8_1:146226-146245 None:intergenic 35.0%
AGAGAAGATTTACTTCTGGT+AGG - chr8_1:146252-146271 None:intergenic 35.0%
! TTCTTAATTTGGTACGGTTG+TGG + chr8_1:146499-146518 Msa1170810:intron 35.0%
AACAATGACCGTAAGAAACT+CGG - chr8_1:146640-146659 None:intergenic 35.0%
GAGTGAAATCGCTAAATCAT+GGG - chr8_1:146691-146710 None:intergenic 35.0%
TGAGTGAAATCGCTAAATCA+TGG - chr8_1:146692-146711 None:intergenic 35.0%
TCAGGATTCTATTCACAATC+CGG - chr8_1:146726-146745 None:intergenic 35.0%
!!! GACACACTTTTTTGTTACTC+AGG - chr8_1:146744-146763 None:intergenic 35.0%
! GAGTAACAAAAAAGTGTGTC+GGG + chr8_1:146744-146763 Msa1170810:intron 35.0%
! AGTAACAAAAAAGTGTGTCG+GGG + chr8_1:146745-146764 Msa1170810:intron 35.0%
TTATTTGGCATGCTACCATT+TGG + chr8_1:146776-146795 Msa1170810:intron 35.0%
TATTTGGCATGCTACCATTT+GGG + chr8_1:146777-146796 Msa1170810:intron 35.0%
CTTCAATAATGTGACCAAAG+GGG + chr8_1:146828-146847 Msa1170810:intron 35.0%
! CGATGTGTCTTTTCTACAAA+TGG + chr8_1:146917-146936 Msa1170810:intron 35.0%
! GTCTTTTCTACAAATGGTGT+TGG + chr8_1:146923-146942 Msa1170810:intron 35.0%
ATCCTAGGGATTGTATGTTA+AGG + chr8_1:146947-146966 Msa1170810:intron 35.0%
TACCTTAACATACAATCCCT+AGG - chr8_1:146952-146971 None:intergenic 35.0%
TGTATGTTAAGGTAGATACC+TGG + chr8_1:146958-146977 Msa1170810:intron 35.0%
GTATGTTAAGGTAGATACCT+GGG + chr8_1:146959-146978 Msa1170810:intron 35.0%
TATGTTAAGGTAGATACCTG+GGG + chr8_1:146960-146979 Msa1170810:intron 35.0%
!! GTTTTCGGATCCTTTTGTTT+TGG + chr8_1:147003-147022 Msa1170810:intron 35.0%
AAAACAGAAACAGATGCACA+AGG - chr8_1:147135-147154 None:intergenic 35.0%
!!! TCTGATTTTTTTGGGTGGTT+TGG + chr8_1:147155-147174 Msa1170810:intron 35.0%
GTAAGTGTCTATTTGTCTGT+AGG - chr8_1:147311-147330 None:intergenic 35.0%
! GGATAAGGGTATAATTGTTG+GGG - chr8_1:147401-147420 None:intergenic 35.0%
! GGGATAAGGGTATAATTGTT+GGG - chr8_1:147402-147421 None:intergenic 35.0%
! AGGGATAAGGGTATAATTGT+TGG - chr8_1:147403-147422 None:intergenic 35.0%
CTCAAATATTCGTAGGGATA+AGG - chr8_1:147416-147435 None:intergenic 35.0%
AAACAACAACACAGGAGAAA+AGG - chr8_1:147515-147534 None:intergenic 35.0%
! CGTTTTCATCATATTTCGCA+GGG - chr8_1:147635-147654 None:intergenic 35.0%
! ACGTTTTCATCATATTTCGC+AGG - chr8_1:147636-147655 None:intergenic 35.0%
! TCTTGATTCTGAAAACCTTG+AGG + chr8_1:147936-147955 Msa1170810:intron 35.0%
CAGGTACACTCTAAACATAT+GGG + chr8_1:147981-148000 Msa1170810:intron 35.0%
ACTCTAAACATATGGGATGT+TGG + chr8_1:147988-148007 Msa1170810:intron 35.0%
AACTACTTTGAGCAAACAGA+TGG + chr8_1:148042-148061 Msa1170810:intron 35.0%
! AGATAACCTTCTAAAGGAAG+AGG + chr8_1:148125-148144 Msa1170810:CDS 35.0%
AACAAACCTCTTCCTTTAGA+AGG - chr8_1:148134-148153 None:intergenic 35.0%
! TTTTAGGCAACTACTATGCT+TGG - chr8_1:148314-148333 None:intergenic 35.0%
GGAATATTTACCAATGCCTT+CGG + chr8_1:148345-148364 Msa1170810:intron 35.0%
GCACAAGTTATCATAAGGAA+AGG - chr8_1:148412-148431 None:intergenic 35.0%
AACTTGTGCATTTACCTTGT+TGG + chr8_1:148423-148442 Msa1170810:intron 35.0%
ACTTGTGCATTTACCTTGTT+GGG + chr8_1:148424-148443 Msa1170810:intron 35.0%
TTCATATGACAGAGACTATC+TGG + chr8_1:148640-148659 Msa1170810:intron 35.0%
!! CTTACCTTAGCTATTTCTTC+TGG - chr8_1:148718-148737 None:intergenic 35.0%
! ATTTTATCTGGGCATGATCT+TGG + chr8_1:148742-148761 Msa1170810:intron 35.0%
GTCATAATTATCTTCCTGCA+AGG + chr8_1:148882-148901 Msa1170810:intron 35.0%
CATACATACCACAAAGAACA+TGG - chr8_1:149032-149051 None:intergenic 35.0%
GTAGACAATCTCATCTAACA+AGG - chr8_1:149173-149192 None:intergenic 35.0%
TTGACAATATATGGAAACCC+TGG + chr8_1:149276-149295 Msa1170810:intron 35.0%
ACTTCTCTTGAAGTTATCCA+GGG - chr8_1:149296-149315 None:intergenic 35.0%
TCTGTTGAAACATTACTGCA+AGG - chr8_1:149331-149350 None:intergenic 35.0%
!! TTAGCTGTTTTCGTGAAACA+AGG + chr8_1:149433-149452 Msa1170810:intron 35.0%
!! TAGCTGTTTTCGTGAAACAA+GGG + chr8_1:149434-149453 Msa1170810:intron 35.0%
! ATAACTAGTTTGACCCATTG+TGG - chr8_1:149518-149537 None:intergenic 35.0%
GGTCAAACTAGTTATCTCTT+GGG + chr8_1:149523-149542 Msa1170810:intron 35.0%
TAACCCCAATATGCTATCAT+TGG + chr8_1:149798-149817 Msa1170810:three_prime_UTR 35.0%
CTTCCAATGATAGCATATTG+GGG - chr8_1:149804-149823 None:intergenic 35.0%
CCTTCCAATGATAGCATATT+GGG - chr8_1:149805-149824 None:intergenic 35.0%
ATAATATGATACTGAGGGGA+GGG - chr8_1:149974-149993 None:intergenic 35.0%
AATAATATGATACTGAGGGG+AGG - chr8_1:149975-149994 None:intergenic 35.0%
TCATTTGATCATTGGTGTGC+CGG + chr8_1:144522-144541 Msa1170810:five_prime_UTR 40.0%
AACCTAGAGCTGGAAAAAAG+GGG - chr8_1:144567-144586 None:intergenic 40.0%
CAAACCTAGAGCTGGAAAAA+AGG - chr8_1:144569-144588 None:intergenic 40.0%
! AATCATCGACTACTCAGTCA+GGG - chr8_1:144607-144626 None:intergenic 40.0%
TAGGCTTATGGACTCTAGTT+AGG + chr8_1:144645-144664 Msa1170810:intron 40.0%
! ATTGGTATTGGAGTTTCTGG+TGG + chr8_1:144720-144739 Msa1170810:five_prime_UTR 40.0%
!! TTGGTATTGGAGTTTCTGGT+GGG + chr8_1:144721-144740 Msa1170810:five_prime_UTR 40.0%
TACAGCAACACTCAACCATA+TGG - chr8_1:144768-144787 None:intergenic 40.0%
GAAAGAGAGAACTGAAGACA+AGG - chr8_1:144840-144859 None:intergenic 40.0%
! TTGATTGACTTACCTTGGCT+TGG - chr8_1:144923-144942 None:intergenic 40.0%
TTGGAAACGGAAGGAGAAAT+TGG - chr8_1:144950-144969 None:intergenic 40.0%
AACAAGTGATTGGAAACGGA+AGG - chr8_1:144959-144978 None:intergenic 40.0%
GTTTGAGGAGTGAACTATGT+AGG + chr8_1:145292-145311 Msa1170810:intron 40.0%
TTATGTAGAATCGTGCATCG+TGG + chr8_1:145749-145768 Msa1170810:intron 40.0%
CAGATCTAGACATTCGACAT+TGG - chr8_1:145859-145878 None:intergenic 40.0%
GAAAAGGGGGAAAAAAACAG+TGG - chr8_1:145922-145941 None:intergenic 40.0%
! TTTGGTCTTCTGTCTAGGAA+TGG + chr8_1:145986-146005 Msa1170810:exon 40.0%
! TTGGTCTTCTGTCTAGGAAT+GGG + chr8_1:145987-146006 Msa1170810:exon 40.0%
TTGATGTTGAATCCAAGGGT+AGG - chr8_1:146221-146240 None:intergenic 40.0%
GATTTACTTCTGGTAGGTGA+TGG - chr8_1:146246-146265 None:intergenic 40.0%
ATTCACAATCCGGATCGTTA+GGG - chr8_1:146716-146735 None:intergenic 40.0%
TATTCACAATCCGGATCGTT+AGG - chr8_1:146717-146736 None:intergenic 40.0%
!! AAAAAGTGTGTCGGGGTTTT+TGG + chr8_1:146752-146771 Msa1170810:intron 40.0%
! AGCTTTTCACAACACCCAAA+TGG - chr8_1:146794-146813 None:intergenic 40.0%
TAATGTGACCAAAGGGGTTA+AGG + chr8_1:146834-146853 Msa1170810:intron 40.0%
! ACAAATGGTGTTGGAATCCT+AGG + chr8_1:146932-146951 Msa1170810:intron 40.0%
! CAAATGGTGTTGGAATCCTA+GGG + chr8_1:146933-146952 Msa1170810:intron 40.0%
ATGTTAAGGTAGATACCTGG+GGG + chr8_1:146961-146980 Msa1170810:intron 40.0%
!!! TTTTGGGGAGTTGCTGTTTT+CGG + chr8_1:146988-147007 Msa1170810:intron 40.0%
!!! TTTTTTGGGTGGTTTGGCTT+AGG + chr8_1:147161-147180 Msa1170810:intron 40.0%
CAATTGGGCCTCTAAATTGT+CGG - chr8_1:147218-147237 None:intergenic 40.0%
GGCTCTTTCACTTCTTGTTA+GGG + chr8_1:147546-147565 Msa1170810:intron 40.0%
GCTCTTTCACTTCTTGTTAG+GGG + chr8_1:147547-147566 Msa1170810:intron 40.0%
TTTCACTTCTTGTTAGGGGT+TGG + chr8_1:147551-147570 Msa1170810:intron 40.0%
AACATAAACGACTCAAAGCC+AGG - chr8_1:147702-147721 None:intergenic 40.0%
ATCTTGCATCAGATCGAATG+GGG - chr8_1:147917-147936 None:intergenic 40.0%
GATCTTGCATCAGATCGAAT+GGG - chr8_1:147918-147937 None:intergenic 40.0%
AGATCTTGCATCAGATCGAA+TGG - chr8_1:147919-147938 None:intergenic 40.0%
GCAGGTACACTCTAAACATA+TGG + chr8_1:147980-147999 Msa1170810:intron 40.0%
CTAAACATATGGGATGTTGG+AGG + chr8_1:147991-148010 Msa1170810:intron 40.0%
GTTTCTCCAGTAAGATCGAA+TGG - chr8_1:148025-148044 None:intergenic 40.0%
CTTTGAGCAAACAGATGGTT+TGG + chr8_1:148047-148066 Msa1170810:intron 40.0%
!! AGCAAACAGATGGTTTGGTT+TGG + chr8_1:148052-148071 Msa1170810:intron 40.0%
!! GCAAACAGATGGTTTGGTTT+GGG + chr8_1:148053-148072 Msa1170810:intron 40.0%
GGAGCTAGATAACCTTCTAA+AGG + chr8_1:148119-148138 Msa1170810:CDS 40.0%
GCTTGGATACATTAGCAAAG+AGG - chr8_1:148297-148316 None:intergenic 40.0%
ATATTTACCAATGCCTTCGG+TGG + chr8_1:148348-148367 Msa1170810:intron 40.0%
GAAAGGAAAGTAGCTGCTAA+CGG - chr8_1:148395-148414 None:intergenic 40.0%
CTTGTGCATTTACCTTGTTG+GGG + chr8_1:148425-148444 Msa1170810:intron 40.0%
!! AGCTATTTCTTCTGGTGCAA+GGG - chr8_1:148710-148729 None:intergenic 40.0%
!! TAGCTATTTCTTCTGGTGCA+AGG - chr8_1:148711-148730 None:intergenic 40.0%
TGCACCAGAAGAAATAGCTA+AGG + chr8_1:148711-148730 Msa1170810:CDS 40.0%
GATTGTTTACCGCCACAAAT+AGG - chr8_1:148969-148988 None:intergenic 40.0%
GCTGTTAACCATGTTCTTTG+TGG + chr8_1:149021-149040 Msa1170810:intron 40.0%
CACTTCTCTTGAAGTTATCC+AGG - chr8_1:149297-149316 None:intergenic 40.0%
GGGTCAAACTAGTTATCTCT+TGG + chr8_1:149522-149541 Msa1170810:intron 40.0%
TTGAACCCTTTCATGGATGT+CGG - chr8_1:149754-149773 None:intergenic 40.0%
!! TTGAGCTTTGAACCCTTTCA+TGG - chr8_1:149761-149780 None:intergenic 40.0%
CCCAATATGCTATCATTGGA+AGG + chr8_1:149802-149821 Msa1170810:three_prime_UTR 40.0%
GCCTTCCAATGATAGCATAT+TGG - chr8_1:149806-149825 None:intergenic 40.0%
GAGGAGGTAAAAATTCGATG+TGG - chr8_1:149855-149874 None:intergenic 40.0%
!!! ATCCCCTTTTTTCCAGCTCT+AGG + chr8_1:144562-144581 Msa1170810:five_prime_UTR 45.0%
! CAATCATCGACTACTCAGTC+AGG - chr8_1:144608-144627 None:intergenic 45.0%
CTGACTGAGTAGTCGATGAT+TGG + chr8_1:144606-144625 Msa1170810:five_prime_UTR 45.0%
CTGAGTAGTCGATGATTGGT+CGG + chr8_1:144610-144629 Msa1170810:five_prime_UTR 45.0%
AGCAACACTCAACCATATGG+TGG - chr8_1:144765-144784 None:intergenic 45.0%
!! AGTAACTTCTTGGCTTTGGC+AGG + chr8_1:145503-145522 Msa1170810:intron 45.0%
TAGAAATTACCCATGCCCGA+GGG + chr8_1:145588-145607 Msa1170810:intron 45.0%
TAGGCAAATACGACTGCACT+TGG - chr8_1:145635-145654 None:intergenic 45.0%
CTAGACATTCGACATTGGTG+CGG - chr8_1:145854-145873 None:intergenic 45.0%
!! CAGGTTTTGGTCTTCTGTCT+AGG + chr8_1:145981-146000 Msa1170810:intron 45.0%
TGGGTCTTCTCAGCATCATT+CGG + chr8_1:146006-146025 Msa1170810:CDS 45.0%
! CTAGAATGGTGGAGAGAACA+GGG - chr8_1:146085-146104 None:intergenic 45.0%
! TCTAGAATGGTGGAGAGAAC+AGG - chr8_1:146086-146105 None:intergenic 45.0%
GCAATTGTTATGCAGTGGGT+TGG + chr8_1:146133-146152 Msa1170810:intron 45.0%
!!! CGTTTTGAAGATTAACGGGG+AGG + chr8_1:146178-146197 Msa1170810:CDS 45.0%
! TGGGTTTTCGCGATTCTGAT+CGG - chr8_1:146672-146691 None:intergenic 45.0%
TTCACAATCCGGATCGTTAG+GGG - chr8_1:146715-146734 None:intergenic 45.0%
!!! GTCGGGGTTTTTGGCTTATT+TGG + chr8_1:146761-146780 Msa1170810:intron 45.0%
GACCAAAGGGGTTAAGGAAT+TGG + chr8_1:146840-146859 Msa1170810:intron 45.0%
CACCAATTCCTTAACCCCTT+TGG - chr8_1:146845-146864 None:intergenic 45.0%
CAAAGGGGTTAAGGAATTGG+TGG + chr8_1:146843-146862 Msa1170810:intron 45.0%
GGAATTGGTGGAGGACATTA+AGG + chr8_1:146855-146874 Msa1170810:intron 45.0%
AGGACATTAAGGTGATGTCG+TGG + chr8_1:146866-146885 Msa1170810:intron 45.0%
GGACATTAAGGTGATGTCGT+GGG + chr8_1:146867-146886 Msa1170810:intron 45.0%
TTAAGGTGATGTCGTGGGAA+TGG + chr8_1:146872-146891 Msa1170810:intron 45.0%
!! AGATACCTGGGGGTATGTTT+TGG + chr8_1:146971-146990 Msa1170810:intron 45.0%
!! GATACCTGGGGGTATGTTTT+GGG + chr8_1:146972-146991 Msa1170810:intron 45.0%
!! ATACCTGGGGGTATGTTTTG+GGG + chr8_1:146973-146992 Msa1170810:intron 45.0%
CAGCATGGCACCAAAACAAA+AGG - chr8_1:147016-147035 None:intergenic 45.0%
!!! GTTTTGGTGCCATGCTGTTT+TGG + chr8_1:147019-147038 Msa1170810:intron 45.0%
TAAATTGTCGGAAACGGTCC+TGG - chr8_1:147206-147225 None:intergenic 45.0%
GACCGTTTCCGACAATTTAG+AGG + chr8_1:147207-147226 Msa1170810:intron 45.0%
GGCCTCTAAATTGTCGGAAA+CGG - chr8_1:147212-147231 None:intergenic 45.0%
GGGTATAATTGTTGGGGTGT+AGG - chr8_1:147395-147414 None:intergenic 45.0%
ATTTGAGCCCCCCCATAAAT+TGG + chr8_1:147429-147448 Msa1170810:intron 45.0%
AGCTAGGCCTCCAATTTATG+GGG - chr8_1:147442-147461 None:intergenic 45.0%
GAGCTAGGCCTCCAATTTAT+GGG - chr8_1:147443-147462 None:intergenic 45.0%
AACAACACAGGAGAAAAGGC+CGG - chr8_1:147511-147530 None:intergenic 45.0%
GGGCACAAAAACAACAACAC+AGG - chr8_1:147523-147542 None:intergenic 45.0%
!!! GTTGTTGTTTTTGTGCCCAG+CGG + chr8_1:147525-147544 Msa1170810:intron 45.0%
CGGCTCTTTCACTTCTTGTT+AGG + chr8_1:147545-147564 Msa1170810:intron 45.0%
! GCAGGGATTTTACTCAACTC+GGG - chr8_1:147618-147637 None:intergenic 45.0%
! CGCAGGGATTTTACTCAACT+CGG - chr8_1:147619-147638 None:intergenic 45.0%
CCAGGATCGTTAGAATCGTA+TGG - chr8_1:147684-147703 None:intergenic 45.0%
CCATACGATTCTAACGATCC+TGG + chr8_1:147681-147700 Msa1170810:intron 45.0%
GGTTTGGGTAGTTGACAGTT+CGG + chr8_1:148068-148087 Msa1170810:intron 45.0%
CAGTTCGGATCTGAGAAGAT+TGG + chr8_1:148083-148102 Msa1170810:intron 45.0%
TAGCTGCTAACGGAGTAAAC+AGG - chr8_1:148385-148404 None:intergenic 45.0%
! CATGATCTTGGTAACTTCGC+AGG + chr8_1:148754-148773 Msa1170810:intron 45.0%
TAAGATAAGTGCAGCCTTGC+AGG - chr8_1:148899-148918 None:intergenic 45.0%
ATAACTACTCGTCGGCCTAT+AGG + chr8_1:148919-148938 Msa1170810:intron 45.0%
AGTTTGACCCATTGTGGTTC+AGG - chr8_1:149512-149531 None:intergenic 45.0%
CGATGGATAAATCTCGACAC+TGG + chr8_1:149618-149637 Msa1170810:CDS 45.0%
TCTCGACACTGGATGATAGT+TGG + chr8_1:149629-149648 Msa1170810:CDS 45.0%
TGTAGTGCATACACTGGTGA+GGG + chr8_1:149653-149672 Msa1170810:CDS 45.0%
GCTTGCTTGAGGGATTTGAT+TGG + chr8_1:149675-149694 Msa1170810:CDS 45.0%
GCTTGAGGGATTTGATTGGT+TGG + chr8_1:149679-149698 Msa1170810:CDS 45.0%
! AGATTCTAGAGGCTATGTCC+TGG - chr8_1:149706-149725 None:intergenic 45.0%
GTCGAGCAAGTAGATTCTAG+AGG - chr8_1:149717-149736 None:intergenic 45.0%
TCATGCCGACATCCATGAAA+GGG + chr8_1:149746-149765 Msa1170810:three_prime_UTR 45.0%
GGAACATCTCAAGAGATGCA+GGG - chr8_1:149834-149853 None:intergenic 45.0%
TGGAACATCTCAAGAGATGC+AGG - chr8_1:149835-149854 None:intergenic 45.0%
!! ATTGGTGTGCCGGCTCAAAA+TGG + chr8_1:144532-144551 Msa1170810:five_prime_UTR 50.0%
!! TTGGTGTGCCGGCTCAAAAT+GGG + chr8_1:144533-144552 Msa1170810:five_prime_UTR 50.0%
TCGCTAGTCAAACCTAGAGC+TGG - chr8_1:144577-144596 None:intergenic 50.0%
! TTCTGGTGGGTGTCTTACAG+AGG + chr8_1:144734-144753 Msa1170810:five_prime_UTR 50.0%
CTCGGGCATGGGTAATTTCT+AGG - chr8_1:145589-145608 None:intergenic 50.0%
CTAGAAATTACCCATGCCCG+AGG + chr8_1:145587-145606 Msa1170810:intron 50.0%
TATCTATGCTCCCATGCCCT+CGG - chr8_1:145607-145626 None:intergenic 50.0%
! AATTTTGGGCCATGACGCCA+GGG - chr8_1:145883-145902 None:intergenic 50.0%
! TAATTTTGGGCCATGACGCC+AGG - chr8_1:145884-145903 None:intergenic 50.0%
!! TGCAGTGGGTTGGACAATTC+AGG + chr8_1:146143-146162 Msa1170810:intron 50.0%
!! GCAGTGGGTTGGACAATTCA+GGG + chr8_1:146144-146163 Msa1170810:intron 50.0%
! GGGTTTTCGCGATTCTGATC+GGG - chr8_1:146671-146690 None:intergenic 50.0%
TTCACTCACCCCTAACGATC+CGG + chr8_1:146704-146723 Msa1170810:intron 50.0%
AGGGGTTAAGGAATTGGTGG+AGG + chr8_1:146846-146865 Msa1170810:intron 50.0%
GGGGGGCTCAAATATTCGTA+GGG - chr8_1:147422-147441 None:intergenic 50.0%
TAGGCCTCCAATTTATGGGG+GGG - chr8_1:147439-147458 None:intergenic 50.0%
CTAGGCCTCCAATTTATGGG+GGG - chr8_1:147440-147459 None:intergenic 50.0%
GCTAGGCCTCCAATTTATGG+GGG - chr8_1:147441-147460 None:intergenic 50.0%
GGAGCTAGGCCTCCAATTTA+TGG - chr8_1:147444-147463 None:intergenic 50.0%
CAAGAAGTGAAAGAGCCGCT+GGG - chr8_1:147543-147562 None:intergenic 50.0%
ACAAGAAGTGAAAGAGCCGC+TGG - chr8_1:147544-147563 None:intergenic 50.0%
!! GGATTTGCTGTATCCACCGA+AGG - chr8_1:148364-148383 None:intergenic 50.0%
CTGATATGCTCTAACTGCGC+AGG + chr8_1:149580-149599 Msa1170810:intron 50.0%
!! AACTGCGCAGGTGTTGAACT+TGG + chr8_1:149592-149611 Msa1170810:intron 50.0%
! GGTGTTGAACTTGGAAGCGA+TGG + chr8_1:149601-149620 Msa1170810:intron 50.0%
GTTGGCTGTAGTGCATACAC+TGG + chr8_1:149647-149666 Msa1170810:CDS 50.0%
CTGTAGTGCATACACTGGTG+AGG + chr8_1:149652-149671 Msa1170810:CDS 50.0%
! GGGATTTGATTGGTTGGTCC+AGG + chr8_1:149685-149704 Msa1170810:CDS 50.0%
CTCATGCCGACATCCATGAA+AGG + chr8_1:149745-149764 Msa1170810:three_prime_UTR 50.0%
ACATCTCAAGAGATGCAGGG+AGG - chr8_1:149831-149850 None:intergenic 50.0%
! TGGTGGGTGTCTTACAGAGG+CGG + chr8_1:144737-144756 Msa1170810:five_prime_UTR 55.0%
ACAGAGGCGGATCCACCATA+TGG + chr8_1:144750-144769 Msa1170810:five_prime_UTR 55.0%
ATCTATGCTCCCATGCCCTC+GGG - chr8_1:145606-145625 None:intergenic 55.0%
CGAATGTCTAGATCTGCCCC+TGG + chr8_1:145863-145882 Msa1170810:intron 55.0%
! ATTTTGGGCCATGACGCCAG+GGG - chr8_1:145882-145901 None:intergenic 55.0%
AGCGTCATCAGTCCTACCCT+TGG + chr8_1:146206-146225 Msa1170810:CDS 55.0%
ACTCCCCAAAACATACCCCC+AGG - chr8_1:146979-146998 None:intergenic 55.0%
!!! TGCCATGCTGTTTTGGCGCT+GGG + chr8_1:147026-147045 Msa1170810:intron 55.0%
AGTTCAGGGCTGTGGCTTCT+CGG + chr8_1:147064-147083 Msa1170810:intron 55.0%
! GGGTGGTTTGGCTTAGGTGT+TGG + chr8_1:147167-147186 Msa1170810:intron 55.0%
GGGGGGGCTCAAATATTCGT+AGG - chr8_1:147423-147442 None:intergenic 55.0%
TGAGCCCCCCCATAAATTGG+AGG + chr8_1:147432-147451 Msa1170810:intron 55.0%
GCAAGGAGCTCTATGGAGCT+AGG - chr8_1:147458-147477 None:intergenic 55.0%
GGCAAGAGCAAGGAGCTCTA+TGG - chr8_1:147465-147484 None:intergenic 55.0%
! GCTGTATCCACCGAAGGCAT+TGG - chr8_1:148358-148377 None:intergenic 55.0%
! ACTGGTGAGGGCTTGCTTGA+GGG + chr8_1:149665-149684 Msa1170810:CDS 55.0%
ATTACCCATGCCCGAGGGCA+TGG + chr8_1:145593-145612 Msa1170810:intron 60.0%
! TTACCCATGCCCGAGGGCAT+GGG + chr8_1:145594-145613 Msa1170810:intron 60.0%
TAGATCTGCCCCTGGCGTCA+TGG + chr8_1:145871-145890 Msa1170810:intron 60.0%
!!! GTGCCATGCTGTTTTGGCGC+TGG + chr8_1:147025-147044 Msa1170810:intron 60.0%
CACCCAGCGCCAAAACAGCA+TGG - chr8_1:147031-147050 None:intergenic 60.0%
!!! CATGCTGTTTTGGCGCTGGG+TGG + chr8_1:147029-147048 Msa1170810:intron 60.0%
TGGCTGCGGTCTTCCAGTTC+AGG + chr8_1:147049-147068 Msa1170810:intron 60.0%
GGCTGCGGTCTTCCAGTTCA+GGG + chr8_1:147050-147069 Msa1170810:intron 60.0%
GGTCTTCCAGTTCAGGGCTG+TGG + chr8_1:147056-147075 Msa1170810:intron 60.0%
GAGAAGCCACAGCCCTGAAC+TGG - chr8_1:147065-147084 None:intergenic 60.0%
CGGAAACGGTCCTGGCTACA+CGG - chr8_1:147198-147217 None:intergenic 60.0%
AGAGCTCCTTGCTCTTGCCC+AGG + chr8_1:147466-147485 Msa1170810:intron 60.0%
GAGCTCCTTGCTCTTGCCCA+GGG + chr8_1:147467-147486 Msa1170810:intron 60.0%
TCCTTGCTCTTGCCCAGGGA+CGG + chr8_1:147471-147490 Msa1170810:intron 60.0%
! CACTGGTGAGGGCTTGCTTG+AGG + chr8_1:149664-149683 Msa1170810:CDS 60.0%
!! GTTTTGGCGCTGGGTGGCTG+CGG + chr8_1:147035-147054 Msa1170810:intron 65.0%
GGCTGTGGCTTCTCGGCAGT+GGG + chr8_1:147071-147090 Msa1170810:intron 65.0%
GCTGTGGCTTCTCGGCAGTG+GGG + chr8_1:147072-147091 Msa1170810:intron 65.0%
TCGGCAGTGGGGTCTGTCTG+TGG + chr8_1:147083-147102 Msa1170810:intron 65.0%
!! GTTGGCCTTGCCGTGTAGCC+AGG + chr8_1:147185-147204 Msa1170810:intron 65.0%
ACGGTCCTGGCTACACGGCA+AGG - chr8_1:147193-147212 None:intergenic 65.0%
CCTTGCTCTTGCCCAGGGAC+GGG + chr8_1:147472-147491 Msa1170810:intron 65.0%
!! AAAAGGCCGGTGCTGCACGC+AGG - chr8_1:147498-147517 None:intergenic 65.0%
GCTCCCATGCCCTCGGGCAT+GGG - chr8_1:145600-145619 None:intergenic 70.0%
TGCTCCCATGCCCTCGGGCA+TGG - chr8_1:145601-145620 None:intergenic 70.0%
GGGCTGTGGCTTCTCGGCAG+TGG + chr8_1:147070-147089 Msa1170810:intron 70.0%
CCCGTCCCTGGGCAAGAGCA+AGG - chr8_1:147475-147494 None:intergenic 70.0%
CTGCACGCAGGCCCGTCCCT+GGG - chr8_1:147486-147505 None:intergenic 75.0%
GACGGGCCTGCGTGCAGCAC+CGG + chr8_1:147489-147508 Msa1170810:intron 75.0%
! GCTGCACGCAGGCCCGTCCC+TGG - chr8_1:147487-147506 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 144464 150089 144464 ID=Msa1170810;Name=Msa1170810
chr8_1 mRNA 144464 150089 144464 ID=Msa1170810-mRNA-1;Parent=Msa1170810;Name=Msa1170810-mRNA-1;_AED=0.15;_eAED=0.15;_QI=466|0.83|0.85|1|0.66|0.57|7|350|151
chr8_1 exon 144464 144662 144464 ID=Msa1170810-mRNA-1:exon:18;Parent=Msa1170810-mRNA-1
chr8_1 exon 144684 144929 144684 ID=Msa1170810-mRNA-1:exon:19;Parent=Msa1170810-mRNA-1
chr8_1 exon 145984 146069 145984 ID=Msa1170810-mRNA-1:exon:20;Parent=Msa1170810-mRNA-1
chr8_1 exon 146148 146258 146148 ID=Msa1170810-mRNA-1:exon:21;Parent=Msa1170810-mRNA-1
chr8_1 exon 148086 148146 148086 ID=Msa1170810-mRNA-1:exon:22;Parent=Msa1170810-mRNA-1
chr8_1 exon 148652 148732 148652 ID=Msa1170810-mRNA-1:exon:23;Parent=Msa1170810-mRNA-1
chr8_1 exon 149602 150089 149602 ID=Msa1170810-mRNA-1:exon:24;Parent=Msa1170810-mRNA-1
chr8_1 five_prime_UTR 144464 144662 144464 ID=Msa1170810-mRNA-1:five_prime_utr;Parent=Msa1170810-mRNA-1
chr8_1 five_prime_UTR 144684 144929 144684 ID=Msa1170810-mRNA-1:five_prime_utr;Parent=Msa1170810-mRNA-1
chr8_1 five_prime_UTR 145984 146004 145984 ID=Msa1170810-mRNA-1:five_prime_utr;Parent=Msa1170810-mRNA-1
chr8_1 CDS 146005 146069 146005 ID=Msa1170810-mRNA-1:cds;Parent=Msa1170810-mRNA-1
chr8_1 CDS 146148 146258 146148 ID=Msa1170810-mRNA-1:cds;Parent=Msa1170810-mRNA-1
chr8_1 CDS 148086 148146 148086 ID=Msa1170810-mRNA-1:cds;Parent=Msa1170810-mRNA-1
chr8_1 CDS 148652 148732 148652 ID=Msa1170810-mRNA-1:cds;Parent=Msa1170810-mRNA-1
chr8_1 CDS 149602 149739 149602 ID=Msa1170810-mRNA-1:cds;Parent=Msa1170810-mRNA-1
chr8_1 three_prime_UTR 149740 150089 149740 ID=Msa1170810-mRNA-1:three_prime_utr;Parent=Msa1170810-mRNA-1
Gene Sequence

>Msa1170810

ATGGGTCTTCTCAGCATCATTCGGAAAATTAAGAAGAAGGAGAAGGAAATGCGAATTCTTATGGTTGGGTTGGACAATTCAGGGAAAACTACAATCGTTTTGAAGATTAACGGGGAGGACACTAGCGTCATCAGTCCTACCCTTGGATTCAACATCAAAACCATCACCTACCAGAATTCGGATCTGAGAAGATTGGATGATTGCAAAATGGAGCTAGATAACCTTCTAAAGGAAGAGAGACTATCTGGAGCATCCTTACTAATTCTAGCAAATAAACAAGATATTAAAGGCGCCCTTGCACCAGAAGAAATAGCTAAGGTGTTGAACTTGGAAGCGATGGATAAATCTCGACACTGGATGATAGTTGGCTGTAGTGCATACACTGGTGAGGGCTTGCTTGAGGGATTTGATTGGTTGGTCCAGGACATAGCCTCTAGAATCTACTTGCTCGACTAA
Protein sequence

>Msa1170810

MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQNSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIKGALAPEEIAKVLNLEAMDKSRHWMIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD*