Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227310 | XP_013465303.1 | 99.115 | 113 | 1 | 0 | 1 | 113 | 1 | 113 | 1.52e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227310 | sp|Q9LZD7|MED7B_ARATH | 77.876 | 113 | 25 | 0 | 1 | 113 | 1 | 113 | 1.45e-54 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227310 | I3T127 | 99.115 | 113 | 1 | 0 | 1 | 113 | 1 | 113 | 7.28e-76 | 231 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0227310 | TR | MED7 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0227310 | 0.856008 | 4.300879e-62 | -8.615850e-47 |
| Msa0006880 | Msa0227310 | -0.800591 | 1.341159e-48 | -8.615850e-47 |
| Msa0021090 | Msa0227310 | 0.824901 | 6.278291e-54 | -8.615850e-47 |
| Msa0027580 | Msa0227310 | -0.822613 | 2.157380e-53 | -8.615850e-47 |
| Msa0036370 | Msa0227310 | -0.812010 | 5.256843e-51 | -8.615850e-47 |
| Msa0072170 | Msa0227310 | -0.820383 | 7.061934e-53 | -8.615850e-47 |
| Msa0075340 | Msa0227310 | -0.823612 | 1.261151e-53 | -8.615850e-47 |
| Msa0094010 | Msa0227310 | -0.816338 | 5.822218e-52 | -8.615850e-47 |
| Msa0100800 | Msa0227310 | -0.815841 | 7.519484e-52 | -8.615850e-47 |
| Msa0120540 | Msa0227310 | -0.824815 | 6.579500e-54 | -8.615850e-47 |
| Msa0140400 | Msa0227310 | -0.806078 | 9.795589e-50 | -8.615850e-47 |
| Msa0140520 | Msa0227310 | 0.810621 | 1.052497e-50 | -8.615850e-47 |
| Msa0173330 | Msa0227310 | -0.814781 | 1.293825e-51 | -8.615850e-47 |
| Msa0182280 | Msa0227310 | -0.808898 | 2.469772e-50 | -8.615850e-47 |
| Msa0186310 | Msa0227310 | -0.816881 | 4.400009e-52 | -8.615850e-47 |
| Msa0212750 | Msa0227310 | 0.841663 | 4.144732e-58 | -8.615850e-47 |
| Msa0219250 | Msa0227310 | 0.820275 | 7.475025e-53 | -8.615850e-47 |
| Msa0227310 | Msa0229940 | -0.806127 | 9.565350e-50 | -8.615850e-47 |
| Msa0227310 | Msa0239940 | -0.812283 | 4.582631e-51 | -8.615850e-47 |
| Msa0227310 | Msa0252240 | -0.803414 | 3.526123e-49 | -8.615850e-47 |
| Msa0227310 | Msa0258880 | 0.816472 | 5.435143e-52 | -8.615850e-47 |
| Msa0227310 | Msa0265160 | -0.831476 | 1.633585e-55 | -8.615850e-47 |
| Msa0227310 | Msa0275400 | 0.838643 | 2.545730e-57 | -8.615850e-47 |
| Msa0227310 | Msa0287670 | -0.804742 | 1.866817e-49 | -8.615850e-47 |
| Msa0227310 | Msa0295000 | 0.824506 | 7.781074e-54 | -8.615850e-47 |
| Msa0227310 | Msa0308220 | -0.823138 | 1.627720e-53 | -8.615850e-47 |
| Msa0227310 | Msa0335320 | 0.809083 | 2.254658e-50 | -8.615850e-47 |
| Msa0227310 | Msa0370160 | 0.833387 | 5.492407e-56 | -8.615850e-47 |
| Msa0227310 | Msa0387910 | -0.826438 | 2.712361e-54 | -8.615850e-47 |
| Msa0227310 | Msa0403190 | -0.805912 | 1.061386e-49 | -8.615850e-47 |
| Msa0227310 | Msa0419640 | 0.832236 | 1.060560e-55 | -8.615850e-47 |
| Msa0227310 | Msa0421260 | -0.815046 | 1.129504e-51 | -8.615850e-47 |
| Msa0227310 | Msa0426810 | -0.816024 | 6.844114e-52 | -8.615850e-47 |
| Msa0227310 | Msa0436200 | -0.832882 | 7.333649e-56 | -8.615850e-47 |
| Msa0227310 | Msa0437690 | 0.818215 | 2.201514e-52 | -8.615850e-47 |
| Msa0227310 | Msa0462540 | -0.812061 | 5.122964e-51 | -8.615850e-47 |
| Msa0227310 | Msa0469910 | 0.837658 | 4.564329e-57 | -8.615850e-47 |
| Msa0227310 | Msa0505060 | -0.802087 | 6.625222e-49 | -8.615850e-47 |
| Msa0227310 | Msa0509950 | 0.812050 | 5.153212e-51 | -8.615850e-47 |
| Msa0227310 | Msa0524590 | -0.814023 | 1.902453e-51 | -8.615850e-47 |
| Msa0227310 | Msa0533960 | 0.820348 | 7.192276e-53 | -8.615850e-47 |
| Msa0227310 | Msa0554180 | 0.825436 | 4.693239e-54 | -8.615850e-47 |
| Msa0227310 | Msa0578090 | -0.803912 | 2.779539e-49 | -8.615850e-47 |
| Msa0227310 | Msa0585620 | 0.800618 | 1.324765e-48 | -8.615850e-47 |
| Msa0227310 | Msa0586850 | -0.817385 | 3.389229e-52 | -8.615850e-47 |
| Msa0227310 | Msa0590650 | -0.808488 | 3.022004e-50 | -8.615850e-47 |
| Msa0227310 | Msa0607290 | 0.801966 | 7.016881e-49 | -8.615850e-47 |
| Msa0227310 | Msa0609970 | -0.832248 | 1.053732e-55 | -8.615850e-47 |
| Msa0227310 | Msa0618200 | 0.830950 | 2.199783e-55 | -8.615850e-47 |
| Msa0227310 | Msa0624550 | 0.803048 | 4.198878e-49 | -8.615850e-47 |
| Msa0227310 | Msa0650620 | -0.810758 | 9.829636e-51 | -8.615850e-47 |
| Msa0227310 | Msa0704800 | -0.801313 | 9.549031e-49 | -8.615850e-47 |
| Msa0227310 | Msa0712310 | -0.806746 | 7.080746e-50 | -8.615850e-47 |
| Msa0227310 | Msa0720370 | -0.822371 | 2.455082e-53 | -8.615850e-47 |
| Msa0227310 | Msa0752620 | -0.807672 | 4.508629e-50 | -8.615850e-47 |
| Msa0227310 | Msa0756930 | -0.808597 | 2.864525e-50 | -8.615850e-47 |
| Msa0227310 | Msa0784620 | -0.812602 | 3.904577e-51 | -8.615850e-47 |
| Msa0227310 | Msa0798810 | 0.808487 | 3.023987e-50 | -8.615850e-47 |
| Msa0227310 | Msa0799010 | 0.819332 | 1.227570e-52 | -8.615850e-47 |
| Msa0227310 | Msa0820530 | 0.812477 | 4.156729e-51 | -8.615850e-47 |
| Msa0227310 | Msa0824730 | -0.820613 | 6.252086e-53 | -8.615850e-47 |
| Msa0227310 | Msa0830990 | -0.805380 | 1.372696e-49 | -8.615850e-47 |
| Msa0227310 | Msa0836210 | 0.804877 | 1.749306e-49 | -8.615850e-47 |
| Msa0227310 | Msa0876860 | 0.812454 | 4.205750e-51 | -8.615850e-47 |
| Msa0227310 | Msa0879860 | -0.802949 | 4.399878e-49 | -8.615850e-47 |
| Msa0227310 | Msa0924150 | 0.816097 | 6.591793e-52 | -8.615850e-47 |
| Msa0227310 | Msa0940830 | -0.803839 | 2.878750e-49 | -8.615850e-47 |
| Msa0227310 | Msa0947530 | 0.817559 | 3.096790e-52 | -8.615850e-47 |
| Msa0227310 | Msa0957450 | 0.824413 | 8.181280e-54 | -8.615850e-47 |
| Msa0227310 | Msa1002600 | 0.821752 | 3.415442e-53 | -8.615850e-47 |
| Msa0227310 | Msa1003440 | -0.816274 | 6.018657e-52 | -8.615850e-47 |
| Msa0227310 | Msa1028470 | 0.804471 | 2.125754e-49 | -8.615850e-47 |
| Msa0227310 | Msa1030930 | -0.810256 | 1.261440e-50 | -8.615850e-47 |
| Msa0227310 | Msa1038210 | 0.816558 | 5.198648e-52 | -8.615850e-47 |
| Msa0227310 | Msa1069660 | 0.824609 | 7.357390e-54 | -8.615850e-47 |
| Msa0227310 | Msa1070050 | -0.815850 | 7.484894e-52 | -8.615850e-47 |
| Msa0227310 | Msa1073400 | -0.801373 | 9.283449e-49 | -8.615850e-47 |
| Msa0227310 | Msa1079620 | -0.815084 | 1.107900e-51 | -8.615850e-47 |
| Msa0227310 | Msa1087510 | 0.851461 | 8.741926e-61 | -8.615850e-47 |
| Msa0227310 | Msa1088290 | -0.800574 | 1.352067e-48 | -8.615850e-47 |
| Msa0227310 | Msa1089740 | 0.831343 | 1.761334e-55 | -8.615850e-47 |
| Msa0227310 | Msa1098720 | 0.816963 | 4.217689e-52 | -8.615850e-47 |
| Msa0227310 | Msa1103660 | 0.804046 | 2.606286e-49 | -8.615850e-47 |
| Msa0227310 | Msa1125790 | 0.803645 | 3.158494e-49 | -8.615850e-47 |
| Msa0227310 | Msa1126120 | 0.850560 | 1.569179e-60 | -8.615850e-47 |
| Msa0227310 | Msa1135810 | 0.804499 | 2.098299e-49 | -8.615850e-47 |
| Msa0227310 | Msa1170810 | 0.809592 | 1.753093e-50 | -8.615850e-47 |
| Msa0227310 | Msa1171770 | 0.814172 | 1.763509e-51 | -8.615850e-47 |
| Msa0227310 | Msa1172130 | 0.844137 | 9.108224e-59 | -8.615850e-47 |
| Msa0227310 | Msa1173900 | -0.812818 | 3.500806e-51 | -8.615850e-47 |
| Msa0227310 | Msa1182640 | -0.807092 | 5.984886e-50 | -8.615850e-47 |
| Msa0227310 | Msa1211050 | 0.868087 | 8.470098e-66 | -8.615850e-47 |
| Msa0227310 | Msa1233950 | -0.801300 | 9.607111e-49 | -8.615850e-47 |
| Msa0227310 | Msa1236070 | 0.831060 | 2.067691e-55 | -8.615850e-47 |
| Msa0227310 | Msa1246530 | 0.826825 | 2.193303e-54 | -8.615850e-47 |
| Msa0227310 | Msa1253810 | -0.809634 | 1.717630e-50 | -8.615850e-47 |
| Msa0227310 | Msa1294960 | -0.803527 | 3.340818e-49 | -8.615850e-47 |
| Msa0227310 | Msa1298550 | 0.814701 | 1.347108e-51 | -8.615850e-47 |
| Msa0227310 | Msa1310660 | -0.828710 | 7.726252e-55 | -8.615850e-47 |
| Msa0227310 | Msa1330890 | 0.828588 | 8.269847e-55 | -8.615850e-47 |
| Msa0227310 | Msa1350690 | -0.803472 | 3.429764e-49 | -8.615850e-47 |
| Msa0227310 | Msa1360890 | 0.809773 | 1.603595e-50 | -8.615850e-47 |
| Msa0227310 | Msa1363700 | -0.806740 | 7.103876e-50 | -8.615850e-47 |
| Msa0227310 | Msa1364060 | -0.804084 | 2.559549e-49 | -8.615850e-47 |
| Msa0227310 | Msa1398860 | -0.803485 | 3.409200e-49 | -8.615850e-47 |
| Msa0227310 | Msa1425340 | -0.806262 | 8.957578e-50 | -8.615850e-47 |
| Msa0227310 | Msa1438450 | -0.804698 | 1.906986e-49 | -8.615850e-47 |
| Msa0227310 | Msa1442220 | 0.851743 | 7.273129e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227310 | MtrunA17_Chr2g0326811 | 99.115 | 113 | 1 | 0 | 1 | 113 | 1 | 113 | 1.40e-79 | 231 |
| Msa0227310 | MtrunA17_Chr6g0478701 | 99.115 | 113 | 1 | 0 | 1 | 113 | 1 | 113 | 1.43e-79 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227310 | AT5G03500.3 | 77.876 | 113 | 25 | 0 | 1 | 113 | 1 | 113 | 1.47e-55 | 171 |
| Msa0227310 | AT5G03500.4 | 77.876 | 113 | 25 | 0 | 1 | 113 | 1 | 113 | 1.47e-55 | 171 |
| Msa0227310 | AT5G03500.2 | 77.876 | 113 | 25 | 0 | 1 | 113 | 1 | 113 | 1.47e-55 | 171 |
| Msa0227310 | AT5G03500.5 | 77.876 | 113 | 25 | 0 | 1 | 113 | 1 | 113 | 1.47e-55 | 171 |
| Msa0227310 | AT5G03500.7 | 77.876 | 113 | 25 | 0 | 1 | 113 | 1 | 113 | 1.47e-55 | 171 |
| Msa0227310 | AT5G03500.1 | 77.876 | 113 | 25 | 0 | 1 | 113 | 1 | 113 | 1.47e-55 | 171 |
| Msa0227310 | AT5G03500.6 | 78.571 | 112 | 24 | 0 | 1 | 112 | 11 | 122 | 1.58e-55 | 171 |
| Msa0227310 | AT5G03220.1 | 78.761 | 113 | 24 | 0 | 1 | 113 | 1 | 113 | 1.54e-50 | 158 |
Find 68 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGCACTAACTCCTTTA+AGG | 0.149872 | 2_1:-78113901 | Msa0227310:three_prime_UTR |
| AGCAACTTTGATTCACATTT+TGG | 0.169360 | 2_1:-78115224 | Msa0227310:three_prime_UTR |
| GTTATTTAGTGAAACCTTAA+AGG | 0.179125 | 2_1:+78113887 | None:intergenic |
| AGAATTGCAACTACACATTT+TGG | 0.197843 | 2_1:-78115474 | Msa0227310:CDS |
| CACCACCACCACCTTATTAC+AGG | 0.297273 | 2_1:-78117461 | Msa0227310:CDS |
| AAGGAGCTGAGGTCACTTAA+TGG | 0.305351 | 2_1:-78115497 | Msa0227310:CDS |
| TGTCCTCCACAGCTTGTTTA+CGG | 0.307186 | 2_1:+78115185 | None:intergenic |
| TAAGATAGCCTACCAATATT+AGG | 0.320366 | 2_1:+78115821 | None:intergenic |
| GGTGCTTAATTTAAAATTAG+AGG | 0.323185 | 2_1:+78113854 | None:intergenic |
| AACGTGTTTAAGCCGATTAA+CGG | 0.328027 | 2_1:+78118358 | None:intergenic |
| GAAGGAACTTATATCTGTTT+CGG | 0.341977 | 2_1:-78117381 | Msa0227310:CDS |
| GACCGCTCTCTGTTTCGGTT+TGG | 0.345257 | 2_1:-78118322 | Msa0227310:five_prime_UTR |
| TCAATTGGTGGTGGAGGCTC+TGG | 0.354209 | 2_1:+78117402 | None:intergenic |
| CGGGAGGAGCTTACTAGGTT+TGG | 0.354843 | 2_1:+78118163 | None:intergenic |
| GATACATCTATGATCTTTGA+AGG | 0.365413 | 2_1:-78117526 | Msa0227310:five_prime_UTR |
| CAGATATAAGTTCCTTCAAT+TGG | 0.376411 | 2_1:+78117387 | None:intergenic |
| GAATTCACTGCGTCCTCATC+AGG | 0.378652 | 2_1:-78115361 | Msa0227310:intron |
| GGAGGCTCTGGAGCAGACTC+AGG | 0.379890 | 2_1:+78117414 | None:intergenic |
| AATCTTCTTCTGCCTATTGA+AGG | 0.388386 | 2_1:-78118230 | Msa0227310:five_prime_UTR |
| CATTAAAACATAGTTAGTTA+TGG | 0.391947 | 2_1:-78113960 | Msa0227310:three_prime_UTR |
| TTCAATAGGCAGAAGAAGAT+TGG | 0.392359 | 2_1:+78118232 | None:intergenic |
| TCTTTGTAAAGCCTGTAATA+AGG | 0.393712 | 2_1:+78117450 | None:intergenic |
| AAGCTGTGGAGGACATAAAT+AGG | 0.396665 | 2_1:-78115177 | Msa0227310:intron |
| AGACAATCATGACAACCTTA+AGG | 0.402119 | 2_1:-78113926 | Msa0227310:three_prime_UTR |
| GAGTCATTGGCAACACTTGA+TGG | 0.406036 | 2_1:-78113984 | Msa0227310:three_prime_UTR |
| TCAATAGGCAGAAGAAGATT+GGG | 0.410011 | 2_1:+78118233 | None:intergenic |
| TATTCTAAAGGACCTAATAT+TGG | 0.416061 | 2_1:-78115833 | Msa0227310:intron |
| ACTTATACAAATTTGAATCA+TGG | 0.424889 | 2_1:-78113772 | Msa0227310:three_prime_UTR |
| GACAATCATGACAACCTTAA+GGG | 0.429800 | 2_1:-78113925 | Msa0227310:three_prime_UTR |
| TGCTGCACTAATCCGTTAAT+CGG | 0.435653 | 2_1:-78118370 | Msa0227310:five_prime_UTR |
| CTGTAATAAGGTGGTGGTGG+TGG | 0.437759 | 2_1:+78117462 | None:intergenic |
| ACCCCTTGTTCTTCCAAGCT+TGG | 0.438251 | 2_1:+78115866 | None:intergenic |
| ATTAACAACAACTAACCATA+AGG | 0.461646 | 2_1:+78113833 | None:intergenic |
| GTGCTTAATTTAAAATTAGA+GGG | 0.462554 | 2_1:+78113855 | None:intergenic |
| GTGTTGCCAATGACTCGTTA+AGG | 0.463201 | 2_1:+78113991 | None:intergenic |
| AAGAATCCTTAACGAGTCAT+TGG | 0.477983 | 2_1:-78113997 | Msa0227310:three_prime_UTR |
| TGTTGATTTGATGAAAAGGA+AGG | 0.504287 | 2_1:+78113742 | None:intergenic |
| GAGCCTCCACCACCAATTGA+AGG | 0.507691 | 2_1:-78117399 | Msa0227310:CDS |
| GTTCCTTCAATTGGTGGTGG+AGG | 0.512465 | 2_1:+78117396 | None:intergenic |
| TCTTTGTTGATTTGATGAAA+AGG | 0.512609 | 2_1:+78113738 | None:intergenic |
| TAGGTCCTTTAGAATAGAGT+TGG | 0.518443 | 2_1:+78115840 | None:intergenic |
| ACTCTCCTTGCATATTGTGA+TGG | 0.520397 | 2_1:+78115425 | None:intergenic |
| TAAGTTCCTTCAATTGGTGG+TGG | 0.528553 | 2_1:+78117393 | None:intergenic |
| TAGTGATGTTCTACCAAGCT+TGG | 0.528638 | 2_1:-78115879 | Msa0227310:CDS |
| CTACCAAGCTTGGAAGAACA+AGG | 0.531498 | 2_1:-78115869 | Msa0227310:CDS |
| GAGGACGCAGTGAATTCAAA+AGG | 0.536683 | 2_1:+78115367 | None:intergenic |
| GTACGCCAACTCTATTCTAA+AGG | 0.542516 | 2_1:-78115845 | Msa0227310:CDS |
| TGTAATAAGGTGGTGGTGGT+GGG | 0.546044 | 2_1:+78117463 | None:intergenic |
| ATATAAGTTCCTTCAATTGG+TGG | 0.550214 | 2_1:+78117390 | None:intergenic |
| CAAGAATCACTGTGCATGGT+TGG | 0.552618 | 2_1:+78118196 | None:intergenic |
| AGCTGTACTCCATTTAAAGC+GGG | 0.560286 | 2_1:-78118299 | Msa0227310:five_prime_UTR |
| GAGGCTCTGGAGCAGACTCA+GGG | 0.562875 | 2_1:+78117415 | None:intergenic |
| AGCCTGTAATAAGGTGGTGG+TGG | 0.598331 | 2_1:+78117459 | None:intergenic |
| TAGATTTCAAGAAGGAGCTG+AGG | 0.608725 | 2_1:-78115508 | Msa0227310:CDS |
| AGAGCGCCGTAAACAAGCTG+TGG | 0.612592 | 2_1:-78115191 | Msa0227310:three_prime_UTR |
| ACCAAGCTTGGAAGAACAAG+GGG | 0.614422 | 2_1:-78115867 | Msa0227310:CDS |
| AGAGACCATCACAATATGCA+AGG | 0.622612 | 2_1:-78115430 | Msa0227310:CDS |
| GAGCTGTACTCCATTTAAAG+CGG | 0.626400 | 2_1:-78118300 | Msa0227310:five_prime_UTR |
| GGAACTTATATCTGTTTCGG+AGG | 0.626605 | 2_1:-78117378 | Msa0227310:CDS |
| CAATAGGCAGAAGAAGATTG+GGG | 0.630245 | 2_1:+78118234 | None:intergenic |
| TGTTCAAGAATCACTGTGCA+TGG | 0.632262 | 2_1:+78118192 | None:intergenic |
| GCGCCGTAAACAAGCTGTGG+AGG | 0.632418 | 2_1:-78115188 | Msa0227310:three_prime_UTR |
| GGAACATTGTATACCTGATG+AGG | 0.634197 | 2_1:+78115348 | None:intergenic |
| TTGTAAAGCCTGTAATAAGG+TGG | 0.646875 | 2_1:+78117453 | None:intergenic |
| TACCAAGCTTGGAAGAACAA+GGG | 0.654458 | 2_1:-78115868 | Msa0227310:CDS |
| TAAAGCCTGTAATAAGGTGG+TGG | 0.655388 | 2_1:+78117456 | None:intergenic |
| CTCCAAACCGAAACAGAGAG+CGG | 0.703885 | 2_1:+78118320 | None:intergenic |
| AATAGGCAGAAGAAGATTGG+GGG | 0.709557 | 2_1:+78118235 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATTAAAATTGCAA+GGG | + | chr2_1:78114810-78114829 | None:intergenic | 10.0% |
| !! | ATAATAATATTAAAATTGCA+AGG | + | chr2_1:78114811-78114830 | None:intergenic | 10.0% |
| !!! | TTGCAATTTTAATATTATTA+TGG | - | chr2_1:78114810-78114829 | Msa0227310:intron | 10.0% |
| !! | AAAAAATACAATCTATATAA+AGG | + | chr2_1:78117474-78117493 | None:intergenic | 10.0% |
| !!! | TGATTAGAAGATTTTATTTA+TGG | - | chr2_1:78114639-78114658 | Msa0227310:intron | 15.0% |
| !! | AATAATATTAAAATTGCAAG+GGG | + | chr2_1:78114809-78114828 | None:intergenic | 15.0% |
| !! | TTGAAAAATAAGTTCAAAAT+AGG | + | chr2_1:78115157-78115176 | None:intergenic | 15.0% |
| !! | AAAGGAAAAAATAATGATAT+GGG | + | chr2_1:78115765-78115784 | None:intergenic | 15.0% |
| !! | AAAAGGAAAAAATAATGATA+TGG | + | chr2_1:78115766-78115785 | None:intergenic | 15.0% |
| !! | ATGAAACAAATTTCAATAAA+GGG | + | chr2_1:78115878-78115897 | None:intergenic | 15.0% |
| !!! | AAAAAATAGTTCTTTTTATG+AGG | - | chr2_1:78116520-78116539 | Msa0227310:intron | 15.0% |
| !!! | ATTTTGTTTTTTAGTTTCAT+TGG | - | chr2_1:78117002-78117021 | Msa0227310:intron | 15.0% |
| !!! | TGCTATTCATATTTTAATTA+TGG | - | chr2_1:78117441-78117460 | Msa0227310:CDS | 15.0% |
| !!! | ATTCATATTTTAATTATGGA+AGG | - | chr2_1:78117445-78117464 | Msa0227310:CDS | 15.0% |
| !!! | TTATGGTTCTAATTACTATA+TGG | - | chr2_1:78114827-78114846 | Msa0227310:intron | 20.0% |
| !!! | GCTTTAATAATGTCATTTAA+TGG | - | chr2_1:78114966-78114985 | Msa0227310:intron | 20.0% |
| !!! | TTTTTACCTAATTTTAGCTT+TGG | - | chr2_1:78115003-78115022 | Msa0227310:intron | 20.0% |
| !!! | AAGCAAATAAAAGAACTTTT+GGG | + | chr2_1:78115076-78115095 | None:intergenic | 20.0% |
| !!! | AACTTATTTTTCAAAGTGTT+TGG | - | chr2_1:78115163-78115182 | Msa0227310:intron | 20.0% |
| !!! | ACTTATTTTTCAAAGTGTTT+GGG | - | chr2_1:78115164-78115183 | Msa0227310:intron | 20.0% |
| !!! | AATTAGCTTAAAATAGCTTA+TGG | + | chr2_1:78115250-78115269 | None:intergenic | 20.0% |
| !!! | ATTTTTAACAGCTTTTGAAA+GGG | + | chr2_1:78115555-78115574 | None:intergenic | 20.0% |
| !!! | TATTTTTAACAGCTTTTGAA+AGG | + | chr2_1:78115556-78115575 | None:intergenic | 20.0% |
| !! | AAAATATTGTCATCTAAACA+TGG | - | chr2_1:78115570-78115589 | Msa0227310:intron | 20.0% |
| !! | AAATATTGTCATCTAAACAT+GGG | - | chr2_1:78115571-78115590 | Msa0227310:intron | 20.0% |
| !! | TCAAAGGAAATATCTTTAAA+AGG | + | chr2_1:78115783-78115802 | None:intergenic | 20.0% |
| !! | CATGAAACAAATTTCAATAA+AGG | + | chr2_1:78115879-78115898 | None:intergenic | 20.0% |
| !! | ATTTGTTTCATGAGAATTAA+AGG | - | chr2_1:78115887-78115906 | Msa0227310:intron | 20.0% |
| !! | TTAAACTCTAAATTGATTGA+AGG | - | chr2_1:78115921-78115940 | Msa0227310:intron | 20.0% |
| !! | TAAACTCTAAATTGATTGAA+GGG | - | chr2_1:78115922-78115941 | Msa0227310:intron | 20.0% |
| !! | AGGAATGATATCATTAAATT+TGG | - | chr2_1:78115951-78115970 | Msa0227310:intron | 20.0% |
| !!! | AACACATAAACAGATATTTT+TGG | + | chr2_1:78116165-78116184 | None:intergenic | 20.0% |
| !! | GTATCATGTATTTACTTTAT+AGG | - | chr2_1:78116887-78116906 | Msa0227310:intron | 20.0% |
| !! | TGAAACTAAAAAACAAAATC+AGG | + | chr2_1:78117001-78117020 | None:intergenic | 20.0% |
| !!! | TTAGTTCATTCTTTTGAAAA+TGG | - | chr2_1:78117102-78117121 | Msa0227310:intron | 20.0% |
| !!! | TTCTCTTGTATTTCTATTTT+GGG | + | chr2_1:78117220-78117239 | None:intergenic | 20.0% |
| !! | AATGTAGTTAAAATTGATAG+TGG | - | chr2_1:78117708-78117727 | Msa0227310:intron | 20.0% |
| !! | GTATTTCATTAGAAAAAGTT+TGG | + | chr2_1:78117758-78117777 | None:intergenic | 20.0% |
| !!! | TAATTGTTTTATGATACGTA+TGG | - | chr2_1:78118042-78118061 | Msa0227310:intron | 20.0% |
| !!! | CATAACTAACTATGTTTTAA+TGG | + | chr2_1:78118180-78118199 | None:intergenic | 20.0% |
| !! | CATTAAAACATAGTTAGTTA+TGG | - | chr2_1:78118178-78118197 | Msa0227310:five_prime_UTR | 20.0% |
| !!! | GTGCTTAATTTAAAATTAGA+GGG | + | chr2_1:78118286-78118305 | None:intergenic | 20.0% |
| !!! | ATTTTAAATTAAGCACCTTA+TGG | - | chr2_1:78118290-78118309 | Msa0227310:five_prime_UTR | 20.0% |
| !!! | AAAACGATGTTTTTATGTTT+TGG | - | chr2_1:78118337-78118356 | Msa0227310:five_prime_UTR | 20.0% |
| !!! | AAACGATGTTTTTATGTTTT+GGG | - | chr2_1:78118338-78118357 | Msa0227310:five_prime_UTR | 20.0% |
| !! | ACTTATACAAATTTGAATCA+TGG | - | chr2_1:78118366-78118385 | Msa0227310:five_prime_UTR | 20.0% |
| !! | TAATAAAAACCCGCTTTAAA+TGG | + | chr2_1:78113851-78113870 | None:intergenic | 25.0% |
| !! | TCTCTGATCTTAATAGTTTT+AGG | - | chr2_1:78114130-78114149 | Msa0227310:intron | 25.0% |
| ! | AACAGATATGATATAACCAA+AGG | - | chr2_1:78114183-78114202 | Msa0227310:intron | 25.0% |
| !! | TTTTTCCTTACTAAACTCAT+TGG | + | chr2_1:78114292-78114311 | None:intergenic | 25.0% |
| !! | TATATTGCTTCCTAACTTTT+TGG | + | chr2_1:78114325-78114344 | None:intergenic | 25.0% |
| ! | CAGACATACTATCATATTTA+AGG | + | chr2_1:78114355-78114374 | None:intergenic | 25.0% |
| !! | GGGTTTACAAATCTAAAATT+AGG | - | chr2_1:78114390-78114409 | Msa0227310:intron | 25.0% |
| ! | ATCAATGCAAACAATGAAAT+TGG | - | chr2_1:78114427-78114446 | Msa0227310:intron | 25.0% |
| !!! | GAAGATTTTATTTATGGCAA+CGG | - | chr2_1:78114645-78114664 | Msa0227310:intron | 25.0% |
| !! | GAAGCAAATAAAAGAACTTT+TGG | + | chr2_1:78115077-78115096 | None:intergenic | 25.0% |
| !!! | CTTATTTTTCAAAGTGTTTG+GGG | - | chr2_1:78115165-78115184 | Msa0227310:intron | 25.0% |
| !!! | CTATTTACTATCTTGTTGTT+TGG | - | chr2_1:78115596-78115615 | Msa0227310:intron | 25.0% |
| ! | CAATCACACAACAAAAAAAA+TGG | + | chr2_1:78115626-78115645 | None:intergenic | 25.0% |
| !!! | CATTTTTTTTGTTGTGTGAT+TGG | - | chr2_1:78115624-78115643 | Msa0227310:intron | 25.0% |
| !!! | TTTCCATTTTTGAAGTCTTT+GGG | + | chr2_1:78115665-78115684 | None:intergenic | 25.0% |
| !!! | TTTTCCATTTTTGAAGTCTT+TGG | + | chr2_1:78115666-78115685 | None:intergenic | 25.0% |
| ! | ATGTATTTGAGAAGTTTCAA+AGG | + | chr2_1:78115799-78115818 | None:intergenic | 25.0% |
| !! | AAATACATCTTCGATAGTTT+TGG | - | chr2_1:78115811-78115830 | Msa0227310:intron | 25.0% |
| ! | AATTTCAATAAAGGGTAGTT+TGG | + | chr2_1:78115870-78115889 | None:intergenic | 25.0% |
| ! | TCATGAGAATTAAAGGTTAT+TGG | - | chr2_1:78115894-78115913 | Msa0227310:intron | 25.0% |
| !! | GTTAAGATTTGCGTATATTT+TGG | - | chr2_1:78115981-78116000 | Msa0227310:intron | 25.0% |
| ! | TATAAACAGCAAAAAAATCC+AGG | + | chr2_1:78116016-78116035 | None:intergenic | 25.0% |
| !! | TATTCTAAAGGACCTAATAT+TGG | - | chr2_1:78116305-78116324 | Msa0227310:intron | 25.0% |
| ! | ACATATTAGGTTACAATGTT+AGG | + | chr2_1:78116423-78116442 | None:intergenic | 25.0% |
| ! | TTAATAATGCCTAAAAGATC+AGG | + | chr2_1:78116473-78116492 | None:intergenic | 25.0% |
| ! | AAGGTAAGATGTTAACTATA+AGG | + | chr2_1:78116607-78116626 | None:intergenic | 25.0% |
| !! | ACCTTTTATAGATTTCAAGA+AGG | - | chr2_1:78116622-78116641 | Msa0227310:intron | 25.0% |
| ! | TCCTTCTTGAAATCTATAAA+AGG | + | chr2_1:78116626-78116645 | None:intergenic | 25.0% |
| ! | TTTATATACTTATAGCTGTC+TGG | + | chr2_1:78116814-78116833 | None:intergenic | 25.0% |
| ! | TATATAAACTTGCCTTGATT+TGG | - | chr2_1:78116826-78116845 | Msa0227310:intron | 25.0% |
| ! | TACAACGAAAATTTCAGAAA+CGG | + | chr2_1:78116870-78116889 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTTTCATTGGCTA+TGG | - | chr2_1:78117008-78117027 | Msa0227310:intron | 25.0% |
| !!! | TTTTAAGTTGTAACCTTCAT+GGG | - | chr2_1:78117063-78117082 | Msa0227310:intron | 25.0% |
| !!! | CTTCTCTTGTATTTCTATTT+TGG | + | chr2_1:78117221-78117240 | None:intergenic | 25.0% |
| ! | GTAGAAATAAGAATTAGGAT+AGG | + | chr2_1:78117307-78117326 | None:intergenic | 25.0% |
| ! | GACATGTAGAAATAAGAATT+AGG | + | chr2_1:78117312-78117331 | None:intergenic | 25.0% |
| !! | TAACTTATGTTCTAGCTATT+AGG | + | chr2_1:78117385-78117404 | None:intergenic | 25.0% |
| !! | ATTAGAAAAAGTTTGGTAAC+AGG | + | chr2_1:78117751-78117770 | None:intergenic | 25.0% |
| ! | GTTATTTAGTGAAACCTTAA+AGG | + | chr2_1:78118254-78118273 | None:intergenic | 25.0% |
| !! | GGTGCTTAATTTAAAATTAG+AGG | + | chr2_1:78118287-78118306 | None:intergenic | 25.0% |
| ! | ATTAACAACAACTAACCATA+AGG | + | chr2_1:78118308-78118327 | None:intergenic | 25.0% |
| !! | GAGATTTTAACACCTTCAAT+AGG | + | chr2_1:78113923-78113942 | None:intergenic | 30.0% |
| AATGATGCAGAGAAGAAATT+CGG | + | chr2_1:78113998-78114017 | None:intergenic | 30.0% | |
| ! | TTTTGACCTTGCTAAGTAAT+AGG | + | chr2_1:78114158-78114177 | None:intergenic | 30.0% |
| AATTGTGAAACTTCTACCTT+TGG | + | chr2_1:78114202-78114221 | None:intergenic | 30.0% | |
| AAGGTAGAAGTTTCACAATT+AGG | - | chr2_1:78114202-78114221 | Msa0227310:intron | 30.0% | |
| ! | CAACTTCAAACTACATTTTC+TGG | - | chr2_1:78114235-78114254 | Msa0227310:intron | 30.0% |
| AGATTCCAATGAGTTTAGTA+AGG | - | chr2_1:78114284-78114303 | Msa0227310:intron | 30.0% | |
| AGTTCACTAACCAAAAAGTT+AGG | - | chr2_1:78114312-78114331 | Msa0227310:intron | 30.0% | |
| GATACATCTATGATCTTTGA+AGG | - | chr2_1:78114612-78114631 | Msa0227310:intron | 30.0% | |
| TCTTTGTAAAGCCTGTAATA+AGG | + | chr2_1:78114691-78114710 | None:intergenic | 30.0% | |
| ATATAAGTTCCTTCAATTGG+TGG | + | chr2_1:78114751-78114770 | None:intergenic | 30.0% | |
| CAGATATAAGTTCCTTCAAT+TGG | + | chr2_1:78114754-78114773 | None:intergenic | 30.0% | |
| GAAGGAACTTATATCTGTTT+CGG | - | chr2_1:78114757-78114776 | Msa0227310:intron | 30.0% | |
| ! | TGACACTTGAATAGACATTT+TGG | - | chr2_1:78114914-78114933 | Msa0227310:intron | 30.0% |
| !! | TTGAATAGACATTTTGGAAG+AGG | - | chr2_1:78114920-78114939 | Msa0227310:intron | 30.0% |
| ACCTTATGAAAACAGCTTAT+AGG | - | chr2_1:78115289-78115308 | Msa0227310:intron | 30.0% | |
| !! | TCCTATAAGCTGTTTTCATA+AGG | + | chr2_1:78115293-78115312 | None:intergenic | 30.0% |
| ATTGCAATTAAGCGTTTCTA+AGG | + | chr2_1:78115387-78115406 | None:intergenic | 30.0% | |
| AATTGCAATGCTTATCCAAA+CGG | - | chr2_1:78115398-78115417 | Msa0227310:CDS | 30.0% | |
| CAACTCTAACTATTTGGTTA+AGG | - | chr2_1:78115526-78115545 | Msa0227310:intron | 30.0% | |
| !!! | TGGGATAATTTTGAGACTTT+GGG | + | chr2_1:78115746-78115765 | None:intergenic | 30.0% |
| !!! | ATGGGATAATTTTGAGACTT+TGG | + | chr2_1:78115747-78115766 | None:intergenic | 30.0% |
| !!! | AATTGATTGAAGGGCATTTT+AGG | - | chr2_1:78115931-78115950 | Msa0227310:intron | 30.0% |
| ! | ATTTTATGCAGAAGCCTATT+TGG | - | chr2_1:78116189-78116208 | Msa0227310:intron | 30.0% |
| TAAGATAGCCTACCAATATT+AGG | + | chr2_1:78116320-78116339 | None:intergenic | 30.0% | |
| ACTATCTGTAACAACTCATA+CGG | + | chr2_1:78116391-78116410 | None:intergenic | 30.0% | |
| TTTATGAGGAAATGCTGAAT+TGG | - | chr2_1:78116534-78116553 | Msa0227310:intron | 30.0% | |
| ! | AGAATTGCAACTACACATTT+TGG | - | chr2_1:78116664-78116683 | Msa0227310:intron | 30.0% |
| ACAACGAAAATTTCAGAAAC+GGG | + | chr2_1:78116869-78116888 | None:intergenic | 30.0% | |
| ! | AGCAACTTTGATTCACATTT+TGG | - | chr2_1:78116914-78116933 | Msa0227310:intron | 30.0% |
| AGAACCTTCTACAAATTTGT+TGG | - | chr2_1:78117035-78117054 | Msa0227310:intron | 30.0% | |
| CATACCAACAAATTTGTAGA+AGG | + | chr2_1:78117042-78117061 | None:intergenic | 30.0% | |
| !!! | CTTTTAAGTTGTAACCTTCA+TGG | - | chr2_1:78117062-78117081 | Msa0227310:intron | 30.0% |
| CAAAAGAATGAACTAACTTG+TGG | + | chr2_1:78117098-78117117 | None:intergenic | 30.0% | |
| AATCAGTTAAGGTTGTTTAC+TGG | + | chr2_1:78117173-78117192 | None:intergenic | 30.0% | |
| ! | TAAACAACCTTAACTGATTC+AGG | - | chr2_1:78117174-78117193 | Msa0227310:intron | 30.0% |
| ! | AAACAACCTTAACTGATTCA+GGG | - | chr2_1:78117175-78117194 | Msa0227310:intron | 30.0% |
| ATGTTCCAAGAGTTTACTAA+AGG | + | chr2_1:78117337-78117356 | None:intergenic | 30.0% | |
| ! | ACTCTTGGAACATTTTCATT+AGG | - | chr2_1:78117344-78117363 | Msa0227310:intron | 30.0% |
| CTTTCAATAAAACAAAACCC+TGG | + | chr2_1:78117570-78117589 | None:intergenic | 30.0% | |
| ! | AAGAGTTGATTATAACTCTC+TGG | - | chr2_1:78117587-78117606 | Msa0227310:intron | 30.0% |
| ! | AAAAAGTTTGGTAACAGGAT+TGG | + | chr2_1:78117746-78117765 | None:intergenic | 30.0% |
| ATGTTTGATGCTATGATTTC+TGG | + | chr2_1:78117803-78117822 | None:intergenic | 30.0% | |
| ! | CTTTTCCATAACTTGAAAGA+CGG | - | chr2_1:78117827-78117846 | Msa0227310:intron | 30.0% |
| AAAATGTACAAAGATACACC+AGG | + | chr2_1:78117855-78117874 | None:intergenic | 30.0% | |
| AAATGACTCTAATAGTGCTT+TGG | - | chr2_1:78117893-78117912 | Msa0227310:intron | 30.0% | |
| !! | CTTGATTGGTCTAATTTATG+AGG | - | chr2_1:78117919-78117938 | Msa0227310:intron | 30.0% |
| GTTAGTTCACCAAAATTGAT+AGG | - | chr2_1:78117949-78117968 | Msa0227310:intron | 30.0% | |
| !! | TAAAAGAGAAGCATTGTCTT+TGG | + | chr2_1:78118014-78118033 | None:intergenic | 30.0% |
| CTGAAAAGAAAAGAGAAAGT+AGG | + | chr2_1:78118103-78118122 | None:intergenic | 30.0% | |
| ! | CTACTTTCTCTTTTCTTTTC+AGG | - | chr2_1:78118101-78118120 | Msa0227310:intron | 30.0% |
| AAATTGCACTAACTCCTTTA+AGG | - | chr2_1:78118237-78118256 | Msa0227310:five_prime_UTR | 30.0% | |
| AACGTGTTTAAGCCGATTAA+CGG | + | chr2_1:78113783-78113802 | None:intergenic | 35.0% | |
| TCAATAGGCAGAAGAAGATT+GGG | + | chr2_1:78113908-78113927 | None:intergenic | 35.0% | |
| TTCAATAGGCAGAAGAAGAT+TGG | + | chr2_1:78113909-78113928 | None:intergenic | 35.0% | |
| AATCTTCTTCTGCCTATTGA+AGG | - | chr2_1:78113908-78113927 | Msa0227310:three_prime_UTR | 35.0% | |
| ATGATGCAGAGAAGAAATTC+GGG | + | chr2_1:78113997-78114016 | None:intergenic | 35.0% | |
| ! | TTGGCTCGTCTTAAATCTAA+GGG | + | chr2_1:78114042-78114061 | None:intergenic | 35.0% |
| ! | TTAGATTTAAGACGAGCCAA+GGG | - | chr2_1:78114042-78114061 | Msa0227310:intron | 35.0% |
| TAGGATCCTATTACTTAGCA+AGG | - | chr2_1:78114149-78114168 | Msa0227310:intron | 35.0% | |
| TGTCTGTATATGCAATGAAG+TGG | - | chr2_1:78114369-78114388 | Msa0227310:intron | 35.0% | |
| GTCTGTATATGCAATGAAGT+GGG | - | chr2_1:78114370-78114389 | Msa0227310:intron | 35.0% | |
| !! | CATTGTTTGCATTGATGATG+AGG | + | chr2_1:78114423-78114442 | None:intergenic | 35.0% |
| ! | TGCAATTTTCGTTCCTGTTA+TGG | - | chr2_1:78114470-78114489 | Msa0227310:intron | 35.0% |
| GTTCCTGTTATGGTTAAGTT+GGG | - | chr2_1:78114480-78114499 | Msa0227310:intron | 35.0% | |
| AAACCCAACTTAACCATAAC+AGG | + | chr2_1:78114486-78114505 | None:intergenic | 35.0% | |
| TTGTAAAGCCTGTAATAAGG+TGG | + | chr2_1:78114688-78114707 | None:intergenic | 35.0% | |
| ! | CAAGTGTCATTGTAATAGCA+GGG | + | chr2_1:78114903-78114922 | None:intergenic | 35.0% |
| ! | TCAAGTGTCATTGTAATAGC+AGG | + | chr2_1:78114904-78114923 | None:intergenic | 35.0% |
| CACATGCCAAAGCTAAAATT+AGG | + | chr2_1:78115012-78115031 | None:intergenic | 35.0% | |
| ! | TGTGCGTTATTCTAAAAGCT+TGG | - | chr2_1:78115028-78115047 | Msa0227310:intron | 35.0% |
| ! | TCTAAAAGCTTGGAGCTTTT+TGG | - | chr2_1:78115038-78115057 | Msa0227310:intron | 35.0% |
| !! | ATTTTTCAAAGTGTTTGGGG+TGG | - | chr2_1:78115168-78115187 | Msa0227310:intron | 35.0% |
| !! | TTAAGCGTTTCTAAGGCAAA+GGG | + | chr2_1:78115380-78115399 | None:intergenic | 35.0% |
| !! | ATTAAGCGTTTCTAAGGCAA+AGG | + | chr2_1:78115381-78115400 | None:intergenic | 35.0% |
| ATTGCAATGCTTATCCAAAC+GGG | - | chr2_1:78115399-78115418 | Msa0227310:CDS | 35.0% | |
| AAGCCCAAAGACTTCAAAAA+TGG | - | chr2_1:78115659-78115678 | Msa0227310:intron | 35.0% | |
| TATCGGTATCAGATACATGT+TGG | + | chr2_1:78115698-78115717 | None:intergenic | 35.0% | |
| CGGTAGTATCAAATGTGTAT+CGG | + | chr2_1:78115715-78115734 | None:intergenic | 35.0% | |
| CGATACACATTTGATACTAC+CGG | - | chr2_1:78115713-78115732 | Msa0227310:intron | 35.0% | |
| !!! | TACATCTTCGATAGTTTTGG+TGG | - | chr2_1:78115814-78115833 | Msa0227310:intron | 35.0% |
| !!! | ACATCTTCGATAGTTTTGGT+GGG | - | chr2_1:78115815-78115834 | Msa0227310:intron | 35.0% |
| ACAGCAAAAAAATCCAGGTT+TGG | + | chr2_1:78116011-78116030 | None:intergenic | 35.0% | |
| ! | TGCTGTTTATATCTGTGATC+AGG | - | chr2_1:78116025-78116044 | Msa0227310:intron | 35.0% |
| TCAACCTTTCTCAAGGTTTA+TGG | + | chr2_1:78116094-78116113 | None:intergenic | 35.0% | |
| !! | TAGGTCCTTTAGAATAGAGT+TGG | + | chr2_1:78116301-78116320 | None:intergenic | 35.0% |
| CTAAAGGACCTAATATTGGT+AGG | - | chr2_1:78116309-78116328 | Msa0227310:intron | 35.0% | |
| GTTGTTACAGATAGTTGTGA+AGG | - | chr2_1:78116396-78116415 | Msa0227310:intron | 35.0% | |
| ACTATACACGGTCACATATT+AGG | + | chr2_1:78116436-78116455 | None:intergenic | 35.0% | |
| AGACTCTAATTTCTTCACAC+TGG | - | chr2_1:78117141-78117160 | Msa0227310:intron | 35.0% | |
| GACTCTAATTTCTTCACACT+GGG | - | chr2_1:78117142-78117161 | Msa0227310:intron | 35.0% | |
| TGAATTCCCTGAATCAGTTA+AGG | + | chr2_1:78117184-78117203 | None:intergenic | 35.0% | |
| TGCTAGTTAGTTGTTGTATC+TGG | + | chr2_1:78117280-78117299 | None:intergenic | 35.0% | |
| GTCTTCCTTTAGTAAACTCT+TGG | - | chr2_1:78117329-78117348 | Msa0227310:intron | 35.0% | |
| ! | TTATGTTCTAGCTATTAGGC+AGG | + | chr2_1:78117381-78117400 | None:intergenic | 35.0% |
| ! | CACTTTCCCATTTTAAACTG+CGG | - | chr2_1:78117653-78117672 | Msa0227310:intron | 35.0% |
| ! | TTCCATCCGCAGTTTAAAAT+GGG | + | chr2_1:78117662-78117681 | None:intergenic | 35.0% |
| !! | CGTCTTTCAAGTTATGGAAA+AGG | + | chr2_1:78117829-78117848 | None:intergenic | 35.0% |
| !! | TAGTGCTTTGGAAACTTGAT+TGG | - | chr2_1:78117905-78117924 | Msa0227310:intron | 35.0% |
| ! | ATGGTTGCTCCTATCAATTT+TGG | + | chr2_1:78117961-78117980 | None:intergenic | 35.0% |
| !! | CTTTCTCTTTTCTTTTCAGG+AGG | - | chr2_1:78118104-78118123 | Msa0227310:intron | 35.0% |
| AAGAATCCTTAACGAGTCAT+TGG | - | chr2_1:78118141-78118160 | Msa0227310:intron | 35.0% | |
| AGACAATCATGACAACCTTA+AGG | - | chr2_1:78118212-78118231 | Msa0227310:five_prime_UTR | 35.0% | |
| GACAATCATGACAACCTTAA+GGG | - | chr2_1:78118213-78118232 | Msa0227310:five_prime_UTR | 35.0% | |
| ! | GTTAGTGCAATTTTCCCTTA+AGG | + | chr2_1:78118230-78118249 | None:intergenic | 35.0% |
| TGCTGCACTAATCCGTTAAT+CGG | - | chr2_1:78113768-78113787 | Msa0227310:three_prime_UTR | 40.0% | |
| GAGCTGTACTCCATTTAAAG+CGG | - | chr2_1:78113838-78113857 | Msa0227310:three_prime_UTR | 40.0% | |
| ! | AGCTGTACTCCATTTAAAGC+GGG | - | chr2_1:78113839-78113858 | Msa0227310:three_prime_UTR | 40.0% |
| AATAGGCAGAAGAAGATTGG+GGG | + | chr2_1:78113906-78113925 | None:intergenic | 40.0% | |
| CAATAGGCAGAAGAAGATTG+GGG | + | chr2_1:78113907-78113926 | None:intergenic | 40.0% | |
| TGTTCAAGAATCACTGTGCA+TGG | + | chr2_1:78113949-78113968 | None:intergenic | 40.0% | |
| ! | CTTGGCTCGTCTTAAATCTA+AGG | + | chr2_1:78114043-78114062 | None:intergenic | 40.0% |
| ! | CTTAGATTTAAGACGAGCCA+AGG | - | chr2_1:78114041-78114060 | Msa0227310:intron | 40.0% |
| ! | TTTTGCTCTTGCAAATCCCT+TGG | + | chr2_1:78114061-78114080 | None:intergenic | 40.0% |
| CGTTCCTGTTATGGTTAAGT+TGG | - | chr2_1:78114479-78114498 | Msa0227310:intron | 40.0% | |
| ! | AATGAGACATGAAGAGTGCA+TGG | + | chr2_1:78114558-78114577 | None:intergenic | 40.0% |
| TAAAGCCTGTAATAAGGTGG+TGG | + | chr2_1:78114685-78114704 | None:intergenic | 40.0% | |
| TAAGTTCCTTCAATTGGTGG+TGG | + | chr2_1:78114748-78114767 | None:intergenic | 40.0% | |
| GGAACTTATATCTGTTTCGG+AGG | - | chr2_1:78114760-78114779 | Msa0227310:intron | 40.0% | |
| AGTCGTGAAATCAACCTCAT+GGG | + | chr2_1:78115476-78115495 | None:intergenic | 40.0% | |
| TGGCAGCAACTCTAACTATT+TGG | - | chr2_1:78115520-78115539 | Msa0227310:intron | 40.0% | |
| ! | TTTGAAGTCTTTGGGCTTCA+TGG | + | chr2_1:78115657-78115676 | None:intergenic | 40.0% |
| CACATTTGATACTACCGGAT+AGG | - | chr2_1:78115718-78115737 | Msa0227310:intron | 40.0% | |
| !!! | CATCTTCGATAGTTTTGGTG+GGG | - | chr2_1:78115816-78115835 | Msa0227310:intron | 40.0% |
| !! | ATATTTTGGACCACCAAACC+TGG | - | chr2_1:78115995-78116014 | Msa0227310:intron | 40.0% |
| GCAAAAAAATCCAGGTTTGG+TGG | + | chr2_1:78116008-78116027 | None:intergenic | 40.0% | |
| !! | ATCAGGTTGAGTTCAGTCTA+GGG | - | chr2_1:78116042-78116061 | Msa0227310:intron | 40.0% |
| TCAAGGTTTATGGTTGGATG+AGG | + | chr2_1:78116084-78116103 | None:intergenic | 40.0% | |
| CCTTTCTCAAGGTTTATGGT+TGG | + | chr2_1:78116090-78116109 | None:intergenic | 40.0% | |
| CCAACCATAAACCTTGAGAA+AGG | - | chr2_1:78116087-78116106 | Msa0227310:intron | 40.0% | |
| ACTGAACTCAACCTTTCTCA+AGG | + | chr2_1:78116101-78116120 | None:intergenic | 40.0% | |
| TGAGTTCAGTCTTGCAAAAC+AGG | - | chr2_1:78116111-78116130 | Msa0227310:intron | 40.0% | |
| GAGTTCAGTCTTGCAAAACA+GGG | - | chr2_1:78116112-78116131 | Msa0227310:intron | 40.0% | |
| ACGATATGATCACGCCAAAT+AGG | + | chr2_1:78116206-78116225 | None:intergenic | 40.0% | |
| TAGTGATGTTCTACCAAGCT+TGG | - | chr2_1:78116259-78116278 | Msa0227310:intron | 40.0% | |
| TACCAAGCTTGGAAGAACAA+GGG | - | chr2_1:78116270-78116289 | Msa0227310:intron | 40.0% | |
| GTACGCCAACTCTATTCTAA+AGG | - | chr2_1:78116293-78116312 | Msa0227310:intron | 40.0% | |
| TATGTGACCGTGTATAGTCT+AGG | - | chr2_1:78116438-78116457 | Msa0227310:intron | 40.0% | |
| CACAAGTCCTAGACTATACA+CGG | + | chr2_1:78116448-78116467 | None:intergenic | 40.0% | |
| ! | GTGTATAGTCTAGGACTTGT+GGG | - | chr2_1:78116447-78116466 | Msa0227310:intron | 40.0% |
| TAGATTTCAAGAAGGAGCTG+AGG | - | chr2_1:78116630-78116649 | Msa0227310:intron | 40.0% | |
| AGAGACCATCACAATATGCA+AGG | - | chr2_1:78116708-78116727 | Msa0227310:intron | 40.0% | |
| ACTCTCCTTGCATATTGTGA+TGG | + | chr2_1:78116716-78116735 | None:intergenic | 40.0% | |
| GGAACATTGTATACCTGATG+AGG | + | chr2_1:78116793-78116812 | None:intergenic | 40.0% | |
| AAGCTGTGGAGGACATAAAT+AGG | - | chr2_1:78116961-78116980 | Msa0227310:intron | 40.0% | |
| GTGGATTTAGAAACCCATGA+AGG | + | chr2_1:78117079-78117098 | None:intergenic | 40.0% | |
| TGTATCTGGTGAGTCAGTTA+AGG | + | chr2_1:78117266-78117285 | None:intergenic | 40.0% | |
| ATGCAAAACCGACGAATCTA+AGG | - | chr2_1:78117503-78117522 | Msa0227310:five_prime_UTR | 40.0% | |
| ATGGGTGTATGAACCTATGA+GGG | + | chr2_1:78117538-78117557 | None:intergenic | 40.0% | |
| ! | TTCCCATTTTAAACTGCGGA+TGG | - | chr2_1:78117657-78117676 | Msa0227310:intron | 40.0% |
| CTTCCATCCGCAGTTTAAAA+TGG | + | chr2_1:78117663-78117682 | None:intergenic | 40.0% | |
| !! | GATGCTATGATTTCTGGTTC+TGG | + | chr2_1:78117797-78117816 | None:intergenic | 40.0% |
| !! | AGGAACCGTCTTTCAAGTTA+TGG | + | chr2_1:78117835-78117854 | None:intergenic | 40.0% |
| ATAACTTGAAAGACGGTTCC+TGG | - | chr2_1:78117834-78117853 | Msa0227310:intron | 40.0% | |
| TGACAAAACTGGGCAAAGAA+GGG | + | chr2_1:78117988-78118007 | None:intergenic | 40.0% | |
| ATGACAAAACTGGGCAAAGA+AGG | + | chr2_1:78117989-78118008 | None:intergenic | 40.0% | |
| !! | TTCTTTGCCCAGTTTTGTCA+TGG | - | chr2_1:78117988-78118007 | Msa0227310:intron | 40.0% |
| TCTTTGGCCATGACAAAACT+GGG | + | chr2_1:78117998-78118017 | None:intergenic | 40.0% | |
| !! | GTTTTGACCGCTCTCTGTTT+CGG | - | chr2_1:78113811-78113830 | Msa0227310:three_prime_UTR | 45.0% |
| CAAGAATCACTGTGCATGGT+TGG | + | chr2_1:78113945-78113964 | None:intergenic | 45.0% | |
| AAATTCGGGAGGAGCTTACT+AGG | + | chr2_1:78113983-78114002 | None:intergenic | 45.0% | |
| ATGCAGAGAAGAAATTCGGG+AGG | + | chr2_1:78113994-78114013 | None:intergenic | 45.0% | |
| !! | TGTAATAAGGTGGTGGTGGT+GGG | + | chr2_1:78114678-78114697 | None:intergenic | 45.0% |
| CATGACAACTTTGCTGCGTT+TGG | - | chr2_1:78115115-78115134 | Msa0227310:intron | 45.0% | |
| GTTAGAGTAAGCTCCCATCA+TGG | - | chr2_1:78115428-78115447 | Msa0227310:CDS | 45.0% | |
| TCCTTAAACCCTGCCATGAT+GGG | + | chr2_1:78115444-78115463 | None:intergenic | 45.0% | |
| TTCCTTAAACCCTGCCATGA+TGG | + | chr2_1:78115445-78115464 | None:intergenic | 45.0% | |
| TCATGGCAGGGTTTAAGGAA+TGG | - | chr2_1:78115445-78115464 | Msa0227310:CDS | 45.0% | |
| AAGGAATGGTTAGACCCATG+AGG | - | chr2_1:78115459-78115478 | Msa0227310:CDS | 45.0% | |
| GAGTCGTGAAATCAACCTCA+TGG | + | chr2_1:78115477-78115496 | None:intergenic | 45.0% | |
| ACTCAAATGAGTGACCTCCT+AGG | - | chr2_1:78115493-78115512 | Msa0227310:CDS | 45.0% | |
| AAGTCTTTGGGCTTCATGGA+TGG | + | chr2_1:78115653-78115672 | None:intergenic | 45.0% | |
| TGAGACTTTGGGTACCTATC+CGG | + | chr2_1:78115735-78115754 | None:intergenic | 45.0% | |
| !! | GATCAGGTTGAGTTCAGTCT+AGG | - | chr2_1:78116041-78116060 | Msa0227310:intron | 45.0% |
| TTATGGTTGGATGAGGCACA+TGG | + | chr2_1:78116077-78116096 | None:intergenic | 45.0% | |
| CTACCAAGCTTGGAAGAACA+AGG | - | chr2_1:78116269-78116288 | Msa0227310:intron | 45.0% | |
| ACCAAGCTTGGAAGAACAAG+GGG | - | chr2_1:78116271-78116290 | Msa0227310:intron | 45.0% | |
| ! | CGTGTATAGTCTAGGACTTG+TGG | - | chr2_1:78116446-78116465 | Msa0227310:intron | 45.0% |
| ! | ACTTGTGGGCCTGATCTTTT+AGG | - | chr2_1:78116461-78116480 | Msa0227310:intron | 45.0% |
| CTAGTAGAGACACCATGCAT+TGG | + | chr2_1:78116571-78116590 | None:intergenic | 45.0% | |
| AAGGAGCTGAGGTCACTTAA+TGG | - | chr2_1:78116641-78116660 | Msa0227310:intron | 45.0% | |
| GAGGACGCAGTGAATTCAAA+AGG | + | chr2_1:78116774-78116793 | None:intergenic | 45.0% | |
| !! | TGCCTTGATTTGGATGCTTC+TGG | - | chr2_1:78116836-78116855 | Msa0227310:intron | 45.0% |
| !! | GACCAGAAGCATCCAAATCA+AGG | + | chr2_1:78116841-78116860 | None:intergenic | 45.0% |
| ! | TGTCCTCCACAGCTTGTTTA+CGG | + | chr2_1:78116956-78116975 | None:intergenic | 45.0% |
| GGTGAGTCAGTTAAGGTTGT+TGG | + | chr2_1:78117259-78117278 | None:intergenic | 45.0% | |
| ! | AAACCGACGAATCTAAGGCT+TGG | - | chr2_1:78117508-78117527 | Msa0227310:five_prime_UTR | 45.0% |
| CATGGGTGTATGAACCTATG+AGG | + | chr2_1:78117539-78117558 | None:intergenic | 45.0% | |
| CTCATAGGTTCATACACCCA+TGG | - | chr2_1:78117537-78117556 | Msa0227310:five_prime_UTR | 45.0% | |
| AAACCCTGGTAAGTAGCCAT+GGG | + | chr2_1:78117556-78117575 | None:intergenic | 45.0% | |
| AAAACCCTGGTAAGTAGCCA+TGG | + | chr2_1:78117557-78117576 | None:intergenic | 45.0% | |
| GTCTTTGGCCATGACAAAAC+TGG | + | chr2_1:78117999-78118018 | None:intergenic | 45.0% | |
| GTGTTGCCAATGACTCGTTA+AGG | + | chr2_1:78118150-78118169 | None:intergenic | 45.0% | |
| GAGTCATTGGCAACACTTGA+TGG | - | chr2_1:78118154-78118173 | Msa0227310:intron | 45.0% | |
| CTCCAAACCGAAACAGAGAG+CGG | + | chr2_1:78113821-78113840 | None:intergenic | 50.0% | |
| !! | CTGTAATAAGGTGGTGGTGG+TGG | + | chr2_1:78114679-78114698 | None:intergenic | 50.0% |
| CACCACCACCACCTTATTAC+AGG | - | chr2_1:78114677-78114696 | Msa0227310:intron | 50.0% | |
| ! | AGCCTGTAATAAGGTGGTGG+TGG | + | chr2_1:78114682-78114701 | None:intergenic | 50.0% |
| !! | GTTCCTTCAATTGGTGGTGG+AGG | + | chr2_1:78114745-78114764 | None:intergenic | 50.0% |
| AATGCTTATCCAAACGGGCC+TGG | - | chr2_1:78115404-78115423 | Msa0227310:CDS | 50.0% | |
| TGGGAGCTTACTCTAACACC+AGG | + | chr2_1:78115425-78115444 | None:intergenic | 50.0% | |
| AGTAAGCTCCCATCATGGCA+GGG | - | chr2_1:78115433-78115452 | Msa0227310:CDS | 50.0% | |
| TCCCATCATGGCAGGGTTTA+AGG | - | chr2_1:78115440-78115459 | Msa0227310:CDS | 50.0% | |
| TGAGTGACCTCCTAGGCATA+TGG | - | chr2_1:78115500-78115519 | Msa0227310:CDS | 50.0% | |
| AGAGTTGCTGCCATATGCCT+AGG | + | chr2_1:78115513-78115532 | None:intergenic | 50.0% | |
| !!! | CGATAGTTTTGGTGGGGACA+AGG | - | chr2_1:78115822-78115841 | Msa0227310:intron | 50.0% |
| !! | GTTTTGGTGGGGACAAGGAT+TGG | - | chr2_1:78115827-78115846 | Msa0227310:intron | 50.0% |
| ACCCCTTGTTCTTCCAAGCT+TGG | + | chr2_1:78116275-78116294 | None:intergenic | 50.0% | |
| !! | GTCACAAAAGCGCCAATGCA+TGG | - | chr2_1:78116556-78116575 | Msa0227310:intron | 50.0% |
| GAATTCACTGCGTCCTCATC+AGG | - | chr2_1:78116777-78116796 | Msa0227310:intron | 50.0% | |
| GGACCAAGCCTTAGATTCGT+CGG | + | chr2_1:78117514-78117533 | None:intergenic | 50.0% | |
| GGTGTATGAACCTATGAGGG+AGG | + | chr2_1:78117535-78117554 | None:intergenic | 50.0% | |
| TACACCCATGGCTACTTACC+AGG | - | chr2_1:78117549-78117568 | Msa0227310:intron | 50.0% | |
| ACACCCATGGCTACTTACCA+GGG | - | chr2_1:78117550-78117569 | Msa0227310:intron | 50.0% | |
| CTGGGCAAAGAAGGGAGAAA+TGG | + | chr2_1:78117980-78117999 | None:intergenic | 50.0% | |
| GACCGCTCTCTGTTTCGGTT+TGG | - | chr2_1:78113816-78113835 | Msa0227310:three_prime_UTR | 55.0% | |
| CGGGAGGAGCTTACTAGGTT+TGG | + | chr2_1:78113978-78113997 | None:intergenic | 55.0% | |
| !! | TCAATTGGTGGTGGAGGCTC+TGG | + | chr2_1:78114739-78114758 | None:intergenic | 55.0% |
| GAGCCTCCACCACCAATTGA+AGG | - | chr2_1:78114739-78114758 | Msa0227310:intron | 55.0% | |
| ACTCTAACACCAGGCCCGTT+TGG | + | chr2_1:78115416-78115435 | None:intergenic | 55.0% | |
| GAGTAAGCTCCCATCATGGC+AGG | - | chr2_1:78115432-78115451 | Msa0227310:CDS | 55.0% | |
| GTTGCTGCCATATGCCTAGG+AGG | + | chr2_1:78115510-78115529 | None:intergenic | 55.0% | |
| !! | AGAGCGCCGTAAACAAGCTG+TGG | - | chr2_1:78116947-78116966 | Msa0227310:intron | 55.0% |
| ! | AAGGCTTGGTCCTCCCTCAT+AGG | - | chr2_1:78117522-78117541 | Msa0227310:five_prime_UTR | 55.0% |
| !! | GAGGCTCTGGAGCAGACTCA+GGG | + | chr2_1:78114726-78114745 | None:intergenic | 60.0% |
| GCGCCGTAAACAAGCTGTGG+AGG | - | chr2_1:78116950-78116969 | Msa0227310:intron | 60.0% | |
| !! | GGAGGCTCTGGAGCAGACTC+AGG | + | chr2_1:78114727-78114746 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78113743 | 78118417 | 78113743 | ID=Msa0227310;Name=Msa0227310 |
| chr2_1 | mRNA | 78113743 | 78118417 | 78113743 | ID=Msa0227310-mRNA-1;Parent=Msa0227310;Name=Msa0227310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=300|1|1|1|0.6|0.5|6|389|116 |
| chr2_1 | exon | 78113743 | 78114037 | 78113743 | ID=Msa0227310-mRNA-1:exon:23835;Parent=Msa0227310-mRNA-1 |
| chr2_1 | exon | 78115178 | 78115251 | 78115178 | ID=Msa0227310-mRNA-1:exon:23834;Parent=Msa0227310-mRNA-1 |
| chr2_1 | exon | 78115362 | 78115527 | 78115362 | ID=Msa0227310-mRNA-1:exon:23833;Parent=Msa0227310-mRNA-1 |
| chr2_1 | exon | 78115834 | 78115903 | 78115834 | ID=Msa0227310-mRNA-1:exon:23832;Parent=Msa0227310-mRNA-1 |
| chr2_1 | exon | 78117368 | 78117561 | 78117368 | ID=Msa0227310-mRNA-1:exon:23831;Parent=Msa0227310-mRNA-1 |
| chr2_1 | exon | 78118177 | 78118417 | 78118177 | ID=Msa0227310-mRNA-1:exon:23830;Parent=Msa0227310-mRNA-1 |
| chr2_1 | five_prime_UTR | 78118177 | 78118417 | 78118177 | ID=Msa0227310-mRNA-1:five_prime_utr;Parent=Msa0227310-mRNA-1 |
| chr2_1 | five_prime_UTR | 78117503 | 78117561 | 78117503 | ID=Msa0227310-mRNA-1:five_prime_utr;Parent=Msa0227310-mRNA-1 |
| chr2_1 | CDS | 78117368 | 78117502 | 78117368 | ID=Msa0227310-mRNA-1:cds;Parent=Msa0227310-mRNA-1 |
| chr2_1 | CDS | 78115834 | 78115903 | 78115834 | ID=Msa0227310-mRNA-1:cds;Parent=Msa0227310-mRNA-1 |
| chr2_1 | CDS | 78115382 | 78115527 | 78115382 | ID=Msa0227310-mRNA-1:cds;Parent=Msa0227310-mRNA-1 |
| chr2_1 | three_prime_UTR | 78115362 | 78115381 | 78115362 | ID=Msa0227310-mRNA-1:three_prime_utr;Parent=Msa0227310-mRNA-1 |
| chr2_1 | three_prime_UTR | 78115178 | 78115251 | 78115178 | ID=Msa0227310-mRNA-1:three_prime_utr;Parent=Msa0227310-mRNA-1 |
| chr2_1 | three_prime_UTR | 78113743 | 78114037 | 78113743 | ID=Msa0227310-mRNA-1:three_prime_utr;Parent=Msa0227310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
