AlfalfaGEDB | Msa0227310

M. sativa cultivar zhongmu-4 / Msa0227310

KEGG: K15148
GO: GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05983.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0227310	XP_013465303.1	99.115	113	1	0	1	113	1	113	1.52e-75	231

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0227310	sp\|Q9LZD7\|MED7B_ARATH	77.876	113	25	0	1	113	1	113	1.45e-54	171

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0227310	I3T127	99.115	113	1	0	1	113	1	113	7.28e-76	231

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0227310	TR	MED7

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0227310	0.856008	4.300879e-62	-8.615850e-47
Msa0006880	Msa0227310	-0.800591	1.341159e-48	-8.615850e-47
Msa0021090	Msa0227310	0.824901	6.278291e-54	-8.615850e-47
Msa0027580	Msa0227310	-0.822613	2.157380e-53	-8.615850e-47
Msa0036370	Msa0227310	-0.812010	5.256843e-51	-8.615850e-47
Msa0072170	Msa0227310	-0.820383	7.061934e-53	-8.615850e-47
Msa0075340	Msa0227310	-0.823612	1.261151e-53	-8.615850e-47
Msa0094010	Msa0227310	-0.816338	5.822218e-52	-8.615850e-47
Msa0100800	Msa0227310	-0.815841	7.519484e-52	-8.615850e-47
Msa0120540	Msa0227310	-0.824815	6.579500e-54	-8.615850e-47

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0227310	MtrunA17_Chr2g0326811	99.115	113	1	0	1	113	1	113	1.40e-79	231
Msa0227310	MtrunA17_Chr6g0478701	99.115	113	1	0	1	113	1	113	1.43e-79	231

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0227310	AT5G03500.3	77.876	113	25	1	113	1	113	1.47e-55	171
Msa0227310	AT5G03500.4	77.876	113	25	1	113	1	113	1.47e-55	171
Msa0227310	AT5G03500.2	77.876	113	25	1	113	1	113	1.47e-55	171
Msa0227310	AT5G03500.5	77.876	113	25	1	113	1	113	1.47e-55	171
Msa0227310	AT5G03500.7	77.876	113	25	1	113	1	113	1.47e-55	171
Msa0227310	AT5G03500.1	77.876	113	25	1	113	1	113	1.47e-55	171
Msa0227310	AT5G03500.6	78.571	112	24	1	112	11	122	1.58e-55	171
Msa0227310	AT5G03220.1	78.761	113	24	1	113	1	113	1.54e-50	158

Showing 1 to 8 of 8 entries

Previous1Next

Find 68 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGCACTAACTCCTTTA+AGG	0.149872	2_1:-78113901	Msa0227310:three_prime_UTR
AACGTGTTTAAGCCGATTAA+CGG	0.328027	2_1:+78118358	None:intergenic
AAGAATCCTTAACGAGTCAT+TGG	0.477983	2_1:-78113997	Msa0227310:three_prime_UTR
AAGCTGTGGAGGACATAAAT+AGG	0.396665	2_1:-78115177	Msa0227310:intron
AAGGAGCTGAGGTCACTTAA+TGG	0.305351	2_1:-78115497	Msa0227310:CDS
AATAGGCAGAAGAAGATTGG+GGG	0.709557	2_1:+78118235	None:intergenic
AATCTTCTTCTGCCTATTGA+AGG	0.388386	2_1:-78118230	Msa0227310:five_prime_UTR
ACCAAGCTTGGAAGAACAAG+GGG	0.614422	2_1:-78115867	Msa0227310:CDS
ACCCCTTGTTCTTCCAAGCT+TGG	0.438251	2_1:+78115866	None:intergenic
ACTCTCCTTGCATATTGTGA+TGG	0.520397	2_1:+78115425	None:intergenic

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGATGCAGAGAAGAAATT+CGG	+	chr2_1:78113998-78114017	None:intergenic	30.0%
AATTGTGAAACTTCTACCTT+TGG	+	chr2_1:78114202-78114221	None:intergenic	30.0%
AAGGTAGAAGTTTCACAATT+AGG	-	chr2_1:78114202-78114221	Msa0227310:intron	30.0%
AGATTCCAATGAGTTTAGTA+AGG	-	chr2_1:78114284-78114303	Msa0227310:intron	30.0%
AGTTCACTAACCAAAAAGTT+AGG	-	chr2_1:78114312-78114331	Msa0227310:intron	30.0%
GATACATCTATGATCTTTGA+AGG	-	chr2_1:78114612-78114631	Msa0227310:intron	30.0%
TCTTTGTAAAGCCTGTAATA+AGG	+	chr2_1:78114691-78114710	None:intergenic	30.0%
ATATAAGTTCCTTCAATTGG+TGG	+	chr2_1:78114751-78114770	None:intergenic	30.0%
CAGATATAAGTTCCTTCAAT+TGG	+	chr2_1:78114754-78114773	None:intergenic	30.0%
GAAGGAACTTATATCTGTTT+CGG	-	chr2_1:78114757-78114776	Msa0227310:intron	30.0%

Showing 1 to 10 of 314 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	78113743	78118417	78113743	ID=Msa0227310;Name=Msa0227310
chr2_1	mRNA	78113743	78118417	78113743	ID=Msa0227310-mRNA-1;Parent=Msa0227310;Name=Msa0227310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=300\|1\|1\|1\|0.6\|0.5\|6\|389\|116
chr2_1	exon	78113743	78114037	78113743	ID=Msa0227310-mRNA-1:exon:23835;Parent=Msa0227310-mRNA-1
chr2_1	exon	78115178	78115251	78115178	ID=Msa0227310-mRNA-1:exon:23834;Parent=Msa0227310-mRNA-1
chr2_1	exon	78115362	78115527	78115362	ID=Msa0227310-mRNA-1:exon:23833;Parent=Msa0227310-mRNA-1
chr2_1	exon	78115834	78115903	78115834	ID=Msa0227310-mRNA-1:exon:23832;Parent=Msa0227310-mRNA-1
chr2_1	exon	78117368	78117561	78117368	ID=Msa0227310-mRNA-1:exon:23831;Parent=Msa0227310-mRNA-1
chr2_1	exon	78118177	78118417	78118177	ID=Msa0227310-mRNA-1:exon:23830;Parent=Msa0227310-mRNA-1
chr2_1	five_prime_UTR	78118177	78118417	78118177	ID=Msa0227310-mRNA-1:five_prime_utr;Parent=Msa0227310-mRNA-1
chr2_1	five_prime_UTR	78117503	78117561	78117503	ID=Msa0227310-mRNA-1:five_prime_utr;Parent=Msa0227310-mRNA-1
chr2_1	CDS	78117368	78117502	78117368	ID=Msa0227310-mRNA-1:cds;Parent=Msa0227310-mRNA-1
chr2_1	CDS	78115834	78115903	78115834	ID=Msa0227310-mRNA-1:cds;Parent=Msa0227310-mRNA-1
chr2_1	CDS	78115382	78115527	78115382	ID=Msa0227310-mRNA-1:cds;Parent=Msa0227310-mRNA-1
chr2_1	three_prime_UTR	78115362	78115381	78115362	ID=Msa0227310-mRNA-1:three_prime_utr;Parent=Msa0227310-mRNA-1
chr2_1	three_prime_UTR	78115178	78115251	78115178	ID=Msa0227310-mRNA-1:three_prime_utr;Parent=Msa0227310-mRNA-1
chr2_1	three_prime_UTR	78113743	78114037	78113743	ID=Msa0227310-mRNA-1:three_prime_utr;Parent=Msa0227310-mRNA-1

Gene Sequence	>Msa0227310 ATGGCAACGGCAACATACCCACCACCACCACCTTATTACAGGCTTTACAAAGATTATGTGCAAGACCCTGAGTCTGCTCCAGAGCCTCCACCACCAATTGAAGGAACTTATATCTGTTTCGGAGGCAGTTACACTACTAGTGATGTTCTACCAAGCTTGGAAGAACAAGGGGTACGCCAACTCTATTCTAAAGGACCTAATATTGATTTCAAGAAGGAGCTGAGGTCACTTAATGGAGAATTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAATATGCAAGGAGAGTCGAAGAAATTTCAACTGTGTTCAAAAATTGCATCACCTTTTGA
Protein sequence	>Msa0227310 MATATYPPPPPYYRLYKDYVQDPESAPEPPPPIEGTYICFGGSYTTSDVLPSLEEQGVRQLYSKGPNIDFKKELRSLNGELQLHILELADILIERPSQYARRVEEISTVFKNCITF*