Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175120 | G7L969 | 96.438 | 393 | 10 | 1 | 6 | 394 | 1 | 393 | 0.0 | 778 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0689830 | Msa1175120 | 0.824124 | 9.566648e-54 | -8.615850e-47 |
| Msa0903340 | Msa1175120 | 0.802260 | 6.103539e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175120 | MtrunA17_Chr8g0345191 | 96.438 | 393 | 10 | 1 | 6 | 394 | 1 | 393 | 0.0 | 778 |
| Msa1175120 | MtrunA17_Chr8g0375241 | 27.829 | 327 | 174 | 15 | 98 | 394 | 145 | 439 | 1.60e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175120 | AT1G53860.1 | 40.587 | 409 | 139 | 20 | 21 | 394 | 32 | 371 | 1.35e-67 | 222 |
| Msa1175120 | AT1G53860.2 | 42.982 | 342 | 112 | 17 | 69 | 394 | 29 | 303 | 2.32e-62 | 206 |
| Msa1175120 | AT2G02170.1 | 30.141 | 355 | 196 | 17 | 61 | 394 | 98 | 421 | 2.83e-21 | 96.3 |
| Msa1175120 | AT2G02170.2 | 30.141 | 355 | 196 | 17 | 61 | 394 | 98 | 421 | 2.83e-21 | 96.3 |
| Msa1175120 | AT2G02170.5 | 30.141 | 355 | 196 | 17 | 61 | 394 | 98 | 421 | 2.83e-21 | 96.3 |
| Msa1175120 | AT2G02170.4 | 30.141 | 355 | 196 | 17 | 61 | 394 | 98 | 421 | 2.83e-21 | 96.3 |
| Msa1175120 | AT2G02170.3 | 31.212 | 330 | 177 | 16 | 95 | 403 | 1 | 301 | 7.45e-21 | 94.0 |
| Msa1175120 | AT2G02170.6 | 31.212 | 330 | 177 | 16 | 95 | 403 | 1 | 301 | 7.45e-21 | 94.0 |
Find 72 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTCTGCTTTAGCATTT+TGG | 0.143930 | 8_1:-6398661 | None:intergenic |
| TCTTCATCAACTTCTCTTCT+AGG | 0.148288 | 8_1:-6399843 | None:intergenic |
| AAGAACAAACACATGTTTAA+TGG | 0.195758 | 8_1:-6400032 | None:intergenic |
| TCTTCACTTGAGCTCCAATT+TGG | 0.237659 | 8_1:-6398108 | None:intergenic |
| TTAGAAGGAAAACTCTTTCT+TGG | 0.240297 | 8_1:-6396695 | None:intergenic |
| GGTTCTGAATACCTGAATTT+TGG | 0.242708 | 8_1:-6397772 | None:intergenic |
| CTAGGTTTGATCTCATCTTT+TGG | 0.242960 | 8_1:-6399825 | None:intergenic |
| TCAAAGTTCTTCTTCAAGTT+TGG | 0.247781 | 8_1:+6396922 | Msa1175120:CDS |
| ATGATTTGGTTGCACCAAAT+TGG | 0.272821 | 8_1:+6398094 | Msa1175120:CDS |
| GCTATACATGTTCATGCTTA+GGG | 0.279062 | 8_1:-6396417 | None:intergenic |
| TGCTATACATGTTCATGCTT+AGG | 0.299501 | 8_1:-6396418 | None:intergenic |
| GGTGTTTCATCTTCAGAATC+TGG | 0.311642 | 8_1:+6396794 | Msa1175120:CDS |
| TGGAACAACAAAGTATGATT+TGG | 0.316654 | 8_1:+6398080 | Msa1175120:CDS |
| TCATCTTCTTCTAGCATTGT+TGG | 0.324662 | 8_1:+6396662 | Msa1175120:CDS |
| CCAACAGACATAGTACTAAA+AGG | 0.331635 | 8_1:+6396989 | Msa1175120:CDS |
| TCAGCATCATCCCATTTAGA+AGG | 0.351555 | 8_1:-6396710 | None:intergenic |
| CTTCTCATCTTCTTCCCAAC+TGG | 0.358343 | 8_1:-6398202 | None:intergenic |
| GGAACAAGACAATGTGATAA+TGG | 0.370159 | 8_1:+6396815 | Msa1175120:CDS |
| TAATGGCTTTAAGCAGAAAA+TGG | 0.377630 | 8_1:+6396832 | Msa1175120:CDS |
| TCTGCATTGGTATTTGAAAC+TGG | 0.378820 | 8_1:-6396548 | None:intergenic |
| ACAACAACACTTAGAACAAA+TGG | 0.405886 | 8_1:+6399915 | Msa1175120:three_prime_UTR |
| AACAGTGTTGGAGCTTTCAA+TGG | 0.415019 | 8_1:+6396953 | Msa1175120:CDS |
| TTTGGAGGTTTATCCATGCT+TGG | 0.417920 | 8_1:-6398643 | None:intergenic |
| AGTGGTCTACCAGGTGTAGA+AGG | 0.428314 | 8_1:-6396623 | None:intergenic |
| CTCAAGTGAAGAGGAGGAAA+AGG | 0.432830 | 8_1:+6398119 | Msa1175120:CDS |
| TCAATGAAATCATCAACAAA+AGG | 0.436808 | 8_1:-6396473 | None:intergenic |
| TGCTAGTAGGTCAGGACCAT+TGG | 0.447997 | 8_1:+6397978 | Msa1175120:CDS |
| CATAATAACAACACTTTGAA+AGG | 0.458507 | 8_1:+6396773 | Msa1175120:CDS |
| ACCTACTAGCAGGAGTGTTA+TGG | 0.458860 | 8_1:-6397966 | None:intergenic |
| ACTACAATAGAATGCATTGC+CGG | 0.462123 | 8_1:+6399261 | Msa1175120:CDS |
| AAAGTGTTGTTATTATGAGC+AGG | 0.466876 | 8_1:-6396767 | None:intergenic |
| GGCAGCTATACAATCAGAAT+CGG | 0.470179 | 8_1:-6398181 | None:intergenic |
| TAGAAGAGAAGTTGATGAAG+AGG | 0.474993 | 8_1:+6399845 | Msa1175120:CDS |
| GTTTAATGGTTGTTATTGCA+AGG | 0.478802 | 8_1:-6400018 | None:intergenic |
| AAGGAAAACTCTTTCTTGGA+AGG | 0.487386 | 8_1:-6396691 | None:intergenic |
| AACACTCCTGCTAGTAGGTC+AGG | 0.488893 | 8_1:+6397970 | Msa1175120:CDS |
| TGATTGTATAGCTGCCAGTT+GGG | 0.489579 | 8_1:+6398188 | Msa1175120:CDS |
| ATGACACTCTTCTAGCTGAA+TGG | 0.512853 | 8_1:-6398040 | None:intergenic |
| CTATACATGTTCATGCTTAG+GGG | 0.518876 | 8_1:-6396416 | None:intergenic |
| TTTAATGGTTGTTATTGCAA+GGG | 0.519094 | 8_1:-6400017 | None:intergenic |
| TTCACAGGAAAGCTGAGGAT+TGG | 0.520048 | 8_1:+6399878 | Msa1175120:exon |
| AAGCTGAAAAGTGGTCTACC+AGG | 0.520352 | 8_1:-6396632 | None:intergenic |
| CTGATTGTATAGCTGCCAGT+TGG | 0.520802 | 8_1:+6398187 | Msa1175120:CDS |
| CAATGAAATCATCAACAAAA+GGG | 0.520852 | 8_1:-6396472 | None:intergenic |
| TATTCAGAACCAACAAAAGA+AGG | 0.526385 | 8_1:+6397784 | Msa1175120:CDS |
| ACAGTGTTGGAGCTTTCAAT+GGG | 0.526768 | 8_1:+6396954 | Msa1175120:CDS |
| TTTAGTACTATGTCTGTTGG+TGG | 0.529642 | 8_1:-6396986 | None:intergenic |
| GGCACAGAAATGACTCCGTT+AGG | 0.534539 | 8_1:+6397889 | Msa1175120:CDS |
| GAAGAACTGAAGCTGAAAAG+TGG | 0.537400 | 8_1:-6396641 | None:intergenic |
| AGAGGATGTCAATGGTTCAC+AGG | 0.541745 | 8_1:+6399863 | Msa1175120:CDS |
| CTTTAAGCAGAAAATGGATG+AGG | 0.543055 | 8_1:+6396838 | Msa1175120:CDS |
| GAGGTTAAACACAAAGATGT+TGG | 0.548887 | 8_1:+6397868 | Msa1175120:CDS |
| CTAGAAGCTCCTTCTACACC+TGG | 0.550547 | 8_1:+6396614 | Msa1175120:CDS |
| GCAGGCGATGAACTCTTGAA+TGG | 0.565189 | 8_1:-6397940 | None:intergenic |
| TTGGACCACAATAACAGTGT+TGG | 0.565677 | 8_1:+6396941 | Msa1175120:CDS |
| AAGCTCCAACACTGTTATTG+TGG | 0.569434 | 8_1:-6396946 | None:intergenic |
| GCAGGAGTGTTATGGCGCGC+AGG | 0.574536 | 8_1:-6397958 | None:intergenic |
| TACATGTTCATGCTTAGGGG+TGG | 0.575927 | 8_1:-6396413 | None:intergenic |
| GTTGATGAAGAGGATGTCAA+TGG | 0.576855 | 8_1:+6399855 | Msa1175120:CDS |
| AATGGTCCTGACCTACTAGC+AGG | 0.581765 | 8_1:-6397976 | None:intergenic |
| TTATGTAACATCGATAGCAA+TGG | 0.595110 | 8_1:+6398003 | Msa1175120:CDS |
| GCCATAACACTCCTGCTAGT+AGG | 0.598039 | 8_1:+6397965 | Msa1175120:CDS |
| TTTAAGCAGAAAATGGATGA+GGG | 0.600087 | 8_1:+6396839 | Msa1175120:CDS |
| AAAATGCTAAAGCAGAAGCC+AGG | 0.601345 | 8_1:+6398663 | Msa1175120:CDS |
| TTGGAGCTCAAGTGAAGAGG+AGG | 0.612723 | 8_1:+6398113 | Msa1175120:CDS |
| GAAGTTGTGGAACTTCCTAA+CGG | 0.623791 | 8_1:-6397904 | None:intergenic |
| TCGATGTTACATAATGCCAA+TGG | 0.625002 | 8_1:-6397994 | None:intergenic |
| AAATTGGAGCTCAAGTGAAG+AGG | 0.625563 | 8_1:+6398110 | Msa1175120:CDS |
| TTTAGGTTCAGCTTGCAAAG+TGG | 0.629888 | 8_1:-6396497 | None:intergenic |
| CGTGTGACATCTTGAAGTTG+TGG | 0.666558 | 8_1:-6397917 | None:intergenic |
| AATGGTTCACAGGAAAGCTG+AGG | 0.679326 | 8_1:+6399873 | Msa1175120:CDS |
| TTACACAGAAGTGATTCATG+AGG | 0.693684 | 8_1:+6397849 | Msa1175120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATAATTAATAAA+TGG | - | chr8_1:6399330-6399349 | None:intergenic | 0.0% |
| !! | AGAAATAATAATAAAAAGTT+TGG | - | chr8_1:6397081-6397100 | None:intergenic | 10.0% |
| !!! | AACATTTTATAGTATTATTA+AGG | - | chr8_1:6399663-6399682 | None:intergenic | 10.0% |
| !!! | AATTTTATTAATTCAACAAC+TGG | + | chr8_1:6397705-6397724 | Msa1175120:intron | 15.0% |
| !!! | TTTTAAAACATTGATTTGTA+AGG | - | chr8_1:6398254-6398273 | None:intergenic | 15.0% |
| !!! | GTTGAAAATATCTTTTAATT+AGG | - | chr8_1:6398528-6398547 | None:intergenic | 15.0% |
| !! | AAATTTATGAGAAATAGATT+TGG | - | chr8_1:6398715-6398734 | None:intergenic | 15.0% |
| !!! | AATCTATTTCTCATAAATTT+TGG | + | chr8_1:6398715-6398734 | Msa1175120:intron | 15.0% |
| !! | TAACAATAATAAACAAACTA+TGG | - | chr8_1:6398858-6398877 | None:intergenic | 15.0% |
| !! | TAAATACCAAACTTAAAATA+TGG | + | chr8_1:6399016-6399035 | Msa1175120:intron | 15.0% |
| !! | AAAAAAAAATAGAACAATAG+TGG | - | chr8_1:6399490-6399509 | None:intergenic | 15.0% |
| !!! | TTTTCATTAGTTAAAGAAAT+TGG | + | chr8_1:6399510-6399529 | Msa1175120:intron | 15.0% |
| !! | AGAATACAAGATAATAAACT+TGG | - | chr8_1:6397242-6397261 | None:intergenic | 20.0% |
| !!! | TCATTTTTGCAAATTATTAC+CGG | + | chr8_1:6397331-6397350 | Msa1175120:intron | 20.0% |
| !! | AACATAAGTGAAGAAAATAT+CGG | - | chr8_1:6398313-6398332 | None:intergenic | 20.0% |
| !!! | CAATGTTTTAAAAATCAAAC+CGG | - | chr8_1:6398405-6398424 | None:intergenic | 20.0% |
| !!! | ACATTATTGATATTTTCAAG+TGG | - | chr8_1:6398781-6398800 | None:intergenic | 20.0% |
| !! | TGTTAATGATAGTTTACTAA+TGG | + | chr8_1:6398873-6398892 | Msa1175120:intron | 20.0% |
| !! | TGTTAACTACTTAATTTAGA+GGG | - | chr8_1:6398973-6398992 | None:intergenic | 20.0% |
| !! | TTGTTAACTACTTAATTTAG+AGG | - | chr8_1:6398974-6398993 | None:intergenic | 20.0% |
| !!! | TTGATAATAGATTGTAATCT+AGG | + | chr8_1:6399538-6399557 | Msa1175120:intron | 20.0% |
| !! | TGATAATAGATTGTAATCTA+GGG | + | chr8_1:6399539-6399558 | Msa1175120:intron | 20.0% |
| !! | CATTATCATCATTATTCTTA+TGG | - | chr8_1:6399589-6399608 | None:intergenic | 20.0% |
| !!! | GTATTTTTTTAACACATTTG+TGG | - | chr8_1:6399711-6399730 | None:intergenic | 20.0% |
| !!! | TTGAACATTAAAAATTTGCT+TGG | - | chr8_1:6399750-6399769 | None:intergenic | 20.0% |
| !!! | AGCATGCTTTATTAATTTAT+AGG | + | chr8_1:6399795-6399814 | Msa1175120:intron | 20.0% |
| !! | AAGCTAAAAAGATTATTCAT+AGG | + | chr8_1:6399953-6399972 | Msa1175120:three_prime_UTR | 20.0% |
| ! | CAATGAAATCATCAACAAAA+GGG | - | chr8_1:6396475-6396494 | None:intergenic | 25.0% |
| ! | TCAATGAAATCATCAACAAA+AGG | - | chr8_1:6396476-6396495 | None:intergenic | 25.0% |
| !! | AAAGAGTTTTCCTTCTAAAT+GGG | + | chr8_1:6396700-6396719 | Msa1175120:CDS | 25.0% |
| ! | CATAATAACAACACTTTGAA+AGG | + | chr8_1:6396773-6396792 | Msa1175120:CDS | 25.0% |
| ! | GTTAAAACCTTGTCATTAAA+TGG | - | chr8_1:6397636-6397655 | None:intergenic | 25.0% |
| !!! | TACCTGAATTTTGGTAAAAT+CGG | - | chr8_1:6397766-6397785 | None:intergenic | 25.0% |
| !! | AATAAGAATCCTTCTTTTGT+TGG | - | chr8_1:6397796-6397815 | None:intergenic | 25.0% |
| ! | ATTTAATCGTAAAGTTCAAC+CGG | + | chr8_1:6398275-6398294 | Msa1175120:intron | 25.0% |
| !!! | CTTCACTTATGTTATTTTAG+CGG | + | chr8_1:6398320-6398339 | Msa1175120:intron | 25.0% |
| !!! | AAATTTTGGTTAGTTTGCAA+TGG | + | chr8_1:6398729-6398748 | Msa1175120:intron | 25.0% |
| !!! | TGATATTTTCAAGTGGAATT+TGG | - | chr8_1:6398774-6398793 | None:intergenic | 25.0% |
| ! | TTCAATATGTACACTGTATA+TGG | - | chr8_1:6399201-6399220 | None:intergenic | 25.0% |
| ! | TATTGCATGAAATCAGTATA+GGG | - | chr8_1:6399408-6399427 | None:intergenic | 25.0% |
| ! | ATATTGCATGAAATCAGTAT+AGG | - | chr8_1:6399409-6399428 | None:intergenic | 25.0% |
| !! | TTTAATGGTTGTTATTGCAA+GGG | - | chr8_1:6400020-6400039 | None:intergenic | 25.0% |
| ! | AAGAACAAACACATGTTTAA+TGG | - | chr8_1:6400035-6400054 | None:intergenic | 25.0% |
| GAACATGTATAGCAAAAACA+AGG | + | chr8_1:6396427-6396446 | Msa1175120:CDS | 30.0% | |
| ! | CAAACTCAGATGTTTCTTTT+AGG | - | chr8_1:6396517-6396536 | None:intergenic | 30.0% |
| TTAGAAGGAAAACTCTTTCT+TGG | - | chr8_1:6396698-6396717 | None:intergenic | 30.0% | |
| ! | GAAAGAGTTTTCCTTCTAAA+TGG | + | chr8_1:6396699-6396718 | Msa1175120:CDS | 30.0% |
| !! | AAAGTGTTGTTATTATGAGC+AGG | - | chr8_1:6396770-6396789 | None:intergenic | 30.0% |
| !! | TAATGGCTTTAAGCAGAAAA+TGG | + | chr8_1:6396832-6396851 | Msa1175120:CDS | 30.0% |
| TTTAAGCAGAAAATGGATGA+GGG | + | chr8_1:6396839-6396858 | Msa1175120:CDS | 30.0% | |
| ! | TCAAAGTTCTTCTTCAAGTT+TGG | + | chr8_1:6396922-6396941 | Msa1175120:CDS | 30.0% |
| ! | TTTTGCAAATTATTACCGGT+AGG | + | chr8_1:6397335-6397354 | Msa1175120:intron | 30.0% |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr8_1:6397387-6397406 | Msa1175120:intron | 30.0% | |
| ATAGAAAGAGGAAGTTTCAT+GGG | - | chr8_1:6397609-6397628 | None:intergenic | 30.0% | |
| AATAGAAAGAGGAAGTTTCA+TGG | - | chr8_1:6397610-6397629 | None:intergenic | 30.0% | |
| TGAAACTTCCTCTTTCTATT+TGG | + | chr8_1:6397610-6397629 | Msa1175120:intron | 30.0% | |
| TTAAATGGCCAAATAGAAAG+AGG | - | chr8_1:6397621-6397640 | None:intergenic | 30.0% | |
| TATTTGGCCATTTAATGACA+AGG | + | chr8_1:6397626-6397645 | Msa1175120:intron | 30.0% | |
| TATTCAGAACCAACAAAAGA+AGG | + | chr8_1:6397784-6397803 | Msa1175120:CDS | 30.0% | |
| TTATGTAACATCGATAGCAA+TGG | + | chr8_1:6398003-6398022 | Msa1175120:CDS | 30.0% | |
| ! | CATTTTTCTAAGCTGCAATT+TGG | + | chr8_1:6398060-6398079 | Msa1175120:CDS | 30.0% |
| TGGAACAACAAAGTATGATT+TGG | + | chr8_1:6398080-6398099 | Msa1175120:CDS | 30.0% | |
| TATCAGTTCATTGACGAAAA+TGG | - | chr8_1:6398452-6398471 | None:intergenic | 30.0% | |
| ! | TGCATTCATCTTATTTGCAT+TGG | + | chr8_1:6398564-6398583 | Msa1175120:intron | 30.0% |
| ATTGTGATTTGAATTGATGC+AGG | + | chr8_1:6398597-6398616 | Msa1175120:intron | 30.0% | |
| !!! | TATTTTCAAGTGGAATTTGG+TGG | - | chr8_1:6398771-6398790 | None:intergenic | 30.0% |
| AACTACTTAATTTAGAGGGT+GGG | - | chr8_1:6398969-6398988 | None:intergenic | 30.0% | |
| TAACTACTTAATTTAGAGGG+TGG | - | chr8_1:6398970-6398989 | None:intergenic | 30.0% | |
| !!! | GACGATCCATATTTTAAGTT+TGG | - | chr8_1:6399025-6399044 | None:intergenic | 30.0% |
| AGATTTATGTGTAATGCACA+TGG | + | chr8_1:6399134-6399153 | Msa1175120:intron | 30.0% | |
| GATTTATGTGTAATGCACAT+GGG | + | chr8_1:6399135-6399154 | Msa1175120:intron | 30.0% | |
| AAATGGTATCCATGAATTGA+GGG | - | chr8_1:6399313-6399332 | None:intergenic | 30.0% | |
| TAAATGGTATCCATGAATTG+AGG | - | chr8_1:6399314-6399333 | None:intergenic | 30.0% | |
| ! | AATCCAAGTTGAAAACTACT+AGG | + | chr8_1:6399622-6399641 | Msa1175120:intron | 30.0% |
| ! | TGTGGTTTTCAATGATTTTG+TGG | - | chr8_1:6399693-6399712 | None:intergenic | 30.0% |
| ACAACAACACTTAGAACAAA+TGG | + | chr8_1:6399915-6399934 | Msa1175120:three_prime_UTR | 30.0% | |
| ! | GTTTAATGGTTGTTATTGCA+AGG | - | chr8_1:6400021-6400040 | None:intergenic | 30.0% |
| CTATACATGTTCATGCTTAG+GGG | - | chr8_1:6396419-6396438 | None:intergenic | 35.0% | |
| GCTATACATGTTCATGCTTA+GGG | - | chr8_1:6396420-6396439 | None:intergenic | 35.0% | |
| TGCTATACATGTTCATGCTT+AGG | - | chr8_1:6396421-6396440 | None:intergenic | 35.0% | |
| ! | TCTGCATTGGTATTTGAAAC+TGG | - | chr8_1:6396551-6396570 | None:intergenic | 35.0% |
| TCATCTTCTTCTAGCATTGT+TGG | + | chr8_1:6396662-6396681 | Msa1175120:CDS | 35.0% | |
| AAGGAAAACTCTTTCTTGGA+AGG | - | chr8_1:6396694-6396713 | None:intergenic | 35.0% | |
| AATGGGATGATGCTGAAAAA+TGG | + | chr8_1:6396717-6396736 | Msa1175120:CDS | 35.0% | |
| GGAACAAGACAATGTGATAA+TGG | + | chr8_1:6396815-6396834 | Msa1175120:CDS | 35.0% | |
| CTTTAAGCAGAAAATGGATG+AGG | + | chr8_1:6396838-6396857 | Msa1175120:CDS | 35.0% | |
| !! | AGGGTTTTTCAGAGAAATCA+AGG | + | chr8_1:6396858-6396877 | Msa1175120:CDS | 35.0% |
| !! | GGGTTTTTCAGAGAAATCAA+GGG | + | chr8_1:6396859-6396878 | Msa1175120:CDS | 35.0% |
| TTTAGTACTATGTCTGTTGG+TGG | - | chr8_1:6396989-6397008 | None:intergenic | 35.0% | |
| ! | CCTTTTAGTACTATGTCTGT+TGG | - | chr8_1:6396992-6397011 | None:intergenic | 35.0% |
| CCAACAGACATAGTACTAAA+AGG | + | chr8_1:6396989-6397008 | Msa1175120:CDS | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr8_1:6397390-6397409 | Msa1175120:intron | 35.0% | |
| CTAACTCAACCTTACAAAAC+CGG | - | chr8_1:6397434-6397453 | None:intergenic | 35.0% | |
| GTTGGTATCATTGTTAGTGT+CGG | + | chr8_1:6397481-6397500 | Msa1175120:intron | 35.0% | |
| TTGGTATCATTGTTAGTGTC+GGG | + | chr8_1:6397482-6397501 | Msa1175120:intron | 35.0% | |
| CATTGATCATTGTTAGTGTC+TGG | + | chr8_1:6397577-6397596 | Msa1175120:intron | 35.0% | |
| !! | AGCCGATTTTACCAAAATTC+AGG | + | chr8_1:6397761-6397780 | Msa1175120:CDS | 35.0% |
| !!! | GGTTCTGAATACCTGAATTT+TGG | - | chr8_1:6397775-6397794 | None:intergenic | 35.0% |
| TTACACAGAAGTGATTCATG+AGG | + | chr8_1:6397849-6397868 | Msa1175120:CDS | 35.0% | |
| GAGGTTAAACACAAAGATGT+TGG | + | chr8_1:6397868-6397887 | Msa1175120:CDS | 35.0% | |
| TCGATGTTACATAATGCCAA+TGG | - | chr8_1:6397997-6398016 | None:intergenic | 35.0% | |
| !! | ATGATTTGGTTGCACCAAAT+TGG | + | chr8_1:6398094-6398113 | Msa1175120:CDS | 35.0% |
| TTAAAAATCAAACCGGCATC+AGG | - | chr8_1:6398398-6398417 | None:intergenic | 35.0% | |
| !! | TCATCTTATTTGCATTGGCT+AGG | + | chr8_1:6398569-6398588 | Msa1175120:intron | 35.0% |
| AAGAAGCAAAAATCCAAGCA+TGG | + | chr8_1:6398630-6398649 | Msa1175120:CDS | 35.0% | |
| ATCATTACATCGAAAACCGT+TGG | - | chr8_1:6399058-6399077 | None:intergenic | 35.0% | |
| ! | AACGGTTTTCGATGTAATGA+TGG | + | chr8_1:6399057-6399076 | Msa1175120:intron | 35.0% |
| CCTTGGATTCTACATACTTT+AGG | - | chr8_1:6399178-6399197 | None:intergenic | 35.0% | |
| CCTAAAGTATGTAGAATCCA+AGG | + | chr8_1:6399175-6399194 | Msa1175120:intron | 35.0% | |
| ACTACAATAGAATGCATTGC+CGG | + | chr8_1:6399261-6399280 | Msa1175120:CDS | 35.0% | |
| !! | TGGACTAGTATTGTATTGAC+TGG | - | chr8_1:6399359-6399378 | None:intergenic | 35.0% |
| ! | ATGCCTAGTAGTTTTCAACT+TGG | - | chr8_1:6399628-6399647 | None:intergenic | 35.0% |
| ! | CTAGGTTTGATCTCATCTTT+TGG | - | chr8_1:6399828-6399847 | None:intergenic | 35.0% |
| TCTTCATCAACTTCTCTTCT+AGG | - | chr8_1:6399846-6399865 | None:intergenic | 35.0% | |
| !! | TAGAAGAGAAGTTGATGAAG+AGG | + | chr8_1:6399845-6399864 | Msa1175120:CDS | 35.0% |
| ! | GGCATAACTCACAATTTTCT+AGG | + | chr8_1:6399974-6399993 | Msa1175120:three_prime_UTR | 35.0% |
| ! | TTTAGGTTCAGCTTGCAAAG+TGG | - | chr8_1:6396500-6396519 | None:intergenic | 40.0% |
| ! | GAGTCTTCTGTTTTCTGCAT+TGG | - | chr8_1:6396564-6396583 | None:intergenic | 40.0% |
| GAAGAACTGAAGCTGAAAAG+TGG | - | chr8_1:6396644-6396663 | None:intergenic | 40.0% | |
| TCAGCATCATCCCATTTAGA+AGG | - | chr8_1:6396713-6396732 | None:intergenic | 40.0% | |
| GGTGTTTCATCTTCAGAATC+TGG | + | chr8_1:6396794-6396813 | Msa1175120:CDS | 40.0% | |
| TTGGACCACAATAACAGTGT+TGG | + | chr8_1:6396941-6396960 | Msa1175120:CDS | 40.0% | |
| AAGCTCCAACACTGTTATTG+TGG | - | chr8_1:6396949-6396968 | None:intergenic | 40.0% | |
| ! | AACAGTGTTGGAGCTTTCAA+TGG | + | chr8_1:6396953-6396972 | Msa1175120:CDS | 40.0% |
| ! | ACAGTGTTGGAGCTTTCAAT+GGG | + | chr8_1:6396954-6396973 | Msa1175120:CDS | 40.0% |
| CACTCTTAGGTCAAGTCAAT+GGG | - | chr8_1:6397192-6397211 | None:intergenic | 40.0% | |
| ACACTCTTAGGTCAAGTCAA+TGG | - | chr8_1:6397193-6397212 | None:intergenic | 40.0% | |
| ! | TTGACTTGACCTAAGAGTGT+AGG | + | chr8_1:6397193-6397212 | Msa1175120:intron | 40.0% |
| TTCAACCAACCTACACTCTT+AGG | - | chr8_1:6397205-6397224 | None:intergenic | 40.0% | |
| GAGTCATGTAGCACTTATAC+TGG | + | chr8_1:6397262-6397281 | Msa1175120:intron | 40.0% | |
| TGTGACAACCGTAAACATGT+TGG | - | chr8_1:6397300-6397319 | None:intergenic | 40.0% | |
| GATATGGGACTAAATCCTAC+CGG | - | chr8_1:6397353-6397372 | None:intergenic | 40.0% | |
| GGTAGGATTTAGTCCCATAT+CGG | + | chr8_1:6397352-6397371 | Msa1175120:intron | 40.0% | |
| GATTTAGTCCCATATCGGAT+AGG | + | chr8_1:6397357-6397376 | Msa1175120:intron | 40.0% | |
| GAATCCTACCTATCCGATAT+GGG | - | chr8_1:6397368-6397387 | None:intergenic | 40.0% | |
| AGAATCCTACCTATCCGATA+TGG | - | chr8_1:6397369-6397388 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGTTGAGTT+AGG | + | chr8_1:6397432-6397451 | Msa1175120:intron | 40.0% |
| GAAGTTGTGGAACTTCCTAA+CGG | - | chr8_1:6397907-6397926 | None:intergenic | 40.0% | |
| ! | ATGACACTCTTCTAGCTGAA+TGG | - | chr8_1:6398043-6398062 | None:intergenic | 40.0% |
| TCTTCACTTGAGCTCCAATT+TGG | - | chr8_1:6398111-6398130 | None:intergenic | 40.0% | |
| AAATTGGAGCTCAAGTGAAG+AGG | + | chr8_1:6398110-6398129 | Msa1175120:CDS | 40.0% | |
| GGCAGCTATACAATCAGAAT+CGG | - | chr8_1:6398184-6398203 | None:intergenic | 40.0% | |
| TGATTGTATAGCTGCCAGTT+GGG | + | chr8_1:6398188-6398207 | Msa1175120:CDS | 40.0% | |
| ! | AGAAGAACAAGTGCTGTCTT+AGG | + | chr8_1:6398220-6398239 | Msa1175120:intron | 40.0% |
| !! | ATATCGGTTCATCGTTCAAC+CGG | - | chr8_1:6398297-6398316 | None:intergenic | 40.0% |
| GACGAAAATGGTCATCTTAG+CGG | - | chr8_1:6398440-6398459 | None:intergenic | 40.0% | |
| CTGAAGTAGTAGAGAAGGTA+AGG | - | chr8_1:6398475-6398494 | None:intergenic | 40.0% | |
| GAAAGCTGAAGTAGTAGAGA+AGG | - | chr8_1:6398480-6398499 | None:intergenic | 40.0% | |
| TTTGGAGGTTTATCCATGCT+TGG | - | chr8_1:6398646-6398665 | None:intergenic | 40.0% | |
| ! | CTTCTGCTTTAGCATTTTGG+AGG | - | chr8_1:6398661-6398680 | None:intergenic | 40.0% |
| ! | TGGCTTCTGCTTTAGCATTT+TGG | - | chr8_1:6398664-6398683 | None:intergenic | 40.0% |
| AAAATGCTAAAGCAGAAGCC+AGG | + | chr8_1:6398663-6398682 | Msa1175120:CDS | 40.0% | |
| !!! | TACCTCAAGCTTTTTTGACC+TGG | - | chr8_1:6398684-6398703 | None:intergenic | 40.0% |
| ! | TCAAGTGGAATTTGGTGGAT+AGG | - | chr8_1:6398766-6398785 | None:intergenic | 40.0% |
| ! | AGGGTTAGTAATGTGGTCAA+AGG | - | chr8_1:6398931-6398950 | None:intergenic | 40.0% |
| TTAATTTAGAGGGTGGGTGA+GGG | - | chr8_1:6398963-6398982 | None:intergenic | 40.0% | |
| AAGCAGCTTGAACTGTTTGT+AGG | + | chr8_1:6399107-6399126 | Msa1175120:intron | 40.0% | |
| TATGTGTAATGCACATGGGA+TGG | + | chr8_1:6399139-6399158 | Msa1175120:intron | 40.0% | |
| ATGTGTAATGCACATGGGAT+GGG | + | chr8_1:6399140-6399159 | Msa1175120:intron | 40.0% | |
| ATGTACACTGTATATGGCCT+TGG | - | chr8_1:6399195-6399214 | None:intergenic | 40.0% | |
| AGGAAATAAGCCAGCAATAC+CGG | - | chr8_1:6399283-6399302 | None:intergenic | 40.0% | |
| ! | GTTGATGAAGAGGATGTCAA+TGG | + | chr8_1:6399855-6399874 | Msa1175120:CDS | 40.0% |
| ! | TTTTCTAGGCACAGTTCATG+TGG | + | chr8_1:6399988-6400007 | Msa1175120:three_prime_UTR | 40.0% |
| TACATGTTCATGCTTAGGGG+TGG | - | chr8_1:6396416-6396435 | None:intergenic | 45.0% | |
| AAGCTGAAAAGTGGTCTACC+AGG | - | chr8_1:6396635-6396654 | None:intergenic | 45.0% | |
| ! | CTTGACCTAAGAGTGTAGGT+TGG | + | chr8_1:6397197-6397216 | Msa1175120:intron | 45.0% |
| TCCGGTGTCCAACATGTTTA+CGG | + | chr8_1:6397289-6397308 | Msa1175120:intron | 45.0% | |
| ACCGTAAACATGTTGGACAC+CGG | - | chr8_1:6397293-6397312 | None:intergenic | 45.0% | |
| TAGTCCCATATCGGATAGGT+AGG | + | chr8_1:6397361-6397380 | Msa1175120:intron | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | chr8_1:6397425-6397444 | None:intergenic | 45.0% |
| ACTGACACGATTGATGTCAC+GGG | - | chr8_1:6397459-6397478 | None:intergenic | 45.0% | |
| CACTGACACGATTGATGTCA+CGG | - | chr8_1:6397460-6397479 | None:intergenic | 45.0% | |
| CATCAATCGTGTCAGTGTGT+TGG | + | chr8_1:6397463-6397482 | Msa1175120:intron | 45.0% | |
| CGTGTGACATCTTGAAGTTG+TGG | - | chr8_1:6397920-6397939 | None:intergenic | 45.0% | |
| !! | ACCTACTAGCAGGAGTGTTA+TGG | - | chr8_1:6397969-6397988 | None:intergenic | 45.0% |
| CTCAAGTGAAGAGGAGGAAA+AGG | + | chr8_1:6398119-6398138 | Msa1175120:CDS | 45.0% | |
| CTGATTGTATAGCTGCCAGT+TGG | + | chr8_1:6398187-6398206 | Msa1175120:CDS | 45.0% | |
| CTTCTCATCTTCTTCCCAAC+TGG | - | chr8_1:6398205-6398224 | None:intergenic | 45.0% | |
| AGCCAGGTCAAAAAAGCTTG+AGG | + | chr8_1:6398679-6398698 | Msa1175120:CDS | 45.0% | |
| ! | GAGGTTGAGGGTTAGTAATG+TGG | - | chr8_1:6398938-6398957 | None:intergenic | 45.0% |
| CTTAATTTAGAGGGTGGGTG+AGG | - | chr8_1:6398964-6398983 | None:intergenic | 45.0% | |
| GAAAACCGTTGGATCACGAT+CGG | - | chr8_1:6399047-6399066 | None:intergenic | 45.0% | |
| CAGCTTGAACTGTTTGTAGG+TGG | + | chr8_1:6399110-6399129 | Msa1175120:intron | 45.0% | |
| TGGTATCCATGAATTGAGGG+TGG | - | chr8_1:6399310-6399329 | None:intergenic | 45.0% | |
| CTAGTCCACTTCTGTGTTTG+AGG | + | chr8_1:6399371-6399390 | Msa1175120:intron | 45.0% | |
| GTGATCCTCAAACACAGAAG+TGG | - | chr8_1:6399379-6399398 | None:intergenic | 45.0% | |
| AGAGGATGTCAATGGTTCAC+AGG | + | chr8_1:6399863-6399882 | Msa1175120:CDS | 45.0% | |
| AATGGTTCACAGGAAAGCTG+AGG | + | chr8_1:6399873-6399892 | Msa1175120:CDS | 45.0% | |
| TTCACAGGAAAGCTGAGGAT+TGG | + | chr8_1:6399878-6399897 | Msa1175120:exon | 45.0% | |
| CTAGAAGCTCCTTCTACACC+TGG | + | chr8_1:6396614-6396633 | Msa1175120:CDS | 50.0% | |
| AGTGGTCTACCAGGTGTAGA+AGG | - | chr8_1:6396626-6396645 | None:intergenic | 50.0% | |
| AGCACTTATACTGGCGTGTC+CGG | + | chr8_1:6397271-6397290 | Msa1175120:intron | 50.0% | |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | chr8_1:6397422-6397441 | Msa1175120:intron | 50.0% |
| CTGACACGATTGATGTCACG+GGG | - | chr8_1:6397458-6397477 | None:intergenic | 50.0% | |
| GGCACAGAAATGACTCCGTT+AGG | + | chr8_1:6397889-6397908 | Msa1175120:CDS | 50.0% | |
| GCAGGCGATGAACTCTTGAA+TGG | - | chr8_1:6397943-6397962 | None:intergenic | 50.0% | |
| GCCATAACACTCCTGCTAGT+AGG | + | chr8_1:6397965-6397984 | Msa1175120:CDS | 50.0% | |
| AACACTCCTGCTAGTAGGTC+AGG | + | chr8_1:6397970-6397989 | Msa1175120:CDS | 50.0% | |
| AATGGTCCTGACCTACTAGC+AGG | - | chr8_1:6397979-6397998 | None:intergenic | 50.0% | |
| TGCTAGTAGGTCAGGACCAT+TGG | + | chr8_1:6397978-6397997 | Msa1175120:CDS | 50.0% | |
| TTGGAGCTCAAGTGAAGAGG+AGG | + | chr8_1:6398113-6398132 | Msa1175120:CDS | 50.0% | |
| GTTGAACCTTGACCTGATGC+CGG | + | chr8_1:6398383-6398402 | Msa1175120:intron | 50.0% | |
| ATCAAACCGGCATCAGGTCA+AGG | - | chr8_1:6398392-6398411 | None:intergenic | 50.0% | |
| ATCGTCCGATCGTGATCCAA+CGG | + | chr8_1:6399039-6399058 | Msa1175120:intron | 50.0% | |
| GAATGCATTGCCGGTATTGC+TGG | + | chr8_1:6399270-6399289 | Msa1175120:intron | 50.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | chr8_1:6397420-6397439 | None:intergenic | 55.0% |
| TGGGTGAGGGTAGAGGTTGA+GGG | - | chr8_1:6398950-6398969 | None:intergenic | 55.0% | |
| CATGAATTGAGGGTGGCTCG+AGG | - | chr8_1:6399303-6399322 | None:intergenic | 55.0% | |
| CTCGAGCCACCCTCAATTCA+TGG | + | chr8_1:6399301-6399320 | Msa1175120:intron | 55.0% | |
| GCACTCCTCACCGTACAAGC+CGG | + | chr8_1:6397412-6397431 | Msa1175120:intron | 60.0% | |
| GTGGGTGAGGGTAGAGGTTG+AGG | - | chr8_1:6398951-6398970 | None:intergenic | 60.0% | |
| TAGAGGGTGGGTGAGGGTAG+AGG | - | chr8_1:6398957-6398976 | None:intergenic | 60.0% | |
| !! | GCAGGAGTGTTATGGCGCGC+AGG | - | chr8_1:6397961-6397980 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 6396410 | 6400081 | 6396410 | ID=Msa1175120;Name=Msa1175120 |
| chr8_1 | mRNA | 6396410 | 6400081 | 6396410 | ID=Msa1175120-mRNA-1;Parent=Msa1175120;Name=Msa1175120-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.25|0.4|0.8|1|1|5|188|427 |
| chr8_1 | exon | 6396410 | 6397010 | 6396410 | ID=Msa1175120-mRNA-1:exon:2265;Parent=Msa1175120-mRNA-1 |
| chr8_1 | exon | 6397740 | 6398229 | 6397740 | ID=Msa1175120-mRNA-1:exon:2266;Parent=Msa1175120-mRNA-1 |
| chr8_1 | exon | 6398619 | 6398700 | 6398619 | ID=Msa1175120-mRNA-1:exon:2267;Parent=Msa1175120-mRNA-1 |
| chr8_1 | exon | 6399249 | 6399282 | 6399249 | ID=Msa1175120-mRNA-1:exon:2268;Parent=Msa1175120-mRNA-1 |
| chr8_1 | exon | 6399817 | 6400081 | 6399817 | ID=Msa1175120-mRNA-1:exon:2269;Parent=Msa1175120-mRNA-1 |
| chr8_1 | CDS | 6396410 | 6397010 | 6396410 | ID=Msa1175120-mRNA-1:cds;Parent=Msa1175120-mRNA-1 |
| chr8_1 | CDS | 6397740 | 6398229 | 6397740 | ID=Msa1175120-mRNA-1:cds;Parent=Msa1175120-mRNA-1 |
| chr8_1 | CDS | 6398619 | 6398700 | 6398619 | ID=Msa1175120-mRNA-1:cds;Parent=Msa1175120-mRNA-1 |
| chr8_1 | CDS | 6399249 | 6399282 | 6399249 | ID=Msa1175120-mRNA-1:cds;Parent=Msa1175120-mRNA-1 |
| chr8_1 | CDS | 6399817 | 6399893 | 6399817 | ID=Msa1175120-mRNA-1:cds;Parent=Msa1175120-mRNA-1 |
| chr8_1 | three_prime_UTR | 6399894 | 6400081 | 6399894 | ID=Msa1175120-mRNA-1:three_prime_utr;Parent=Msa1175120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
