Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903340 | XP_013450870.1 | 91.129 | 248 | 6 | 1 | 1 | 232 | 1 | 248 | 1.14e-144 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903340 | sp|Q9LFR3|GASAE_ARATH | 66.154 | 65 | 22 | 0 | 168 | 232 | 211 | 275 | 5.21e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001800 | Msa0903340 | 0.812431 | 4.255359e-51 | -8.615850e-47 |
| Msa0044160 | Msa0903340 | 0.806801 | 6.894701e-50 | -8.615850e-47 |
| Msa0044530 | Msa0903340 | -0.807045 | 6.123610e-50 | -8.615850e-47 |
| Msa0044780 | Msa0903340 | -0.809733 | 1.635623e-50 | -8.615850e-47 |
| Msa0063190 | Msa0903340 | 0.813077 | 3.071390e-51 | -8.615850e-47 |
| Msa0079880 | Msa0903340 | 0.804292 | 2.316999e-49 | -8.615850e-47 |
| Msa0108630 | Msa0903340 | 0.821560 | 3.782973e-53 | -8.615850e-47 |
| Msa0617940 | Msa0903340 | 0.816874 | 4.415172e-52 | -8.615850e-47 |
| Msa0630440 | Msa0903340 | 0.838088 | 3.539630e-57 | -8.615850e-47 |
| Msa0689830 | Msa0903340 | 0.847606 | 1.039636e-59 | -8.615850e-47 |
| Msa0704690 | Msa0903340 | 0.811007 | 8.682080e-51 | -8.615850e-47 |
| Msa0707260 | Msa0903340 | 0.807243 | 5.559491e-50 | -8.615850e-47 |
| Msa0719270 | Msa0903340 | 0.813166 | 2.937674e-51 | -8.615850e-47 |
| Msa0726170 | Msa0903340 | -0.812669 | 3.774670e-51 | -8.615850e-47 |
| Msa0731780 | Msa0903340 | 0.855514 | 5.994445e-62 | -8.615850e-47 |
| Msa0745140 | Msa0903340 | 0.807048 | 6.114415e-50 | -8.615850e-47 |
| Msa0746650 | Msa0903340 | 0.818141 | 2.288239e-52 | -8.615850e-47 |
| Msa0772220 | Msa0903340 | 0.845535 | 3.822200e-59 | -8.615850e-47 |
| Msa0774060 | Msa0903340 | 0.825260 | 5.164778e-54 | -8.615850e-47 |
| Msa0776640 | Msa0903340 | 0.807429 | 5.077602e-50 | -8.615850e-47 |
| Msa0807870 | Msa0903340 | -0.809347 | 1.979401e-50 | -8.615850e-47 |
| Msa0825920 | Msa0903340 | 0.809026 | 2.318718e-50 | -8.615850e-47 |
| Msa0837680 | Msa0903340 | 0.805852 | 1.092649e-49 | -8.615850e-47 |
| Msa0840520 | Msa0903340 | 0.824625 | 7.293815e-54 | -8.615850e-47 |
| Msa0125590 | Msa0903340 | 0.800878 | 1.171933e-48 | -8.615850e-47 |
| Msa0165640 | Msa0903340 | 0.819255 | 1.278730e-52 | -8.615850e-47 |
| Msa0168380 | Msa0903340 | 0.802241 | 6.160327e-49 | -8.615850e-47 |
| Msa0173250 | Msa0903340 | 0.817107 | 3.913945e-52 | -8.615850e-47 |
| Msa0183710 | Msa0903340 | 0.804065 | 2.582639e-49 | -8.615850e-47 |
| Msa0184500 | Msa0903340 | 0.819984 | 8.714931e-53 | -8.615850e-47 |
| Msa0195230 | Msa0903340 | 0.804229 | 2.388162e-49 | -8.615850e-47 |
| Msa0195260 | Msa0903340 | 0.803360 | 3.617361e-49 | -8.615850e-47 |
| Msa0203080 | Msa0903340 | 0.841081 | 5.897636e-58 | -8.615850e-47 |
| Msa0206370 | Msa0903340 | 0.815843 | 7.511364e-52 | -8.615850e-47 |
| Msa0211460 | Msa0903340 | 0.806892 | 6.596706e-50 | -8.615850e-47 |
| Msa0388210 | Msa0903340 | 0.801600 | 8.339945e-49 | -8.615850e-47 |
| Msa0401060 | Msa0903340 | 0.816135 | 6.464253e-52 | -8.615850e-47 |
| Msa0402770 | Msa0903340 | 0.808434 | 3.103391e-50 | -8.615850e-47 |
| Msa0418100 | Msa0903340 | 0.801003 | 1.105124e-48 | -8.615850e-47 |
| Msa0433630 | Msa0903340 | 0.824409 | 8.200479e-54 | -8.615850e-47 |
| Msa0437520 | Msa0903340 | 0.809238 | 2.089016e-50 | -8.615850e-47 |
| Msa0447870 | Msa0903340 | 0.837284 | 5.691903e-57 | -8.615850e-47 |
| Msa0450330 | Msa0903340 | -0.824711 | 6.960696e-54 | -8.615850e-47 |
| Msa0240540 | Msa0903340 | 0.819105 | 1.383295e-52 | -8.615850e-47 |
| Msa0240590 | Msa0903340 | -0.815423 | 9.317672e-52 | -8.615850e-47 |
| Msa0246210 | Msa0903340 | 0.827383 | 1.612318e-54 | -8.615850e-47 |
| Msa0267450 | Msa0903340 | -0.802080 | 6.646499e-49 | -8.615850e-47 |
| Msa0267510 | Msa0903340 | -0.804180 | 2.444782e-49 | -8.615850e-47 |
| Msa0276850 | Msa0903340 | 0.837650 | 4.586755e-57 | -8.615850e-47 |
| Msa0276860 | Msa0903340 | 0.849592 | 2.929747e-60 | -8.615850e-47 |
| Msa0279000 | Msa0903340 | 0.804234 | 2.381728e-49 | -8.615850e-47 |
| Msa0279090 | Msa0903340 | -0.809848 | 1.544863e-50 | -8.615850e-47 |
| Msa0284800 | Msa0903340 | 0.824882 | 6.344843e-54 | -8.615850e-47 |
| Msa0307430 | Msa0903340 | 0.809536 | 1.802253e-50 | -8.615850e-47 |
| Msa0312740 | Msa0903340 | 0.810805 | 9.604036e-51 | -8.615850e-47 |
| Msa0326170 | Msa0903340 | -0.801066 | 1.073145e-48 | -8.615850e-47 |
| Msa0328870 | Msa0903340 | 0.806221 | 9.139516e-50 | -8.615850e-47 |
| Msa0330520 | Msa0903340 | 0.803376 | 3.589782e-49 | -8.615850e-47 |
| Msa0354840 | Msa0903340 | 0.816400 | 5.638144e-52 | -8.615850e-47 |
| Msa0490430 | Msa0903340 | 0.807977 | 3.883560e-50 | -8.615850e-47 |
| Msa0521510 | Msa0903340 | 0.816693 | 4.848905e-52 | -8.615850e-47 |
| Msa0521530 | Msa0903340 | 0.814481 | 1.506917e-51 | -8.615850e-47 |
| Msa0533990 | Msa0903340 | 0.806188 | 9.287411e-50 | -8.615850e-47 |
| Msa0549870 | Msa0903340 | 0.803837 | 2.881518e-49 | -8.615850e-47 |
| Msa0553750 | Msa0903340 | 0.820838 | 5.550619e-53 | -8.615850e-47 |
| Msa0567330 | Msa0903340 | 0.804545 | 2.051657e-49 | -8.615850e-47 |
| Msa0567610 | Msa0903340 | 0.816897 | 4.363126e-52 | -8.615850e-47 |
| Msa0574900 | Msa0903340 | 0.822056 | 2.904585e-53 | -8.615850e-47 |
| Msa0576320 | Msa0903340 | 0.809854 | 1.540522e-50 | -8.615850e-47 |
| Msa0590000 | Msa0903340 | 0.815539 | 8.780104e-52 | -8.615850e-47 |
| Msa0601380 | Msa0903340 | 0.803033 | 4.228797e-49 | -8.615850e-47 |
| Msa0850600 | Msa0903340 | 0.814210 | 1.730574e-51 | -8.615850e-47 |
| Msa0861440 | Msa0903340 | 0.836543 | 8.800735e-57 | -8.615850e-47 |
| Msa0865420 | Msa0903340 | 0.803769 | 2.976687e-49 | -8.615850e-47 |
| Msa0866530 | Msa0903340 | 0.801348 | 9.394593e-49 | -8.615850e-47 |
| Msa0870020 | Msa0903340 | 0.892340 | 1.736750e-74 | -8.615850e-47 |
| Msa0903340 | Msa0921390 | 0.802793 | 4.739457e-49 | -8.615850e-47 |
| Msa0903340 | Msa0930770 | 0.846796 | 1.734537e-59 | -8.615850e-47 |
| Msa0903340 | Msa0967780 | 0.808158 | 3.553867e-50 | -8.615850e-47 |
| Msa0903340 | Msa0973080 | -0.801310 | 9.562986e-49 | -8.615850e-47 |
| Msa0903340 | Msa0982730 | 0.821472 | 3.965354e-53 | -8.615850e-47 |
| Msa0903340 | Msa1021560 | 0.815215 | 1.036387e-51 | -8.615850e-47 |
| Msa0903340 | Msa1022420 | 0.802667 | 5.032180e-49 | -8.615850e-47 |
| Msa0903340 | Msa1042300 | 0.813764 | 2.170389e-51 | -8.615850e-47 |
| Msa0903340 | Msa1044250 | 0.824541 | 7.632338e-54 | -8.615850e-47 |
| Msa0903340 | Msa1057620 | -0.802409 | 5.688269e-49 | -8.615850e-47 |
| Msa0903340 | Msa1102060 | -0.816430 | 5.553227e-52 | -8.615850e-47 |
| Msa0903340 | Msa1124210 | 0.812621 | 3.865772e-51 | -8.615850e-47 |
| Msa0903340 | Msa1145300 | 0.803025 | 4.244491e-49 | -8.615850e-47 |
| Msa0903340 | Msa1147700 | 0.820691 | 5.998904e-53 | -8.615850e-47 |
| Msa0903340 | Msa1149910 | 0.823692 | 1.207966e-53 | -8.615850e-47 |
| Msa0903340 | Msa1175120 | 0.802260 | 6.103539e-49 | -8.615850e-47 |
| Msa0903340 | Msa1188340 | 0.811063 | 8.441534e-51 | -8.615850e-47 |
| Msa0903340 | Msa1192360 | 0.826858 | 2.154018e-54 | -8.615850e-47 |
| Msa0903340 | Msa1206040 | 0.812376 | 4.374182e-51 | -8.615850e-47 |
| Msa0903340 | Msa1217890 | 0.822338 | 2.498743e-53 | -8.615850e-47 |
| Msa0903340 | Msa1220580 | 0.800065 | 1.716628e-48 | -8.615850e-47 |
| Msa0903340 | Msa1223390 | 0.801961 | 7.031974e-49 | -8.615850e-47 |
| Msa0903340 | Msa1240940 | 0.839315 | 1.705283e-57 | -8.615850e-47 |
| Msa0903340 | Msa1254100 | 0.821444 | 4.025629e-53 | -8.615850e-47 |
| Msa0903340 | Msa1266120 | -0.800577 | 1.350443e-48 | -8.615850e-47 |
| Msa0903340 | Msa1282300 | 0.862911 | 3.622138e-64 | -8.615850e-47 |
| Msa0903340 | Msa1294280 | 0.811718 | 6.085563e-51 | -8.615850e-47 |
| Msa0903340 | Msa1328280 | 0.808976 | 2.376652e-50 | -8.615850e-47 |
| Msa0903340 | Msa1328870 | 0.812510 | 4.088039e-51 | -8.615850e-47 |
| Msa0903340 | Msa1334560 | 0.808491 | 3.017240e-50 | -8.615850e-47 |
| Msa0903340 | Msa1347390 | 0.800070 | 1.712338e-48 | -8.615850e-47 |
| Msa0903340 | Msa1366140 | -0.809197 | 2.131808e-50 | -8.615850e-47 |
| Msa0903340 | Msa1387450 | -0.800216 | 1.599051e-48 | -8.615850e-47 |
| Msa0903340 | Msa1396200 | -0.825324 | 4.989252e-54 | -8.615850e-47 |
| Msa0903340 | Msa1402010 | 0.826197 | 3.096020e-54 | -8.615850e-47 |
| Msa0903340 | Msa1416190 | 0.807885 | 4.061922e-50 | -8.615850e-47 |
| Msa0903340 | Msa1421630 | 0.800019 | 1.753851e-48 | -8.615850e-47 |
| Msa0903340 | Msa1422860 | 0.806180 | 9.324321e-50 | -8.615850e-47 |
| Msa0903340 | Msa1432520 | 0.814773 | 1.298520e-51 | -8.615850e-47 |
| Msa0903340 | Msa1436620 | 0.821033 | 5.006750e-53 | -8.615850e-47 |
| Msa0903340 | Msa1447100 | 0.800738 | 1.251914e-48 | -8.615850e-47 |
| Msa0903340 | Msa1449900 | 0.801160 | 1.026420e-48 | -8.615850e-47 |
| Msa0903340 | Msa1457770 | 0.801938 | 7.110574e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903340 | MtrunA17_Chr6g0451481 | 89.655 | 232 | 11 | 3 | 1 | 232 | 1 | 219 | 3.65e-126 | 356 |
| Msa0903340 | MtrunA17_Chr6g0451501 | 49.645 | 141 | 56 | 3 | 96 | 232 | 33 | 162 | 4.42e-39 | 132 |
| Msa0903340 | MtrunA17_Chr6g0451501 | 55.556 | 99 | 24 | 4 | 1 | 79 | 1 | 99 | 2.32e-19 | 81.6 |
| Msa0903340 | MtrunA17_Chr6g0451491 | 60.577 | 104 | 36 | 2 | 134 | 232 | 27 | 130 | 3.53e-35 | 121 |
| Msa0903340 | MtrunA17_Chr8g0364311 | 68.750 | 64 | 20 | 0 | 169 | 232 | 49 | 112 | 2.82e-27 | 100 |
| Msa0903340 | MtrunA17_Chr4g0059421 | 72.131 | 61 | 17 | 0 | 172 | 232 | 55 | 115 | 5.47e-24 | 92.4 |
| Msa0903340 | MtrunA17_Chr1g0200531 | 55.224 | 67 | 29 | 1 | 166 | 232 | 35 | 100 | 5.62e-18 | 76.3 |
| Msa0903340 | MtrunA17_Chr3g0142671 | 53.030 | 66 | 30 | 1 | 167 | 232 | 39 | 103 | 1.34e-15 | 70.1 |
| Msa0903340 | MtrunA17_Chr1g0156601 | 59.016 | 61 | 24 | 1 | 172 | 232 | 42 | 101 | 3.77e-15 | 68.9 |
| Msa0903340 | MtrunA17_Chr1g0156621 | 57.377 | 61 | 25 | 1 | 172 | 232 | 41 | 100 | 2.36e-13 | 63.9 |
| Msa0903340 | MtrunA17_Chr1g0207611 | 47.541 | 61 | 31 | 1 | 172 | 232 | 31 | 90 | 2.10e-11 | 58.5 |
| Msa0903340 | MtrunA17_Chr5g0415001 | 46.774 | 62 | 32 | 1 | 171 | 232 | 32 | 92 | 3.61e-11 | 58.2 |
| Msa0903340 | MtrunA17_Chr8g0371941 | 46.753 | 77 | 35 | 2 | 156 | 232 | 33 | 103 | 7.07e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903340 | AT5G14920.1 | 66.154 | 65 | 22 | 0 | 168 | 232 | 211 | 275 | 5.30e-28 | 107 |
| Msa0903340 | AT1G75750.1 | 57.377 | 61 | 25 | 1 | 172 | 232 | 39 | 98 | 1.78e-14 | 67.4 |
| Msa0903340 | AT1G75750.2 | 57.377 | 61 | 25 | 1 | 172 | 232 | 38 | 97 | 2.02e-14 | 67.4 |
| Msa0903340 | AT2G18420.1 | 57.377 | 61 | 25 | 1 | 172 | 232 | 35 | 94 | 2.18e-13 | 64.3 |
| Msa0903340 | AT2G18420.2 | 57.377 | 61 | 25 | 1 | 172 | 232 | 11 | 70 | 2.91e-13 | 63.5 |
| Msa0903340 | AT1G22690.1 | 52.459 | 61 | 28 | 1 | 172 | 232 | 60 | 119 | 3.27e-13 | 64.7 |
| Msa0903340 | AT1G22690.2 | 52.459 | 61 | 28 | 1 | 172 | 232 | 60 | 119 | 3.27e-13 | 64.7 |
| Msa0903340 | AT1G22690.3 | 52.459 | 61 | 28 | 1 | 172 | 232 | 60 | 119 | 3.27e-13 | 64.7 |
| Msa0903340 | AT4G09600.1 | 55.738 | 61 | 26 | 1 | 172 | 232 | 40 | 99 | 8.75e-13 | 62.8 |
| Msa0903340 | AT2G14900.1 | 37.209 | 86 | 49 | 3 | 149 | 232 | 26 | 108 | 7.83e-11 | 57.8 |
Find 89 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCCATGATTTGACTAT+TGG | 0.212965 | 6_2:-443528 | None:intergenic |
| GAATTTAGATTGAAATTAAA+TGG | 0.241741 | 6_2:+444939 | Msa0903340:three_prime_UTR |
| CTAAATTCAAACAAAATTCT+TGG | 0.242055 | 6_2:-444924 | None:intergenic |
| GCATTCCACTATGTGGTTAT+AGG | 0.264033 | 6_2:+443949 | Msa0903340:CDS |
| ATTATGCTTAAATTGTTATA+AGG | 0.284454 | 6_2:+444176 | Msa0903340:three_prime_UTR |
| GTTATAAGGTTTAAAATTGC+TGG | 0.298557 | 6_2:+444190 | Msa0903340:three_prime_UTR |
| ATCACCTCCTTCTCCTCCTT+TGG | 0.313521 | 6_2:+443374 | Msa0903340:CDS |
| TGCATTATATAATGTATCTA+TGG | 0.348800 | 6_2:-444125 | None:intergenic |
| CAAGCATGGACAAGAAAGTA+TGG | 0.359856 | 6_2:-442048 | None:intergenic |
| GCTGGTTTATTAAATAACTT+AGG | 0.371594 | 6_2:+444208 | Msa0903340:three_prime_UTR |
| TATATAATGCACCTATCTAA+TGG | 0.377533 | 6_2:+444137 | Msa0903340:three_prime_UTR |
| TCTCTGTTACCATAAGTTCC+TGG | 0.385043 | 6_2:-444047 | None:intergenic |
| GCAACGGGTGGTTTAACTAT+TGG | 0.388569 | 6_2:-443486 | None:intergenic |
| TGTGTCCCTCCAGGAACTTA+TGG | 0.404918 | 6_2:+444038 | Msa0903340:CDS |
| CGGCAAGTGTTACACTGATA+TGG | 0.419704 | 6_2:+444076 | Msa0903340:CDS |
| ACTATTGGTGGTGATTGATA+AGG | 0.424720 | 6_2:-443471 | None:intergenic |
| ACAATAGGTGGTGATTGATA+TGG | 0.436890 | 6_2:-443408 | None:intergenic |
| TATAGTAACACCACCTTCTC+CGG | 0.444365 | 6_2:+443170 | Msa0903340:CDS |
| GAAGGAGGTGATTTCACTAT+AGG | 0.446578 | 6_2:-443363 | None:intergenic |
| GAAGGAGGTGATTTCACAAT+AGG | 0.447190 | 6_2:-443258 | None:intergenic |
| GTTGGTGGTGCCTTCACAAT+AGG | 0.455469 | 6_2:-443423 | None:intergenic |
| CTGGTTTATTAAATAACTTA+GGG | 0.455854 | 6_2:+444209 | Msa0903340:three_prime_UTR |
| GGTGGTGGAGATGGAGCAAC+GGG | 0.459800 | 6_2:-443501 | None:intergenic |
| GAGTAAAGATTATACCTTAG+TGG | 0.470762 | 6_2:-442122 | None:intergenic |
| TTACATAGAAACCATTAGAT+AGG | 0.471222 | 6_2:-444148 | None:intergenic |
| CTACTCCAATAGTCAAATCA+TGG | 0.478634 | 6_2:+443523 | Msa0903340:CDS |
| GGAGAAGGTGGTGTTACTAT+AGG | 0.480331 | 6_2:-443168 | None:intergenic |
| GATTTCACTATAGGTGGAGT+TGG | 0.487620 | 6_2:-443354 | None:intergenic |
| ATCACCTCCTTCTCCACCAT+TGG | 0.492228 | 6_2:+443269 | Msa0903340:CDS |
| AACAAAATTCTTGGACCACA+TGG | 0.492555 | 6_2:-444915 | None:intergenic |
| ATAGGTGGTGTTGGTTTCAC+TGG | 0.498511 | 6_2:-443240 | None:intergenic |
| GATTTCACAATAGGTGGTGT+TGG | 0.507384 | 6_2:-443249 | None:intergenic |
| TTCACTGGTGGTGATTGATA+AGG | 0.508150 | 6_2:-443225 | None:intergenic |
| TTCACAATAGGTGGAGAAGT+TGG | 0.508969 | 6_2:-443441 | None:intergenic |
| TGATGAAGATCTCAAGATAG+TGG | 0.509151 | 6_2:+442345 | Msa0903340:CDS |
| CGGTGCAAATGTGTCCCTCC+AGG | 0.510158 | 6_2:+444029 | Msa0903340:CDS |
| CTAGTCTTTCAATTATATAG+AGG | 0.512549 | 6_2:-441980 | None:intergenic |
| GAAATTAAATGGTATTGTCA+TGG | 0.514776 | 6_2:+444950 | Msa0903340:three_prime_UTR |
| GGTGATTTCACTGGTGTTGG+TGG | 0.516723 | 6_2:-443201 | None:intergenic |
| TAATGTATCTATGGACACTT+AGG | 0.518660 | 6_2:-444116 | None:intergenic |
| CATGATTTGACTATTGGAGT+AGG | 0.520632 | 6_2:-443522 | None:intergenic |
| GATTTCACCAATGGTGGAGA+AGG | 0.523656 | 6_2:-443276 | None:intergenic |
| GGTGGTGATTTCACTGGTGT+TGG | 0.528464 | 6_2:-443204 | None:intergenic |
| TTGACTATTGGAGTAGGTGG+TGG | 0.529784 | 6_2:-443516 | None:intergenic |
| GGTGGAGTTGGTTTCACTAG+AGG | 0.533720 | 6_2:-443342 | None:intergenic |
| TTTCAATTATATAGAGGTCA+AGG | 0.537990 | 6_2:-441974 | None:intergenic |
| TCCAATAGTCAAATCATGGA+AGG | 0.539250 | 6_2:+443527 | Msa0903340:CDS |
| GGTGTTGGTGGTGCCTTCAC+CGG | 0.539827 | 6_2:-443189 | None:intergenic |
| ATTGGAGTAGGTGGTGGAGA+TGG | 0.542148 | 6_2:-443510 | None:intergenic |
| ATAGGACTTGGTGGAGCTGT+AGG | 0.545890 | 6_2:-443150 | None:intergenic |
| GGTTTCACTAGAGGAGGAGA+AGG | 0.546233 | 6_2:-443333 | None:intergenic |
| ACGGGTGGTTTAACTATTGG+TGG | 0.554878 | 6_2:-443483 | None:intergenic |
| AACACCACCTTCTCCGGTGA+AGG | 0.555008 | 6_2:+443176 | Msa0903340:CDS |
| GGTGGTGCCTTCACCGGAGA+AGG | 0.559907 | 6_2:-443183 | None:intergenic |
| TGATAAGGTGGTGATTTCAC+TGG | 0.560885 | 6_2:-443210 | None:intergenic |
| GGTGTTACTATAGGACTTGG+TGG | 0.562271 | 6_2:-443159 | None:intergenic |
| TGGCACCTATAACCACATAG+TGG | 0.564127 | 6_2:-443954 | None:intergenic |
| ACAATGGGTGGTGATTGATA+AGG | 0.565916 | 6_2:-443303 | None:intergenic |
| GGTGGTGTTACTATAGGACT+TGG | 0.566564 | 6_2:-443162 | None:intergenic |
| GGAGTTGGTTTCACTAGAGG+AGG | 0.568511 | 6_2:-443339 | None:intergenic |
| GGAGGTGATTTCACTATAGG+TGG | 0.571713 | 6_2:-443360 | None:intergenic |
| GATTTCACCAAAGGAGGAGA+AGG | 0.575108 | 6_2:-443381 | None:intergenic |
| GGTGGTGATTTCACCAATGG+TGG | 0.582052 | 6_2:-443282 | None:intergenic |
| TTCACCAATGGTGGAGAAGG+AGG | 0.582308 | 6_2:-443273 | None:intergenic |
| CTGGAGGGACACATTTGCAC+CGG | 0.583431 | 6_2:-444028 | None:intergenic |
| TATGGTGGTGATTTCACCAA+AGG | 0.585083 | 6_2:-443390 | None:intergenic |
| ACAATAGGTGGAGAAGTTGG+TGG | 0.588072 | 6_2:-443438 | None:intergenic |
| ATGGGTGGTGATTGATAAGG+TGG | 0.588702 | 6_2:-443300 | None:intergenic |
| GCAGATTGCATTCCACTATG+TGG | 0.591494 | 6_2:+443942 | Msa0903340:intron |
| CCAATAGTCAAATCATGGAA+GGG | 0.592284 | 6_2:+443528 | Msa0903340:CDS |
| TTCACCAAAGGAGGAGAAGG+AGG | 0.592496 | 6_2:-443378 | None:intergenic |
| GGTGGTGTTGGTTTCACTGG+TGG | 0.594612 | 6_2:-443237 | None:intergenic |
| GGAGGTGATTTCACAATAGG+TGG | 0.599121 | 6_2:-443255 | None:intergenic |
| GGTGCCTTCACCGGAGAAGG+TGG | 0.603044 | 6_2:-443180 | None:intergenic |
| GGTGGTGATTTCACCAAAGG+AGG | 0.611468 | 6_2:-443387 | None:intergenic |
| TCAATCACCACCTATTGTGA+AGG | 0.614574 | 6_2:+443413 | Msa0903340:CDS |
| ATTGGTGGTGATTGATAAGG+AGG | 0.614855 | 6_2:-443468 | None:intergenic |
| TAAGGTGGTGATTTCACCAA+TGG | 0.624025 | 6_2:-443285 | None:intergenic |
| GGTGGAGATGGAGCAACGGG+TGG | 0.624374 | 6_2:-443498 | None:intergenic |
| ACTGGTGGTGATTGATAAGG+TGG | 0.624494 | 6_2:-443222 | None:intergenic |
| CATGCATGACTTGTTGTGAC+CGG | 0.628034 | 6_2:+444009 | Msa0903340:CDS |
| TACACTGATATGGTGACTCA+TGG | 0.628922 | 6_2:+444086 | Msa0903340:CDS |
| AGGTGGTGGAGATGGAGCAA+CGG | 0.631979 | 6_2:-443502 | None:intergenic |
| CTGTTACCATAAGTTCCTGG+AGG | 0.651625 | 6_2:-444044 | None:intergenic |
| GATTTGACTATTGGAGTAGG+TGG | 0.657281 | 6_2:-443519 | None:intergenic |
| ATAGGTGGTGATTGATATGG+TGG | 0.660010 | 6_2:-443405 | None:intergenic |
| GGTGGTGCCTTCACAATAGG+TGG | 0.683057 | 6_2:-443420 | None:intergenic |
| TGTTACCATAAGTTCCTGGA+GGG | 0.694188 | 6_2:-444043 | None:intergenic |
| TCTATGTAATATGATCCATG+TGG | 0.767847 | 6_2:+444900 | Msa0903340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAATTAGAAGTA+TGG | - | chr6_2:442767-442786 | None:intergenic | 10.0% |
| !! | CAAAAATATGATTATATATT+TGG | + | chr6_2:443698-443717 | Msa0903340:intron | 10.0% |
| !! | TAAATAATATGTAAATTCAA+TGG | - | chr6_2:443794-443813 | None:intergenic | 10.0% |
| !! | TTTCAAATAAAAGAAAATAA+AGG | - | chr6_2:444497-444516 | None:intergenic | 10.0% |
| !! | TATTTATAACAAAAAAGTAA+AGG | - | chr6_2:444539-444558 | None:intergenic | 10.0% |
| !!! | ATATAAATCACTTTTATATT+AGG | + | chr6_2:444626-444645 | Msa0903340:intron | 10.0% |
| !!! | TATAAATCACTTTTATATTA+GGG | + | chr6_2:444627-444646 | Msa0903340:intron | 10.0% |
| !! | TAAATCAAGAAGAAAAAAAT+TGG | - | chr6_2:442254-442273 | None:intergenic | 15.0% |
| !! | AAAATTAGTAATGTGATATT+TGG | + | chr6_2:443107-443126 | Msa0903340:intron | 15.0% |
| !!! | ATATAATAGTTTTAGATGTT+TGG | + | chr6_2:443643-443662 | Msa0903340:intron | 15.0% |
| !!! | TTTTTAATTCACATATATTG+TGG | + | chr6_2:443831-443850 | Msa0903340:intron | 15.0% |
| !! | ATTATGCTTAAATTGTTATA+AGG | + | chr6_2:444176-444195 | Msa0903340:three_prime_UTR | 15.0% |
| !! | GAATTTAGATTGAAATTAAA+TGG | + | chr6_2:444939-444958 | Msa0903340:three_prime_UTR | 15.0% |
| !! | AACATATTTATCTACTTAGA+AGG | + | chr6_2:442170-442189 | Msa0903340:intron | 20.0% |
| !! | TATAATATATCTTTATGTGC+AGG | + | chr6_2:442312-442331 | Msa0903340:intron | 20.0% |
| !! | GAATCAAACAAAAATAGAAA+GGG | - | chr6_2:442398-442417 | None:intergenic | 20.0% |
| !!! | GTTGATCTGTTTTTTAATAA+AGG | - | chr6_2:442572-442591 | None:intergenic | 20.0% |
| !!! | ATAAAAATTAGAAGTATGGT+AGG | - | chr6_2:442763-442782 | None:intergenic | 20.0% |
| !! | TTGACAAAATTATCGTAATA+TGG | - | chr6_2:442881-442900 | None:intergenic | 20.0% |
| !!! | CATCTAAAACTATTATATTG+TGG | - | chr6_2:443641-443660 | None:intergenic | 20.0% |
| !!! | TAACTTTTTTGCTCTTTTTT+TGG | + | chr6_2:443723-443742 | Msa0903340:intron | 20.0% |
| !!! | AAACCTGTATTTTTATTTTG+TGG | + | chr6_2:443919-443938 | Msa0903340:intron | 20.0% |
| !!! | AACCTGTATTTTTATTTTGT+GGG | + | chr6_2:443920-443939 | Msa0903340:intron | 20.0% |
| !! | TGCATTATATAATGTATCTA+TGG | - | chr6_2:444128-444147 | None:intergenic | 20.0% |
| !! | CTGGTTTATTAAATAACTTA+GGG | + | chr6_2:444209-444228 | Msa0903340:three_prime_UTR | 20.0% |
| !! | CTAAATTCAAACAAAATTCT+TGG | - | chr6_2:444927-444946 | None:intergenic | 20.0% |
| !!! | ATGGAAATATATTTTGCTAT+TGG | + | chr6_2:444969-444988 | Msa0903340:three_prime_UTR | 20.0% |
| ! | TTTCAATTATATAGAGGTCA+AGG | - | chr6_2:441977-441996 | None:intergenic | 25.0% |
| !! | CTAGTCTTTCAATTATATAG+AGG | - | chr6_2:441983-442002 | None:intergenic | 25.0% |
| !!! | TCAAAATCCATTTTTCTTCT+AGG | + | chr6_2:442082-442101 | Msa0903340:CDS | 25.0% |
| ! | AAAAATGCCTAGAAGAAAAA+TGG | - | chr6_2:442092-442111 | None:intergenic | 25.0% |
| ! | ATATTTATCTACTTAGAAGG+TGG | + | chr6_2:442173-442192 | Msa0903340:intron | 25.0% |
| ! | GGAATCAAACAAAAATAGAA+AGG | - | chr6_2:442399-442418 | None:intergenic | 25.0% |
| ! | TTCTGATAAGGATGTTTAAA+GGG | - | chr6_2:442420-442439 | None:intergenic | 25.0% |
| ! | TTTCTGATAAGGATGTTTAA+AGG | - | chr6_2:442421-442440 | None:intergenic | 25.0% |
| ! | TAAGAAAGAACTTTCTGATA+AGG | - | chr6_2:442432-442451 | None:intergenic | 25.0% |
| ! | AGTTAGAGAAAAGAGAAATT+AGG | + | chr6_2:442626-442645 | Msa0903340:intron | 25.0% |
| !! | TCTAAAACTAAAAAGACCAA+TGG | + | chr6_2:442655-442674 | Msa0903340:intron | 25.0% |
| !! | TCTTTTCTATATCTTTCCAT+TGG | - | chr6_2:442674-442693 | None:intergenic | 25.0% |
| !!! | AAAAATCCTTGTTTGTTATG+AGG | - | chr6_2:442826-442845 | None:intergenic | 25.0% |
| !! | AAATATGAAGTGTTACGTTA+TGG | - | chr6_2:442909-442928 | None:intergenic | 25.0% |
| !! | TTGTATGGTAGTTAATGTTT+TGG | - | chr6_2:442936-442955 | None:intergenic | 25.0% |
| !!! | TGTTTGGCATAAAACTTTTT+TGG | + | chr6_2:443659-443678 | Msa0903340:intron | 25.0% |
| ! | TATGTACAAGTTACAAAGTT+AGG | - | chr6_2:443768-443787 | None:intergenic | 25.0% |
| ! | TGAGAAGTAGTGATTAATAT+CGG | + | chr6_2:443865-443884 | Msa0903340:intron | 25.0% |
| ! | TATATAATGCACCTATCTAA+TGG | + | chr6_2:444137-444156 | Msa0903340:three_prime_UTR | 25.0% |
| ! | TTACATAGAAACCATTAGAT+AGG | - | chr6_2:444151-444170 | None:intergenic | 25.0% |
| !! | GTTATAAGGTTTAAAATTGC+TGG | + | chr6_2:444190-444209 | Msa0903340:three_prime_UTR | 25.0% |
| !! | GCTGGTTTATTAAATAACTT+AGG | + | chr6_2:444208-444227 | Msa0903340:three_prime_UTR | 25.0% |
| ! | ACAAACATGTCTAAAAAGTA+GGG | - | chr6_2:444438-444457 | None:intergenic | 25.0% |
| ! | TAATGTAATGTTGATCACTA+AGG | - | chr6_2:444823-444842 | None:intergenic | 25.0% |
| ! | GAAATTAAATGGTATTGTCA+TGG | + | chr6_2:444950-444969 | Msa0903340:three_prime_UTR | 25.0% |
| GAGTAAAGATTATACCTTAG+TGG | - | chr6_2:442125-442144 | None:intergenic | 30.0% | |
| TTTCTCTAACTTAGAACAAG+AGG | - | chr6_2:442617-442636 | None:intergenic | 30.0% | |
| TATAGATGCACTCATTTGTA+TGG | - | chr6_2:442951-442970 | None:intergenic | 30.0% | |
| GAGTGAATTTGACAAAATCA+CGG | - | chr6_2:443033-443052 | None:intergenic | 30.0% | |
| ATCAAAGAAAGACAGAGAAA+TGG | - | chr6_2:443565-443584 | None:intergenic | 30.0% | |
| TGCCCACAAAATAAAAATAC+AGG | - | chr6_2:443925-443944 | None:intergenic | 30.0% | |
| ! | TGTTTTGCCTAGAATGTTTT+TGG | - | chr6_2:443977-443996 | None:intergenic | 30.0% |
| TATGGTAACAGAGAAAAATG+CGG | + | chr6_2:444056-444075 | Msa0903340:CDS | 30.0% | |
| TAATGTATCTATGGACACTT+AGG | - | chr6_2:444119-444138 | None:intergenic | 30.0% | |
| CTTGTTTGTTTCAAGAGAAA+GGG | + | chr6_2:444232-444251 | Msa0903340:intron | 30.0% | |
| ATAGAAAGTTTCTTGGAATG+TGG | + | chr6_2:444275-444294 | Msa0903340:intron | 30.0% | |
| TAGAAAGTTTCTTGGAATGT+GGG | + | chr6_2:444276-444295 | Msa0903340:intron | 30.0% | |
| AATCTATGCAAACCAAACTA+TGG | - | chr6_2:444306-444325 | None:intergenic | 30.0% | |
| ! | AATGGAAAGATTGATTTCAG+TGG | + | chr6_2:444329-444348 | Msa0903340:intron | 30.0% |
| ! | ATGGAAAGATTGATTTCAGT+GGG | + | chr6_2:444330-444349 | Msa0903340:intron | 30.0% |
| ! | AGGACATTTTGCTTAAAAAG+AGG | - | chr6_2:444409-444428 | None:intergenic | 30.0% |
| ! | TCTAAAAAGTAGGGGTATAT+AGG | - | chr6_2:444429-444448 | None:intergenic | 30.0% |
| CAAACATGTCTAAAAAGTAG+GGG | - | chr6_2:444437-444456 | None:intergenic | 30.0% | |
| CACAAACATGTCTAAAAAGT+AGG | - | chr6_2:444439-444458 | None:intergenic | 30.0% | |
| ! | ACTTTTTAGACATGTTTGTG+AGG | + | chr6_2:444439-444458 | Msa0903340:intron | 30.0% |
| ! | CTTTTTAGACATGTTTGTGA+GGG | + | chr6_2:444440-444459 | Msa0903340:intron | 30.0% |
| TGATTGTTTAGTTGTTTGGT+AGG | - | chr6_2:444704-444723 | None:intergenic | 30.0% | |
| GAGATGATTGTTTAGTTGTT+TGG | - | chr6_2:444708-444727 | None:intergenic | 30.0% | |
| GTTTAAGGAAAGAAAGTAAG+AGG | - | chr6_2:444777-444796 | None:intergenic | 30.0% | |
| TCTATGTAATATGATCCATG+TGG | + | chr6_2:444900-444919 | Msa0903340:three_prime_UTR | 30.0% | |
| CTTGTCCATGCTTGAAAAAA+TGG | + | chr6_2:442057-442076 | Msa0903340:exon | 35.0% | |
| !!! | TGAAGCCATTTTTTCAAGCA+TGG | - | chr6_2:442065-442084 | None:intergenic | 35.0% |
| TGATGAAGATCTCAAGATAG+TGG | + | chr6_2:442345-442364 | Msa0903340:CDS | 35.0% | |
| TTATGAGGTTAGGGAAATGT+AGG | - | chr6_2:442811-442830 | None:intergenic | 35.0% | |
| !! | CCTTGTTTGTTATGAGGTTA+GGG | - | chr6_2:442820-442839 | None:intergenic | 35.0% |
| !! | TCCTTGTTTGTTATGAGGTT+AGG | - | chr6_2:442821-442840 | None:intergenic | 35.0% |
| TCTCGTCTATAGTAAAATCG+CGG | - | chr6_2:442980-442999 | None:intergenic | 35.0% | |
| TTGACAAAATCACGGTAACA+TGG | - | chr6_2:443025-443044 | None:intergenic | 35.0% | |
| !! | AGTAATGTGATATTTGGTGC+AGG | + | chr6_2:443113-443132 | Msa0903340:intron | 35.0% |
| ACAATAGGTGGTGATTGATA+TGG | - | chr6_2:443411-443430 | None:intergenic | 35.0% | |
| !!! | TAAGGAGGTGTTTTCACAAT+AGG | - | chr6_2:443456-443475 | None:intergenic | 35.0% |
| !! | ACTATTGGTGGTGATTGATA+AGG | - | chr6_2:443474-443493 | None:intergenic | 35.0% |
| CATGATTTGACTATTGGAGT+AGG | - | chr6_2:443525-443544 | None:intergenic | 35.0% | |
| CTACTCCAATAGTCAAATCA+TGG | + | chr6_2:443523-443542 | Msa0903340:CDS | 35.0% | |
| TCCAATAGTCAAATCATGGA+AGG | + | chr6_2:443527-443546 | Msa0903340:CDS | 35.0% | |
| CCAATAGTCAAATCATGGAA+GGG | + | chr6_2:443528-443547 | Msa0903340:CDS | 35.0% | |
| !!! | CTCTTTTTTTGGTACTAGAG+AGG | + | chr6_2:443734-443753 | Msa0903340:intron | 35.0% |
| AAGTTACAAAGTTAGGCATG+TGG | - | chr6_2:443761-443780 | None:intergenic | 35.0% | |
| ATAGGTGCCAAAAACATTCT+AGG | + | chr6_2:443967-443986 | Msa0903340:CDS | 35.0% | |
| GCTTGTTTGTTTCAAGAGAA+AGG | + | chr6_2:444231-444250 | Msa0903340:intron | 35.0% | |
| TTTGTTTCAAGAGAAAGGGT+AGG | + | chr6_2:444236-444255 | Msa0903340:intron | 35.0% | |
| TTGTTTCAAGAGAAAGGGTA+GGG | + | chr6_2:444237-444256 | Msa0903340:intron | 35.0% | |
| CAAGAAACTTTCTATCCCAT+AGG | - | chr6_2:444270-444289 | None:intergenic | 35.0% | |
| CTATGGGATAGAAAGTTTCT+TGG | + | chr6_2:444268-444287 | Msa0903340:intron | 35.0% | |
| ! | TGGTTTGCATAGATTGAGAA+TGG | + | chr6_2:444311-444330 | Msa0903340:intron | 35.0% |
| GAAAGTGAATAGAAAGTGAG+TGG | - | chr6_2:444736-444755 | None:intergenic | 35.0% | |
| GGAAGAGAAGAGAAAGTTTA+AGG | - | chr6_2:444792-444811 | None:intergenic | 35.0% | |
| !! | TTGATCACTAAGGCTTTGTT+TGG | - | chr6_2:444813-444832 | None:intergenic | 35.0% |
| AACAAAATTCTTGGACCACA+TGG | - | chr6_2:444918-444937 | None:intergenic | 35.0% | |
| CAAGCATGGACAAGAAAGTA+TGG | - | chr6_2:442051-442070 | None:intergenic | 40.0% | |
| ! | TCTAGGCATTTTTCTTGTGC+TGG | + | chr6_2:442099-442118 | Msa0903340:CDS | 40.0% |
| CCCTAACCTCATAACAAACA+AGG | + | chr6_2:442817-442836 | Msa0903340:intron | 40.0% | |
| TATAGTAACACCACCTTCTC+CGG | + | chr6_2:443170-443189 | Msa0903340:CDS | 40.0% | |
| TGATAAGGTGGTGATTTCAC+TGG | - | chr6_2:443213-443232 | None:intergenic | 40.0% | |
| ! | TTCACTGGTGGTGATTGATA+AGG | - | chr6_2:443228-443247 | None:intergenic | 40.0% |
| GATTTCACAATAGGTGGTGT+TGG | - | chr6_2:443252-443271 | None:intergenic | 40.0% | |
| GAAGGAGGTGATTTCACAAT+AGG | - | chr6_2:443261-443280 | None:intergenic | 40.0% | |
| TAAGGTGGTGATTTCACCAA+TGG | - | chr6_2:443288-443307 | None:intergenic | 40.0% | |
| ACAATGGGTGGTGATTGATA+AGG | - | chr6_2:443306-443325 | None:intergenic | 40.0% | |
| !!! | GGAGAAGGTGCTTTTACAAT+GGG | - | chr6_2:443321-443340 | None:intergenic | 40.0% |
| !!! | AGGAGAAGGTGCTTTTACAA+TGG | - | chr6_2:443322-443341 | None:intergenic | 40.0% |
| GATTTCACTATAGGTGGAGT+TGG | - | chr6_2:443357-443376 | None:intergenic | 40.0% | |
| GAAGGAGGTGATTTCACTAT+AGG | - | chr6_2:443366-443385 | None:intergenic | 40.0% | |
| ! | TATGGTGGTGATTTCACCAA+AGG | - | chr6_2:443393-443412 | None:intergenic | 40.0% |
| ATAGGTGGTGATTGATATGG+TGG | - | chr6_2:443408-443427 | None:intergenic | 40.0% | |
| TCAATCACCACCTATTGTGA+AGG | + | chr6_2:443413-443432 | Msa0903340:CDS | 40.0% | |
| TTCACAATAGGTGGAGAAGT+TGG | - | chr6_2:443444-443463 | None:intergenic | 40.0% | |
| !! | ATTGGTGGTGATTGATAAGG+AGG | - | chr6_2:443471-443490 | None:intergenic | 40.0% |
| GATTTGACTATTGGAGTAGG+TGG | - | chr6_2:443522-443541 | None:intergenic | 40.0% | |
| CCCTTCCATGATTTGACTAT+TGG | - | chr6_2:443531-443550 | None:intergenic | 40.0% | |
| GCATTCCACTATGTGGTTAT+AGG | + | chr6_2:443949-443968 | Msa0903340:CDS | 40.0% | |
| TGTTACCATAAGTTCCTGGA+GGG | - | chr6_2:444046-444065 | None:intergenic | 40.0% | |
| TCTCTGTTACCATAAGTTCC+TGG | - | chr6_2:444050-444069 | None:intergenic | 40.0% | |
| TACACTGATATGGTGACTCA+TGG | + | chr6_2:444086-444105 | Msa0903340:CDS | 40.0% | |
| AATGTGGGCTTTCCATAGTT+TGG | + | chr6_2:444291-444310 | Msa0903340:intron | 40.0% | |
| !!! | CGGAAAGTTTTTAGAGCATG+GGG | - | chr6_2:444356-444375 | None:intergenic | 40.0% |
| !!! | GCGGAAAGTTTTTAGAGCAT+GGG | - | chr6_2:444357-444376 | None:intergenic | 40.0% |
| !!! | TGCGGAAAGTTTTTAGAGCA+TGG | - | chr6_2:444358-444377 | None:intergenic | 40.0% |
| !! | ATGCTCTAAAAACTTTCCGC+AGG | + | chr6_2:444357-444376 | Msa0903340:intron | 40.0% |
| !! | TTTTCTTGTGCTGGCCACTA+AGG | + | chr6_2:442108-442127 | Msa0903340:CDS | 45.0% |
| !! | GGTGTTACTATAGGACTTGG+TGG | - | chr6_2:443162-443181 | None:intergenic | 45.0% |
| !! | GGTGGTGTTACTATAGGACT+TGG | - | chr6_2:443165-443184 | None:intergenic | 45.0% |
| !! | GGAGAAGGTGGTGTTACTAT+AGG | - | chr6_2:443171-443190 | None:intergenic | 45.0% |
| ! | ACTGGTGGTGATTGATAAGG+TGG | - | chr6_2:443225-443244 | None:intergenic | 45.0% |
| !! | ATAGGTGGTGTTGGTTTCAC+TGG | - | chr6_2:443243-443262 | None:intergenic | 45.0% |
| GGAGGTGATTTCACAATAGG+TGG | - | chr6_2:443258-443277 | None:intergenic | 45.0% | |
| ! | GATTTCACCAATGGTGGAGA+AGG | - | chr6_2:443279-443298 | None:intergenic | 45.0% |
| ATGGGTGGTGATTGATAAGG+TGG | - | chr6_2:443303-443322 | None:intergenic | 45.0% | |
| !!! | GAAGGTGCTTTTACAATGGG+TGG | - | chr6_2:443318-443337 | None:intergenic | 45.0% |
| GGAGGTGATTTCACTATAGG+TGG | - | chr6_2:443363-443382 | None:intergenic | 45.0% | |
| GATTTCACCAAAGGAGGAGA+AGG | - | chr6_2:443384-443403 | None:intergenic | 45.0% | |
| ACAATAGGTGGAGAAGTTGG+TGG | - | chr6_2:443441-443460 | None:intergenic | 45.0% | |
| !!! | GGAGGTGTTTTCACAATAGG+TGG | - | chr6_2:443453-443472 | None:intergenic | 45.0% |
| ACGGGTGGTTTAACTATTGG+TGG | - | chr6_2:443486-443505 | None:intergenic | 45.0% | |
| GCAACGGGTGGTTTAACTAT+TGG | - | chr6_2:443489-443508 | None:intergenic | 45.0% | |
| TTGACTATTGGAGTAGGTGG+TGG | - | chr6_2:443519-443538 | None:intergenic | 45.0% | |
| GCAGATTGCATTCCACTATG+TGG | + | chr6_2:443942-443961 | Msa0903340:intron | 45.0% | |
| TGGCACCTATAACCACATAG+TGG | - | chr6_2:443957-443976 | None:intergenic | 45.0% | |
| !! | CATGCATGACTTGTTGTGAC+CGG | + | chr6_2:444009-444028 | Msa0903340:CDS | 45.0% |
| CTGTTACCATAAGTTCCTGG+AGG | - | chr6_2:444047-444066 | None:intergenic | 45.0% | |
| CGGCAAGTGTTACACTGATA+TGG | + | chr6_2:444076-444095 | Msa0903340:CDS | 45.0% | |
| TTCAAGAGAAAGGGTAGGGA+TGG | + | chr6_2:444241-444260 | Msa0903340:intron | 45.0% | |
| AGGATTGTGTGAGGAAAGGA+AGG | + | chr6_2:444377-444396 | Msa0903340:intron | 45.0% | |
| TGGTAGGAGTGAAAGTGAAG+AGG | - | chr6_2:444688-444707 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTAAGAAAATT+AGG | + | chr6_2:442841-442860 | Msa0903340:intron | 5.0% |
| !!! | GTATAATATAAATTTTAAAA+AGG | - | chr6_2:444600-444619 | None:intergenic | 5.0% |
| !! | ATAGGACTTGGTGGAGCTGT+AGG | - | chr6_2:443153-443172 | None:intergenic | 50.0% |
| ! | GGTGATTTCACTGGTGTTGG+TGG | - | chr6_2:443204-443223 | None:intergenic | 50.0% |
| GGTGGTGATTTCACTGGTGT+TGG | - | chr6_2:443207-443226 | None:intergenic | 50.0% | |
| ATCACCTCCTTCTCCACCAT+TGG | + | chr6_2:443269-443288 | Msa0903340:CDS | 50.0% | |
| ! | TTCACCAATGGTGGAGAAGG+AGG | - | chr6_2:443276-443295 | None:intergenic | 50.0% |
| GGTGGTGATTTCACCAATGG+TGG | - | chr6_2:443285-443304 | None:intergenic | 50.0% | |
| GGTTTCACTAGAGGAGGAGA+AGG | - | chr6_2:443336-443355 | None:intergenic | 50.0% | |
| ! | GGAGTTGGTTTCACTAGAGG+AGG | - | chr6_2:443342-443361 | None:intergenic | 50.0% |
| ! | GGTGGAGTTGGTTTCACTAG+AGG | - | chr6_2:443345-443364 | None:intergenic | 50.0% |
| ATCACCTCCTTCTCCTCCTT+TGG | + | chr6_2:443374-443393 | Msa0903340:CDS | 50.0% | |
| TTCACCAAAGGAGGAGAAGG+AGG | - | chr6_2:443381-443400 | None:intergenic | 50.0% | |
| GGTGGTGATTTCACCAAAGG+AGG | - | chr6_2:443390-443409 | None:intergenic | 50.0% | |
| !! | GTTGGTGGTGCCTTCACAAT+AGG | - | chr6_2:443426-443445 | None:intergenic | 50.0% |
| !! | ATTGGAGTAGGTGGTGGAGA+TGG | - | chr6_2:443513-443532 | None:intergenic | 50.0% |
| TGTGTCCCTCCAGGAACTTA+TGG | + | chr6_2:444038-444057 | Msa0903340:CDS | 50.0% | |
| ACTTTCCGCAGGATTGTGTG+AGG | + | chr6_2:444368-444387 | Msa0903340:intron | 50.0% | |
| CCTTTCCTCACACAATCCTG+CGG | - | chr6_2:444376-444395 | None:intergenic | 50.0% | |
| AACACCACCTTCTCCGGTGA+AGG | + | chr6_2:443176-443195 | Msa0903340:CDS | 55.0% | |
| !! | GGTGGTGTTGGTTTCACTGG+TGG | - | chr6_2:443240-443259 | None:intergenic | 55.0% |
| GGTGGTGCCTTCACAATAGG+TGG | - | chr6_2:443423-443442 | None:intergenic | 55.0% | |
| !! | AGGTGGTGGAGATGGAGCAA+CGG | - | chr6_2:443505-443524 | None:intergenic | 55.0% |
| CTGGAGGGACACATTTGCAC+CGG | - | chr6_2:444031-444050 | None:intergenic | 55.0% | |
| AGGGTAGGGATGGAAGCCTA+TGG | + | chr6_2:444251-444270 | Msa0903340:intron | 55.0% | |
| GGGTAGGGATGGAAGCCTAT+GGG | + | chr6_2:444252-444271 | Msa0903340:intron | 55.0% | |
| CCGCAGGATTGTGTGAGGAA+AGG | + | chr6_2:444373-444392 | Msa0903340:intron | 55.0% | |
| !! | GGTGTTGGTGGTGCCTTCAC+CGG | - | chr6_2:443192-443211 | None:intergenic | 60.0% |
| !! | GGTGGTGGAGATGGAGCAAC+GGG | - | chr6_2:443504-443523 | None:intergenic | 60.0% |
| CGGTGCAAATGTGTCCCTCC+AGG | + | chr6_2:444029-444048 | Msa0903340:CDS | 60.0% | |
| GGTGCCTTCACCGGAGAAGG+TGG | - | chr6_2:443183-443202 | None:intergenic | 65.0% | |
| GGTGGTGCCTTCACCGGAGA+AGG | - | chr6_2:443186-443205 | None:intergenic | 65.0% | |
| GGTGGAGATGGAGCAACGGG+TGG | - | chr6_2:443501-443520 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 441974 | 445055 | 441974 | ID=Msa0903340;Name=Msa0903340 |
| chr6_2 | mRNA | 441974 | 445055 | 441974 | ID=Msa0903340-mRNA-1;Parent=Msa0903340;Name=Msa0903340-mRNA-1;_AED=0.29;_eAED=0.29;_QI=90|1|1|1|0.75|0.6|5|329|232 |
| chr6_2 | exon | 441974 | 442129 | 441974 | ID=Msa0903340-mRNA-1:exon:222;Parent=Msa0903340-mRNA-1 |
| chr6_2 | exon | 442334 | 442366 | 442334 | ID=Msa0903340-mRNA-1:exon:223;Parent=Msa0903340-mRNA-1 |
| chr6_2 | exon | 443135 | 443549 | 443135 | ID=Msa0903340-mRNA-1:exon:224;Parent=Msa0903340-mRNA-1 |
| chr6_2 | exon | 443946 | 444229 | 443946 | ID=Msa0903340-mRNA-1:exon:225;Parent=Msa0903340-mRNA-1 |
| chr6_2 | exon | 444826 | 445055 | 444826 | ID=Msa0903340-mRNA-1:exon:226;Parent=Msa0903340-mRNA-1 |
| chr6_2 | five_prime_UTR | 441974 | 442063 | 441974 | ID=Msa0903340-mRNA-1:five_prime_utr;Parent=Msa0903340-mRNA-1 |
| chr6_2 | CDS | 442064 | 442129 | 442064 | ID=Msa0903340-mRNA-1:cds;Parent=Msa0903340-mRNA-1 |
| chr6_2 | CDS | 442334 | 442366 | 442334 | ID=Msa0903340-mRNA-1:cds;Parent=Msa0903340-mRNA-1 |
| chr6_2 | CDS | 443135 | 443549 | 443135 | ID=Msa0903340-mRNA-1:cds;Parent=Msa0903340-mRNA-1 |
| chr6_2 | CDS | 443946 | 444130 | 443946 | ID=Msa0903340-mRNA-1:cds;Parent=Msa0903340-mRNA-1 |
| chr6_2 | three_prime_UTR | 444131 | 444229 | 444131 | ID=Msa0903340-mRNA-1:three_prime_utr;Parent=Msa0903340-mRNA-1 |
| chr6_2 | three_prime_UTR | 444826 | 445055 | 444826 | ID=Msa0903340-mRNA-1:three_prime_utr;Parent=Msa0903340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
