Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1176730 | Msa1176740 | 0.802711 | 4.927264e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTATGTTTCATGCTTTA+AGG | 0.122956 | 8_1:-8929519 | Msa1176740:intron |
| ATCCTCCCATGAAAGATTCT+TGG | 0.272623 | 8_1:+8929113 | None:intergenic |
| AATGGAAGAGAATTTGTTAA+AGG | 0.291079 | 8_1:-8930852 | Msa1176740:CDS |
| ATCGTCTTTCTCACAAGAAT+TGG | 0.299465 | 8_1:-8929092 | Msa1176740:CDS |
| AAGCCAAGACAAGTTGTTAA+AGG | 0.343389 | 8_1:-8929139 | Msa1176740:CDS |
| CTTCCTTTAACAACTTGTCT+TGG | 0.403954 | 8_1:+8929136 | None:intergenic |
| ATCATATTTCTCATAAGAAC+TGG | 0.409458 | 8_1:-8930805 | Msa1176740:CDS |
| AGGAAGCCAAGAATCTTTCA+TGG | 0.445508 | 8_1:-8929119 | Msa1176740:CDS |
| ACTTGTCTTGGCTTCCTCGC+AGG | 0.500277 | 8_1:+8929148 | None:intergenic |
| TGAAACATAACATCTATTGC+AGG | 0.507712 | 8_1:+8929529 | None:intergenic |
| GAATTGGAAAGTTCGATATG+AGG | 0.538646 | 8_1:-8929076 | None:intergenic |
| TCGCAGGCAGGTGTATAAGA+AGG | 0.576086 | 8_1:+8929164 | None:intergenic |
| TTCTTATACACCTGCCTGCG+AGG | 0.583496 | 8_1:-8929162 | Msa1176740:CDS |
| AAAGAACAAAGTTGCTAAAG+CGG | 0.596159 | 8_1:-8929557 | Msa1176740:CDS |
| GGAAGCCAAGAATCTTTCAT+GGG | 0.608311 | 8_1:-8929118 | Msa1176740:CDS |
| AGCGAAGAAACTTCAATGCG+AGG | 0.628609 | 8_1:-8930828 | Msa1176740:CDS |
| AGCCAAGAATCTTTCATGGG+AGG | 0.635429 | 8_1:-8929115 | Msa1176740:CDS |
| TATTTCTCATAAGAACTGGA+AGG | 0.638189 | 8_1:-8930801 | Msa1176740:intron |
| GAACAAAGTTGCTAAAGCGG+TGG | 0.648636 | 8_1:-8929554 | Msa1176740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACAGTTATTATATTCTT+AGG | - | chr8_1:8929733-8929752 | Msa1176740:intron | 15.0% |
| !!! | TGACAATTCTATATATTTTA+TGG | - | chr8_1:8930140-8930159 | Msa1176740:intron | 15.0% |
| !! | AAAATAGATAACAATAAAAC+AGG | + | chr8_1:8930190-8930209 | None:intergenic | 15.0% |
| !! | ATTACAGTTATTATATTCTT+AGG | - | chr8_1:8929733-8929752 | Msa1176740:intron | 15.0% |
| !!! | TGACAATTCTATATATTTTA+TGG | - | chr8_1:8930140-8930159 | Msa1176740:intron | 15.0% |
| !! | AAAATAGATAACAATAAAAC+AGG | + | chr8_1:8930190-8930209 | None:intergenic | 15.0% |
| !!! | GTGATAAGAAATTATTTTGA+GGG | - | chr8_1:8929282-8929301 | Msa1176740:intron | 20.0% |
| !!! | TCATTCTTTTAAAAAGATTG+TGG | - | chr8_1:8929605-8929624 | Msa1176740:intron | 20.0% |
| !! | ATAGAAAAAGTTTATTGTTC+TGG | - | chr8_1:8929903-8929922 | Msa1176740:intron | 20.0% |
| !! | TTTAAATGTTCCAACATAAA+CGG | + | chr8_1:8930041-8930060 | None:intergenic | 20.0% |
| !! | AAATATATAGAATTGTCATG+TGG | + | chr8_1:8930138-8930157 | None:intergenic | 20.0% |
| !!! | GGTTCATAATATTTTTGATA+TGG | - | chr8_1:8930219-8930238 | Msa1176740:intron | 20.0% |
| !! | TTTCATTTCTTAAGATTCTT+TGG | - | chr8_1:8930247-8930266 | Msa1176740:intron | 20.0% |
| !! | TTCATTTCTTAAGATTCTTT+GGG | - | chr8_1:8930248-8930267 | Msa1176740:intron | 20.0% |
| !! | CAAAAGACTTAATAAAGAAA+GGG | + | chr8_1:8930322-8930341 | None:intergenic | 20.0% |
| !!! | TTAAGTCTTTTGGTAATTTT+AGG | - | chr8_1:8930330-8930349 | Msa1176740:intron | 20.0% |
| !!! | GTGATAAGAAATTATTTTGA+GGG | - | chr8_1:8929282-8929301 | Msa1176740:intron | 20.0% |
| !!! | TCATTCTTTTAAAAAGATTG+TGG | - | chr8_1:8929605-8929624 | Msa1176740:intron | 20.0% |
| !! | ATAGAAAAAGTTTATTGTTC+TGG | - | chr8_1:8929903-8929922 | Msa1176740:intron | 20.0% |
| !! | TTTAAATGTTCCAACATAAA+CGG | + | chr8_1:8930041-8930060 | None:intergenic | 20.0% |
| !! | AAATATATAGAATTGTCATG+TGG | + | chr8_1:8930138-8930157 | None:intergenic | 20.0% |
| !!! | GGTTCATAATATTTTTGATA+TGG | - | chr8_1:8930219-8930238 | Msa1176740:intron | 20.0% |
| !! | TTTCATTTCTTAAGATTCTT+TGG | - | chr8_1:8930247-8930266 | Msa1176740:intron | 20.0% |
| !! | TTCATTTCTTAAGATTCTTT+GGG | - | chr8_1:8930248-8930267 | Msa1176740:intron | 20.0% |
| !! | CAAAAGACTTAATAAAGAAA+GGG | + | chr8_1:8930322-8930341 | None:intergenic | 20.0% |
| !!! | TTAAGTCTTTTGGTAATTTT+AGG | - | chr8_1:8930330-8930349 | Msa1176740:intron | 20.0% |
| ! | ATCATATTTCTCATAAGAAC+TGG | - | chr8_1:8929124-8929143 | Msa1176740:CDS | 25.0% |
| ! | ATACTAACTAACCAAATTGA+AGG | + | chr8_1:8929224-8929243 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAAGTGTATGTT+TGG | - | chr8_1:8929252-8929271 | Msa1176740:intron | 25.0% |
| !!! | GGTGATAAGAAATTATTTTG+AGG | - | chr8_1:8929281-8929300 | Msa1176740:intron | 25.0% |
| ! | TCTGACTATAAACTTGTATT+TGG | - | chr8_1:8929312-8929331 | Msa1176740:intron | 25.0% |
| ! | GAAAACATTTAGTGTATGTT+TGG | + | chr8_1:8929528-8929547 | None:intergenic | 25.0% |
| !! | TAAATGTTTTCTGCGTTTAA+CGG | - | chr8_1:8929537-8929556 | Msa1176740:CDS | 25.0% |
| !!! | TTCTTTTAAAAAGATTGTGG+CGG | - | chr8_1:8929608-8929627 | Msa1176740:intron | 25.0% |
| ! | TTACTACAATATTCAACTTG+AGG | - | chr8_1:8929670-8929689 | Msa1176740:intron | 25.0% |
| ! | TCATTCATCATATATGATCA+TGG | - | chr8_1:8929696-8929715 | Msa1176740:intron | 25.0% |
| ! | GTTATTATATTCTTAGGTTC+TGG | - | chr8_1:8929739-8929758 | Msa1176740:intron | 25.0% |
| ! | TTAAATGTTCCAACATAAAC+GGG | + | chr8_1:8930040-8930059 | None:intergenic | 25.0% |
| ! | AAATATTATGAACCAGAACA+AGG | + | chr8_1:8930213-8930232 | None:intergenic | 25.0% |
| ! | CCAAAAGACTTAATAAAGAA+AGG | + | chr8_1:8930323-8930342 | None:intergenic | 25.0% |
| !! | CCTTTCTTTATTAAGTCTTT+TGG | - | chr8_1:8930320-8930339 | Msa1176740:intron | 25.0% |
| ! | ATGTTATGTTTCATGCTTTA+AGG | - | chr8_1:8930410-8930429 | Msa1176740:intron | 25.0% |
| !! | TTTCATTGGAATTTTTCATG+TGG | + | chr8_1:8930556-8930575 | None:intergenic | 25.0% |
| !!! | TAATACTAGTTTTGCTGTTT+TGG | - | chr8_1:8930740-8930759 | Msa1176740:intron | 25.0% |
| ! | ATCATATTTCTCATAAGAAC+TGG | - | chr8_1:8929124-8929143 | Msa1176740:CDS | 25.0% |
| ! | ATACTAACTAACCAAATTGA+AGG | + | chr8_1:8929224-8929243 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAAGTGTATGTT+TGG | - | chr8_1:8929252-8929271 | Msa1176740:intron | 25.0% |
| !!! | GGTGATAAGAAATTATTTTG+AGG | - | chr8_1:8929281-8929300 | Msa1176740:intron | 25.0% |
| ! | TCTGACTATAAACTTGTATT+TGG | - | chr8_1:8929312-8929331 | Msa1176740:intron | 25.0% |
| ! | GAAAACATTTAGTGTATGTT+TGG | + | chr8_1:8929528-8929547 | None:intergenic | 25.0% |
| !! | TAAATGTTTTCTGCGTTTAA+CGG | - | chr8_1:8929537-8929556 | Msa1176740:CDS | 25.0% |
| !!! | TTCTTTTAAAAAGATTGTGG+CGG | - | chr8_1:8929608-8929627 | Msa1176740:intron | 25.0% |
| ! | TTACTACAATATTCAACTTG+AGG | - | chr8_1:8929670-8929689 | Msa1176740:intron | 25.0% |
| ! | TCATTCATCATATATGATCA+TGG | - | chr8_1:8929696-8929715 | Msa1176740:intron | 25.0% |
| ! | GTTATTATATTCTTAGGTTC+TGG | - | chr8_1:8929739-8929758 | Msa1176740:intron | 25.0% |
| ! | TTAAATGTTCCAACATAAAC+GGG | + | chr8_1:8930040-8930059 | None:intergenic | 25.0% |
| ! | AAATATTATGAACCAGAACA+AGG | + | chr8_1:8930213-8930232 | None:intergenic | 25.0% |
| ! | CCAAAAGACTTAATAAAGAA+AGG | + | chr8_1:8930323-8930342 | None:intergenic | 25.0% |
| !! | CCTTTCTTTATTAAGTCTTT+TGG | - | chr8_1:8930320-8930339 | Msa1176740:intron | 25.0% |
| ! | ATGTTATGTTTCATGCTTTA+AGG | - | chr8_1:8930410-8930429 | Msa1176740:intron | 25.0% |
| !! | TTTCATTGGAATTTTTCATG+TGG | + | chr8_1:8930556-8930575 | None:intergenic | 25.0% |
| !!! | TAATACTAGTTTTGCTGTTT+TGG | - | chr8_1:8930740-8930759 | Msa1176740:intron | 25.0% |
| TATTTCTCATAAGAACTGGA+AGG | - | chr8_1:8929128-8929147 | Msa1176740:CDS | 30.0% | |
| ! | ATATGAGGCAAATATCGATT+TGG | - | chr8_1:8929155-8929174 | Msa1176740:CDS | 30.0% |
| ! | AATTGATTCTAACTGAAGCT+AGG | + | chr8_1:8929412-8929431 | None:intergenic | 30.0% |
| GCTTCAGTTAGAATCAATTA+TGG | - | chr8_1:8929413-8929432 | Msa1176740:intron | 30.0% | |
| TCAGTTAGAATCAATTATGG+AGG | - | chr8_1:8929416-8929435 | Msa1176740:intron | 30.0% | |
| !! | GGTGATTTTTGTGTTTTTTG+TGG | - | chr8_1:8929558-8929577 | Msa1176740:CDS | 30.0% |
| TGGAGTTTGAACTTTGAATT+TGG | - | chr8_1:8929578-8929597 | Msa1176740:CDS | 30.0% | |
| GTTTGAACTTTGAATTTGGT+AGG | - | chr8_1:8929582-8929601 | Msa1176740:intron | 30.0% | |
| AAAGTTTATTGTTCTGGTAG+TGG | - | chr8_1:8929909-8929928 | Msa1176740:intron | 30.0% | |
| ! | TTTTGCTGAAAGAAATATCG+TGG | - | chr8_1:8930011-8930030 | Msa1176740:intron | 30.0% |
| TCCTAAATATGCAACAGAAT+GGG | + | chr8_1:8930073-8930092 | None:intergenic | 30.0% | |
| ! | GTTATCTATTTTCCTTGTTC+TGG | - | chr8_1:8930198-8930217 | Msa1176740:intron | 30.0% |
| !!! | TTGGTAATTTTAGGATGCAA+TGG | - | chr8_1:8930339-8930358 | Msa1176740:intron | 30.0% |
| AAAGAACAAAGTTGCTAAAG+CGG | - | chr8_1:8930372-8930391 | Msa1176740:intron | 30.0% | |
| TGAAACATAACATCTATTGC+AGG | + | chr8_1:8930403-8930422 | None:intergenic | 30.0% | |
| !! | ATGTTTCATGCTTTAAGGTT+TGG | - | chr8_1:8930415-8930434 | Msa1176740:intron | 30.0% |
| TATTTCTCATAAGAACTGGA+AGG | - | chr8_1:8929128-8929147 | Msa1176740:CDS | 30.0% | |
| ! | ATATGAGGCAAATATCGATT+TGG | - | chr8_1:8929155-8929174 | Msa1176740:CDS | 30.0% |
| ! | AATTGATTCTAACTGAAGCT+AGG | + | chr8_1:8929412-8929431 | None:intergenic | 30.0% |
| GCTTCAGTTAGAATCAATTA+TGG | - | chr8_1:8929413-8929432 | Msa1176740:intron | 30.0% | |
| TCAGTTAGAATCAATTATGG+AGG | - | chr8_1:8929416-8929435 | Msa1176740:intron | 30.0% | |
| !! | GGTGATTTTTGTGTTTTTTG+TGG | - | chr8_1:8929558-8929577 | Msa1176740:CDS | 30.0% |
| TGGAGTTTGAACTTTGAATT+TGG | - | chr8_1:8929578-8929597 | Msa1176740:CDS | 30.0% | |
| GTTTGAACTTTGAATTTGGT+AGG | - | chr8_1:8929582-8929601 | Msa1176740:intron | 30.0% | |
| AAAGTTTATTGTTCTGGTAG+TGG | - | chr8_1:8929909-8929928 | Msa1176740:intron | 30.0% | |
| ! | TTTTGCTGAAAGAAATATCG+TGG | - | chr8_1:8930011-8930030 | Msa1176740:intron | 30.0% |
| TCCTAAATATGCAACAGAAT+GGG | + | chr8_1:8930073-8930092 | None:intergenic | 30.0% | |
| ! | GTTATCTATTTTCCTTGTTC+TGG | - | chr8_1:8930198-8930217 | Msa1176740:intron | 30.0% |
| !!! | TTGGTAATTTTAGGATGCAA+TGG | - | chr8_1:8930339-8930358 | Msa1176740:intron | 30.0% |
| AAAGAACAAAGTTGCTAAAG+CGG | - | chr8_1:8930372-8930391 | Msa1176740:intron | 30.0% | |
| TGAAACATAACATCTATTGC+AGG | + | chr8_1:8930403-8930422 | None:intergenic | 30.0% | |
| !! | ATGTTTCATGCTTTAAGGTT+TGG | - | chr8_1:8930415-8930434 | Msa1176740:intron | 30.0% |
| AACCAAATTGAAGGATACGA+GGG | + | chr8_1:8929215-8929234 | None:intergenic | 35.0% | |
| TAACCAAATTGAAGGATACG+AGG | + | chr8_1:8929216-8929235 | None:intergenic | 35.0% | |
| !! | TAAGTGTATGTTTGGTTCTG+CGG | - | chr8_1:8929260-8929279 | Msa1176740:intron | 35.0% |
| TCATTTACTGCTGCATGTTT+AGG | - | chr8_1:8929857-8929876 | Msa1176740:intron | 35.0% | |
| TCCCATTCTGTTGCATATTT+AGG | - | chr8_1:8930069-8930088 | Msa1176740:intron | 35.0% | |
| CTCCTAAATATGCAACAGAA+TGG | + | chr8_1:8930074-8930093 | None:intergenic | 35.0% | |
| ATAGAATTGTCATGTGGAAG+TGG | + | chr8_1:8930132-8930151 | None:intergenic | 35.0% | |
| GTTATAGGGACTGAAATCTT+GGG | - | chr8_1:8930631-8930650 | Msa1176740:intron | 35.0% | |
| ! | ACTCTGAAAATCAGCAAAAC+TGG | + | chr8_1:8930709-8930728 | None:intergenic | 35.0% |
| AAGCCAAGACAAGTTGTTAA+AGG | - | chr8_1:8930790-8930809 | Msa1176740:intron | 35.0% | |
| CTTCCTTTAACAACTTGTCT+TGG | + | chr8_1:8930796-8930815 | None:intergenic | 35.0% | |
| ATCGTCTTTCTCACAAGAAT+TGG | - | chr8_1:8930837-8930856 | Msa1176740:CDS | 35.0% | |
| AACCAAATTGAAGGATACGA+GGG | + | chr8_1:8929215-8929234 | None:intergenic | 35.0% | |
| TAACCAAATTGAAGGATACG+AGG | + | chr8_1:8929216-8929235 | None:intergenic | 35.0% | |
| !! | TAAGTGTATGTTTGGTTCTG+CGG | - | chr8_1:8929260-8929279 | Msa1176740:intron | 35.0% |
| TCATTTACTGCTGCATGTTT+AGG | - | chr8_1:8929857-8929876 | Msa1176740:intron | 35.0% | |
| TCCCATTCTGTTGCATATTT+AGG | - | chr8_1:8930069-8930088 | Msa1176740:intron | 35.0% | |
| CTCCTAAATATGCAACAGAA+TGG | + | chr8_1:8930074-8930093 | None:intergenic | 35.0% | |
| ATAGAATTGTCATGTGGAAG+TGG | + | chr8_1:8930132-8930151 | None:intergenic | 35.0% | |
| GTTATAGGGACTGAAATCTT+GGG | - | chr8_1:8930631-8930650 | Msa1176740:intron | 35.0% | |
| ! | ACTCTGAAAATCAGCAAAAC+TGG | + | chr8_1:8930709-8930728 | None:intergenic | 35.0% |
| AAGCCAAGACAAGTTGTTAA+AGG | - | chr8_1:8930790-8930809 | Msa1176740:intron | 35.0% | |
| CTTCCTTTAACAACTTGTCT+TGG | + | chr8_1:8930796-8930815 | None:intergenic | 35.0% | |
| ATCGTCTTTCTCACAAGAAT+TGG | - | chr8_1:8930837-8930856 | Msa1176740:CDS | 35.0% | |
| !! | TAGAGGGGCAAAACTGATTT+TGG | + | chr8_1:8929496-8929515 | None:intergenic | 40.0% |
| ! | TGTTTGGTTCCACTTCTAGA+GGG | + | chr8_1:8929512-8929531 | None:intergenic | 40.0% |
| ! | ATGTTTGGTTCCACTTCTAG+AGG | + | chr8_1:8929513-8929532 | None:intergenic | 40.0% |
| !! | AAAAAGATTGTGGCGGATTG+TGG | - | chr8_1:8929615-8929634 | Msa1176740:intron | 40.0% |
| !! | AGTGATTAGCCTCTGATAGT+GGG | - | chr8_1:8929782-8929801 | Msa1176740:intron | 40.0% |
| GGATTGATTGTCTTGAGTGA+TGG | - | chr8_1:8929945-8929964 | Msa1176740:intron | 40.0% | |
| TGATTGTCTTGAGTGATGGT+TGG | - | chr8_1:8929949-8929968 | Msa1176740:intron | 40.0% | |
| TGCTGAAAGAAATATCGTGG+AGG | - | chr8_1:8930014-8930033 | Msa1176740:intron | 40.0% | |
| CCTTGGAAATTTAGCAGCAT+TGG | + | chr8_1:8930510-8930529 | None:intergenic | 40.0% | |
| CCAATGCTGCTAAATTTCCA+AGG | - | chr8_1:8930507-8930526 | Msa1176740:intron | 40.0% | |
| CAGTTGGATTACAACTCATG+TGG | + | chr8_1:8930533-8930552 | None:intergenic | 40.0% | |
| ! | GGAATTTTTCATGTGGCAGT+TGG | + | chr8_1:8930549-8930568 | None:intergenic | 40.0% |
| ACAGTGCGTAGCAATTTCAT+TGG | + | chr8_1:8930570-8930589 | None:intergenic | 40.0% | |
| GGTTATAGGGACTGAAATCT+TGG | - | chr8_1:8930630-8930649 | Msa1176740:intron | 40.0% | |
| ACCACTTTGACATTCGTAAG+AGG | - | chr8_1:8930654-8930673 | Msa1176740:intron | 40.0% | |
| AGGAAGCCAAGAATCTTTCA+TGG | - | chr8_1:8930810-8930829 | Msa1176740:CDS | 40.0% | |
| GGAAGCCAAGAATCTTTCAT+GGG | - | chr8_1:8930811-8930830 | Msa1176740:CDS | 40.0% | |
| ATCCTCCCATGAAAGATTCT+TGG | + | chr8_1:8930819-8930838 | None:intergenic | 40.0% | |
| !! | TAGAGGGGCAAAACTGATTT+TGG | + | chr8_1:8929496-8929515 | None:intergenic | 40.0% |
| ! | TGTTTGGTTCCACTTCTAGA+GGG | + | chr8_1:8929512-8929531 | None:intergenic | 40.0% |
| ! | ATGTTTGGTTCCACTTCTAG+AGG | + | chr8_1:8929513-8929532 | None:intergenic | 40.0% |
| !! | AAAAAGATTGTGGCGGATTG+TGG | - | chr8_1:8929615-8929634 | Msa1176740:intron | 40.0% |
| !! | AGTGATTAGCCTCTGATAGT+GGG | - | chr8_1:8929782-8929801 | Msa1176740:intron | 40.0% |
| GGATTGATTGTCTTGAGTGA+TGG | - | chr8_1:8929945-8929964 | Msa1176740:intron | 40.0% | |
| TGATTGTCTTGAGTGATGGT+TGG | - | chr8_1:8929949-8929968 | Msa1176740:intron | 40.0% | |
| TGCTGAAAGAAATATCGTGG+AGG | - | chr8_1:8930014-8930033 | Msa1176740:intron | 40.0% | |
| CCTTGGAAATTTAGCAGCAT+TGG | + | chr8_1:8930510-8930529 | None:intergenic | 40.0% | |
| CCAATGCTGCTAAATTTCCA+AGG | - | chr8_1:8930507-8930526 | Msa1176740:intron | 40.0% | |
| CAGTTGGATTACAACTCATG+TGG | + | chr8_1:8930533-8930552 | None:intergenic | 40.0% | |
| ! | GGAATTTTTCATGTGGCAGT+TGG | + | chr8_1:8930549-8930568 | None:intergenic | 40.0% |
| ACAGTGCGTAGCAATTTCAT+TGG | + | chr8_1:8930570-8930589 | None:intergenic | 40.0% | |
| GGTTATAGGGACTGAAATCT+TGG | - | chr8_1:8930630-8930649 | Msa1176740:intron | 40.0% | |
| ACCACTTTGACATTCGTAAG+AGG | - | chr8_1:8930654-8930673 | Msa1176740:intron | 40.0% | |
| AGGAAGCCAAGAATCTTTCA+TGG | - | chr8_1:8930810-8930829 | Msa1176740:CDS | 40.0% | |
| GGAAGCCAAGAATCTTTCAT+GGG | - | chr8_1:8930811-8930830 | Msa1176740:CDS | 40.0% | |
| ATCCTCCCATGAAAGATTCT+TGG | + | chr8_1:8930819-8930838 | None:intergenic | 40.0% | |
| AGCGAAGAAACTTCAATGCG+AGG | - | chr8_1:8929101-8929120 | Msa1176740:CDS | 45.0% | |
| GAACTGGAAGGTTCGATATG+AGG | - | chr8_1:8929140-8929159 | Msa1176740:CDS | 45.0% | |
| GACCCTCGTATCCTTCAATT+TGG | - | chr8_1:8929210-8929229 | Msa1176740:intron | 45.0% | |
| !! | AGGGGCAAAACTGATTTTGG+AGG | + | chr8_1:8929493-8929512 | None:intergenic | 45.0% |
| ! | GTTTGGTTCCACTTCTAGAG+GGG | + | chr8_1:8929511-8929530 | None:intergenic | 45.0% |
| !! | GAGTGATTAGCCTCTGATAG+TGG | - | chr8_1:8929781-8929800 | Msa1176740:intron | 45.0% |
| TTGCAAGAACCCACTATCAG+AGG | + | chr8_1:8929794-8929813 | None:intergenic | 45.0% | |
| !! | GGTAGTGGATGACATTGTTG+AGG | - | chr8_1:8929924-8929943 | Msa1176740:intron | 45.0% |
| GTCATGTGGAAGTGGAAAAC+AGG | + | chr8_1:8930124-8930143 | None:intergenic | 45.0% | |
| GAACAAAGTTGCTAAAGCGG+TGG | - | chr8_1:8930375-8930394 | Msa1176740:intron | 45.0% | |
| GATTACAACTCATGTGGCCT+TGG | + | chr8_1:8930527-8930546 | None:intergenic | 45.0% | |
| !! | TGCGCCTGTTTCTGGTTATA+GGG | - | chr8_1:8930617-8930636 | Msa1176740:intron | 45.0% |
| CAGTCCCTATAACCAGAAAC+AGG | + | chr8_1:8930624-8930643 | None:intergenic | 45.0% | |
| GCCTCTTACGAATGTCAAAG+TGG | + | chr8_1:8930658-8930677 | None:intergenic | 45.0% | |
| TTTGACATTCGTAAGAGGCC+AGG | - | chr8_1:8930659-8930678 | Msa1176740:intron | 45.0% | |
| TGTGCTTACAACCTGAAACC+TGG | + | chr8_1:8930680-8930699 | None:intergenic | 45.0% | |
| AGCCAAGAATCTTTCATGGG+AGG | - | chr8_1:8930814-8930833 | Msa1176740:CDS | 45.0% | |
| AGCGAAGAAACTTCAATGCG+AGG | - | chr8_1:8929101-8929120 | Msa1176740:CDS | 45.0% | |
| GAACTGGAAGGTTCGATATG+AGG | - | chr8_1:8929140-8929159 | Msa1176740:CDS | 45.0% | |
| GACCCTCGTATCCTTCAATT+TGG | - | chr8_1:8929210-8929229 | Msa1176740:intron | 45.0% | |
| !! | AGGGGCAAAACTGATTTTGG+AGG | + | chr8_1:8929493-8929512 | None:intergenic | 45.0% |
| ! | GTTTGGTTCCACTTCTAGAG+GGG | + | chr8_1:8929511-8929530 | None:intergenic | 45.0% |
| !! | GAGTGATTAGCCTCTGATAG+TGG | - | chr8_1:8929781-8929800 | Msa1176740:intron | 45.0% |
| TTGCAAGAACCCACTATCAG+AGG | + | chr8_1:8929794-8929813 | None:intergenic | 45.0% | |
| !! | GGTAGTGGATGACATTGTTG+AGG | - | chr8_1:8929924-8929943 | Msa1176740:intron | 45.0% |
| GTCATGTGGAAGTGGAAAAC+AGG | + | chr8_1:8930124-8930143 | None:intergenic | 45.0% | |
| GAACAAAGTTGCTAAAGCGG+TGG | - | chr8_1:8930375-8930394 | Msa1176740:intron | 45.0% | |
| GATTACAACTCATGTGGCCT+TGG | + | chr8_1:8930527-8930546 | None:intergenic | 45.0% | |
| !! | TGCGCCTGTTTCTGGTTATA+GGG | - | chr8_1:8930617-8930636 | Msa1176740:intron | 45.0% |
| CAGTCCCTATAACCAGAAAC+AGG | + | chr8_1:8930624-8930643 | None:intergenic | 45.0% | |
| GCCTCTTACGAATGTCAAAG+TGG | + | chr8_1:8930658-8930677 | None:intergenic | 45.0% | |
| TTTGACATTCGTAAGAGGCC+AGG | - | chr8_1:8930659-8930678 | Msa1176740:intron | 45.0% | |
| TGTGCTTACAACCTGAAACC+TGG | + | chr8_1:8930680-8930699 | None:intergenic | 45.0% | |
| AGCCAAGAATCTTTCATGGG+AGG | - | chr8_1:8930814-8930833 | Msa1176740:CDS | 45.0% | |
| TCACTCCATCACCGATCCTA+AGG | - | chr8_1:8929188-8929207 | Msa1176740:CDS | 50.0% | |
| GATACGAGGGTCCTTAGGAT+CGG | + | chr8_1:8929202-8929221 | None:intergenic | 50.0% | |
| TGAAGGATACGAGGGTCCTT+AGG | + | chr8_1:8929207-8929226 | None:intergenic | 50.0% | |
| !! | CAGTTTTGCCCCTCTAGAAG+TGG | - | chr8_1:8929500-8929519 | Msa1176740:intron | 50.0% |
| !! | AAGATTGTGGCGGATTGTGG+CGG | - | chr8_1:8929618-8929637 | Msa1176740:intron | 50.0% |
| TGCTACGCACTGTGTCTGTT+TGG | - | chr8_1:8930577-8930596 | Msa1176740:intron | 50.0% | |
| TCTGTTTGGTACTCCAGACC+TGG | - | chr8_1:8930591-8930610 | Msa1176740:intron | 50.0% | |
| CTGTTTGGTACTCCAGACCT+GGG | - | chr8_1:8930592-8930611 | Msa1176740:intron | 50.0% | |
| !! | GTGCGCCTGTTTCTGGTTAT+AGG | - | chr8_1:8930616-8930635 | Msa1176740:intron | 50.0% |
| TTCGTAAGAGGCCAGGTTTC+AGG | - | chr8_1:8930666-8930685 | Msa1176740:intron | 50.0% | |
| TCGCAGGCAGGTGTATAAGA+AGG | + | chr8_1:8930768-8930787 | None:intergenic | 50.0% | |
| TTCTTATACACCTGCCTGCG+AGG | - | chr8_1:8930767-8930786 | Msa1176740:intron | 50.0% | |
| TCACTCCATCACCGATCCTA+AGG | - | chr8_1:8929188-8929207 | Msa1176740:CDS | 50.0% | |
| GATACGAGGGTCCTTAGGAT+CGG | + | chr8_1:8929202-8929221 | None:intergenic | 50.0% | |
| TGAAGGATACGAGGGTCCTT+AGG | + | chr8_1:8929207-8929226 | None:intergenic | 50.0% | |
| !! | CAGTTTTGCCCCTCTAGAAG+TGG | - | chr8_1:8929500-8929519 | Msa1176740:intron | 50.0% |
| !! | AAGATTGTGGCGGATTGTGG+CGG | - | chr8_1:8929618-8929637 | Msa1176740:intron | 50.0% |
| TGCTACGCACTGTGTCTGTT+TGG | - | chr8_1:8930577-8930596 | Msa1176740:intron | 50.0% | |
| TCTGTTTGGTACTCCAGACC+TGG | - | chr8_1:8930591-8930610 | Msa1176740:intron | 50.0% | |
| CTGTTTGGTACTCCAGACCT+GGG | - | chr8_1:8930592-8930611 | Msa1176740:intron | 50.0% | |
| !! | GTGCGCCTGTTTCTGGTTAT+AGG | - | chr8_1:8930616-8930635 | Msa1176740:intron | 50.0% |
| TTCGTAAGAGGCCAGGTTTC+AGG | - | chr8_1:8930666-8930685 | Msa1176740:intron | 50.0% | |
| TCGCAGGCAGGTGTATAAGA+AGG | + | chr8_1:8930768-8930787 | None:intergenic | 50.0% | |
| TTCTTATACACCTGCCTGCG+AGG | - | chr8_1:8930767-8930786 | Msa1176740:intron | 50.0% | |
| AGGGTCCTTAGGATCGGTGA+TGG | + | chr8_1:8929196-8929215 | None:intergenic | 55.0% | |
| TCGTGGAGGCCCGTTTATGT+TGG | - | chr8_1:8930028-8930047 | Msa1176740:intron | 55.0% | |
| ACTTGTCTTGGCTTCCTCGC+AGG | + | chr8_1:8930784-8930803 | None:intergenic | 55.0% | |
| AGGGTCCTTAGGATCGGTGA+TGG | + | chr8_1:8929196-8929215 | None:intergenic | 55.0% | |
| TCGTGGAGGCCCGTTTATGT+TGG | - | chr8_1:8930028-8930047 | Msa1176740:intron | 55.0% | |
| ACTTGTCTTGGCTTCCTCGC+AGG | + | chr8_1:8930784-8930803 | None:intergenic | 55.0% | |
| AACAGGCGCACACCCAGGTC+TGG | + | chr8_1:8930607-8930626 | None:intergenic | 65.0% | |
| CCAGAAACAGGCGCACACCC+AGG | + | chr8_1:8930612-8930631 | None:intergenic | 65.0% | |
| CCTGGGTGTGCGCCTGTTTC+TGG | - | chr8_1:8930609-8930628 | Msa1176740:intron | 65.0% | |
| GTCTTGGCTTCCTCGCAGGC+AGG | + | chr8_1:8930780-8930799 | None:intergenic | 65.0% | |
| AACAGGCGCACACCCAGGTC+TGG | + | chr8_1:8930607-8930626 | None:intergenic | 65.0% | |
| CCAGAAACAGGCGCACACCC+AGG | + | chr8_1:8930612-8930631 | None:intergenic | 65.0% | |
| CCTGGGTGTGCGCCTGTTTC+TGG | - | chr8_1:8930609-8930628 | Msa1176740:intron | 65.0% | |
| GTCTTGGCTTCCTCGCAGGC+AGG | + | chr8_1:8930780-8930799 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 8929078 | 8930873 | 8929078 | ID=Msa1176740;Name=Msa1176740 |
| chr8_1 | mRNA | 8929078 | 8930873 | 8929078 | ID=Msa1176740-mRNA-1;Parent=Msa1176740;Name=Msa1176740-mRNA-1;_AED=0.93;_eAED=0.93;_QI=0|0|0|0.33|1|1|3|0|99 |
| chr8_1 | exon | 8930802 | 8930873 | 8930802 | ID=Msa1176740-mRNA-1:exon:3035;Parent=Msa1176740-mRNA-1 |
| chr8_1 | exon | 8929520 | 8929599 | 8929520 | ID=Msa1176740-mRNA-1:exon:3034;Parent=Msa1176740-mRNA-1 |
| chr8_1 | exon | 8929078 | 8929225 | 8929078 | ID=Msa1176740-mRNA-1:exon:3033;Parent=Msa1176740-mRNA-1 |
| chr8_1 | CDS | 8930802 | 8930873 | 8930802 | ID=Msa1176740-mRNA-1:cds;Parent=Msa1176740-mRNA-1 |
| chr8_1 | CDS | 8929520 | 8929599 | 8929520 | ID=Msa1176740-mRNA-1:cds;Parent=Msa1176740-mRNA-1 |
| chr8_1 | CDS | 8929078 | 8929225 | 8929078 | ID=Msa1176740-mRNA-1:cds;Parent=Msa1176740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
