AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176730 MtrunA17_Chr8g0345051 81.416 113 21 0 46 158 151 263 1.97e-57 186
Msa1176730 MtrunA17_Chr1g0199191 83.186 113 19 0 46 158 150 262 1.03e-55 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176730 AT2G35630.2 73.148 108 29 0 51 158 45 152 3.46e-47 166
Msa1176730 AT2G35630.1 73.148 108 29 0 51 158 155 262 3.90e-47 166

Find 55 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGCCGTCGATGCATTTC+TGG 0.210666 8_1:-8928327 Msa1176730:intron
CCTCATGCTGCTAGTGAATT+TGG 0.240578 8_1:-8927453 Msa1176730:CDS
CAAAGCCAAGCCGCAGAATA+AGG 0.272720 8_1:-8927124 Msa1176730:intron
GATCTTCGGGGCAAGTTGTT+TGG 0.275070 8_1:-8928446 Msa1176730:five_prime_UTR
TGAATTTGAATTTGATCTTC+GGG 0.280997 8_1:-8928459 None:intergenic
ATGTCCGTGCATCCTCTAAA+AGG 0.298552 8_1:-8927362 Msa1176730:CDS
TCAGATATAGTTTCCTGTTC+AGG 0.305077 8_1:+8926438 None:intergenic
AGCCCCTCACGAGCGGAAAT+TGG 0.333468 8_1:-8926384 Msa1176730:intron
TAGAGGATGCACGGACATTT+TGG 0.334892 8_1:+8927367 None:intergenic
GCAGAAGTTGTAAATGTTAC+AGG 0.335661 8_1:-8927152 Msa1176730:CDS
GAGGGGCTCGGCTTCTCAGC+AGG 0.346933 8_1:+8926399 None:intergenic
ATCTTCGGGGCAAGTTGTTT+GGG 0.351272 8_1:-8928445 Msa1176730:five_prime_UTR
TTGAATTTGAATTTGATCTT+CGG 0.352424 8_1:-8928460 None:intergenic
TCTTGGTGATCAAAGAGTTC+TGG 0.372500 8_1:+8927390 None:intergenic
AGGCTGATATCAAGAAATTC+AGG 0.397026 8_1:-8925945 Msa1176730:three_prime_UTR
TCCTTCTCCGGTAAAGACTT+TGG 0.415499 8_1:+8925976 None:intergenic
TGAAACTCCAAAGTCTTTAC+CGG 0.427991 8_1:-8925983 Msa1176730:three_prime_UTR
GCCTCCAACGGTTCCTTCTC+CGG 0.437782 8_1:+8925964 None:intergenic
ATATCTGAGGTTGTGGGAGC+TGG 0.442783 8_1:-8926423 Msa1176730:CDS
ATCTACCTTATTCTGCGGCT+TGG 0.461561 8_1:+8927119 None:intergenic
GAAAGACAAGGAACCTGAAC+AGG 0.467000 8_1:-8926451 Msa1176730:CDS
GGAAACTATATCTGAGGTTG+TGG 0.474145 8_1:-8926430 Msa1176730:CDS
ACGAGTTGTGCCAAGTATAA+CGG 0.477587 8_1:-8926023 Msa1176730:CDS
ATTTCCGCTCGTGAGGGGCT+CGG 0.485622 8_1:+8926387 None:intergenic
ACCGGAGAAGGAACCGTTGG+AGG 0.491893 8_1:-8925965 Msa1176730:three_prime_UTR
GTTGTGGCTAAATGTCTAAC+GGG 0.514299 8_1:-8928404 Msa1176730:exon
TCCAAAGTCTTTACCGGAGA+AGG 0.524901 8_1:-8925977 Msa1176730:three_prime_UTR
CAGATATCTACCTTATTCTG+CGG 0.539484 8_1:+8927114 None:intergenic
TAATCTGCTCCTTTAGAGAC+TGG 0.540159 8_1:+8926045 None:intergenic
TTTGCTCTTTGTGGAATTGG+AGG 0.540539 8_1:-8928345 Msa1176730:CDS
AGTACACAATCCGTTATACT+TGG 0.543510 8_1:+8926013 None:intergenic
GTTACCAATTTCCGCTCGTG+AGG 0.546215 8_1:+8926380 None:intergenic
TCCGTAGTACCAGTCTCTAA+AGG 0.549308 8_1:-8926054 Msa1176730:intron
TTACCAATTTCCGCTCGTGA+GGG 0.551902 8_1:+8926381 None:intergenic
AGGGGCTCGGCTTCTCAGCA+GGG 0.555868 8_1:+8926400 None:intergenic
GAAACTATATCTGAGGTTGT+GGG 0.561907 8_1:-8926429 Msa1176730:CDS
AAGTGGCTCTCATACGTATG+AGG 0.563131 8_1:-8926162 Msa1176730:intron
TTTACCGGAGAAGGAACCGT+TGG 0.569658 8_1:-8925968 Msa1176730:three_prime_UTR
AATATGCTGCTGAGCTGAAG+CGG 0.570805 8_1:-8926202 Msa1176730:CDS
GGAAGTTTGTGATGCAGTTG+TGG 0.579720 8_1:-8928420 Msa1176730:five_prime_UTR
TCGGGGCAAGTTGTTTGGGA+AGG 0.580660 8_1:-8928441 Msa1176730:five_prime_UTR
TACCAATTTCCGCTCGTGAG+GGG 0.587121 8_1:+8926382 None:intergenic
AAGACTTTGGAGTTTCAGCT+AGG 0.590481 8_1:+8925989 None:intergenic
GAATTTGAATTTGATCTTCG+GGG 0.596251 8_1:-8928458 Msa1176730:five_prime_UTR
TCTAACGGGAAGGCGAAAGA+CGG 0.596508 8_1:-8928390 Msa1176730:CDS
AGTTGTGGCTAAATGTCTAA+CGG 0.597240 8_1:-8928405 Msa1176730:exon
TTCTTGATATCAGCCTCCAA+CGG 0.604556 8_1:+8925952 None:intergenic
TGGCTAAATGTCTAACGGGA+AGG 0.614989 8_1:-8928400 Msa1176730:exon
TATGAGAGCCACTTCGTAGG+AGG 0.630310 8_1:+8926171 None:intergenic
TAGTACCAGAAATGCATCGA+CGG 0.643334 8_1:+8928322 None:intergenic
TGAGAAAATGAGAGACACAA+TGG 0.645368 8_1:-8927283 Msa1176730:intron
TGAACAGGAAACTATATCTG+AGG 0.664652 8_1:-8926436 Msa1176730:CDS
CCAAATTCACTAGCAGCATG+AGG 0.668289 8_1:+8927453 None:intergenic
TCTACTAACCTCCTACGAAG+TGG 0.677424 8_1:-8926179 Msa1176730:CDS
ACGTATGAGAGCCACTTCGT+AGG 0.678193 8_1:+8926168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAATATTTTGACATTTA+CGG - chr8_1:8926297-8926316 Msa1176730:intron 15.0%
!! AAAAAAAATTGTCAATTTGA+TGG - chr8_1:8927566-8927585 Msa1176730:intron 15.0%
!! AAATATTCTTCAAAAGAAAA+TGG - chr8_1:8927611-8927630 Msa1176730:intron 15.0%
!!! ATTTTTCTATTTTATTTGGA+CGG + chr8_1:8928170-8928189 None:intergenic 15.0%
!!! GCATATTTTTCTATTTTATT+TGG + chr8_1:8928174-8928193 None:intergenic 15.0%
!!! TAAGTTTTTATGAAAGTTTA+TGG - chr8_1:8928250-8928269 Msa1176730:intron 15.0%
!! AAATATTATGAACCAAAACA+AGG + chr8_1:8926717-8926736 None:intergenic 20.0%
!!! GGTTCATAATATTTTTGATA+TGG - chr8_1:8926723-8926742 Msa1176730:intron 20.0%
!!! AGCATTTTCAAAATTCTTTT+CGG + chr8_1:8926978-8926997 None:intergenic 20.0%
!! GATACTTTACAATTTACATT+AGG + chr8_1:8927177-8927196 None:intergenic 20.0%
!! TCATATCTTAAAAAGCAAAA+TGG + chr8_1:8927440-8927459 None:intergenic 20.0%
!!! TTTTGAATAGTTTTGTTCAT+TGG + chr8_1:8927664-8927683 None:intergenic 20.0%
!! TAATTGTAAATCATTGTATG+AGG - chr8_1:8927871-8927890 Msa1176730:intron 20.0%
!! AATTGTAAATCATTGTATGA+GGG - chr8_1:8927872-8927891 Msa1176730:intron 20.0%
!!! TTTATCTTCTATTTAGTTTG+TGG - chr8_1:8928066-8928085 Msa1176730:intron 20.0%
!! TTGTTTGATGTATATACATT+TGG - chr8_1:8928089-8928108 Msa1176730:intron 20.0%
!! AGTTAAAAAAGAAAAAGACA+AGG + chr8_1:8928123-8928142 None:intergenic 20.0%
! TCATTCATCATTTATGATCA+TGG - chr8_1:8926152-8926171 Msa1176730:intron 25.0%
! ATATGATTCAATTGAGTGAT+TGG - chr8_1:8926221-8926240 Msa1176730:CDS 25.0%
! AAAGAATTTCCATATCAGTT+GGG + chr8_1:8926636-8926655 None:intergenic 25.0%
! AAAAGAATTTCCATATCAGT+TGG + chr8_1:8926637-8926656 None:intergenic 25.0%
! AAATAGAAAACACTAGAACA+GGG + chr8_1:8926693-8926712 None:intergenic 25.0%
! AAAATAGAAAACACTAGAAC+AGG + chr8_1:8926694-8926713 None:intergenic 25.0%
!!! GTTTTCTATTTTCCTTGTTT+TGG - chr8_1:8926702-8926721 Msa1176730:intron 25.0%
! ATGTTATGTTTCAAGCTTTA+AGG - chr8_1:8926839-8926858 Msa1176730:intron 25.0%
!! GCATTTTCAAAATTCTTTTC+GGG + chr8_1:8926977-8926996 None:intergenic 25.0%
! ATAACAAATCAATCACTAAG+AGG + chr8_1:8927146-8927165 None:intergenic 25.0%
! ACTTTACAATTTACATTAGG+AGG + chr8_1:8927174-8927193 None:intergenic 25.0%
! GGAAAGGGATAAAATAAAAA+AGG + chr8_1:8927419-8927438 None:intergenic 25.0%
! CTTAAAAAGCAAAATGGAAA+GGG + chr8_1:8927434-8927453 None:intergenic 25.0%
! TCTTAAAAAGCAAAATGGAA+AGG + chr8_1:8927435-8927454 None:intergenic 25.0%
!! AAAAAGAGTTTCAGTTTTCA+GGG + chr8_1:8927800-8927819 None:intergenic 25.0%
!! TAAAAAGAGTTTCAGTTTTC+AGG + chr8_1:8927801-8927820 None:intergenic 25.0%
! TCTCAGATCTAAAAAAATGT+TGG + chr8_1:8927920-8927939 None:intergenic 25.0%
!!! TAAATCAAAAGCATTGCTAA+AGG + chr8_1:8928278-8928297 None:intergenic 25.0%
!! CCTCAAGTTGAATATTGTAA+TGG + chr8_1:8926129-8926148 None:intergenic 30.0%
CCATTACAATATTCAACTTG+AGG - chr8_1:8926126-8926145 Msa1176730:intron 30.0%
TTGTAAACTGATGTGAGTTT+AGG - chr8_1:8926361-8926380 Msa1176730:intron 30.0%
AAGAATTTCCATATCAGTTG+GGG + chr8_1:8926635-8926654 None:intergenic 30.0%
TGAAACATAACATCTATTGC+AGG + chr8_1:8926832-8926851 None:intergenic 30.0%
!! ATGTTTCAAGCTTTAAGGTT+TGG - chr8_1:8926844-8926863 Msa1176730:intron 30.0%
TCTTTCTGTAGAAAAAAGAG+TGG - chr8_1:8927211-8927230 Msa1176730:intron 30.0%
CTTTCTGTAGAAAAAAGAGT+GGG - chr8_1:8927212-8927231 Msa1176730:intron 30.0%
ATAAAAAAGGATCTTCTCGA+TGG + chr8_1:8927311-8927330 None:intergenic 30.0%
! AAAAAGTATAAGAATGCTCG+TGG + chr8_1:8927366-8927385 None:intergenic 30.0%
! AAAAAAGGCGTACATAATGA+AGG + chr8_1:8927404-8927423 None:intergenic 30.0%
TAGCATTAAAGATCGTCTAA+GGG + chr8_1:8927514-8927533 None:intergenic 30.0%
! TTTTAGTATCTACCCTAGAT+AGG + chr8_1:8927594-8927613 None:intergenic 30.0%
CAAAAATTATGCCGGAAATT+TGG + chr8_1:8927745-8927764 None:intergenic 30.0%
TCAGGGAGTAAGTTAAAATT+TGG + chr8_1:8927783-8927802 None:intergenic 30.0%
! TCTTTTTATCAAGCCAGATA+GGG - chr8_1:8927813-8927832 Msa1176730:intron 30.0%
!!! GAATCTTTTGCTTGTTATGT+TGG - chr8_1:8927845-8927864 Msa1176730:intron 30.0%
TGTTGGAATATCTATCAAGA+TGG + chr8_1:8927903-8927922 None:intergenic 30.0%
! TTTTAGATCTGAGAAAGACA+AGG - chr8_1:8927926-8927945 Msa1176730:intron 30.0%
AGTTGTGGCTAAATGTCTAA+CGG - chr8_1:8925984-8926003 Msa1176730:three_prime_UTR 35.0%
! GTTTTTGCTCTTTGTGGAAT+TGG - chr8_1:8926041-8926060 Msa1176730:CDS 35.0%
TCAGAGCGCAATATGAAATA+TGG + chr8_1:8926280-8926299 None:intergenic 35.0%
!!! GTCTCACTTTTTCGATTTCT+AGG + chr8_1:8926403-8926422 None:intergenic 35.0%
GGTTTGATTGTCCTGATTAA+TGG - chr8_1:8926444-8926463 Msa1176730:CDS 35.0%
GATTGTCCTGATTAATGGTT+TGG - chr8_1:8926449-8926468 Msa1176730:CDS 35.0%
TCTGTGATCCAACATAAACA+GGG + chr8_1:8926538-8926557 None:intergenic 35.0%
TTCTGTGATCCAACATAAAC+AGG + chr8_1:8926539-8926558 None:intergenic 35.0%
CTTTCTGTTGCATATTTACG+AGG - chr8_1:8926569-8926588 Msa1176730:intron 35.0%
CTTTAGCAACTTTGTTCATG+CGG + chr8_1:8926801-8926820 None:intergenic 35.0%
CATGAACAAAGTTGCTAAAG+CGG - chr8_1:8926801-8926820 Msa1176730:intron 35.0%
! TTCAAAAGTCAGCCTTTTAG+AGG + chr8_1:8927042-8927061 None:intergenic 35.0%
!!! TGACTTTTGAACTTTTTCGC+TGG - chr8_1:8927051-8927070 Msa1176730:intron 35.0%
!!! GACTTTTGAACTTTTTCGCT+GGG - chr8_1:8927052-8927071 Msa1176730:intron 35.0%
TGAGAAAATGAGAGACACAA+TGG - chr8_1:8927106-8927125 Msa1176730:intron 35.0%
CAGAAAGAAAGAGAGAGAAT+TGG + chr8_1:8927199-8927218 None:intergenic 35.0%
GCAGAAGTTGTAAATGTTAC+AGG - chr8_1:8927237-8927256 Msa1176730:intron 35.0%
CAGATATCTACCTTATTCTG+CGG + chr8_1:8927278-8927297 None:intergenic 35.0%
!!! AGATCCTTTTTTATGCCTAC+CGG - chr8_1:8927317-8927336 Msa1176730:CDS 35.0%
TCAGATGTCATAATGCTGTT+TGG - chr8_1:8927487-8927506 Msa1176730:CDS 35.0%
CTAGCATTAAAGATCGTCTA+AGG + chr8_1:8927515-8927534 None:intergenic 35.0%
AATTTGATGGAGCCTATCTA+GGG - chr8_1:8927579-8927598 Msa1176730:intron 35.0%
!!! TAGTTTTGTTCATTGGAAGC+AGG + chr8_1:8927657-8927676 None:intergenic 35.0%
! ATTTCCGGCATAATTTTTGC+TGG - chr8_1:8927746-8927765 Msa1176730:intron 35.0%
ACAACCAGCAAAAATTATGC+CGG + chr8_1:8927753-8927772 None:intergenic 35.0%
! CTCTTTTTATCAAGCCAGAT+AGG - chr8_1:8927812-8927831 Msa1176730:intron 35.0%
! CTTTTTATCAAGCCAGATAG+GGG - chr8_1:8927814-8927833 Msa1176730:intron 35.0%
! ATTCAAGTTAAACCCCTATC+TGG + chr8_1:8927829-8927848 None:intergenic 35.0%
TCAGATATAGTTTCCTGTTC+AGG + chr8_1:8927954-8927973 None:intergenic 35.0%
TGAACAGGAAACTATATCTG+AGG - chr8_1:8927953-8927972 Msa1176730:intron 35.0%
! GAAACTATATCTGAGGTTGT+GGG - chr8_1:8927960-8927979 Msa1176730:intron 35.0%
GAAACGATTTATTTGACCGA+GGG + chr8_1:8928036-8928055 None:intergenic 35.0%
AGAAACGATTTATTTGACCG+AGG + chr8_1:8928037-8928056 None:intergenic 35.0%
AGTACACAATCCGTTATACT+TGG + chr8_1:8928379-8928398 None:intergenic 35.0%
TGAAACTCCAAAGTCTTTAC+CGG - chr8_1:8928406-8928425 Msa1176730:exon 35.0%
AGGCTGATATCAAGAAATTC+AGG - chr8_1:8928444-8928463 Msa1176730:five_prime_UTR 35.0%
GTTGTGGCTAAATGTCTAAC+GGG - chr8_1:8925985-8926004 Msa1176730:three_prime_UTR 40.0%
!! TGCAGTGTTTTTGCTCTTTG+TGG - chr8_1:8926035-8926054 Msa1176730:CDS 40.0%
TTTGCTCTTTGTGGAATTGG+AGG - chr8_1:8926044-8926063 Msa1176730:CDS 40.0%
TAGTACCAGAAATGCATCGA+CGG + chr8_1:8926070-8926089 None:intergenic 40.0%
TCGAAAAAGTGAGACAGTAG+TGG - chr8_1:8926408-8926427 Msa1176730:CDS 40.0%
! AAAAGTGAGACAGTAGTGGA+TGG - chr8_1:8926412-8926431 Msa1176730:CDS 40.0%
CACATGCCAAACCATTAATC+AGG + chr8_1:8926458-8926477 None:intergenic 40.0%
TTGTAGAGCCCTGTTTATGT+TGG - chr8_1:8926527-8926546 Msa1176730:intron 40.0%
! TCTTGGTGATCAAAGAGTTC+TGG + chr8_1:8927002-8927021 None:intergenic 40.0%
GACACAATGGTAAGCTTATC+TGG - chr8_1:8927119-8927138 Msa1176730:intron 40.0%
ATGTCCGGTAGGCATAAAAA+AGG + chr8_1:8927324-8927343 None:intergenic 40.0%
! TCGTGGATTGCAACACATTA+CGG + chr8_1:8927349-8927368 None:intergenic 40.0%
CATCTGAATGCACAAATCTC+TGG + chr8_1:8927474-8927493 None:intergenic 40.0%
CAATTTGATGGAGCCTATCT+AGG - chr8_1:8927578-8927597 Msa1176730:intron 40.0%
TTGTTCATTGGAAGCAGGTA+GGG + chr8_1:8927652-8927671 None:intergenic 40.0%
TTTGTTCATTGGAAGCAGGT+AGG + chr8_1:8927653-8927672 None:intergenic 40.0%
! TTTTGCTCGAGCCAAATTTC+CGG - chr8_1:8927731-8927750 Msa1176730:intron 40.0%
! GGAAACTATATCTGAGGTTG+TGG - chr8_1:8927959-8927978 Msa1176730:intron 40.0%
! TCCTTTAGAGACTGGTACTA+CGG + chr8_1:8928339-8928358 None:intergenic 40.0%
! TAATCTGCTCCTTTAGAGAC+TGG + chr8_1:8928347-8928366 None:intergenic 40.0%
ACGAGTTGTGCCAAGTATAA+CGG - chr8_1:8928366-8928385 Msa1176730:CDS 40.0%
!! AAGACTTTGGAGTTTCAGCT+AGG + chr8_1:8928403-8928422 None:intergenic 40.0%
TTCTTGATATCAGCCTCCAA+CGG + chr8_1:8928440-8928459 None:intergenic 40.0%
ATCTTCGGGGCAAGTTGTTT+GGG - chr8_1:8925944-8925963 Msa1176730:three_prime_UTR 45.0%
GGAAGTTTGTGATGCAGTTG+TGG - chr8_1:8925969-8925988 Msa1176730:three_prime_UTR 45.0%
TGGCTAAATGTCTAACGGGA+AGG - chr8_1:8925989-8926008 Msa1176730:exon 45.0%
!! TCAATTGAGTGATTGGCCTC+TGG - chr8_1:8926228-8926247 Msa1176730:CDS 45.0%
!! AGTAGTGGATGGCATTGTTG+AGG - chr8_1:8926423-8926442 Msa1176730:CDS 45.0%
TTCCATTGCCCCAACTGATA+TGG - chr8_1:8926624-8926643 Msa1176730:intron 45.0%
TTCCATATCAGTTGGGGCAA+TGG + chr8_1:8926629-8926648 None:intergenic 45.0%
GAACAAAGTTGCTAAAGCGG+TGG - chr8_1:8926804-8926823 Msa1176730:intron 45.0%
CCAAATTCACTAGCAGCATG+AGG + chr8_1:8926939-8926958 None:intergenic 45.0%
CCTCATGCTGCTAGTGAATT+TGG - chr8_1:8926936-8926955 Msa1176730:intron 45.0%
!! ATGCACGGACATTTTGGTCT+TGG + chr8_1:8927019-8927038 None:intergenic 45.0%
! TAGAGGATGCACGGACATTT+TGG + chr8_1:8927025-8927044 None:intergenic 45.0%
ATGTCCGTGCATCCTCTAAA+AGG - chr8_1:8927027-8927046 Msa1176730:intron 45.0%
!! TCAGCCTTTTAGAGGATGCA+CGG + chr8_1:8927034-8927053 None:intergenic 45.0%
ATCTACCTTATTCTGCGGCT+TGG + chr8_1:8927273-8927292 None:intergenic 45.0%
CAACACATTACGGCAATGTC+CGG + chr8_1:8927339-8927358 None:intergenic 45.0%
GAAAGACAAGGAACCTGAAC+AGG - chr8_1:8927938-8927957 Msa1176730:intron 45.0%
TTACCAATTTCCGCTCGTGA+GGG + chr8_1:8928011-8928030 None:intergenic 45.0%
AATATGCTGCTGAGCTGAAG+CGG - chr8_1:8928187-8928206 Msa1176730:intron 45.0%
TCTACTAACCTCCTACGAAG+TGG - chr8_1:8928210-8928229 Msa1176730:intron 45.0%
AAGTGGCTCTCATACGTATG+AGG - chr8_1:8928227-8928246 Msa1176730:intron 45.0%
TCCGTAGTACCAGTCTCTAA+AGG - chr8_1:8928335-8928354 Msa1176730:CDS 45.0%
TCCAAAGTCTTTACCGGAGA+AGG - chr8_1:8928412-8928431 Msa1176730:exon 45.0%
TCCTTCTCCGGTAAAGACTT+TGG + chr8_1:8928416-8928435 None:intergenic 45.0%
GATCTTCGGGGCAAGTTGTT+TGG - chr8_1:8925943-8925962 Msa1176730:three_prime_UTR 50.0%
TCTAACGGGAAGGCGAAAGA+CGG - chr8_1:8925999-8926018 Msa1176730:exon 50.0%
CAGTTGGGGCAATGGAAAAC+AGG + chr8_1:8926621-8926640 None:intergenic 50.0%
CAAAGCCAAGCCGCAGAATA+AGG - chr8_1:8927265-8927284 Msa1176730:intron 50.0%
ACATTACGGCAATGTCCGGT+AGG + chr8_1:8927335-8927354 None:intergenic 50.0%
! ATATCTGAGGTTGTGGGAGC+TGG - chr8_1:8927966-8927985 Msa1176730:intron 50.0%
TACCAATTTCCGCTCGTGAG+GGG + chr8_1:8928010-8928029 None:intergenic 50.0%
GTTACCAATTTCCGCTCGTG+AGG + chr8_1:8928012-8928031 None:intergenic 50.0%
! GCGGAAATTGGTAACTCCCT+CGG - chr8_1:8928017-8928036 Msa1176730:intron 50.0%
TATGAGAGCCACTTCGTAGG+AGG + chr8_1:8928221-8928240 None:intergenic 50.0%
ACGTATGAGAGCCACTTCGT+AGG + chr8_1:8928224-8928243 None:intergenic 50.0%
TTTACCGGAGAAGGAACCGT+TGG - chr8_1:8928421-8928440 Msa1176730:five_prime_UTR 50.0%
TCGGGGCAAGTTGTTTGGGA+AGG - chr8_1:8925948-8925967 Msa1176730:three_prime_UTR 55.0%
!! GAGTGATTGGCCTCTGGTAG+CGG - chr8_1:8926234-8926253 Msa1176730:CDS 55.0%
!! AGTGATTGGCCTCTGGTAGC+GGG - chr8_1:8926235-8926254 Msa1176730:CDS 55.0%
TTGCGAAAACCCGCTACCAG+AGG + chr8_1:8926247-8926266 None:intergenic 55.0%
GGAGGCCGTCGATGCATTTC+TGG - chr8_1:8926062-8926081 Msa1176730:intron 60.0%
ATTTCCGCTCGTGAGGGGCT+CGG + chr8_1:8928005-8928024 None:intergenic 60.0%
AGCCCCTCACGAGCGGAAAT+TGG - chr8_1:8928005-8928024 Msa1176730:intron 60.0%
ACCGGAGAAGGAACCGTTGG+AGG - chr8_1:8928424-8928443 Msa1176730:five_prime_UTR 60.0%
GCCTCCAACGGTTCCTTCTC+CGG + chr8_1:8928428-8928447 None:intergenic 60.0%
AGGGGCTCGGCTTCTCAGCA+GGG + chr8_1:8927992-8928011 None:intergenic 65.0%
GAGGGGCTCGGCTTCTCAGC+AGG + chr8_1:8927993-8928012 None:intergenic 70.0%
GAAGCCGAGCCCCTCACGAG+CGG - chr8_1:8927998-8928017 Msa1176730:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 8925934 8928477 8925934 ID=Msa1176730;Name=Msa1176730
chr8_1 mRNA 8925934 8928477 8925934 ID=Msa1176730-mRNA-1;Parent=Msa1176730;Name=Msa1176730-mRNA-1;_AED=0.14;_eAED=0.14;_QI=62|0.8|0.83|1|1|1|6|73|220
chr8_1 exon 8925934 8926069 8925934 ID=Msa1176730-mRNA-1:exon:3016;Parent=Msa1176730-mRNA-1
chr8_1 exon 8926163 8926263 8926163 ID=Msa1176730-mRNA-1:exon:3015;Parent=Msa1176730-mRNA-1
chr8_1 exon 8926385 8926479 8926385 ID=Msa1176730-mRNA-1:exon:3014;Parent=Msa1176730-mRNA-1
chr8_1 exon 8927125 8927189 8927125 ID=Msa1176730-mRNA-1:exon:3013;Parent=Msa1176730-mRNA-1
chr8_1 exon 8927284 8927534 8927284 ID=Msa1176730-mRNA-1:exon:3012;Parent=Msa1176730-mRNA-1
chr8_1 exon 8928328 8928477 8928328 ID=Msa1176730-mRNA-1:exon:3011;Parent=Msa1176730-mRNA-1
chr8_1 five_prime_UTR 8928416 8928477 8928416 ID=Msa1176730-mRNA-1:five_prime_utr;Parent=Msa1176730-mRNA-1
chr8_1 CDS 8928328 8928415 8928328 ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1
chr8_1 CDS 8927284 8927534 8927284 ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1
chr8_1 CDS 8927125 8927189 8927125 ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1
chr8_1 CDS 8926385 8926479 8926385 ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1
chr8_1 CDS 8926163 8926263 8926163 ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1
chr8_1 CDS 8926007 8926069 8926007 ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1
chr8_1 three_prime_UTR 8925934 8926006 8925934 ID=Msa1176730-mRNA-1:three_prime_utr;Parent=Msa1176730-mRNA-1
Gene Sequence

>Msa1176730

ATGTCTAACGGGAAGGCGAAAGACGGTAGAGAAAGCTCATGCAGTGTTTTTGCTCTTTGTGGAATTGGAGGCCGTCGATGCATTTCTGCAAAATCTATACTAGCTGTGTCTGTTTTGTTGCTCTCGTATAATGATATAATTATCTGTCCTCATGCTGCTAGTGAATTTGGAGCTAAAATCGTGCTCCCGAAAAGAATTTTGAAAATGCTTCCAGAACTCTTTGATCACCAAGACCAAAATGTCCGTGCATCCTCTAAAAGGCTGACTTTTGAACTTTTTCGCTGGGTCTGCAAAGATGATGTAAAATCAATCTTGTTTGAGAAAATGAGAGACACAATGAAAAAAGAGTGGGAAGCAGAAGTTGTAAATGTTACAGGAACAGCAAAGCCAAGCCGCAGAATAAGATCTGAGAAAGACAAGGAACCTGAACAGGAAACTATATCTGAGGTTGTGGGAGCTGGCCCTGCTGAGAAGCCGAGCCCCTCACGAGCGGAAATTGAGTTTTTGAAGACGATACACCGTCCAAATAAAATAGAAAAATATGCTGCTGAGCTGAAGCGGTCTACTAACCTCCTACGAAGTGGCTCTCATACGTATGAGTACCAGTCTCTAAAGGAGCAGATTACGAGTTGTGCCAAGTATAACGGATTGTGTACTGCCTAG

Protein sequence

>Msa1176730

MSNGKAKDGRESSCSVFALCGIGGRRCISAKSILAVSVLLLSYNDIIICPHAASEFGAKIVLPKRILKMLPELFDHQDQNVRASSKRLTFELFRWVCKDDVKSILFEKMRDTMKKEWEAEVVNVTGTAKPSRRIRSEKDKEPEQETISEVVGAGPAEKPSPSRAEIEFLKTIHRPNKIEKYAAELKRSTNLLRSGSHTYEYQSLKEQITSCAKYNGLCTA*