Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176730 | RHN39554.1 | 81.416 | 113 | 21 | 0 | 46 | 158 | 151 | 263 | 2.15e-53 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176730 | sp|Q94FN2|MOR1_ARATH | 73.148 | 108 | 29 | 0 | 51 | 158 | 155 | 262 | 3.84e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1176730 | Msa1176740 | 0.802711 | 4.927264e-49 | -8.615850e-47 |
| Msa1176730 | Msa1176760 | 0.820202 | 7.769177e-53 | -8.615850e-47 |
| Msa1176730 | Msa1176770 | 0.847522 | 1.096585e-59 | -8.615850e-47 |
| Msa1176730 | Msa1277820 | 0.831907 | 1.279384e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176730 | MtrunA17_Chr8g0345051 | 81.416 | 113 | 21 | 0 | 46 | 158 | 151 | 263 | 1.97e-57 | 186 |
| Msa1176730 | MtrunA17_Chr1g0199191 | 83.186 | 113 | 19 | 0 | 46 | 158 | 150 | 262 | 1.03e-55 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176730 | AT2G35630.2 | 73.148 | 108 | 29 | 0 | 51 | 158 | 45 | 152 | 3.46e-47 | 166 |
| Msa1176730 | AT2G35630.1 | 73.148 | 108 | 29 | 0 | 51 | 158 | 155 | 262 | 3.90e-47 | 166 |
Find 55 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGCCGTCGATGCATTTC+TGG | 0.210666 | 8_1:-8928327 | Msa1176730:intron |
| CCTCATGCTGCTAGTGAATT+TGG | 0.240578 | 8_1:-8927453 | Msa1176730:CDS |
| CAAAGCCAAGCCGCAGAATA+AGG | 0.272720 | 8_1:-8927124 | Msa1176730:intron |
| GATCTTCGGGGCAAGTTGTT+TGG | 0.275070 | 8_1:-8928446 | Msa1176730:five_prime_UTR |
| TGAATTTGAATTTGATCTTC+GGG | 0.280997 | 8_1:-8928459 | None:intergenic |
| ATGTCCGTGCATCCTCTAAA+AGG | 0.298552 | 8_1:-8927362 | Msa1176730:CDS |
| TCAGATATAGTTTCCTGTTC+AGG | 0.305077 | 8_1:+8926438 | None:intergenic |
| AGCCCCTCACGAGCGGAAAT+TGG | 0.333468 | 8_1:-8926384 | Msa1176730:intron |
| TAGAGGATGCACGGACATTT+TGG | 0.334892 | 8_1:+8927367 | None:intergenic |
| GCAGAAGTTGTAAATGTTAC+AGG | 0.335661 | 8_1:-8927152 | Msa1176730:CDS |
| GAGGGGCTCGGCTTCTCAGC+AGG | 0.346933 | 8_1:+8926399 | None:intergenic |
| ATCTTCGGGGCAAGTTGTTT+GGG | 0.351272 | 8_1:-8928445 | Msa1176730:five_prime_UTR |
| TTGAATTTGAATTTGATCTT+CGG | 0.352424 | 8_1:-8928460 | None:intergenic |
| TCTTGGTGATCAAAGAGTTC+TGG | 0.372500 | 8_1:+8927390 | None:intergenic |
| AGGCTGATATCAAGAAATTC+AGG | 0.397026 | 8_1:-8925945 | Msa1176730:three_prime_UTR |
| TCCTTCTCCGGTAAAGACTT+TGG | 0.415499 | 8_1:+8925976 | None:intergenic |
| TGAAACTCCAAAGTCTTTAC+CGG | 0.427991 | 8_1:-8925983 | Msa1176730:three_prime_UTR |
| GCCTCCAACGGTTCCTTCTC+CGG | 0.437782 | 8_1:+8925964 | None:intergenic |
| ATATCTGAGGTTGTGGGAGC+TGG | 0.442783 | 8_1:-8926423 | Msa1176730:CDS |
| ATCTACCTTATTCTGCGGCT+TGG | 0.461561 | 8_1:+8927119 | None:intergenic |
| GAAAGACAAGGAACCTGAAC+AGG | 0.467000 | 8_1:-8926451 | Msa1176730:CDS |
| GGAAACTATATCTGAGGTTG+TGG | 0.474145 | 8_1:-8926430 | Msa1176730:CDS |
| ACGAGTTGTGCCAAGTATAA+CGG | 0.477587 | 8_1:-8926023 | Msa1176730:CDS |
| ATTTCCGCTCGTGAGGGGCT+CGG | 0.485622 | 8_1:+8926387 | None:intergenic |
| ACCGGAGAAGGAACCGTTGG+AGG | 0.491893 | 8_1:-8925965 | Msa1176730:three_prime_UTR |
| GTTGTGGCTAAATGTCTAAC+GGG | 0.514299 | 8_1:-8928404 | Msa1176730:exon |
| TCCAAAGTCTTTACCGGAGA+AGG | 0.524901 | 8_1:-8925977 | Msa1176730:three_prime_UTR |
| CAGATATCTACCTTATTCTG+CGG | 0.539484 | 8_1:+8927114 | None:intergenic |
| TAATCTGCTCCTTTAGAGAC+TGG | 0.540159 | 8_1:+8926045 | None:intergenic |
| TTTGCTCTTTGTGGAATTGG+AGG | 0.540539 | 8_1:-8928345 | Msa1176730:CDS |
| AGTACACAATCCGTTATACT+TGG | 0.543510 | 8_1:+8926013 | None:intergenic |
| GTTACCAATTTCCGCTCGTG+AGG | 0.546215 | 8_1:+8926380 | None:intergenic |
| TCCGTAGTACCAGTCTCTAA+AGG | 0.549308 | 8_1:-8926054 | Msa1176730:intron |
| TTACCAATTTCCGCTCGTGA+GGG | 0.551902 | 8_1:+8926381 | None:intergenic |
| AGGGGCTCGGCTTCTCAGCA+GGG | 0.555868 | 8_1:+8926400 | None:intergenic |
| GAAACTATATCTGAGGTTGT+GGG | 0.561907 | 8_1:-8926429 | Msa1176730:CDS |
| AAGTGGCTCTCATACGTATG+AGG | 0.563131 | 8_1:-8926162 | Msa1176730:intron |
| TTTACCGGAGAAGGAACCGT+TGG | 0.569658 | 8_1:-8925968 | Msa1176730:three_prime_UTR |
| AATATGCTGCTGAGCTGAAG+CGG | 0.570805 | 8_1:-8926202 | Msa1176730:CDS |
| GGAAGTTTGTGATGCAGTTG+TGG | 0.579720 | 8_1:-8928420 | Msa1176730:five_prime_UTR |
| TCGGGGCAAGTTGTTTGGGA+AGG | 0.580660 | 8_1:-8928441 | Msa1176730:five_prime_UTR |
| TACCAATTTCCGCTCGTGAG+GGG | 0.587121 | 8_1:+8926382 | None:intergenic |
| AAGACTTTGGAGTTTCAGCT+AGG | 0.590481 | 8_1:+8925989 | None:intergenic |
| GAATTTGAATTTGATCTTCG+GGG | 0.596251 | 8_1:-8928458 | Msa1176730:five_prime_UTR |
| TCTAACGGGAAGGCGAAAGA+CGG | 0.596508 | 8_1:-8928390 | Msa1176730:CDS |
| AGTTGTGGCTAAATGTCTAA+CGG | 0.597240 | 8_1:-8928405 | Msa1176730:exon |
| TTCTTGATATCAGCCTCCAA+CGG | 0.604556 | 8_1:+8925952 | None:intergenic |
| TGGCTAAATGTCTAACGGGA+AGG | 0.614989 | 8_1:-8928400 | Msa1176730:exon |
| TATGAGAGCCACTTCGTAGG+AGG | 0.630310 | 8_1:+8926171 | None:intergenic |
| TAGTACCAGAAATGCATCGA+CGG | 0.643334 | 8_1:+8928322 | None:intergenic |
| TGAGAAAATGAGAGACACAA+TGG | 0.645368 | 8_1:-8927283 | Msa1176730:intron |
| TGAACAGGAAACTATATCTG+AGG | 0.664652 | 8_1:-8926436 | Msa1176730:CDS |
| CCAAATTCACTAGCAGCATG+AGG | 0.668289 | 8_1:+8927453 | None:intergenic |
| TCTACTAACCTCCTACGAAG+TGG | 0.677424 | 8_1:-8926179 | Msa1176730:CDS |
| ACGTATGAGAGCCACTTCGT+AGG | 0.678193 | 8_1:+8926168 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATATTTTGACATTTA+CGG | - | chr8_1:8926297-8926316 | Msa1176730:intron | 15.0% |
| !! | AAAAAAAATTGTCAATTTGA+TGG | - | chr8_1:8927566-8927585 | Msa1176730:intron | 15.0% |
| !! | AAATATTCTTCAAAAGAAAA+TGG | - | chr8_1:8927611-8927630 | Msa1176730:intron | 15.0% |
| !!! | ATTTTTCTATTTTATTTGGA+CGG | + | chr8_1:8928170-8928189 | None:intergenic | 15.0% |
| !!! | GCATATTTTTCTATTTTATT+TGG | + | chr8_1:8928174-8928193 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATGAAAGTTTA+TGG | - | chr8_1:8928250-8928269 | Msa1176730:intron | 15.0% |
| !! | AAATATTATGAACCAAAACA+AGG | + | chr8_1:8926717-8926736 | None:intergenic | 20.0% |
| !!! | GGTTCATAATATTTTTGATA+TGG | - | chr8_1:8926723-8926742 | Msa1176730:intron | 20.0% |
| !!! | AGCATTTTCAAAATTCTTTT+CGG | + | chr8_1:8926978-8926997 | None:intergenic | 20.0% |
| !! | GATACTTTACAATTTACATT+AGG | + | chr8_1:8927177-8927196 | None:intergenic | 20.0% |
| !! | TCATATCTTAAAAAGCAAAA+TGG | + | chr8_1:8927440-8927459 | None:intergenic | 20.0% |
| !!! | TTTTGAATAGTTTTGTTCAT+TGG | + | chr8_1:8927664-8927683 | None:intergenic | 20.0% |
| !! | TAATTGTAAATCATTGTATG+AGG | - | chr8_1:8927871-8927890 | Msa1176730:intron | 20.0% |
| !! | AATTGTAAATCATTGTATGA+GGG | - | chr8_1:8927872-8927891 | Msa1176730:intron | 20.0% |
| !!! | TTTATCTTCTATTTAGTTTG+TGG | - | chr8_1:8928066-8928085 | Msa1176730:intron | 20.0% |
| !! | TTGTTTGATGTATATACATT+TGG | - | chr8_1:8928089-8928108 | Msa1176730:intron | 20.0% |
| !! | AGTTAAAAAAGAAAAAGACA+AGG | + | chr8_1:8928123-8928142 | None:intergenic | 20.0% |
| ! | TCATTCATCATTTATGATCA+TGG | - | chr8_1:8926152-8926171 | Msa1176730:intron | 25.0% |
| ! | ATATGATTCAATTGAGTGAT+TGG | - | chr8_1:8926221-8926240 | Msa1176730:CDS | 25.0% |
| ! | AAAGAATTTCCATATCAGTT+GGG | + | chr8_1:8926636-8926655 | None:intergenic | 25.0% |
| ! | AAAAGAATTTCCATATCAGT+TGG | + | chr8_1:8926637-8926656 | None:intergenic | 25.0% |
| ! | AAATAGAAAACACTAGAACA+GGG | + | chr8_1:8926693-8926712 | None:intergenic | 25.0% |
| ! | AAAATAGAAAACACTAGAAC+AGG | + | chr8_1:8926694-8926713 | None:intergenic | 25.0% |
| !!! | GTTTTCTATTTTCCTTGTTT+TGG | - | chr8_1:8926702-8926721 | Msa1176730:intron | 25.0% |
| ! | ATGTTATGTTTCAAGCTTTA+AGG | - | chr8_1:8926839-8926858 | Msa1176730:intron | 25.0% |
| !! | GCATTTTCAAAATTCTTTTC+GGG | + | chr8_1:8926977-8926996 | None:intergenic | 25.0% |
| ! | ATAACAAATCAATCACTAAG+AGG | + | chr8_1:8927146-8927165 | None:intergenic | 25.0% |
| ! | ACTTTACAATTTACATTAGG+AGG | + | chr8_1:8927174-8927193 | None:intergenic | 25.0% |
| ! | GGAAAGGGATAAAATAAAAA+AGG | + | chr8_1:8927419-8927438 | None:intergenic | 25.0% |
| ! | CTTAAAAAGCAAAATGGAAA+GGG | + | chr8_1:8927434-8927453 | None:intergenic | 25.0% |
| ! | TCTTAAAAAGCAAAATGGAA+AGG | + | chr8_1:8927435-8927454 | None:intergenic | 25.0% |
| !! | AAAAAGAGTTTCAGTTTTCA+GGG | + | chr8_1:8927800-8927819 | None:intergenic | 25.0% |
| !! | TAAAAAGAGTTTCAGTTTTC+AGG | + | chr8_1:8927801-8927820 | None:intergenic | 25.0% |
| ! | TCTCAGATCTAAAAAAATGT+TGG | + | chr8_1:8927920-8927939 | None:intergenic | 25.0% |
| !!! | TAAATCAAAAGCATTGCTAA+AGG | + | chr8_1:8928278-8928297 | None:intergenic | 25.0% |
| !! | CCTCAAGTTGAATATTGTAA+TGG | + | chr8_1:8926129-8926148 | None:intergenic | 30.0% |
| CCATTACAATATTCAACTTG+AGG | - | chr8_1:8926126-8926145 | Msa1176730:intron | 30.0% | |
| TTGTAAACTGATGTGAGTTT+AGG | - | chr8_1:8926361-8926380 | Msa1176730:intron | 30.0% | |
| AAGAATTTCCATATCAGTTG+GGG | + | chr8_1:8926635-8926654 | None:intergenic | 30.0% | |
| TGAAACATAACATCTATTGC+AGG | + | chr8_1:8926832-8926851 | None:intergenic | 30.0% | |
| !! | ATGTTTCAAGCTTTAAGGTT+TGG | - | chr8_1:8926844-8926863 | Msa1176730:intron | 30.0% |
| TCTTTCTGTAGAAAAAAGAG+TGG | - | chr8_1:8927211-8927230 | Msa1176730:intron | 30.0% | |
| CTTTCTGTAGAAAAAAGAGT+GGG | - | chr8_1:8927212-8927231 | Msa1176730:intron | 30.0% | |
| ATAAAAAAGGATCTTCTCGA+TGG | + | chr8_1:8927311-8927330 | None:intergenic | 30.0% | |
| ! | AAAAAGTATAAGAATGCTCG+TGG | + | chr8_1:8927366-8927385 | None:intergenic | 30.0% |
| ! | AAAAAAGGCGTACATAATGA+AGG | + | chr8_1:8927404-8927423 | None:intergenic | 30.0% |
| TAGCATTAAAGATCGTCTAA+GGG | + | chr8_1:8927514-8927533 | None:intergenic | 30.0% | |
| ! | TTTTAGTATCTACCCTAGAT+AGG | + | chr8_1:8927594-8927613 | None:intergenic | 30.0% |
| CAAAAATTATGCCGGAAATT+TGG | + | chr8_1:8927745-8927764 | None:intergenic | 30.0% | |
| TCAGGGAGTAAGTTAAAATT+TGG | + | chr8_1:8927783-8927802 | None:intergenic | 30.0% | |
| ! | TCTTTTTATCAAGCCAGATA+GGG | - | chr8_1:8927813-8927832 | Msa1176730:intron | 30.0% |
| !!! | GAATCTTTTGCTTGTTATGT+TGG | - | chr8_1:8927845-8927864 | Msa1176730:intron | 30.0% |
| TGTTGGAATATCTATCAAGA+TGG | + | chr8_1:8927903-8927922 | None:intergenic | 30.0% | |
| ! | TTTTAGATCTGAGAAAGACA+AGG | - | chr8_1:8927926-8927945 | Msa1176730:intron | 30.0% |
| AGTTGTGGCTAAATGTCTAA+CGG | - | chr8_1:8925984-8926003 | Msa1176730:three_prime_UTR | 35.0% | |
| ! | GTTTTTGCTCTTTGTGGAAT+TGG | - | chr8_1:8926041-8926060 | Msa1176730:CDS | 35.0% |
| TCAGAGCGCAATATGAAATA+TGG | + | chr8_1:8926280-8926299 | None:intergenic | 35.0% | |
| !!! | GTCTCACTTTTTCGATTTCT+AGG | + | chr8_1:8926403-8926422 | None:intergenic | 35.0% |
| GGTTTGATTGTCCTGATTAA+TGG | - | chr8_1:8926444-8926463 | Msa1176730:CDS | 35.0% | |
| GATTGTCCTGATTAATGGTT+TGG | - | chr8_1:8926449-8926468 | Msa1176730:CDS | 35.0% | |
| TCTGTGATCCAACATAAACA+GGG | + | chr8_1:8926538-8926557 | None:intergenic | 35.0% | |
| TTCTGTGATCCAACATAAAC+AGG | + | chr8_1:8926539-8926558 | None:intergenic | 35.0% | |
| CTTTCTGTTGCATATTTACG+AGG | - | chr8_1:8926569-8926588 | Msa1176730:intron | 35.0% | |
| CTTTAGCAACTTTGTTCATG+CGG | + | chr8_1:8926801-8926820 | None:intergenic | 35.0% | |
| CATGAACAAAGTTGCTAAAG+CGG | - | chr8_1:8926801-8926820 | Msa1176730:intron | 35.0% | |
| ! | TTCAAAAGTCAGCCTTTTAG+AGG | + | chr8_1:8927042-8927061 | None:intergenic | 35.0% |
| !!! | TGACTTTTGAACTTTTTCGC+TGG | - | chr8_1:8927051-8927070 | Msa1176730:intron | 35.0% |
| !!! | GACTTTTGAACTTTTTCGCT+GGG | - | chr8_1:8927052-8927071 | Msa1176730:intron | 35.0% |
| TGAGAAAATGAGAGACACAA+TGG | - | chr8_1:8927106-8927125 | Msa1176730:intron | 35.0% | |
| CAGAAAGAAAGAGAGAGAAT+TGG | + | chr8_1:8927199-8927218 | None:intergenic | 35.0% | |
| GCAGAAGTTGTAAATGTTAC+AGG | - | chr8_1:8927237-8927256 | Msa1176730:intron | 35.0% | |
| CAGATATCTACCTTATTCTG+CGG | + | chr8_1:8927278-8927297 | None:intergenic | 35.0% | |
| !!! | AGATCCTTTTTTATGCCTAC+CGG | - | chr8_1:8927317-8927336 | Msa1176730:CDS | 35.0% |
| TCAGATGTCATAATGCTGTT+TGG | - | chr8_1:8927487-8927506 | Msa1176730:CDS | 35.0% | |
| CTAGCATTAAAGATCGTCTA+AGG | + | chr8_1:8927515-8927534 | None:intergenic | 35.0% | |
| AATTTGATGGAGCCTATCTA+GGG | - | chr8_1:8927579-8927598 | Msa1176730:intron | 35.0% | |
| !!! | TAGTTTTGTTCATTGGAAGC+AGG | + | chr8_1:8927657-8927676 | None:intergenic | 35.0% |
| ! | ATTTCCGGCATAATTTTTGC+TGG | - | chr8_1:8927746-8927765 | Msa1176730:intron | 35.0% |
| ACAACCAGCAAAAATTATGC+CGG | + | chr8_1:8927753-8927772 | None:intergenic | 35.0% | |
| ! | CTCTTTTTATCAAGCCAGAT+AGG | - | chr8_1:8927812-8927831 | Msa1176730:intron | 35.0% |
| ! | CTTTTTATCAAGCCAGATAG+GGG | - | chr8_1:8927814-8927833 | Msa1176730:intron | 35.0% |
| ! | ATTCAAGTTAAACCCCTATC+TGG | + | chr8_1:8927829-8927848 | None:intergenic | 35.0% |
| TCAGATATAGTTTCCTGTTC+AGG | + | chr8_1:8927954-8927973 | None:intergenic | 35.0% | |
| TGAACAGGAAACTATATCTG+AGG | - | chr8_1:8927953-8927972 | Msa1176730:intron | 35.0% | |
| ! | GAAACTATATCTGAGGTTGT+GGG | - | chr8_1:8927960-8927979 | Msa1176730:intron | 35.0% |
| GAAACGATTTATTTGACCGA+GGG | + | chr8_1:8928036-8928055 | None:intergenic | 35.0% | |
| AGAAACGATTTATTTGACCG+AGG | + | chr8_1:8928037-8928056 | None:intergenic | 35.0% | |
| AGTACACAATCCGTTATACT+TGG | + | chr8_1:8928379-8928398 | None:intergenic | 35.0% | |
| TGAAACTCCAAAGTCTTTAC+CGG | - | chr8_1:8928406-8928425 | Msa1176730:exon | 35.0% | |
| AGGCTGATATCAAGAAATTC+AGG | - | chr8_1:8928444-8928463 | Msa1176730:five_prime_UTR | 35.0% | |
| GTTGTGGCTAAATGTCTAAC+GGG | - | chr8_1:8925985-8926004 | Msa1176730:three_prime_UTR | 40.0% | |
| !! | TGCAGTGTTTTTGCTCTTTG+TGG | - | chr8_1:8926035-8926054 | Msa1176730:CDS | 40.0% |
| TTTGCTCTTTGTGGAATTGG+AGG | - | chr8_1:8926044-8926063 | Msa1176730:CDS | 40.0% | |
| TAGTACCAGAAATGCATCGA+CGG | + | chr8_1:8926070-8926089 | None:intergenic | 40.0% | |
| TCGAAAAAGTGAGACAGTAG+TGG | - | chr8_1:8926408-8926427 | Msa1176730:CDS | 40.0% | |
| ! | AAAAGTGAGACAGTAGTGGA+TGG | - | chr8_1:8926412-8926431 | Msa1176730:CDS | 40.0% |
| CACATGCCAAACCATTAATC+AGG | + | chr8_1:8926458-8926477 | None:intergenic | 40.0% | |
| TTGTAGAGCCCTGTTTATGT+TGG | - | chr8_1:8926527-8926546 | Msa1176730:intron | 40.0% | |
| ! | TCTTGGTGATCAAAGAGTTC+TGG | + | chr8_1:8927002-8927021 | None:intergenic | 40.0% |
| GACACAATGGTAAGCTTATC+TGG | - | chr8_1:8927119-8927138 | Msa1176730:intron | 40.0% | |
| ATGTCCGGTAGGCATAAAAA+AGG | + | chr8_1:8927324-8927343 | None:intergenic | 40.0% | |
| ! | TCGTGGATTGCAACACATTA+CGG | + | chr8_1:8927349-8927368 | None:intergenic | 40.0% |
| CATCTGAATGCACAAATCTC+TGG | + | chr8_1:8927474-8927493 | None:intergenic | 40.0% | |
| CAATTTGATGGAGCCTATCT+AGG | - | chr8_1:8927578-8927597 | Msa1176730:intron | 40.0% | |
| TTGTTCATTGGAAGCAGGTA+GGG | + | chr8_1:8927652-8927671 | None:intergenic | 40.0% | |
| TTTGTTCATTGGAAGCAGGT+AGG | + | chr8_1:8927653-8927672 | None:intergenic | 40.0% | |
| ! | TTTTGCTCGAGCCAAATTTC+CGG | - | chr8_1:8927731-8927750 | Msa1176730:intron | 40.0% |
| ! | GGAAACTATATCTGAGGTTG+TGG | - | chr8_1:8927959-8927978 | Msa1176730:intron | 40.0% |
| ! | TCCTTTAGAGACTGGTACTA+CGG | + | chr8_1:8928339-8928358 | None:intergenic | 40.0% |
| ! | TAATCTGCTCCTTTAGAGAC+TGG | + | chr8_1:8928347-8928366 | None:intergenic | 40.0% |
| ACGAGTTGTGCCAAGTATAA+CGG | - | chr8_1:8928366-8928385 | Msa1176730:CDS | 40.0% | |
| !! | AAGACTTTGGAGTTTCAGCT+AGG | + | chr8_1:8928403-8928422 | None:intergenic | 40.0% |
| TTCTTGATATCAGCCTCCAA+CGG | + | chr8_1:8928440-8928459 | None:intergenic | 40.0% | |
| ATCTTCGGGGCAAGTTGTTT+GGG | - | chr8_1:8925944-8925963 | Msa1176730:three_prime_UTR | 45.0% | |
| GGAAGTTTGTGATGCAGTTG+TGG | - | chr8_1:8925969-8925988 | Msa1176730:three_prime_UTR | 45.0% | |
| TGGCTAAATGTCTAACGGGA+AGG | - | chr8_1:8925989-8926008 | Msa1176730:exon | 45.0% | |
| !! | TCAATTGAGTGATTGGCCTC+TGG | - | chr8_1:8926228-8926247 | Msa1176730:CDS | 45.0% |
| !! | AGTAGTGGATGGCATTGTTG+AGG | - | chr8_1:8926423-8926442 | Msa1176730:CDS | 45.0% |
| TTCCATTGCCCCAACTGATA+TGG | - | chr8_1:8926624-8926643 | Msa1176730:intron | 45.0% | |
| TTCCATATCAGTTGGGGCAA+TGG | + | chr8_1:8926629-8926648 | None:intergenic | 45.0% | |
| GAACAAAGTTGCTAAAGCGG+TGG | - | chr8_1:8926804-8926823 | Msa1176730:intron | 45.0% | |
| CCAAATTCACTAGCAGCATG+AGG | + | chr8_1:8926939-8926958 | None:intergenic | 45.0% | |
| CCTCATGCTGCTAGTGAATT+TGG | - | chr8_1:8926936-8926955 | Msa1176730:intron | 45.0% | |
| !! | ATGCACGGACATTTTGGTCT+TGG | + | chr8_1:8927019-8927038 | None:intergenic | 45.0% |
| ! | TAGAGGATGCACGGACATTT+TGG | + | chr8_1:8927025-8927044 | None:intergenic | 45.0% |
| ATGTCCGTGCATCCTCTAAA+AGG | - | chr8_1:8927027-8927046 | Msa1176730:intron | 45.0% | |
| !! | TCAGCCTTTTAGAGGATGCA+CGG | + | chr8_1:8927034-8927053 | None:intergenic | 45.0% |
| ATCTACCTTATTCTGCGGCT+TGG | + | chr8_1:8927273-8927292 | None:intergenic | 45.0% | |
| CAACACATTACGGCAATGTC+CGG | + | chr8_1:8927339-8927358 | None:intergenic | 45.0% | |
| GAAAGACAAGGAACCTGAAC+AGG | - | chr8_1:8927938-8927957 | Msa1176730:intron | 45.0% | |
| TTACCAATTTCCGCTCGTGA+GGG | + | chr8_1:8928011-8928030 | None:intergenic | 45.0% | |
| AATATGCTGCTGAGCTGAAG+CGG | - | chr8_1:8928187-8928206 | Msa1176730:intron | 45.0% | |
| TCTACTAACCTCCTACGAAG+TGG | - | chr8_1:8928210-8928229 | Msa1176730:intron | 45.0% | |
| AAGTGGCTCTCATACGTATG+AGG | - | chr8_1:8928227-8928246 | Msa1176730:intron | 45.0% | |
| TCCGTAGTACCAGTCTCTAA+AGG | - | chr8_1:8928335-8928354 | Msa1176730:CDS | 45.0% | |
| TCCAAAGTCTTTACCGGAGA+AGG | - | chr8_1:8928412-8928431 | Msa1176730:exon | 45.0% | |
| TCCTTCTCCGGTAAAGACTT+TGG | + | chr8_1:8928416-8928435 | None:intergenic | 45.0% | |
| GATCTTCGGGGCAAGTTGTT+TGG | - | chr8_1:8925943-8925962 | Msa1176730:three_prime_UTR | 50.0% | |
| TCTAACGGGAAGGCGAAAGA+CGG | - | chr8_1:8925999-8926018 | Msa1176730:exon | 50.0% | |
| CAGTTGGGGCAATGGAAAAC+AGG | + | chr8_1:8926621-8926640 | None:intergenic | 50.0% | |
| CAAAGCCAAGCCGCAGAATA+AGG | - | chr8_1:8927265-8927284 | Msa1176730:intron | 50.0% | |
| ACATTACGGCAATGTCCGGT+AGG | + | chr8_1:8927335-8927354 | None:intergenic | 50.0% | |
| ! | ATATCTGAGGTTGTGGGAGC+TGG | - | chr8_1:8927966-8927985 | Msa1176730:intron | 50.0% |
| TACCAATTTCCGCTCGTGAG+GGG | + | chr8_1:8928010-8928029 | None:intergenic | 50.0% | |
| GTTACCAATTTCCGCTCGTG+AGG | + | chr8_1:8928012-8928031 | None:intergenic | 50.0% | |
| ! | GCGGAAATTGGTAACTCCCT+CGG | - | chr8_1:8928017-8928036 | Msa1176730:intron | 50.0% |
| TATGAGAGCCACTTCGTAGG+AGG | + | chr8_1:8928221-8928240 | None:intergenic | 50.0% | |
| ACGTATGAGAGCCACTTCGT+AGG | + | chr8_1:8928224-8928243 | None:intergenic | 50.0% | |
| TTTACCGGAGAAGGAACCGT+TGG | - | chr8_1:8928421-8928440 | Msa1176730:five_prime_UTR | 50.0% | |
| TCGGGGCAAGTTGTTTGGGA+AGG | - | chr8_1:8925948-8925967 | Msa1176730:three_prime_UTR | 55.0% | |
| !! | GAGTGATTGGCCTCTGGTAG+CGG | - | chr8_1:8926234-8926253 | Msa1176730:CDS | 55.0% |
| !! | AGTGATTGGCCTCTGGTAGC+GGG | - | chr8_1:8926235-8926254 | Msa1176730:CDS | 55.0% |
| TTGCGAAAACCCGCTACCAG+AGG | + | chr8_1:8926247-8926266 | None:intergenic | 55.0% | |
| GGAGGCCGTCGATGCATTTC+TGG | - | chr8_1:8926062-8926081 | Msa1176730:intron | 60.0% | |
| ATTTCCGCTCGTGAGGGGCT+CGG | + | chr8_1:8928005-8928024 | None:intergenic | 60.0% | |
| AGCCCCTCACGAGCGGAAAT+TGG | - | chr8_1:8928005-8928024 | Msa1176730:intron | 60.0% | |
| ACCGGAGAAGGAACCGTTGG+AGG | - | chr8_1:8928424-8928443 | Msa1176730:five_prime_UTR | 60.0% | |
| GCCTCCAACGGTTCCTTCTC+CGG | + | chr8_1:8928428-8928447 | None:intergenic | 60.0% | |
| AGGGGCTCGGCTTCTCAGCA+GGG | + | chr8_1:8927992-8928011 | None:intergenic | 65.0% | |
| GAGGGGCTCGGCTTCTCAGC+AGG | + | chr8_1:8927993-8928012 | None:intergenic | 70.0% | |
| GAAGCCGAGCCCCTCACGAG+CGG | - | chr8_1:8927998-8928017 | Msa1176730:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 8925934 | 8928477 | 8925934 | ID=Msa1176730;Name=Msa1176730 |
| chr8_1 | mRNA | 8925934 | 8928477 | 8925934 | ID=Msa1176730-mRNA-1;Parent=Msa1176730;Name=Msa1176730-mRNA-1;_AED=0.14;_eAED=0.14;_QI=62|0.8|0.83|1|1|1|6|73|220 |
| chr8_1 | exon | 8925934 | 8926069 | 8925934 | ID=Msa1176730-mRNA-1:exon:3016;Parent=Msa1176730-mRNA-1 |
| chr8_1 | exon | 8926163 | 8926263 | 8926163 | ID=Msa1176730-mRNA-1:exon:3015;Parent=Msa1176730-mRNA-1 |
| chr8_1 | exon | 8926385 | 8926479 | 8926385 | ID=Msa1176730-mRNA-1:exon:3014;Parent=Msa1176730-mRNA-1 |
| chr8_1 | exon | 8927125 | 8927189 | 8927125 | ID=Msa1176730-mRNA-1:exon:3013;Parent=Msa1176730-mRNA-1 |
| chr8_1 | exon | 8927284 | 8927534 | 8927284 | ID=Msa1176730-mRNA-1:exon:3012;Parent=Msa1176730-mRNA-1 |
| chr8_1 | exon | 8928328 | 8928477 | 8928328 | ID=Msa1176730-mRNA-1:exon:3011;Parent=Msa1176730-mRNA-1 |
| chr8_1 | five_prime_UTR | 8928416 | 8928477 | 8928416 | ID=Msa1176730-mRNA-1:five_prime_utr;Parent=Msa1176730-mRNA-1 |
| chr8_1 | CDS | 8928328 | 8928415 | 8928328 | ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1 |
| chr8_1 | CDS | 8927284 | 8927534 | 8927284 | ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1 |
| chr8_1 | CDS | 8927125 | 8927189 | 8927125 | ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1 |
| chr8_1 | CDS | 8926385 | 8926479 | 8926385 | ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1 |
| chr8_1 | CDS | 8926163 | 8926263 | 8926163 | ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1 |
| chr8_1 | CDS | 8926007 | 8926069 | 8926007 | ID=Msa1176730-mRNA-1:cds;Parent=Msa1176730-mRNA-1 |
| chr8_1 | three_prime_UTR | 8925934 | 8926006 | 8925934 | ID=Msa1176730-mRNA-1:three_prime_utr;Parent=Msa1176730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
