AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176970 MtrunA17_Chr8g0347801 92.411 593 3 2 1 593 1 551 0.0 1095
Msa1176970 MtrunA17_Chr4g0046761 61.224 147 54 2 163 309 39 182 1.69e-48 167
Msa1176970 MtrunA17_Chr4g0046771 74.194 62 16 0 441 502 28 89 1.18e-27 106
Msa1176970 MtrunA17_Chr4g0046781 69.643 56 17 0 513 568 1 56 3.41e-22 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176970 AT3G61600.1 74.161 596 102 6 5 593 7 557 0.0 883
Msa1176970 AT3G61600.2 74.161 596 102 6 5 593 7 557 0.0 883
Msa1176970 AT2G46260.1 73.534 597 104 8 5 593 6 556 0.0 866
Msa1176970 AT4G01160.2 55.113 577 197 10 24 592 4 526 0.0 578
Msa1176970 AT4G01160.1 54.861 576 178 9 24 592 4 504 0.0 576

Find 188 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTTCCAACCTTATCTT+AGG 0.136082 8_1:+9324971 Msa1176970:five_prime_UTR
GTTCTGTCAATGTCTTCTTT+TGG 0.195530 8_1:+9328518 Msa1176970:three_prime_UTR
GATTGTCTTTACTTCATTAA+TGG 0.228738 8_1:+9328365 Msa1176970:CDS
TTGCTCGAGCCGTCGTTTCT+TGG 0.232570 8_1:+9327947 Msa1176970:CDS
CCAGCAGTGTGTAGTATATT+TGG 0.271055 8_1:+9328022 Msa1176970:CDS
CAAAGTTCTTTCCATTGCTT+TGG 0.271545 8_1:+9328158 Msa1176970:CDS
ATGATAGTAATTTCTCTGAT+AGG 0.288454 8_1:+9325144 Msa1176970:CDS
TAAGACAGCACCTGGTTTGC+TGG 0.309622 8_1:+9326969 Msa1176970:CDS
ACGGAGGGAGTAGTATATTT+AGG 0.313554 8_1:+9324841 None:intergenic
TGAAGCAACTTCAAATTTAT+CGG 0.325451 8_1:-9327007 None:intergenic
GATTCCATGGACTTCGTTCA+TGG 0.328777 8_1:+9328337 Msa1176970:CDS
TCTAGCTCCGACGCCGATTT+CGG 0.333073 8_1:+9325110 Msa1176970:CDS
CATGTATATGACCAGGTTCC+AGG 0.344944 8_1:+9327599 Msa1176970:intron
TAAAAGCCCGTTCTTCTATA+AGG 0.350419 8_1:+9326638 Msa1176970:CDS
TGTCCCACATGTGCATAATA+TGG 0.350967 8_1:+9328809 Msa1176970:three_prime_UTR
CCGGCCAGACGGGAACAAAT+TGG 0.356600 8_1:-9328066 None:intergenic
GATTATGCATGGAGTTATCT+AGG 0.356665 8_1:+9328719 Msa1176970:three_prime_UTR
TTAAGACCTTCTTAAGCTTT+CGG 0.371733 8_1:-9327815 None:intergenic
CCATTCAAAATCTGCTCATC+TGG 0.375584 8_1:-9325927 None:intergenic
ACATATCAGTTCTCCGATCT+TGG 0.385355 8_1:+9326611 Msa1176970:CDS
TTGTACCTCTATTGCTGATT+GGG 0.388063 8_1:+9325223 Msa1176970:CDS
TGCTTTGCCGCATCAGTTAG+TGG 0.388482 8_1:-9327138 None:intergenic
GCTGCCATCTAGTGTCTTAA+TGG 0.391173 8_1:+9327101 Msa1176970:CDS
GTCTGGCCGGGTTTATTCTC+AGG 0.392633 8_1:+9328079 Msa1176970:CDS
AAAGTTCTTTCCATTGCTTT+GGG 0.394503 8_1:+9328159 Msa1176970:CDS
CCAATTTGTTCCCGTCTGGC+CGG 0.395141 8_1:+9328066 Msa1176970:CDS
CAATTTGTTCCCGTCTGGCC+GGG 0.395259 8_1:+9328067 Msa1176970:CDS
AGCTTTCGGCAGGTCATATG+AGG 0.407830 8_1:-9327801 None:intergenic
TTTGTGATCAGCCCACAATT+TGG 0.408742 8_1:+9328764 Msa1176970:three_prime_UTR
ATTGTACCTCTATTGCTGAT+TGG 0.409104 8_1:+9325222 Msa1176970:CDS
TGTTCCAATTTGTTCCCGTC+TGG 0.416143 8_1:+9328062 Msa1176970:CDS
TTATGTCCTTCATTACCCTT+GGG 0.416318 8_1:-9328853 None:intergenic
GAATCAGGTTGAGGATCAAC+TGG 0.418846 8_1:-9325194 None:intergenic
TATCTTCCAGATTGCCGTAC+TGG 0.419089 8_1:-9327734 None:intergenic
TTATTCTCAGGCATTTCACT+TGG 0.423250 8_1:+9328091 Msa1176970:CDS
TCAGATTCCATCACCGTAAC+CGG 0.431515 8_1:-9325071 None:intergenic
ATGGTTGAAGAATCCCCTTC+TGG 0.431713 8_1:+9326011 Msa1176970:CDS
ACCCTCAGAATTAATGCTTC+TGG 0.431935 8_1:+9326792 Msa1176970:CDS
CACTGTGGACTATGAATTTG+CGG 0.433172 8_1:+9328220 Msa1176970:CDS
ATGAAATCGAAAGGATAGTT+AGG 0.433980 8_1:+9328677 Msa1176970:three_prime_UTR
AGGTAAAGCAATGCAGATTC+AGG 0.434966 8_1:-9327075 None:intergenic
CGATCTGTTTGATCCGGTTA+CGG 0.437284 8_1:+9325058 Msa1176970:CDS
ATTATGTCCTTCATTACCCT+TGG 0.441018 8_1:-9328854 None:intergenic
CAATTTCCAACCTTATCTTA+GGG 0.441947 8_1:+9324972 Msa1176970:five_prime_UTR
TGAATCTGCATTGCTTTACC+TGG 0.451325 8_1:+9327077 Msa1176970:CDS
TGATAGTAATTTCTCTGATA+GGG 0.451951 8_1:+9325145 Msa1176970:CDS
GAATTCCGATCTGTTTGATC+CGG 0.452265 8_1:+9325052 Msa1176970:CDS
TTCGAATGGGATGAGGGAAT+CGG 0.454577 8_1:+9326755 Msa1176970:CDS
GCTCTACCTTATAGAAGAAC+GGG 0.455173 8_1:-9326644 None:intergenic
TCAAATTCAACCACCTTGAC+AGG 0.458404 8_1:-9327990 None:intergenic
AGTACGGCAATCTGGAAGAT+AGG 0.459958 8_1:+9327736 Msa1176970:CDS
ATGGACTTCGTTCATGGCTG+AGG 0.461086 8_1:+9328343 Msa1176970:CDS
GTTTGATCCGGTTACGGTGA+TGG 0.462190 8_1:+9325064 Msa1176970:CDS
TGATGGTGAGCTCGGCCCTT+AGG 0.463714 8_1:-9328397 None:intergenic
TTAATGGCGTTCTACACCTA+AGG 0.467779 8_1:+9328381 Msa1176970:CDS
TCAGCCATTAAGACACTAGA+TGG 0.468273 8_1:-9327105 None:intergenic
ATTGAAAGCAAATCCGAAAT+CGG 0.472219 8_1:-9325123 None:intergenic
AATTTATTCTTCATTCATGA+AGG 0.473516 8_1:+9325025 Msa1176970:exon
GAAACTTGTTTGCGATTCCA+TGG 0.474206 8_1:+9328324 Msa1176970:CDS
TTTGTTTCAATATATGTTTG+AGG 0.475005 8_1:-9324886 None:intergenic
GAGTAATCCATGCCCAGGTT+GGG 0.476612 8_1:-9326558 None:intergenic
ATTGGGCGAGGCATCGGAAG+AGG 0.477342 8_1:+9325240 Msa1176970:CDS
TAGACACCAGTACGGCAATC+TGG 0.477520 8_1:+9327728 Msa1176970:CDS
GCATTTCACTTGGGTGGACA+AGG 0.479220 8_1:+9328101 Msa1176970:CDS
TTGTGTGGCTTCTGAAAATC+AGG 0.481870 8_1:+9325971 Msa1176970:CDS
TATTGCCTCTACTCCGGCTA+GGG 0.485070 8_1:-9327640 None:intergenic
GAGAATAAACCCGGCCAGAC+GGG 0.491594 8_1:-9328076 None:intergenic
TTTATGACTTTGTGCTGAAG+TGG 0.491647 8_1:+9327703 Msa1176970:CDS
TTGCTGATTGGGCGAGGCAT+CGG 0.492519 8_1:+9325234 Msa1176970:CDS
TCCACATCGCCAACGGTCAC+TGG 0.493627 8_1:+9327908 Msa1176970:CDS
TGACAATGATGAACCCAACC+TGG 0.493819 8_1:+9326545 Msa1176970:CDS
GCTTGGTTATATCCTTGTAT+CGG 0.494386 8_1:-9327173 None:intergenic
GAAGATATCAAGAAAGAAAA+CGG 0.502474 8_1:+9325269 Msa1176970:CDS
TACAGAAGAAGCTGCTCTCA+TGG 0.502881 8_1:+9326909 Msa1176970:intron
TTCATCCAAGCTTGTCCTTG+AGG 0.503077 8_1:+9327863 Msa1176970:CDS
CTATCTAGACAATGTGCACT+AGG 0.503311 8_1:+9328641 Msa1176970:three_prime_UTR
TTTATTATCTAGATTATGCA+TGG 0.505033 8_1:+9328708 Msa1176970:three_prime_UTR
CAGCATCTTCTGATGCAACC+TGG 0.506247 8_1:-9327680 None:intergenic
TTACAGAACAGTATTAGAAA+AGG 0.506404 8_1:-9328590 None:intergenic
GAGGATTCGACATCTAAAAC+AGG 0.508105 8_1:-9328480 None:intergenic
CCTCGCCCAATCAGCAATAG+AGG 0.508375 8_1:-9325228 None:intergenic
TAGAGCCTCAAGGACAAGCT+TGG 0.509349 8_1:-9327868 None:intergenic
TACGGTGATGGAATCTGAAT+GGG 0.512220 8_1:+9325076 Msa1176970:CDS
TTGCTAACAAACTCCTCTGT+TGG 0.513889 8_1:-9328254 None:intergenic
AGAGTAATCCATGCCCAGGT+TGG 0.514979 8_1:-9326559 None:intergenic
GTTGGAAATTGAAACGAAGT+GGG 0.517470 8_1:-9324960 None:intergenic
ATCAAAACATCCAGCAAACC+AGG 0.518936 8_1:-9326979 None:intergenic
GCCACACAATCATCCATGTC+AGG 0.519496 8_1:-9325957 None:intergenic
GACCTTCTTAAGCTTTCGGC+AGG 0.520979 8_1:-9327811 None:intergenic
TTACGGTGATGGAATCTGAA+TGG 0.521064 8_1:+9325075 Msa1176970:CDS
CTTCAGCTGCCAGTGACCGT+TGG 0.521484 8_1:-9327917 None:intergenic
TACCAGAAGCATTAATTCTG+AGG 0.521501 8_1:-9326794 None:intergenic
AATTAGAGAGACAGAGAAGA+GGG 0.522736 8_1:-9325006 None:intergenic
GTTATGAACTTGCCCCTAGC+CGG 0.523090 8_1:+9327627 Msa1176970:CDS
ATTATCTAGTGATGATCTCC+AGG 0.523124 8_1:+9327662 Msa1176970:CDS
TTCACAGGTGGCAAGGCTGT+TGG 0.524034 8_1:+9328296 Msa1176970:CDS
TAATCTAGATAATAAAATCA+TGG 0.524817 8_1:-9328701 None:intergenic
TATGACCAGGTTCCAGGATG+AGG 0.526199 8_1:+9327605 Msa1176970:intron
AATATGCCCAAGGGTAATGA+AGG 0.527195 8_1:+9328847 Msa1176970:three_prime_UTR
CCTCTATTGCTGATTGGGCG+AGG 0.527454 8_1:+9325228 Msa1176970:CDS
GAAGATAGGCGAGAAGTCCT+AGG 0.528020 8_1:+9327750 Msa1176970:CDS
GATCGGAGAACTGATATGTA+AGG 0.529027 8_1:-9326607 None:intergenic
TGCTCTACCTTATAGAAGAA+CGG 0.531664 8_1:-9326645 None:intergenic
CTGCAAAAGAACCAAATTGT+GGG 0.536528 8_1:-9328775 None:intergenic
AGACACTAGATGGCAGCTCC+AGG 0.539810 8_1:-9327095 None:intergenic
ATCGTGCAAGCCGCGAGCCT+AGG 0.541327 8_1:-9327767 None:intergenic
TCTCAGGCATTTCACTTGGG+TGG 0.543562 8_1:+9328095 Msa1176970:CDS
ATATTGCCTCTACTCCGGCT+AGG 0.544346 8_1:-9327641 None:intergenic
GGTTGGAAATTGAAACGAAG+TGG 0.547949 8_1:-9324961 None:intergenic
TGATGAACCCAACCTGGGCA+TGG 0.549556 8_1:+9326551 Msa1176970:CDS
TATTCTCAGGCATTTCACTT+GGG 0.551671 8_1:+9328092 Msa1176970:CDS
GTATCTTGCTAGCCGATACA+AGG 0.552442 8_1:+9327161 Msa1176970:CDS
ACCAGAAGCATTAATTCTGA+GGG 0.556125 8_1:-9326793 None:intergenic
TTATGACTTTGTGCTGAAGT+GGG 0.557998 8_1:+9327704 Msa1176970:CDS
TTGAGCATTAAGACAGCACC+TGG 0.559659 8_1:+9326961 Msa1176970:CDS
ATCATGTTCAAAGTCACTAC+AGG 0.559974 8_1:-9327838 None:intergenic
AAACGACGGCTCGAGCAAGC+AGG 0.559982 8_1:-9327942 None:intergenic
CCTGCAAAAGAACCAAATTG+TGG 0.561130 8_1:-9328776 None:intergenic
AAAGGCAATTACACATTCAC+AGG 0.562583 8_1:+9328281 Msa1176970:CDS
GGAGGAAGAAGTTGTTGCAA+TGG 0.563065 8_1:+9325992 Msa1176970:CDS
GCAAGTTCATAACCTCATCC+TGG 0.563800 8_1:-9327617 None:intergenic
CACAATCATCCATGTCAGGT+TGG 0.565888 8_1:-9325953 None:intergenic
AGATAATATTGCCTCTACTC+CGG 0.566343 8_1:-9327646 None:intergenic
CGAGCCGTCGTTTCTTGGAG+AGG 0.567112 8_1:+9327952 Msa1176970:CDS
TATACTACACACTGCTGGCG+TGG 0.568228 8_1:-9328017 None:intergenic
GAATGGGAACCAACCTGACA+TGG 0.568779 8_1:+9325944 Msa1176970:CDS
TCAGCCATGAACGAAGTCCA+TGG 0.573234 8_1:-9328341 None:intergenic
AGTATATTTGGATCTAAAGC+GGG 0.573614 8_1:+9328034 Msa1176970:CDS
GAGAGACAGAGAAGAGGGAA+CGG 0.578263 8_1:-9325001 None:intergenic
GAGCCGTCGTTTCTTGGAGA+GGG 0.580650 8_1:+9327953 Msa1176970:CDS
CATGCATGAGATATTGTAGT+CGG 0.582698 8_1:+9327028 Msa1176970:CDS
CATTTCACTTGGGTGGACAA+GGG 0.583090 8_1:+9328102 Msa1176970:CDS
CTTGCCCCTAGCCGGAGTAG+AGG 0.585158 8_1:+9327635 Msa1176970:CDS
GTTCAGAGTAATCCATGCCC+AGG 0.587746 8_1:-9326563 None:intergenic
GTTTGAACAAAATATGCCCA+AGG 0.587790 8_1:+9328837 Msa1176970:three_prime_UTR
AAATTAGAGAGACAGAGAAG+AGG 0.587856 8_1:-9325007 None:intergenic
CCAAATATACTACACACTGC+TGG 0.588348 8_1:-9328022 None:intergenic
GGCAGGTCATATGAGGGAAG+CGG 0.590638 8_1:-9327794 None:intergenic
TCTGTCAGCACATTGTAACA+TGG 0.590755 8_1:+9328130 Msa1176970:CDS
GGGCGAGGCATCGGAAGAGG+AGG 0.590870 8_1:+9325243 Msa1176970:CDS
TATTGTTGCATGAAATCGAA+AGG 0.591787 8_1:+9328668 Msa1176970:three_prime_UTR
ATGGAATCTGAATGGGCTCA+CGG 0.594315 8_1:+9325083 Msa1176970:CDS
GATGAGGCTGTAAATGACTT+AGG 0.595768 8_1:+9326411 Msa1176970:CDS
GATGAGGCTGTAAATGACTT+AGG 0.595768 8_1:+9326435 Msa1176970:CDS
TTACACATTCACAGGTGGCA+AGG 0.596424 8_1:+9328289 Msa1176970:CDS
GCCAGTGACCGTTGGCGATG+TGG 0.596471 8_1:-9327909 None:intergenic
GACCTGCCGAAAGCTTAAGA+AGG 0.596935 8_1:+9327809 Msa1176970:CDS
ATATTAAACACTACTACAGA+AGG 0.598616 8_1:-9328618 None:intergenic
TGAGAATAAACCCGGCCAGA+CGG 0.599156 8_1:-9328077 None:intergenic
TCACTGTCTGATGGTGAGCT+CGG 0.599457 8_1:-9328405 None:intergenic
AATTAAGATAATACCAGAAG+GGG 0.600741 8_1:-9326024 None:intergenic
TAACACAACAATATCACAGA+AGG 0.600827 8_1:-9328562 None:intergenic
AGCAAATCCGAAATCGGCGT+CGG 0.603564 8_1:-9325117 None:intergenic
GACAATGATGAACCCAACCT+GGG 0.609287 8_1:+9326546 Msa1176970:CDS
CAATTAAGATAATACCAGAA+GGG 0.610310 8_1:-9326025 None:intergenic
GAAATGCCTGAGAATAAACC+CGG 0.615264 8_1:-9328085 None:intergenic
GCATGTGTGTCACTGTCTGA+TGG 0.616189 8_1:-9328414 None:intergenic
TAATGGCGTTCTACACCTAA+GGG 0.616553 8_1:+9328382 Msa1176970:CDS
TAGTATATTTGGATCTAAAG+CGG 0.623586 8_1:+9328033 Msa1176970:CDS
ATACAAATATCGTCCTGTCA+AGG 0.628696 8_1:+9327977 Msa1176970:CDS
AGGTTGAGGATCAACTGGAT+CGG 0.629008 8_1:-9325189 None:intergenic
ACCTGACATGGATGATTGTG+TGG 0.633757 8_1:+9325956 Msa1176970:CDS
ATTGCCTCTACTCCGGCTAG+GGG 0.635190 8_1:-9327639 None:intergenic
CAGAGGTTCCACATCGCCAA+CGG 0.635240 8_1:+9327901 Msa1176970:CDS
GAACAATATTACAACAGATG+AGG 0.641060 8_1:-9328499 None:intergenic
GGCAATTACACATTCACAGG+TGG 0.644944 8_1:+9328284 Msa1176970:CDS
TTTGAACAAAATATGCCCAA+GGG 0.646897 8_1:+9328838 Msa1176970:three_prime_UTR
TGTAAATGACTTAGGTGATG+AGG 0.647837 8_1:+9326419 Msa1176970:CDS
TGTAAATGACTTAGGTGATG+AGG 0.647837 8_1:+9326443 Msa1176970:CDS
GCTTTCGGCAGGTCATATGA+GGG 0.650096 8_1:-9327800 None:intergenic
GGCAAGGTCAAGACCAACAG+AGG 0.655375 8_1:+9328241 Msa1176970:CDS
CAAATATCGTCCTGTCAAGG+TGG 0.658225 8_1:+9327980 Msa1176970:CDS
GAGTTTGTTAGCAAATACAA+AGG 0.660955 8_1:+9328263 Msa1176970:CDS
ATCAGACAGTGACACACATG+CGG 0.661177 8_1:+9328416 Msa1176970:exon
TGGACTATGAATTTGCGGCA+AGG 0.662962 8_1:+9328225 Msa1176970:CDS
AAATGTTAACCTAGGTGATG+AGG 0.670184 8_1:+9326395 Msa1176970:intron
ATATTTGGATCTAAAGCGGG+AGG 0.670761 8_1:+9328037 Msa1176970:CDS
AAATGTTAACATAGGTGATG+AGG 0.675883 8_1:+9326515 Msa1176970:CDS
AAGTGGGCTAGACACCAGTA+CGG 0.677973 8_1:+9327720 Msa1176970:CDS
GGCGAGAAGTCCTAGGCTCG+CGG 0.680972 8_1:+9327757 Msa1176970:CDS
CGTAACCGGATCAAACAGAT+CGG 0.681842 8_1:-9325057 None:intergenic
ATGCCCTCTCCAAGAAACGA+CGG 0.688090 8_1:-9327956 None:intergenic
TGTGGCTTCTGAAAATCAGG+AGG 0.690006 8_1:+9325974 Msa1176970:CDS
AGTTCAACCACTAACTGATG+CGG 0.693530 8_1:+9327131 Msa1176970:CDS
GGGATCAGTGAGCTTCACTG+TGG 0.699432 8_1:+9328205 Msa1176970:CDS
GTGCCATATTATGCACATGT+GGG 0.714065 8_1:-9328812 None:intergenic
TGTGCCATATTATGCACATG+TGG 0.720831 8_1:-9328813 None:intergenic
GAATCTGAATGGGCTCACGG+TGG 0.756336 8_1:+9325086 Msa1176970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTTTTTTAATGAT+AGG + chr8_1:9325365-9325384 Msa1176970:intron 10.0%
!! AATTGTTTATTTATTTATTG+TGG + chr8_1:9325448-9325467 Msa1176970:intron 10.0%
!! ATTGTTTATTTATTTATTGT+GGG + chr8_1:9325449-9325468 Msa1176970:intron 10.0%
!!! ACAAATTTTTGTTATTACAA+CGG + chr8_1:9324904-9324923 Msa1176970:five_prime_UTR 15.0%
!!! TTTCATTTTTGTTGAATAAT+TGG + chr8_1:9325309-9325328 Msa1176970:intron 15.0%
!!! AATAATTGGATTTTTTGTTA+TGG + chr8_1:9325323-9325342 Msa1176970:intron 15.0%
!!! ATAATTGGATTTTTTGTTAT+GGG + chr8_1:9325324-9325343 Msa1176970:intron 15.0%
!!! AAAATTGAAATTTTTGTTGA+TGG + chr8_1:9325405-9325424 Msa1176970:intron 15.0%
!!! AAATTGAAATTTTTGTTGAT+GGG + chr8_1:9325406-9325425 Msa1176970:intron 15.0%
!! TAATTATGGGTTTATTTATT+AGG + chr8_1:9325503-9325522 Msa1176970:intron 15.0%
!! AATTATGGGTTTATTTATTA+GGG + chr8_1:9325504-9325523 Msa1176970:intron 15.0%
!! TAATCTAGATAATAAAATCA+TGG - chr8_1:9328704-9328723 None:intergenic 15.0%
!! TTTGTTTCAATATATGTTTG+AGG - chr8_1:9324889-9324908 None:intergenic 20.0%
!! AATTTATTCTTCATTCATGA+AGG + chr8_1:9325025-9325044 Msa1176970:exon 20.0%
!!! TGATTTTTTTAATGATAGGT+TGG + chr8_1:9325369-9325388 Msa1176970:intron 20.0%
!! TTTATTTATTTATTGTGGGT+TGG + chr8_1:9325453-9325472 Msa1176970:intron 20.0%
!!! TTAGATTTGTTGATGTTTTT+AGG + chr8_1:9325568-9325587 Msa1176970:intron 20.0%
!! AGACTATTTGAAGAAAAAAT+TGG + chr8_1:9325601-9325620 Msa1176970:intron 20.0%
!! TATTTGAAGAAAAAATTGGT+TGG + chr8_1:9325605-9325624 Msa1176970:intron 20.0%
!! ACCAAATGTAAATATAAATC+TGG + chr8_1:9325673-9325692 Msa1176970:intron 20.0%
!! CCAAATGTAAATATAAATCT+GGG + chr8_1:9325674-9325693 Msa1176970:intron 20.0%
!! CAAATGTAAATATAAATCTG+GGG + chr8_1:9325675-9325694 Msa1176970:intron 20.0%
!!! GATTTTGAAAATGTTAACAT+AGG + chr8_1:9326507-9326526 Msa1176970:CDS 20.0%
!! GCAATAAAAAGATTACAAAT+TGG - chr8_1:9328445-9328464 None:intergenic 20.0%
!! TTTATTATCTAGATTATGCA+TGG + chr8_1:9328708-9328727 Msa1176970:three_prime_UTR 20.0%
! ATGATAGTAATTTCTCTGAT+AGG + chr8_1:9325144-9325163 Msa1176970:CDS 25.0%
! TGATAGTAATTTCTCTGATA+GGG + chr8_1:9325145-9325164 Msa1176970:CDS 25.0%
! GAAGATATCAAGAAAGAAAA+CGG + chr8_1:9325269-9325288 Msa1176970:CDS 25.0%
!! AAAACGGTATTTTTCTATCT+AGG + chr8_1:9325285-9325304 Msa1176970:intron 25.0%
! GTTTATTTATTAGGGTTTCT+AGG + chr8_1:9325512-9325531 Msa1176970:intron 25.0%
!! TCAGTGTTGAAAATGAAAAT+AGG + chr8_1:9325539-9325558 Msa1176970:intron 25.0%
! TGTTGAAAATGAAAATAGGT+TGG + chr8_1:9325543-9325562 Msa1176970:intron 25.0%
!! TTGTGTATGTTTTCTGTTAA+TGG + chr8_1:9325644-9325663 Msa1176970:intron 25.0%
!! TGTGTATGTTTTCTGTTAAT+GGG + chr8_1:9325645-9325664 Msa1176970:intron 25.0%
! CCCAGATTTATATTTACATT+TGG - chr8_1:9325677-9325696 None:intergenic 25.0%
! AATTTGAAAGTGATTGTTAC+TGG + chr8_1:9325737-9325756 Msa1176970:intron 25.0%
! ATTTGAAAGTGATTGTTACT+GGG + chr8_1:9325738-9325757 Msa1176970:intron 25.0%
!!! AAAAAGCTTGGTTCTTTTAA+TGG + chr8_1:9325775-9325794 Msa1176970:intron 25.0%
!!! TGTGATATTTTTGTGTATGT+TGG + chr8_1:9325816-9325835 Msa1176970:intron 25.0%
! AATTAAGATAATACCAGAAG+GGG - chr8_1:9326027-9326046 None:intergenic 25.0%
! CAATTAAGATAATACCAGAA+GGG - chr8_1:9326028-9326047 None:intergenic 25.0%
! TACTTGAGTTATTACTTGTT+AGG + chr8_1:9326053-9326072 Msa1176970:intron 25.0%
! CATGAAATATATAAACAACG+GGG - chr8_1:9326113-9326132 None:intergenic 25.0%
! GCATGAAATATATAAACAAC+GGG - chr8_1:9326114-9326133 None:intergenic 25.0%
! GGCATGAAATATATAAACAA+CGG - chr8_1:9326115-9326134 None:intergenic 25.0%
!! AGTAAGTTCTTCTTTTATAG+TGG + chr8_1:9326168-9326187 Msa1176970:intron 25.0%
!! GTAAGTTCTTCTTTTATAGT+GGG + chr8_1:9326169-9326188 Msa1176970:intron 25.0%
!! TAAGTTCTTCTTTTATAGTG+GGG + chr8_1:9326170-9326189 Msa1176970:intron 25.0%
! ACTATCGATATATGAAATGA+GGG + chr8_1:9326242-9326261 Msa1176970:intron 25.0%
!! AATGAGGGTATAATTTACTA+AGG + chr8_1:9326257-9326276 Msa1176970:intron 25.0%
!!! GATTTTGAAAATGTTAACCT+AGG + chr8_1:9326387-9326406 Msa1176970:intron 25.0%
!! CTGCTAAGAAAACATATTTT+TGG - chr8_1:9326710-9326729 None:intergenic 25.0%
! TGAGGGTAAATTAAATGATA+AGG - chr8_1:9326852-9326871 None:intergenic 25.0%
! TGAAGCAACTTCAAATTTAT+CGG - chr8_1:9327010-9327029 None:intergenic 25.0%
! AAAAAAAACAAACACTTGCT+TGG - chr8_1:9327193-9327212 None:intergenic 25.0%
!!! TTTTTTCTCTTCTAGCAATT+CGG + chr8_1:9327263-9327282 Msa1176970:intron 25.0%
!!! ATTTTAGAGAACTCTATTGT+TGG + chr8_1:9327419-9327438 Msa1176970:intron 25.0%
! ATGGAAAGTTAGAATCAATA+AGG - chr8_1:9327490-9327509 None:intergenic 25.0%
!!! CATGTGTTTTTTCTAAAGAA+TGG - chr8_1:9327509-9327528 None:intergenic 25.0%
! TAGTATATTTGGATCTAAAG+CGG + chr8_1:9328033-9328052 Msa1176970:CDS 25.0%
! GATTGTCTTTACTTCATTAA+TGG + chr8_1:9328365-9328384 Msa1176970:CDS 25.0%
!! TGTAATCTTTTTATTGCAGT+TGG + chr8_1:9328448-9328467 Msa1176970:three_prime_UTR 25.0%
! TTACAGAACAGTATTAGAAA+AGG - chr8_1:9328593-9328612 None:intergenic 25.0%
! ATATTAAACACTACTACAGA+AGG - chr8_1:9328621-9328640 None:intergenic 25.0%
TCAATTTCCAACCTTATCTT+AGG + chr8_1:9324971-9324990 Msa1176970:five_prime_UTR 30.0%
CAATTTCCAACCTTATCTTA+GGG + chr8_1:9324972-9324991 Msa1176970:five_prime_UTR 30.0%
AAAAAACCCTAAGATAAGGT+TGG - chr8_1:9324981-9325000 None:intergenic 30.0%
ATTGAAAGCAAATCCGAAAT+CGG - chr8_1:9325126-9325145 None:intergenic 30.0%
TGAAGAAAAAATTGGTTGGA+AGG + chr8_1:9325609-9325628 Msa1176970:intron 30.0%
GAAGAAAAAATTGGTTGGAA+GGG + chr8_1:9325610-9325629 Msa1176970:intron 30.0%
!!! CAAGCTTTTTTCTGTAACTT+TGG - chr8_1:9325765-9325784 None:intergenic 30.0%
CAAAGTTACAGAAAAAAGCT+TGG + chr8_1:9325763-9325782 Msa1176970:intron 30.0%
CGTTGTAACCTGATATTATA+TGG + chr8_1:9325879-9325898 Msa1176970:intron 30.0%
ACAGAAGACCATATAATATC+AGG - chr8_1:9325890-9325909 None:intergenic 30.0%
GCAATTAAGATAATACCAGA+AGG - chr8_1:9326029-9326048 None:intergenic 30.0%
AAATGGAAGATACAAACAGA+GGG - chr8_1:9326137-9326156 None:intergenic 30.0%
AGTGATGATCTTCAAAATCA+TGG - chr8_1:9326225-9326244 None:intergenic 30.0%
CACTATCGATATATGAAATG+AGG + chr8_1:9326241-9326260 Msa1176970:intron 30.0%
AAATGTTAACATAGGTGATG+AGG + chr8_1:9326515-9326534 Msa1176970:CDS 30.0%
!!! TTTTGCAGCTTTTTTCGAAT+GGG + chr8_1:9326742-9326761 Msa1176970:intron 30.0%
! AAAAGAAGTATACCACGTTT+AGG - chr8_1:9326883-9326902 None:intergenic 30.0%
! TTTTTCTCTTCTAGCAATTC+GGG + chr8_1:9327264-9327283 Msa1176970:intron 30.0%
! TGTATTTGTGTGTGTTTTGT+TGG + chr8_1:9327324-9327343 Msa1176970:intron 30.0%
!! GTATTTGTGTGTGTTTTGTT+GGG + chr8_1:9327325-9327344 Msa1176970:intron 30.0%
! GTTGGAACTCTATCTTTTTA+TGG + chr8_1:9327355-9327374 Msa1176970:intron 30.0%
! GAACTCTATCTTTTTATGGA+CGG + chr8_1:9327359-9327378 Msa1176970:intron 30.0%
! AACTCTATCTTTTTATGGAC+GGG + chr8_1:9327360-9327379 Msa1176970:intron 30.0%
! TCTTGAAAGACTTTTTGTCA+TGG - chr8_1:9327448-9327467 None:intergenic 30.0%
TATACATCATGTATATGACC+AGG + chr8_1:9327592-9327611 Msa1176970:intron 30.0%
TTAAGACCTTCTTAAGCTTT+CGG - chr8_1:9327818-9327837 None:intergenic 30.0%
! AGTATATTTGGATCTAAAGC+GGG + chr8_1:9328034-9328053 Msa1176970:CDS 30.0%
AAAGTTCTTTCCATTGCTTT+GGG + chr8_1:9328159-9328178 Msa1176970:CDS 30.0%
!! GAGTTTGTTAGCAAATACAA+AGG + chr8_1:9328263-9328282 Msa1176970:CDS 30.0%
GAACAATATTACAACAGATG+AGG - chr8_1:9328502-9328521 None:intergenic 30.0%
! TTCTGTCAATGTCTTCTTTT+GGG + chr8_1:9328519-9328538 Msa1176970:three_prime_UTR 30.0%
TAACACAACAATATCACAGA+AGG - chr8_1:9328565-9328584 None:intergenic 30.0%
TATTGTTGCATGAAATCGAA+AGG + chr8_1:9328668-9328687 Msa1176970:three_prime_UTR 30.0%
ATGAAATCGAAAGGATAGTT+AGG + chr8_1:9328677-9328696 Msa1176970:three_prime_UTR 30.0%
TTTGAACAAAATATGCCCAA+GGG + chr8_1:9328838-9328857 Msa1176970:three_prime_UTR 30.0%
GTTGGAAATTGAAACGAAGT+GGG - chr8_1:9324963-9324982 None:intergenic 35.0%
ACGGAAAAAACCCTAAGATA+AGG - chr8_1:9324985-9325004 None:intergenic 35.0%
AATTAGAGAGACAGAGAAGA+GGG - chr8_1:9325009-9325028 None:intergenic 35.0%
AAATTAGAGAGACAGAGAAG+AGG - chr8_1:9325010-9325029 None:intergenic 35.0%
! ATTTCTCTGATAGGGTTTTG+AGG + chr8_1:9325153-9325172 Msa1176970:CDS 35.0%
!!! GGTTTTGAGGATTGAAATCA+TGG + chr8_1:9325166-9325185 Msa1176970:CDS 35.0%
!! CAATTTTCAGAATCAGGTTG+AGG - chr8_1:9325206-9325225 None:intergenic 35.0%
! GAGGTACAATTTTCAGAATC+AGG - chr8_1:9325212-9325231 None:intergenic 35.0%
ATTGTACCTCTATTGCTGAT+TGG + chr8_1:9325222-9325241 Msa1176970:CDS 35.0%
! TTGTACCTCTATTGCTGATT+GGG + chr8_1:9325223-9325242 Msa1176970:CDS 35.0%
GTAAATATAAATCTGGGGAG+TGG + chr8_1:9325680-9325699 Msa1176970:intron 35.0%
!! AGCTTGGTTCTTTTAATGGA+TGG + chr8_1:9325779-9325798 Msa1176970:intron 35.0%
!! TCTTTTAATGGATGGATGCT+TGG + chr8_1:9325787-9325806 Msa1176970:intron 35.0%
!! CTTTTAATGGATGGATGCTT+GGG + chr8_1:9325788-9325807 Msa1176970:intron 35.0%
! CAGATGAGCAGATTTTGAAT+GGG + chr8_1:9325928-9325947 Msa1176970:CDS 35.0%
ATATAAACAACGGGGCAATA+GGG - chr8_1:9326105-9326124 None:intergenic 35.0%
TATATAAACAACGGGGCAAT+AGG - chr8_1:9326106-9326125 None:intergenic 35.0%
AATGGAAGATACAAACAGAG+GGG - chr8_1:9326136-9326155 None:intergenic 35.0%
GAAATGGAAGATACAAACAG+AGG - chr8_1:9326138-9326157 None:intergenic 35.0%
CTTACTATGCAGCAATGAAA+TGG - chr8_1:9326154-9326173 None:intergenic 35.0%
TATTGTCCTTTGCTTGTAAG+TGG + chr8_1:9326306-9326325 Msa1176970:intron 35.0%
ATTGTCCTTTGCTTGTAAGT+GGG + chr8_1:9326307-9326326 Msa1176970:intron 35.0%
! TTTTTCCCACTTACAAGCAA+AGG - chr8_1:9326315-9326334 None:intergenic 35.0%
AAATGTTAACCTAGGTGATG+AGG + chr8_1:9326395-9326414 Msa1176970:intron 35.0%
TGTAAATGACTTAGGTGATG+AGG + chr8_1:9326419-9326438 Msa1176970:CDS 35.0%
TGTAAATGACTTAGGTGATG+AGG + chr8_1:9326419-9326438 Msa1176970:CDS 35.0%
!!! GTTTTAACTCTAACAACTGC+AGG - chr8_1:9326588-9326607 None:intergenic 35.0%
TAAAAGCCCGTTCTTCTATA+AGG + chr8_1:9326638-9326657 Msa1176970:CDS 35.0%
TGCTCTACCTTATAGAAGAA+CGG - chr8_1:9326648-9326667 None:intergenic 35.0%
CATTCGAAAAAAGCTGCAAA+AGG - chr8_1:9326743-9326762 None:intergenic 35.0%
!!! CTTTTGCAGCTTTTTTCGAA+TGG + chr8_1:9326741-9326760 Msa1176970:intron 35.0%
!! ACCAGAAGCATTAATTCTGA+GGG - chr8_1:9326796-9326815 None:intergenic 35.0%
!! TACCAGAAGCATTAATTCTG+AGG - chr8_1:9326797-9326816 None:intergenic 35.0%
ACGTTTAGGTGACTATTTGA+GGG - chr8_1:9326869-9326888 None:intergenic 35.0%
CATGCATGAGATATTGTAGT+CGG + chr8_1:9327028-9327047 Msa1176970:CDS 35.0%
GCTTGGTTATATCCTTGTAT+CGG - chr8_1:9327176-9327195 None:intergenic 35.0%
! TTTTCTCTTCTAGCAATTCG+GGG + chr8_1:9327265-9327284 Msa1176970:intron 35.0%
!! GTTTTGTTGGGTCTAATTGT+TGG + chr8_1:9327337-9327356 Msa1176970:intron 35.0%
AGATAATATTGCCTCTACTC+CGG - chr8_1:9327649-9327668 None:intergenic 35.0%
ATTATCTAGTGATGATCTCC+AGG + chr8_1:9327662-9327681 Msa1176970:CDS 35.0%
TTTATGACTTTGTGCTGAAG+TGG + chr8_1:9327703-9327722 Msa1176970:CDS 35.0%
TTATGACTTTGTGCTGAAGT+GGG + chr8_1:9327704-9327723 Msa1176970:CDS 35.0%
ATCATGTTCAAAGTCACTAC+AGG - chr8_1:9327841-9327860 None:intergenic 35.0%
ATACAAATATCGTCCTGTCA+AGG + chr8_1:9327977-9327996 Msa1176970:CDS 35.0%
TTATTCTCAGGCATTTCACT+TGG + chr8_1:9328091-9328110 Msa1176970:CDS 35.0%
TATTCTCAGGCATTTCACTT+GGG + chr8_1:9328092-9328111 Msa1176970:CDS 35.0%
CAAAGTTCTTTCCATTGCTT+TGG + chr8_1:9328158-9328177 Msa1176970:CDS 35.0%
!! TTTTTGGGAATGCAGGAAAA+GGG + chr8_1:9328185-9328204 Msa1176970:CDS 35.0%
AAAGGCAATTACACATTCAC+AGG + chr8_1:9328281-9328300 Msa1176970:CDS 35.0%
! GTTCTGTCAATGTCTTCTTT+TGG + chr8_1:9328518-9328537 Msa1176970:three_prime_UTR 35.0%
! TCTGTCAATGTCTTCTTTTG+GGG + chr8_1:9328520-9328539 Msa1176970:three_prime_UTR 35.0%
GATTATGCATGGAGTTATCT+AGG + chr8_1:9328719-9328738 Msa1176970:three_prime_UTR 35.0%
CTGCAAAAGAACCAAATTGT+GGG - chr8_1:9328778-9328797 None:intergenic 35.0%
!!! CACAATTTGGTTCTTTTGCA+GGG + chr8_1:9328777-9328796 Msa1176970:three_prime_UTR 35.0%
GTTTGAACAAAATATGCCCA+AGG + chr8_1:9328837-9328856 Msa1176970:three_prime_UTR 35.0%
GGTTGGAAATTGAAACGAAG+TGG - chr8_1:9324964-9324983 None:intergenic 40.0%
GAATTCCGATCTGTTTGATC+CGG + chr8_1:9325052-9325071 Msa1176970:CDS 40.0%
!! TTACGGTGATGGAATCTGAA+TGG + chr8_1:9325075-9325094 Msa1176970:CDS 40.0%
!! TACGGTGATGGAATCTGAAT+GGG + chr8_1:9325076-9325095 Msa1176970:CDS 40.0%
TATGGTCTTCTGTTTGCAGT+TGG + chr8_1:9325897-9325916 Msa1176970:intron 40.0%
ATGGTCTTCTGTTTGCAGTT+GGG + chr8_1:9325898-9325917 Msa1176970:intron 40.0%
CCATTCAAAATCTGCTCATC+TGG - chr8_1:9325930-9325949 None:intergenic 40.0%
! CCAGATGAGCAGATTTTGAA+TGG + chr8_1:9325927-9325946 Msa1176970:CDS 40.0%
! TTGTGTGGCTTCTGAAAATC+AGG + chr8_1:9325971-9325990 Msa1176970:CDS 40.0%
TATAAACAACGGGGCAATAG+GGG - chr8_1:9326104-9326123 None:intergenic 40.0%
GATGAGGCTGTAAATGACTT+AGG + chr8_1:9326411-9326430 Msa1176970:CDS 40.0%
GATGAGGCTGTAAATGACTT+AGG + chr8_1:9326411-9326430 Msa1176970:CDS 40.0%
GATCGGAGAACTGATATGTA+AGG - chr8_1:9326610-9326629 None:intergenic 40.0%
ACATATCAGTTCTCCGATCT+TGG + chr8_1:9326611-9326630 Msa1176970:CDS 40.0%
GCTCTACCTTATAGAAGAAC+GGG - chr8_1:9326647-9326666 None:intergenic 40.0%
!!! AGCTTTTTTCGAATGGGATG+AGG + chr8_1:9326748-9326767 Msa1176970:intron 40.0%
!!! GCTTTTTTCGAATGGGATGA+GGG + chr8_1:9326749-9326768 Msa1176970:intron 40.0%
ACCCTCAGAATTAATGCTTC+TGG + chr8_1:9326792-9326811 Msa1176970:CDS 40.0%
CACGTTTAGGTGACTATTTG+AGG - chr8_1:9326870-9326889 None:intergenic 40.0%
CTCAAATAGTCACCTAAACG+TGG + chr8_1:9326868-9326887 Msa1176970:intron 40.0%
ATCAAAACATCCAGCAAACC+AGG - chr8_1:9326982-9327001 None:intergenic 40.0%
!!! TGGTTTGCTGGATGTTTTGA+TGG + chr8_1:9326981-9327000 Msa1176970:CDS 40.0%
AGGTAAAGCAATGCAGATTC+AGG - chr8_1:9327078-9327097 None:intergenic 40.0%
TGAATCTGCATTGCTTTACC+TGG + chr8_1:9327077-9327096 Msa1176970:CDS 40.0%
TCAGCCATTAAGACACTAGA+TGG - chr8_1:9327108-9327127 None:intergenic 40.0%
AGTTCAACCACTAACTGATG+CGG + chr8_1:9327131-9327150 Msa1176970:CDS 40.0%
CCTTGAAAAATAGAGCCTCA+AGG - chr8_1:9327881-9327900 None:intergenic 40.0%
!! CCTTGAGGCTCTATTTTTCA+AGG + chr8_1:9327878-9327897 Msa1176970:CDS 40.0%
TCAAATTCAACCACCTTGAC+AGG - chr8_1:9327993-9328012 None:intergenic 40.0%
CCAAATATACTACACACTGC+TGG - chr8_1:9328025-9328044 None:intergenic 40.0%
CCAGCAGTGTGTAGTATATT+TGG + chr8_1:9328022-9328041 Msa1176970:CDS 40.0%
! ATATTTGGATCTAAAGCGGG+AGG + chr8_1:9328037-9328056 Msa1176970:CDS 40.0%
GAAATGCCTGAGAATAAACC+CGG - chr8_1:9328088-9328107 None:intergenic 40.0%
TCTGTCAGCACATTGTAACA+TGG + chr8_1:9328130-9328149 Msa1176970:CDS 40.0%
!!! CATTGCTTTGGGCTGTTTTT+GGG + chr8_1:9328170-9328189 Msa1176970:CDS 40.0%
!! GTTTTTGGGAATGCAGGAAA+AGG + chr8_1:9328184-9328203 Msa1176970:CDS 40.0%
! CACTGTGGACTATGAATTTG+CGG + chr8_1:9328220-9328239 Msa1176970:CDS 40.0%
TTGCTAACAAACTCCTCTGT+TGG - chr8_1:9328257-9328276 None:intergenic 40.0%
! GAAACTTGTTTGCGATTCCA+TGG + chr8_1:9328324-9328343 Msa1176970:CDS 40.0%
TTAATGGCGTTCTACACCTA+AGG + chr8_1:9328381-9328400 Msa1176970:CDS 40.0%
TAATGGCGTTCTACACCTAA+GGG + chr8_1:9328382-9328401 Msa1176970:CDS 40.0%
! GAGGATTCGACATCTAAAAC+AGG - chr8_1:9328483-9328502 None:intergenic 40.0%
CTATCTAGACAATGTGCACT+AGG + chr8_1:9328641-9328660 Msa1176970:three_prime_UTR 40.0%
! CAAAAATGGAAGGCATGTTC+AGG - chr8_1:9328748-9328767 None:intergenic 40.0%
! TTGTGGGCTGATCACAAAAA+TGG - chr8_1:9328762-9328781 None:intergenic 40.0%
TTTGTGATCAGCCCACAATT+TGG + chr8_1:9328764-9328783 Msa1176970:three_prime_UTR 40.0%
CCTGCAAAAGAACCAAATTG+TGG - chr8_1:9328779-9328798 None:intergenic 40.0%
!!! CCACAATTTGGTTCTTTTGC+AGG + chr8_1:9328776-9328795 Msa1176970:three_prime_UTR 40.0%
!!! ATTTGGTTCTTTTGCAGGGT+TGG + chr8_1:9328781-9328800 Msa1176970:three_prime_UTR 40.0%
TGTCCCACATGTGCATAATA+TGG + chr8_1:9328809-9328828 Msa1176970:three_prime_UTR 40.0%
GTGCCATATTATGCACATGT+GGG - chr8_1:9328815-9328834 None:intergenic 40.0%
TGTGCCATATTATGCACATG+TGG - chr8_1:9328816-9328835 None:intergenic 40.0%
CGTAACCGGATCAAACAGAT+CGG - chr8_1:9325060-9325079 None:intergenic 45.0%
CGATCTGTTTGATCCGGTTA+CGG + chr8_1:9325058-9325077 Msa1176970:CDS 45.0%
TCAGATTCCATCACCGTAAC+CGG - chr8_1:9325074-9325093 None:intergenic 45.0%
! ATGGAATCTGAATGGGCTCA+CGG + chr8_1:9325083-9325102 Msa1176970:CDS 45.0%
AGGTTGAGGATCAACTGGAT+CGG - chr8_1:9325192-9325211 None:intergenic 45.0%
!! GAATCAGGTTGAGGATCAAC+TGG - chr8_1:9325197-9325216 None:intergenic 45.0%
! TGGGGAGTGGTGTGATTTTT+GGG + chr8_1:9325693-9325712 Msa1176970:intron 45.0%
TGGTCTTCTGTTTGCAGTTG+GGG + chr8_1:9325899-9325918 Msa1176970:intron 45.0%
CACAATCATCCATGTCAGGT+TGG - chr8_1:9325956-9325975 None:intergenic 45.0%
ACCTGACATGGATGATTGTG+TGG + chr8_1:9325956-9325975 Msa1176970:CDS 45.0%
! TGTGGCTTCTGAAAATCAGG+AGG + chr8_1:9325974-9325993 Msa1176970:CDS 45.0%
GGAGGAAGAAGTTGTTGCAA+TGG + chr8_1:9325992-9326011 Msa1176970:CDS 45.0%
ATGGTTGAAGAATCCCCTTC+TGG + chr8_1:9326011-9326030 Msa1176970:CDS 45.0%
CATTTACAGCCTCATCACCT+AGG - chr8_1:9326407-9326426 None:intergenic 45.0%
TGACAATGATGAACCCAACC+TGG + chr8_1:9326545-9326564 Msa1176970:CDS 45.0%
GACAATGATGAACCCAACCT+GGG + chr8_1:9326546-9326565 Msa1176970:CDS 45.0%
TTCGAATGGGATGAGGGAAT+CGG + chr8_1:9326755-9326774 Msa1176970:CDS 45.0%
TACAGAAGAAGCTGCTCTCA+TGG + chr8_1:9326909-9326928 Msa1176970:intron 45.0%
TTGAGCATTAAGACAGCACC+TGG + chr8_1:9326961-9326980 Msa1176970:CDS 45.0%
GCTGCCATCTAGTGTCTTAA+TGG + chr8_1:9327101-9327120 Msa1176970:CDS 45.0%
GTATCTTGCTAGCCGATACA+AGG + chr8_1:9327161-9327180 Msa1176970:CDS 45.0%
TCTTCTAGCAATTCGGGGTT+GGG + chr8_1:9327270-9327289 Msa1176970:intron 45.0%
CATGTATATGACCAGGTTCC+AGG + chr8_1:9327599-9327618 Msa1176970:intron 45.0%
GCAAGTTCATAACCTCATCC+TGG - chr8_1:9327620-9327639 None:intergenic 45.0%
TATCTTCCAGATTGCCGTAC+TGG - chr8_1:9327737-9327756 None:intergenic 45.0%
AGTACGGCAATCTGGAAGAT+AGG + chr8_1:9327736-9327755 Msa1176970:CDS 45.0%
TTCATCCAAGCTTGTCCTTG+AGG + chr8_1:9327863-9327882 Msa1176970:CDS 45.0%
!!! GGCTCTATTTTTCAAGGCAG+AGG + chr8_1:9327884-9327903 Msa1176970:CDS 45.0%
CAAATATCGTCCTGTCAAGG+TGG + chr8_1:9327980-9327999 Msa1176970:CDS 45.0%
! TGTTCCAATTTGTTCCCGTC+TGG + chr8_1:9328062-9328081 Msa1176970:CDS 45.0%
CATTTCACTTGGGTGGACAA+GGG + chr8_1:9328102-9328121 Msa1176970:CDS 45.0%
CCAAAAACAGCCCAAAGCAA+TGG - chr8_1:9328172-9328191 None:intergenic 45.0%
!! CCATTGCTTTGGGCTGTTTT+TGG + chr8_1:9328169-9328188 Msa1176970:CDS 45.0%
TGGACTATGAATTTGCGGCA+AGG + chr8_1:9328225-9328244 Msa1176970:CDS 45.0%
GGCAATTACACATTCACAGG+TGG + chr8_1:9328284-9328303 Msa1176970:CDS 45.0%
TTACACATTCACAGGTGGCA+AGG + chr8_1:9328289-9328308 Msa1176970:CDS 45.0%
GATTCCATGGACTTCGTTCA+TGG + chr8_1:9328337-9328356 Msa1176970:CDS 45.0%
ATCAGACAGTGACACACATG+CGG + chr8_1:9328416-9328435 Msa1176970:exon 45.0%
GGGCTGATCACAAAAATGGA+AGG - chr8_1:9328758-9328777 None:intergenic 45.0%
!!! AAAATGATTTTTTTTAATTA+TGG + chr8_1:9325489-9325508 Msa1176970:intron 5.0%
!!! AAATGATTTTTTTTAATTAT+GGG + chr8_1:9325490-9325509 Msa1176970:intron 5.0%
GAGAGACAGAGAAGAGGGAA+CGG - chr8_1:9325004-9325023 None:intergenic 50.0%
GTTTGATCCGGTTACGGTGA+TGG + chr8_1:9325064-9325083 Msa1176970:CDS 50.0%
AGCAAATCCGAAATCGGCGT+CGG - chr8_1:9325120-9325139 None:intergenic 50.0%
! CTGGGGAGTGGTGTGATTTT+TGG + chr8_1:9325692-9325711 Msa1176970:intron 50.0%
! GGGGAGTGGTGTGATTTTTG+GGG + chr8_1:9325694-9325713 Msa1176970:intron 50.0%
GAATGGGAACCAACCTGACA+TGG + chr8_1:9325944-9325963 Msa1176970:CDS 50.0%
GCCACACAATCATCCATGTC+AGG - chr8_1:9325960-9325979 None:intergenic 50.0%
GAGTAATCCATGCCCAGGTT+GGG - chr8_1:9326561-9326580 None:intergenic 50.0%
AGAGTAATCCATGCCCAGGT+TGG - chr8_1:9326562-9326581 None:intergenic 50.0%
GTTCAGAGTAATCCATGCCC+AGG - chr8_1:9326566-9326585 None:intergenic 50.0%
! GGGCTTTTAGCAGCCAAGAT+CGG - chr8_1:9326627-9326646 None:intergenic 50.0%
! TAAGACAGCACCTGGTTTGC+TGG + chr8_1:9326969-9326988 Msa1176970:CDS 50.0%
TGCTTTGCCGCATCAGTTAG+TGG - chr8_1:9327141-9327160 None:intergenic 50.0%
CTCTTCTAGCAATTCGGGGT+TGG + chr8_1:9327269-9327288 Msa1176970:intron 50.0%
CTTCTAGCAATTCGGGGTTG+GGG + chr8_1:9327271-9327290 Msa1176970:intron 50.0%
TTCTAGCAATTCGGGGTTGG+GGG + chr8_1:9327272-9327291 Msa1176970:intron 50.0%
TATGACCAGGTTCCAGGATG+AGG + chr8_1:9327605-9327624 Msa1176970:intron 50.0%
CATAACCTCATCCTGGAACC+TGG - chr8_1:9327613-9327632 None:intergenic 50.0%
GTTATGAACTTGCCCCTAGC+CGG + chr8_1:9327627-9327646 Msa1176970:CDS 50.0%
TATTGCCTCTACTCCGGCTA+GGG - chr8_1:9327643-9327662 None:intergenic 50.0%
ATATTGCCTCTACTCCGGCT+AGG - chr8_1:9327644-9327663 None:intergenic 50.0%
CAGCATCTTCTGATGCAACC+TGG - chr8_1:9327683-9327702 None:intergenic 50.0%
!! AAGTGGGCTAGACACCAGTA+CGG + chr8_1:9327720-9327739 Msa1176970:CDS 50.0%
TAGACACCAGTACGGCAATC+TGG + chr8_1:9327728-9327747 Msa1176970:CDS 50.0%
GAAGATAGGCGAGAAGTCCT+AGG + chr8_1:9327750-9327769 Msa1176970:CDS 50.0%
GCTTTCGGCAGGTCATATGA+GGG - chr8_1:9327803-9327822 None:intergenic 50.0%
AGCTTTCGGCAGGTCATATG+AGG - chr8_1:9327804-9327823 None:intergenic 50.0%
GACCTGCCGAAAGCTTAAGA+AGG + chr8_1:9327809-9327828 Msa1176970:CDS 50.0%
GACCTTCTTAAGCTTTCGGC+AGG - chr8_1:9327814-9327833 None:intergenic 50.0%
TAGAGCCTCAAGGACAAGCT+TGG - chr8_1:9327871-9327890 None:intergenic 50.0%
ATGCCCTCTCCAAGAAACGA+CGG - chr8_1:9327959-9327978 None:intergenic 50.0%
TATACTACACACTGCTGGCG+TGG - chr8_1:9328020-9328039 None:intergenic 50.0%
TGAGAATAAACCCGGCCAGA+CGG - chr8_1:9328080-9328099 None:intergenic 50.0%
TCTCAGGCATTTCACTTGGG+TGG + chr8_1:9328095-9328114 Msa1176970:CDS 50.0%
GCATTTCACTTGGGTGGACA+AGG + chr8_1:9328101-9328120 Msa1176970:CDS 50.0%
!!! TGGGCTGTTTTTGGGAATGC+AGG + chr8_1:9328178-9328197 Msa1176970:CDS 50.0%
TCAGCCATGAACGAAGTCCA+TGG - chr8_1:9328344-9328363 None:intergenic 50.0%
ATGGACTTCGTTCATGGCTG+AGG + chr8_1:9328343-9328362 Msa1176970:CDS 50.0%
! TCACTGTCTGATGGTGAGCT+CGG - chr8_1:9328408-9328427 None:intergenic 50.0%
! GCATGTGTGTCACTGTCTGA+TGG - chr8_1:9328417-9328436 None:intergenic 50.0%
! GAATCTGAATGGGCTCACGG+TGG + chr8_1:9325086-9325105 Msa1176970:CDS 55.0%
!! TCTAGCTCCGACGCCGATTT+CGG + chr8_1:9325110-9325129 Msa1176970:CDS 55.0%
CCTCGCCCAATCAGCAATAG+AGG - chr8_1:9325231-9325250 None:intergenic 55.0%
! CCTCTATTGCTGATTGGGCG+AGG + chr8_1:9325228-9325247 Msa1176970:CDS 55.0%
! TTGCTGATTGGGCGAGGCAT+CGG + chr8_1:9325234-9325253 Msa1176970:CDS 55.0%
TGATGAACCCAACCTGGGCA+TGG + chr8_1:9326551-9326570 Msa1176970:CDS 55.0%
AGACACTAGATGGCAGCTCC+AGG - chr8_1:9327098-9327117 None:intergenic 55.0%
TCTAGCAATTCGGGGTTGGG+GGG + chr8_1:9327273-9327292 Msa1176970:intron 55.0%
ATTGCCTCTACTCCGGCTAG+GGG - chr8_1:9327642-9327661 None:intergenic 55.0%
GGCAGGTCATATGAGGGAAG+CGG - chr8_1:9327797-9327816 None:intergenic 55.0%
CAGAGGTTCCACATCGCCAA+CGG + chr8_1:9327901-9327920 Msa1176970:CDS 55.0%
TTGCTCGAGCCGTCGTTTCT+TGG + chr8_1:9327947-9327966 Msa1176970:CDS 55.0%
GAGCCGTCGTTTCTTGGAGA+GGG + chr8_1:9327953-9327972 Msa1176970:CDS 55.0%
! CCAATTTGTTCCCGTCTGGC+CGG + chr8_1:9328066-9328085 Msa1176970:CDS 55.0%
! CAATTTGTTCCCGTCTGGCC+GGG + chr8_1:9328067-9328086 Msa1176970:CDS 55.0%
GAGAATAAACCCGGCCAGAC+GGG - chr8_1:9328079-9328098 None:intergenic 55.0%
GTCTGGCCGGGTTTATTCTC+AGG + chr8_1:9328079-9328098 Msa1176970:CDS 55.0%
GGGATCAGTGAGCTTCACTG+TGG + chr8_1:9328205-9328224 Msa1176970:CDS 55.0%
GGCAAGGTCAAGACCAACAG+AGG + chr8_1:9328241-9328260 Msa1176970:CDS 55.0%
TTCACAGGTGGCAAGGCTGT+TGG + chr8_1:9328296-9328315 Msa1176970:CDS 55.0%
!! ATTGGGCGAGGCATCGGAAG+AGG + chr8_1:9325240-9325259 Msa1176970:CDS 60.0%
CTAGCAATTCGGGGTTGGGG+GGG + chr8_1:9327274-9327293 Msa1176970:intron 60.0%
TAGCAATTCGGGGTTGGGGG+GGG + chr8_1:9327275-9327294 Msa1176970:intron 60.0%
TCCACATCGCCAACGGTCAC+TGG + chr8_1:9327908-9327927 Msa1176970:CDS 60.0%
CTTCAGCTGCCAGTGACCGT+TGG - chr8_1:9327920-9327939 None:intergenic 60.0%
AAACGACGGCTCGAGCAAGC+AGG - chr8_1:9327945-9327964 None:intergenic 60.0%
CGAGCCGTCGTTTCTTGGAG+AGG + chr8_1:9327952-9327971 Msa1176970:CDS 60.0%
CCGGCCAGACGGGAACAAAT+TGG - chr8_1:9328069-9328088 None:intergenic 60.0%
! TGATGGTGAGCTCGGCCCTT+AGG - chr8_1:9328400-9328419 None:intergenic 60.0%
AGCAATTCGGGGTTGGGGGG+GGG + chr8_1:9327276-9327295 Msa1176970:intron 65.0%
CTTGCCCCTAGCCGGAGTAG+AGG + chr8_1:9327635-9327654 Msa1176970:CDS 65.0%
GGCGAGAAGTCCTAGGCTCG+CGG + chr8_1:9327757-9327776 Msa1176970:CDS 65.0%
ATCGTGCAAGCCGCGAGCCT+AGG - chr8_1:9327770-9327789 None:intergenic 65.0%
GCCAGTGACCGTTGGCGATG+TGG - chr8_1:9327912-9327931 None:intergenic 65.0%
!! GGGCGAGGCATCGGAAGAGG+AGG + chr8_1:9325243-9325262 Msa1176970:CDS 70.0%
GCAATTCGGGGTTGGGGGGG+GGG + chr8_1:9327277-9327296 Msa1176970:intron 70.0%
CAATTCGGGGTTGGGGGGGG+GGG + chr8_1:9327278-9327297 Msa1176970:intron 70.0%
AATTCGGGGTTGGGGGGGGG+GGG + chr8_1:9327279-9327298 Msa1176970:intron 70.0%
ATTCGGGGTTGGGGGGGGGG+GGG + chr8_1:9327280-9327299 Msa1176970:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 9324849 9328866 9324849 ID=Msa1176970;Name=Msa1176970
chr8_1 mRNA 9324849 9328866 9324849 ID=Msa1176970-mRNA-1;Parent=Msa1176970;Name=Msa1176970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=192|0.6|0.66|1|1|1|6|439|593
chr8_1 exon 9324849 9325290 9324849 ID=Msa1176970-mRNA-1:exon:3119;Parent=Msa1176970-mRNA-1
chr8_1 exon 9325916 9326032 9325916 ID=Msa1176970-mRNA-1:exon:3120;Parent=Msa1176970-mRNA-1
chr8_1 exon 9326409 9326659 9326409 ID=Msa1176970-mRNA-1:exon:3121;Parent=Msa1176970-mRNA-1
chr8_1 exon 9326750 9326813 9326750 ID=Msa1176970-mRNA-1:exon:3122;Parent=Msa1176970-mRNA-1
chr8_1 exon 9326914 9327199 9326914 ID=Msa1176970-mRNA-1:exon:3123;Parent=Msa1176970-mRNA-1
chr8_1 exon 9327614 9328866 9327614 ID=Msa1176970-mRNA-1:exon:3124;Parent=Msa1176970-mRNA-1
chr8_1 five_prime_UTR 9324849 9325040 9324849 ID=Msa1176970-mRNA-1:five_prime_utr;Parent=Msa1176970-mRNA-1
chr8_1 CDS 9325041 9325290 9325041 ID=Msa1176970-mRNA-1:cds;Parent=Msa1176970-mRNA-1
chr8_1 CDS 9325916 9326032 9325916 ID=Msa1176970-mRNA-1:cds;Parent=Msa1176970-mRNA-1
chr8_1 CDS 9326409 9326659 9326409 ID=Msa1176970-mRNA-1:cds;Parent=Msa1176970-mRNA-1
chr8_1 CDS 9326750 9326813 9326750 ID=Msa1176970-mRNA-1:cds;Parent=Msa1176970-mRNA-1
chr8_1 CDS 9326914 9327199 9326914 ID=Msa1176970-mRNA-1:cds;Parent=Msa1176970-mRNA-1
chr8_1 CDS 9327614 9328427 9327614 ID=Msa1176970-mRNA-1:cds;Parent=Msa1176970-mRNA-1
chr8_1 three_prime_UTR 9328428 9328866 9328428 ID=Msa1176970-mRNA-1:three_prime_utr;Parent=Msa1176970-mRNA-1
Gene Sequence

>Msa1176970

ATGAAGGATTTGAATTCCGATCTGTTTGATCCGGTTACGGTGATGGAATCTGAATGGGCTCACGGTGGTTCTAGCTCCGACGCCGATTTCGGATTTGCTTTCAATGATAGTAATTTCTCTGATAGGGTTTTGAGGATTGAAATCATGGCCGATCCAGTTGATCCTCAACCTGATTCTGAAAATTGTACCTCTATTGCTGATTGGGCGAGGCATCGGAAGAGGAGGCGTGAAGATATCAAGAAAGAAAACGTTGGGGATCTGCCAGATGAGCAGATTTTGAATGGGAACCAACCTGACATGGATGATTGTGTGGCTTCTGAAAATCAGGAGGAAGAAGTTGTTGCAATGGTTGAAGAATCCCCTTCTGGTGATGAGGCTGTAAATGACTTAGGTGATGAGGCTGTAAATGACTTAGGTGATGAGGCTGTTCATGACATGTCTGATTTTGAAAATGTGAACACGTCTGATTTTGAAAATGTTAACATAGGTGATGAGGCTGTAAATGACAATGATGAACCCAACCTGGGCATGGATTACTCTGAACCTGCAGTTGTTAGAGTTAAAACCTTACATATCAGTTCTCCGATCTTGGCTGCTAAAAGCCCGTTCTTCTATAAGCTTTTTTCGAATGGGATGAGGGAATCGGAACTGAGACATGTCACCCTCAGAATTAATGCTTCTGAAGAAGCTGCTCTCATGGAGCTACTAAACTTTATGTACAGTAACACATTGAGCATTAAGACAGCACCTGGTTTGCTGGATGTTTTGATGGCTGCCGATAAATTTGAAGTTGCTTCATGCATGAGATATTGTAGTCGGTTGTTGCGAAATATGCAAATGACACCTGAATCTGCATTGCTTTACCTGGAGCTGCCATCTAGTGTCTTAATGGCTGATGCAGTTCAACCACTAACTGATGCGGCAAAGCAGTATCTTGCTAGCCGATACAAGGATATAACCAAGCAAGTGTTCCAGGATGAGGTTATGAACTTGCCCCTAGCCGGAGTAGAGGCAATATTATCTAGTGATGATCTCCAGGTTGCATCAGAAGATGCTGTTTATGACTTTGTGCTGAAGTGGGCTAGACACCAGTACGGCAATCTGGAAGATAGGCGAGAAGTCCTAGGCTCGCGGCTTGCACGATTTATCCGCTTCCCTCATATGACCTGCCGAAAGCTTAAGAAGGTCTTAACCTGTAGTGACTTTGAACATGATGTTTCATCCAAGCTTGTCCTTGAGGCTCTATTTTTCAAGGCAGAGGTTCCACATCGCCAACGGTCACTGGCAGCTGAAGAGCCTGCTTGCTCGAGCCGTCGTTTCTTGGAGAGGGCATACAAATATCGTCCTGTCAAGGTGGTTGAATTTGAACTTCCACGCCAGCAGTGTGTAGTATATTTGGATCTAAAGCGGGAGGAGTGTTCCAATTTGTTCCCGTCTGGCCGGGTTTATTCTCAGGCATTTCACTTGGGTGGACAAGGGTTTTTTCTGTCAGCACATTGTAACATGGATCAACAAAGTTCTTTCCATTGCTTTGGGCTGTTTTTGGGAATGCAGGAAAAGGGATCAGTGAGCTTCACTGTGGACTATGAATTTGCGGCAAGGTCAAGACCAACAGAGGAGTTTGTTAGCAAATACAAAGGCAATTACACATTCACAGGTGGCAAGGCTGTTGGCTACAGAAACTTGTTTGCGATTCCATGGACTTCGTTCATGGCTGAGGATTGTCTTTACTTCATTAATGGCGTTCTACACCTAAGGGCCGAGCTCACCATCAGACAGTGA
Protein sequence

>Msa1176970

MKDLNSDLFDPVTVMESEWAHGGSSSDADFGFAFNDSNFSDRVLRIEIMADPVDPQPDSENCTSIADWARHRKRRREDIKKENVGDLPDEQILNGNQPDMDDCVASENQEEEVVAMVEESPSGDEAVNDLGDEAVNDLGDEAVHDMSDFENVNTSDFENVNIGDEAVNDNDEPNLGMDYSEPAVVRVKTLHISSPILAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNMQMTPESALLYLELPSSVLMADAVQPLTDAAKQYLASRYKDITKQVFQDEVMNLPLAGVEAILSSDDLQVASEDAVYDFVLKWARHQYGNLEDRREVLGSRLARFIRFPHMTCRKLKKVLTCSDFEHDVSSKLVLEALFFKAEVPHRQRSLAAEEPACSSRRFLERAYKYRPVKVVEFELPRQQCVVYLDLKREECSNLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFTVDYEFAARSRPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMAEDCLYFINGVLHLRAELTIRQ*