AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097470 MtrunA17_Chr1g0212481 96.506 601 20 1 1 601 1 600 0.0 1212
Msa0097470 MtrunA17_Chr1g0152521 76.471 357 27 3 1 349 1 308 0.0 539
Msa0097470 MtrunA17_Chr1g0152511 78.800 250 5 2 352 601 1 202 1.84e-130 380
Msa0097470 MtrunA17_Chr4g0039621 27.022 581 341 22 59 574 19 581 1.09e-46 176
Msa0097470 MtrunA17_Chr4g0068571 24.719 445 271 15 177 581 37 457 3.95e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097470 AT3G55400.1 73.147 607 145 4 1 591 1 605 0.0 920
Msa0097470 AT3G55400.2 74.081 517 117 3 1 502 1 515 0.0 801
Msa0097470 AT4G13780.1 26.049 572 344 19 59 569 20 573 2.04e-46 175

Find 226 sgRNAs with CRISPR-Local

Find 564 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACGGAAACTTAAGATTT+TGG 0.138002 1_3:-3291869 Msa0097460:intron
TTTCAGATGGAGAAACTTTA+TGG 0.156284 1_3:-3291962 Msa0097460:intron
TCCATGGCCATATACCATTT+TGG 0.158244 1_3:-3297091 None:intergenic
AAAGATGGCTGCACAAAATT+TGG 0.164014 1_3:-3294793 None:intergenic
TTATTGCTTGCTGTGGTTAC+TGG 0.193853 1_3:-3292710 Msa0097460:intron
AACGATTTGGTTAGTAAGTT+TGG 0.200559 1_3:+3298843 Msa0097470:CDS
TTCCTCAGAGAGGTGGAATT+TGG 0.232008 1_3:+3298888 Msa0097470:CDS
CTTGCTGTGGTTACTGGTTT+TGG 0.234081 1_3:-3292704 Msa0097460:intron
CGACGCCATTGCTCGATTTC+AGG 0.234183 1_3:+3293426 Msa0097470:CDS
TGGCAGGAAATCTTCTTAAT+AGG 0.253659 1_3:+3299084 Msa0097470:intron
TGTAATTTGACAGCGGCTTT+TGG 0.258469 1_3:+3293682 Msa0097470:intron
TACGTTTCCATGCTGTTTAT+TGG 0.262142 1_3:+3297034 Msa0097470:CDS
TTGACACACTATTTATATAC+TGG 0.281972 1_3:+3300743 Msa0097470:three_prime_UTR
AGAAGAAGGGAAATGGAAAT+AGG 0.298158 1_3:-3293275 None:intergenic
TGCAGAAGGAAATGCATTTA+AGG 0.298760 1_3:+3299166 Msa0097470:CDS
TTCCCGAGCATCGGTTGATT+GGG 0.300431 1_3:+3295763 Msa0097470:CDS
GCTACCGTATGATGCATCTA+AGG 0.301843 1_3:+3293091 Msa0097470:five_prime_UTR
GTATGGTTTGATGCTTTACT+AGG 0.314469 1_3:+3295824 Msa0097470:CDS
GAAACAGTGTTTAGTAAATC+AGG 0.320253 1_3:-3296427 None:intergenic
CCATCTCCTCGCCATGATAT+AGG 0.322337 1_3:+3291931 Msa0097470:five_prime_UTR
TACGCTTGAACCAAACGATT+TGG 0.323345 1_3:+3298830 Msa0097470:CDS
ATCAGCTTGTGAGGCTGTTC+TGG 0.327249 1_3:+3299759 Msa0097470:CDS
CAACTCAAGCTCGGAGTAAC+AGG 0.327281 1_3:-3300317 None:intergenic
TTTCCCGAGCATCGGTTGAT+TGG 0.328655 1_3:+3295762 Msa0097470:CDS
TACCAAGTGGGGTGGACTTA+AGG 0.328656 1_3:+3300478 Msa0097470:CDS
TGCAACTGCTGCCACTTCTC+AGG 0.342700 1_3:+3293754 Msa0097470:CDS
AACAAAATTAATTCAGAATA+GGG 0.347104 1_3:-3300658 None:intergenic
ATGCTCAACTTGGCTATTCC+AGG 0.350933 1_3:+3300348 Msa0097470:CDS
ATCAACCGATGCTCGGGAAA+TGG 0.352674 1_3:-3295759 None:intergenic
CGTCAACGCCCCTCCCCATA+TGG 0.359349 1_3:+3293378 Msa0097470:CDS
ACGATTTGGTTAGTAAGTTT+GGG 0.362204 1_3:+3298844 Msa0097470:CDS
TAATGCTGGTAATTCCTATA+TGG 0.374295 1_3:+3299789 Msa0097470:CDS
CCAGCTATGCTAATGTCTGC+TGG 0.374936 1_3:+3297057 Msa0097470:CDS
TTCTTGAAACACAAGGCTTA+AGG 0.378492 1_3:-3294702 None:intergenic
CCCAGGTTGCTGCATCAAAT+TGG 0.382507 1_3:-3300373 None:intergenic
CCAGCTACACTGCACTTGAT+TGG 0.385424 1_3:+3296460 Msa0097470:CDS
GCCTTGTGTTTCAAGAAAAG+AGG 0.387769 1_3:+3294708 Msa0097470:CDS
GAGGTGTGAAACATTGGAAT+TGG 0.388355 1_3:-3293239 None:intergenic
GAAATGGAAATAGGGTTTGT+TGG 0.388728 1_3:-3293266 None:intergenic
ACCAAGTGGGGTGGACTTAA+GGG 0.391465 1_3:+3300479 Msa0097470:CDS
TGGAATAAGCGCTACCCATA+TGG 0.393918 1_3:-3293393 None:intergenic
AAACAAAATTAATTCAGAAT+AGG 0.397376 1_3:-3300659 None:intergenic
CACAAGCTTACAAGACGCTT+TGG 0.398442 1_3:+3293810 Msa0097470:CDS
ACTCATGATTGGGATTTGTT+AGG 0.399311 1_3:-3292670 Msa0097460:intron
GAGGTGGAATTTGGCAATGA+TGG 0.400433 1_3:+3298897 Msa0097470:CDS
AACTTACTAACCAAATCGTT+TGG 0.404070 1_3:-3298840 None:intergenic
AGGGGCATTACTTGCTTCTT+CGG 0.405478 1_3:-3291836 Msa0097460:CDS
TGGGTTAAGCCTTCCCAAAA+TGG 0.406352 1_3:+3297077 Msa0097470:CDS
AAGAAAGTTATATTCATTAC+CGG 0.407015 1_3:+3293707 Msa0097470:CDS
TGTGAGGCTGTTCTGGAGAT+TGG 0.410328 1_3:+3299766 Msa0097470:CDS
AGCCTTCCCAAAATGGTATA+TGG 0.410553 1_3:+3297084 Msa0097470:CDS
CAGCCTCACAAGCTGATGTC+AGG 0.412097 1_3:-3299753 None:intergenic
CAAGTTGTTGGGAATGTTGA+TGG 0.417350 1_3:-3292771 Msa0097460:CDS
TTGCAGAAGAAAGCTGCTCT+TGG 0.421073 1_3:-3293298 None:intergenic
TTCGTCGTAAAGGAACTTCA+TGG 0.424544 1_3:+3293042 Msa0097470:five_prime_UTR
CCAATCAAGTGCAGTGTAGC+TGG 0.425417 1_3:-3296460 None:intergenic
TTTGGTTATGACTCATGATT+GGG 0.425701 1_3:-3292680 Msa0097460:intron
TGTCAGCTGTGAAGAATATA+AGG 0.426210 1_3:+3294390 Msa0097470:CDS
CATTTACCGAGCTGATTATG+AGG 0.426407 1_3:+3294357 Msa0097470:CDS
ATTCCTTTACCTCGTGTAAA+CGG 0.431671 1_3:-3294816 None:intergenic
CTCTTGGAGAAGAAGGGAAA+TGG 0.439070 1_3:-3293282 None:intergenic
GAAGAAGGGAAATGGAAATA+GGG 0.439147 1_3:-3293274 None:intergenic
ATCGGAAAGTTTCGTCGTAA+AGG 0.439668 1_3:+3293032 Msa0097470:five_prime_UTR
TACTTCCTTTGATTATCTCA+TGG 0.440819 1_3:-3292865 Msa0097460:CDS
ACCAATTTGATGCAGCAACC+TGG 0.442225 1_3:+3300372 Msa0097470:CDS
AGCAATGGCGTCGGCGGCGA+TGG 0.443811 1_3:-3293416 None:intergenic
GCTCAAAGTACCAATTGTAT+TGG 0.446015 1_3:-3298967 None:intergenic
AAAGCTGCTCTTGGAGAAGA+AGG 0.453613 1_3:-3293289 None:intergenic
TGAGTCTTGTCACTCGGAAC+AGG 0.454916 1_3:-3295791 None:intergenic
GAGAAAGAAGCGCTTCTACT+TGG 0.455519 1_3:-3292843 Msa0097460:CDS
AATTCACTGCCAGTGTTGAT+TGG 0.457459 1_3:-3299133 None:intergenic
AGATATCTAAGGCGGAGAAT+CGG 0.457818 1_3:+3293014 Msa0097470:five_prime_UTR
AATAGGGTTTGTTGGATTTG+AGG 0.459704 1_3:-3293258 None:intergenic
AAACAAGCTCAAGAAGTTGT+TGG 0.459841 1_3:+3300620 Msa0097470:CDS
TTTGTCATCATTTGAGGAAG+TGG 0.461007 1_3:-3293326 None:intergenic
GCCCCAATCAACCGATGCTC+GGG 0.461201 1_3:-3295765 None:intergenic
TAAACACTGTTTCTTCAAGT+TGG 0.465611 1_3:+3296437 Msa0097470:CDS
GCACATCTTGCCAATACAAT+TGG 0.466543 1_3:+3298957 Msa0097470:CDS
CCAGCAGACATTAGCATAGC+TGG 0.469425 1_3:-3297057 None:intergenic
GGAATAAGCGCTACCCATAT+GGG 0.471131 1_3:-3293392 None:intergenic
AAGAAGACTCTGAAAAGTAA+AGG 0.472328 1_3:+3300590 Msa0097470:CDS
AGGGGCACGCTCGTCCATAT+AGG 0.472951 1_3:-3299803 None:intergenic
AGAGGGGTTGTGATGACATA+GGG 0.474816 1_3:-3293349 None:intergenic
GCATTATGCATGTGTATGTA+TGG 0.476717 1_3:+3300796 Msa0097470:intron
CCTATATCATGGCGAGGAGA+TGG 0.478918 1_3:-3291931 Msa0097460:intron
ATCAACGATGGCATGGGTAG+TGG 0.480976 1_3:+3292908 Msa0097470:five_prime_UTR
AGAAGACTCTGAAAAGTAAA+GGG 0.482397 1_3:+3300591 Msa0097470:CDS
ATAGGGTTTGTCATCATTTG+AGG 0.484471 1_3:-3293332 None:intergenic
CTGAAGTGGAAGAAGACAAA+GGG 0.484766 1_3:+3300555 Msa0097470:CDS
ATGTTAGGATGGTATGAAGA+TGG 0.485616 1_3:+3298791 Msa0097470:intron
AGGTGGAATTTGGCAATGAT+GGG 0.485834 1_3:+3298898 Msa0097470:CDS
CTCCCTGACATCAGCTTGTG+AGG 0.486304 1_3:+3299750 Msa0097470:CDS
TTAGTAAATCAGGTTGCTCC+TGG 0.489812 1_3:-3296417 None:intergenic
GGGTGGACTTAAGGGTGGTC+AGG 0.492564 1_3:+3300487 Msa0097470:CDS
GAGAAGTGTGGATGAAATTG+TGG 0.493466 1_3:+3292963 Msa0097470:five_prime_UTR
CGAACGTGACTCAAGTTGTT+GGG 0.494888 1_3:-3292782 Msa0097460:CDS
TGCCCCAATCAACCGATGCT+CGG 0.495001 1_3:-3295766 None:intergenic
ATAACATTAGTAAGCACTCT+GGG 0.496034 1_3:-3293124 None:intergenic
CTGTTACTCCGAGCTTGAGT+TGG 0.496703 1_3:+3300318 Msa0097470:CDS
TGTTAGGATGGTATGAAGAT+GGG 0.497162 1_3:+3298792 Msa0097470:intron
CTGGATCAAAAGTGGCCTGC+GGG 0.499199 1_3:+3295730 Msa0097470:CDS
ACGGTTGCGTTAGATATCTA+AGG 0.499453 1_3:+3293003 Msa0097470:five_prime_UTR
CTCACCGTGTTCATCGGTGC+CGG 0.502444 1_3:-3293726 None:intergenic
GCAACTGCTGCCACTTCTCA+GGG 0.504359 1_3:+3293755 Msa0097470:CDS
TGTATTTCGCTTAGTCCTGA+TGG 0.508888 1_3:-3292738 Msa0097460:CDS
ACCCTTAAGTCCACCCCACT+TGG 0.509023 1_3:-3300480 None:intergenic
ATGAGATTGCAGTGGTCAGT+AGG 0.514173 1_3:-3293785 None:intergenic
TAAGGACAATGTAGCGAGGC+TGG 0.515013 1_3:+3299184 Msa0097470:CDS
AAGGAAGTAACGGTATCATC+AGG 0.515618 1_3:+3292879 Msa0097470:five_prime_UTR
GGGAAGAGAGGAAGAAGAAA+CGG 0.517435 1_3:+3292984 Msa0097470:five_prime_UTR
AGACTCAGACTATATATGTA+TGG 0.517740 1_3:+3295807 Msa0097470:CDS
ACTTAAGGGTGGTCAGGTCA+TGG 0.517933 1_3:+3300493 Msa0097470:CDS
GGATTTGAGGTGTGAAACAT+TGG 0.518965 1_3:-3293245 None:intergenic
ATTGGAACGGAGTGAAAGAA+TGG 0.519846 1_3:-3293221 None:intergenic
CTATTTGGTGCAGGATGAGA+AGG 0.519918 1_3:+3294648 Msa0097470:intron
AAGAGGGGTTGTGATGACAT+AGG 0.521343 1_3:-3293350 None:intergenic
TATGGTTTGATGCTTTACTA+GGG 0.525816 1_3:+3295825 Msa0097470:CDS
TGAGATTGCAGTGGTCAGTA+GGG 0.526148 1_3:-3293784 None:intergenic
AATCTTCTTAATAGGACTCT+AGG 0.528211 1_3:+3299092 Msa0097470:CDS
ATCCTAGCAAAGACTGGTTG+AGG 0.529078 1_3:-3300521 None:intergenic
CCTTGGTCTCTCTTTAAGCA+AGG 0.530338 1_3:+3299823 Msa0097470:CDS
TGCTGCATCAAATTGGTCCC+TGG 0.531484 1_3:-3300366 None:intergenic
CAGCTATGCTAATGTCTGCT+GGG 0.531516 1_3:+3297058 Msa0097470:CDS
TGGAACAACATCCTATATCA+TGG 0.532042 1_3:-3291942 Msa0097460:intron
CAAGCAATAACTTCACCATC+AGG 0.536126 1_3:+3292723 Msa0097470:five_prime_UTR
TTTCTCCATGAGATAATCAA+AGG 0.537338 1_3:+3292860 Msa0097470:five_prime_UTR
GTTCTGGAGATTGGTAATGC+TGG 0.538081 1_3:+3299775 Msa0097470:CDS
CCCAAAATGGTATATGGCCA+TGG 0.540455 1_3:+3297090 Msa0097470:CDS
TGCTTACTAATGTTATCTGC+GGG 0.540699 1_3:+3293131 Msa0097470:five_prime_UTR
TGCGTTGTTCTAATTTATCA+CGG 0.542909 1_3:-3291885 Msa0097460:intron
TGCTTCTGAAGCAGCTGCCA+AGG 0.545752 1_3:+3299852 Msa0097470:CDS
TCCCGAGCATCGGTTGATTG+GGG 0.545821 1_3:+3295764 Msa0097470:CDS
GATAACATTAGTAAGCACTC+TGG 0.548751 1_3:-3293125 None:intergenic
CCAATTTGATGCAGCAACCT+GGG 0.549013 1_3:+3300373 Msa0097470:CDS
ATGAAGATGGGCAAGTCACT+AGG 0.550900 1_3:+3298804 Msa0097470:CDS
ATATGGACGAGCGTGCCCCT+TGG 0.551543 1_3:+3299806 Msa0097470:CDS
GTTCAAGATCAACGATGGCA+TGG 0.554226 1_3:+3292901 Msa0097470:five_prime_UTR
AGCTCGGTAAATGTCACCAT+TGG 0.558279 1_3:-3294347 None:intergenic
GTCAACGCCCCTCCCCATAT+GGG 0.558701 1_3:+3293379 Msa0097470:CDS
TTGAAACACAAGGCTTAAGG+TGG 0.560531 1_3:-3294699 None:intergenic
CTGTCTCTAATATAATTACA+AGG 0.560785 1_3:-3300268 None:intergenic
TATTCGAGAGTGCTTGCCAA+TGG 0.562606 1_3:+3294331 Msa0097470:CDS
GAGATAATCAAAGGAAGTAA+CGG 0.564698 1_3:+3292869 Msa0097470:five_prime_UTR
ACCTCGTGTAAACGGAAAGA+TGG 0.565307 1_3:-3294808 None:intergenic
GCGAACGTGACTCAAGTTGT+TGG 0.566221 1_3:-3292783 Msa0097460:CDS
AACCTCAACCAGTCTTTGCT+AGG 0.566335 1_3:+3300519 Msa0097470:CDS
TATATTCTCCAACTCAAGCT+CGG 0.567513 1_3:-3300326 None:intergenic
GTCAAAATATCAGAAGTCAC+TGG 0.568046 1_3:+3294750 Msa0097470:CDS
ATCAGCACTAGCTGATGACC+AGG 0.568431 1_3:+3296399 Msa0097470:CDS
CTGCCCTTAGATGCATCATA+CGG 0.568823 1_3:-3293095 None:intergenic
ATACTTCTTCCTCAGAGAGG+TGG 0.569549 1_3:+3298881 Msa0097470:CDS
GGTGAAGTTATTGCTTGCTG+TGG 0.571063 1_3:-3292717 Msa0097460:intron
TTCAAGATCAACGATGGCAT+GGG 0.572468 1_3:+3292902 Msa0097470:five_prime_UTR
CTTCTACTTGGAACTTCGAA+CGG 0.572835 1_3:-3292831 Msa0097460:CDS
ATACCTTTGTCAAGAATCCA+TGG 0.573946 1_3:-3297107 None:intergenic
GATTGAAAATCAAACTGAAG+TGG 0.574353 1_3:+3300541 Msa0097470:CDS
GGGGCGTTGACGTAGTAAAG+AGG 0.574782 1_3:-3293367 None:intergenic
GGCATTACTTGCTTCTTCGG+AGG 0.575796 1_3:-3291833 Msa0097460:CDS
TAAATTTCTAGGTTCAAACC+TGG 0.577775 1_3:+3295711 Msa0097470:intron
GTTCAAACCTGGATCAAAAG+TGG 0.577799 1_3:+3295722 Msa0097470:CDS
AATGGCGTCGGCGGCGATGG+TGG 0.578592 1_3:-3293413 None:intergenic
TACACTGCACTTGATTGGTA+AGG 0.579282 1_3:+3296465 Msa0097470:CDS
TGCTCAACTTGGCTATTCCA+GGG 0.580797 1_3:+3300349 Msa0097470:CDS
AGAAGTGTGGATGAAATTGT+GGG 0.582290 1_3:+3292964 Msa0097470:five_prime_UTR
AGCGCTACCCATATGGGGAG+GGG 0.586669 1_3:-3293386 None:intergenic
ATTGCAGTGGTCAGTAGGGG+TGG 0.588624 1_3:-3293780 None:intergenic
GGGCGTTGACGTAGTAAAGA+GGG 0.589011 1_3:-3293366 None:intergenic
AAATCGAGCAATGGCGTCGG+CGG 0.591504 1_3:-3293422 None:intergenic
AATTCCACTACGGCTGCAGA+AGG 0.591965 1_3:+3299152 Msa0097470:CDS
AGCCTCACAAGCTGATGTCA+GGG 0.594895 1_3:-3299752 None:intergenic
TGGAGAATATATGCTCAACT+TGG 0.596758 1_3:+3300338 Msa0097470:CDS
ACACAAGGCTTAAGGTGGAT+CGG 0.602973 1_3:-3294694 None:intergenic
ATTTACCGAGCTGATTATGA+GGG 0.603837 1_3:+3294358 Msa0097470:CDS
CCTTGCTTAAAGAGAGACCA+AGG 0.604022 1_3:-3299823 None:intergenic
AAAGAACTGCCAATCAACAC+TGG 0.604833 1_3:+3299124 Msa0097470:CDS
GTTAAGAGAGATGAGAAGTG+TGG 0.606086 1_3:+3292951 Msa0097470:five_prime_UTR
CAAGCATGAAGCAGTTGTGA+AGG 0.607264 1_3:+3294303 Msa0097470:CDS
AGGGGTGGAACCCTGAGAAG+TGG 0.613335 1_3:-3293765 None:intergenic
TAGCTGGCCAATAAACAGCA+TGG 0.614722 1_3:-3297041 None:intergenic
AAATTCCCTCATAATCAGCT+CGG 0.616005 1_3:-3294363 None:intergenic
GGATGAAATTGTGGGAAGAG+AGG 0.616429 1_3:+3292972 Msa0097470:five_prime_UTR
GTGCTTACTAATGTTATCTG+CGG 0.616758 1_3:+3293130 Msa0097470:five_prime_UTR
CTACCGTATGATGCATCTAA+GGG 0.617958 1_3:+3293092 Msa0097470:five_prime_UTR
GGGAAATGGAAAAGTCCCGC+AGG 0.620262 1_3:-3295745 None:intergenic
ATTACCGGCACCGATGAACA+CGG 0.621414 1_3:+3293722 Msa0097470:CDS
AAGCGCTACCCATATGGGGA+GGG 0.629346 1_3:-3293387 None:intergenic
GTGAAACATTGGAATTGGAA+CGG 0.630511 1_3:-3293234 None:intergenic
ATTTCCTTCTGCAGCCGTAG+TGG 0.632038 1_3:-3299156 None:intergenic
AAGCTGCTCTTGGAGAAGAA+GGG 0.636630 1_3:-3293288 None:intergenic
GCCATCTTTCCGTTTACACG+AGG 0.638336 1_3:+3294807 Msa0097470:CDS
GAAGACAAAGGGGTTGCAGT+CGG 0.640051 1_3:+3300566 Msa0097470:CDS
TAGAGAGATACCAAGTGGGG+TGG 0.641306 1_3:+3300470 Msa0097470:intron
ATAGTCTGAGTCTTGTCACT+CGG 0.651357 1_3:-3295797 None:intergenic
CAATGATGGGGACTATTCAG+AGG 0.651752 1_3:+3298911 Msa0097470:CDS
CTGAAATCGAGCAATGGCGT+CGG 0.652722 1_3:-3293425 None:intergenic
ATCAGGTTCAAGATCAACGA+TGG 0.652862 1_3:+3292896 Msa0097470:five_prime_UTR
ACTGGCAGTGAATTCCACTA+CGG 0.653538 1_3:+3299142 Msa0097470:CDS
ACTGAAGTGGAAGAAGACAA+AGG 0.655968 1_3:+3300554 Msa0097470:CDS
GAGATTGCAGTGGTCAGTAG+GGG 0.659757 1_3:-3293783 None:intergenic
TGCCAAATTCCACCTCTCTG+AGG 0.662782 1_3:-3298890 None:intergenic
AGGTACCTGAAATCGAGCAA+TGG 0.663948 1_3:-3293431 None:intergenic
ATTGTAGAGAGATACCAAGT+GGG 0.663995 1_3:+3300466 Msa0097470:intron
CCTGGATCAAAAGTGGCCTG+CGG 0.665415 1_3:+3295729 Msa0097470:CDS
TGGTCTCTCTTTAAGCAAGG+AGG 0.665745 1_3:+3299826 Msa0097470:CDS
CATTGTAGAGAGATACCAAG+TGG 0.666340 1_3:+3300465 Msa0097470:intron
CTTGCTTAAAGAGAGACCAA+GGG 0.666502 1_3:-3299822 None:intergenic
CAACATCCTATATCATGGCG+AGG 0.669467 1_3:-3291937 Msa0097460:intron
TAAGCGCTACCCATATGGGG+AGG 0.670114 1_3:-3293388 None:intergenic
TAGATACTTCTTCCTCAGAG+AGG 0.671329 1_3:+3298878 Msa0097470:CDS
GGTGGAATTTGGCAATGATG+GGG 0.671855 1_3:+3298899 Msa0097470:CDS
TGGCCATGGATTCTTGACAA+AGG 0.674126 1_3:+3297104 Msa0097470:CDS
TGATAAGTTCATTAGAACAA+CGG 0.677637 1_3:+3294276 Msa0097470:CDS
AAAATATCAGAAGTCACTGG+AGG 0.677971 1_3:+3294753 Msa0097470:CDS
GAATAAGCGCTACCCATATG+GGG 0.679075 1_3:-3293391 None:intergenic
GGCGTTGACGTAGTAAAGAG+GGG 0.679296 1_3:-3293365 None:intergenic
AGTAACAGGAGATAGTGCAA+TGG 0.702926 1_3:-3300303 None:intergenic
TTGTAGAGAGATACCAAGTG+GGG 0.703831 1_3:+3300467 Msa0097470:intron
TAACATTAGTAAGCACTCTG+GGG 0.705017 1_3:-3293123 None:intergenic
CATTTAAGGACAATGTAGCG+AGG 0.708225 1_3:+3299180 Msa0097470:CDS
GTTGTTGGGAATGTTGATGG+CGG 0.710256 1_3:-3292768 Msa0097460:CDS
TTGCTTAAAGAGAGACCAAG+GGG 0.714060 1_3:-3299821 None:intergenic
AAGTGGGGTGGACTTAAGGG+TGG 0.722735 1_3:+3300482 Msa0097470:CDS
TGAAGTGGAAGAAGACAAAG+GGG 0.736463 1_3:+3300556 Msa0097470:CDS
GTTGCGTTAGATATCTAAGG+CGG 0.740414 1_3:+3293006 Msa0097470:five_prime_UTR
TATCTGCGGGAAAAGAAACG+AGG 0.741232 1_3:+3293144 Msa0097470:five_prime_UTR
CTTGTGAAATGAGATTGCAG+TGG 0.809288 1_3:-3293793 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATTATTTGCAAATT+TGG - chr1_3:3292036-3292055 Msa0097460:intron 10.0%
!! AACTTGAATAATTAAAATTT+CGG - chr1_3:3294194-3294213 None:intergenic 10.0%
!! TAATTTCTATATAAATTTCT+AGG + chr1_3:3295700-3295719 Msa0097470:intron 10.0%
!! TATAATAATAGTACTTATAT+TGG + chr1_3:3298351-3298370 Msa0097470:intron 10.0%
!!! TTTTTTATTTTGAAAATGTT+AGG + chr1_3:3298776-3298795 Msa0097470:intron 10.0%
!!! ATAACTATTTCATTTTTATT+AGG - chr1_3:3299481-3299500 None:intergenic 10.0%
!! AATAATGTTACAAATATTAT+TGG - chr1_3:3299991-3300010 None:intergenic 10.0%
!!! GATCTATATATTTTTCTATT+AGG - chr1_3:3292111-3292130 Msa0097460:intron 15.0%
!! AAAAATATATAGATCCAATT+TGG + chr1_3:3292116-3292135 Msa0097470:intron 15.0%
!!! TTTTTTTCATTAACTTCTAT+CGG + chr1_3:3292253-3292272 Msa0097470:intron 15.0%
!! AATAAGTTAAAAACAACTTA+TGG - chr1_3:3292417-3292436 Msa0097460:intron 15.0%
!!! TAAAAACAATTATTCTAAGA+AGG - chr1_3:3293483-3293502 None:intergenic 15.0%
!! AAAAAGTTATTATCTAACTT+TGG + chr1_3:3293641-3293660 Msa0097470:intron 15.0%
!! AAAAGTTAGTTAATCAATTT+GGG - chr1_3:3295308-3295327 None:intergenic 15.0%
!! AAAAAGTTAGTTAATCAATT+TGG - chr1_3:3295309-3295328 None:intergenic 15.0%
!! AAAAAGAAATACAAATACAA+AGG + chr1_3:3295437-3295456 Msa0097470:intron 15.0%
!!! TTTATTTTGCTTTAACATTA+TGG + chr1_3:3295603-3295622 Msa0097470:intron 15.0%
!!! AATAAATAAAGGTATAATAG+TGG + chr1_3:3296197-3296216 Msa0097470:intron 15.0%
!! AGAAACATAAGATAATAAAT+AGG - chr1_3:3297144-3297163 None:intergenic 15.0%
!! ATAAATCCAAATTCAATAAA+TGG - chr1_3:3297558-3297577 None:intergenic 15.0%
!!! ATTTTTACGATACTATAATT+AGG - chr1_3:3297627-3297646 None:intergenic 15.0%
!! ATTTAAGTAATGATATGATT+TGG - chr1_3:3298524-3298543 None:intergenic 15.0%
!! ATTATAAAAGATAGATTCAA+TGG + chr1_3:3300008-3300027 Msa0097470:intron 15.0%
!!! ATTTAATTTGATCAAATATC+AGG - chr1_3:3300055-3300074 None:intergenic 15.0%
!! ATAAGTGAAAATTCTTTATT+AGG - chr1_3:3300233-3300252 None:intergenic 15.0%
!! AACAAAATTAATTCAGAATA+GGG - chr1_3:3300661-3300680 None:intergenic 15.0%
!! AAACAAAATTAATTCAGAAT+AGG - chr1_3:3300662-3300681 None:intergenic 15.0%
!!! AATTTCGATATTTTTCTTTT+TGG + chr1_3:3300833-3300852 Msa0097470:three_prime_UTR 15.0%
!!! ATTTCGATATTTTTCTTTTT+GGG + chr1_3:3300834-3300853 Msa0097470:three_prime_UTR 15.0%
!! AATAATAATATACAGCTACA+AGG + chr1_3:3292044-3292063 Msa0097470:intron 20.0%
!! AACAATCTTACAATTACTAT+AGG + chr1_3:3292178-3292197 Msa0097470:intron 20.0%
!!! AGTTTTTATAAGCTTATATG+TGG - chr1_3:3292279-3292298 Msa0097460:intron 20.0%
!! ATTTGAGCTTATCTATTTAT+TGG + chr1_3:3292347-3292366 Msa0097470:intron 20.0%
!! CATTATTATCTAACTTTAGT+GGG + chr1_3:3293591-3293610 Msa0097470:intron 20.0%
!! AAGAAAGTTATATTCATTAC+CGG + chr1_3:3293707-3293726 Msa0097470:CDS 20.0%
!! CTACTTGAAAAAAAAAGTAA+GGG - chr1_3:3293857-3293876 None:intergenic 20.0%
!! ACTACTTGAAAAAAAAAGTA+AGG - chr1_3:3293858-3293877 None:intergenic 20.0%
!!! ATAGCAATTTTGTAAATTTG+AGG - chr1_3:3293924-3293943 None:intergenic 20.0%
!! TTGAAAAATGACTAAATTGA+CGG - chr1_3:3293971-3293990 None:intergenic 20.0%
!!! TGATGCATTTTTAGTAAATA+TGG + chr1_3:3294089-3294108 Msa0097470:intron 20.0%
!!! ATTGACTTTCTTTGATTTAT+AGG + chr1_3:3294122-3294141 Msa0097470:intron 20.0%
!! TCTATTTACAATCCTTTAAT+AGG + chr1_3:3294526-3294545 Msa0097470:intron 20.0%
!!! TTTAGAATTTGTGTAATGTA+AGG - chr1_3:3295103-3295122 None:intergenic 20.0%
!! CTATAAGTTTATATTCTGTA+AGG + chr1_3:3295197-3295216 Msa0097470:intron 20.0%
!! AGATTAATAAAACAAACACA+CGG - chr1_3:3295346-3295365 None:intergenic 20.0%
!! ATTATGCACAATTATTTGTA+TGG + chr1_3:3295976-3295995 Msa0097470:intron 20.0%
!! TCACTAACTACAATTAATAA+GGG - chr1_3:3296154-3296173 None:intergenic 20.0%
!! TTCACTAACTACAATTAATA+AGG - chr1_3:3296155-3296174 None:intergenic 20.0%
!! GGATGAAATTCAATAAATAA+AGG + chr1_3:3296186-3296205 Msa0097470:intron 20.0%
!! ATATTTCTCACTTAAGAAAA+GGG - chr1_3:3296586-3296605 None:intergenic 20.0%
!! TATATTTCTCACTTAAGAAA+AGG - chr1_3:3296587-3296606 None:intergenic 20.0%
!! CAAAACGATAGAAAATAAAA+AGG - chr1_3:3296656-3296675 None:intergenic 20.0%
!!! TTATCTTATGTTTCTTTTTG+AGG + chr1_3:3297149-3297168 Msa0097470:intron 20.0%
!! TTCATTCCATTTATTGAATT+TGG + chr1_3:3297549-3297568 Msa0097470:intron 20.0%
!! ATACTTGTATTATTAACCAT+TGG + chr1_3:3297936-3297955 Msa0097470:intron 20.0%
!! GCATAAGAATGATAAAAAAA+TGG - chr1_3:3298245-3298264 None:intergenic 20.0%
!! TAAATAGTTCAATAACATTG+AGG + chr1_3:3298301-3298320 Msa0097470:intron 20.0%
!!! GAAAACTATATAAAGCATTA+AGG - chr1_3:3298389-3298408 None:intergenic 20.0%
!! ATCATATCATTACTTAAATC+TGG + chr1_3:3298525-3298544 Msa0097470:intron 20.0%
!! ATAATCTTAACAAGTTTACA+AGG - chr1_3:3298589-3298608 None:intergenic 20.0%
!!! TGTAAACTTGTTAAGATTAT+CGG + chr1_3:3298589-3298608 Msa0097470:intron 20.0%
!! AGTAATAGTAATTTGATTGT+TGG + chr1_3:3298662-3298681 Msa0097470:intron 20.0%
!!! TTATTTTGAAAATGTTAGGA+TGG + chr1_3:3298780-3298799 Msa0097470:intron 20.0%
!! AGATGAAAAGAAGAAAAATA+TGG + chr1_3:3299355-3299374 Msa0097470:intron 20.0%
!!! TGATCAATATTTACTTTTGT+AGG + chr1_3:3299696-3299715 Msa0097470:intron 20.0%
!! AACTTCATACAATAAAATGT+TGG + chr1_3:3299901-3299920 Msa0097470:intron 20.0%
!! TTAATGTGAGAAAAGAAAAA+GGG - chr1_3:3300091-3300110 None:intergenic 20.0%
!! ATTAATGTGAGAAAAGAAAA+AGG - chr1_3:3300092-3300111 None:intergenic 20.0%
! TGTAAGAAGTTTATCCAAAT+TGG - chr1_3:3292133-3292152 Msa0097460:intron 25.0%
! AAAAATCAATCATAGAATCC+TGG - chr1_3:3292452-3292471 Msa0097460:intron 25.0%
! CCATAAATTAAGTGTATGTT+TGG - chr1_3:3292529-3292548 Msa0097460:intron 25.0%
! CCAAACATACACTTAATTTA+TGG + chr1_3:3292526-3292545 Msa0097470:intron 25.0%
! AAATTTGTGGTGAAATGAAT+AGG - chr1_3:3293454-3293473 None:intergenic 25.0%
!! AACAATTATTCTAAGAAGGA+GGG - chr1_3:3293479-3293498 None:intergenic 25.0%
!! AAACAATTATTCTAAGAAGG+AGG - chr1_3:3293480-3293499 None:intergenic 25.0%
! CTCTAAATAATAGTCGTTTA+AGG - chr1_3:3293564-3293583 None:intergenic 25.0%
! AAACGACTATTATTTAGAGA+CGG + chr1_3:3293565-3293584 Msa0097470:intron 25.0%
! GCATTATTATCTAACTTTAG+TGG + chr1_3:3293590-3293609 Msa0097470:intron 25.0%
!!! GTCATTATAGTCATTTTGAA+AGG + chr1_3:3293883-3293902 Msa0097470:intron 25.0%
! CTAATGTTTACTTGAATAGT+CGG - chr1_3:3294046-3294065 None:intergenic 25.0%
!! TTTCGGTCCTTAAAATTTTA+GGG - chr1_3:3294177-3294196 None:intergenic 25.0%
!! ATTTCGGTCCTTAAAATTTT+AGG - chr1_3:3294178-3294197 None:intergenic 25.0%
! TGATAAGTTCATTAGAACAA+CGG + chr1_3:3294276-3294295 Msa0097470:CDS 25.0%
! AAAGAAAAAATTGTCAGTCT+AGG - chr1_3:3294443-3294462 None:intergenic 25.0%
! GTTATCTATCTTCCTATTAA+AGG - chr1_3:3294541-3294560 None:intergenic 25.0%
!! TTGAAGAATGTATTGCTATT+TGG + chr1_3:3294633-3294652 Msa0097470:intron 25.0%
! TTAAGTGATCAAATTCAGAT+GGG - chr1_3:3295410-3295429 None:intergenic 25.0%
! ATTAAGTGATCAAATTCAGA+TGG - chr1_3:3295411-3295430 None:intergenic 25.0%
! GAATTTGATCACTTAATGTA+AGG + chr1_3:3295414-3295433 Msa0097470:intron 25.0%
!!! AAATACAAAGGTGTTTTATC+TGG + chr1_3:3295449-3295468 Msa0097470:intron 25.0%
!!! AGCATTATTCCACTATTTTT+GGG - chr1_3:3295510-3295529 None:intergenic 25.0%
!! AAGCATTATTCCACTATTTT+TGG - chr1_3:3295511-3295530 None:intergenic 25.0%
! AATTCCATATCTCTTTCAAA+TGG + chr1_3:3295566-3295585 Msa0097470:intron 25.0%
! ATTCCATATCTCTTTCAAAT+GGG + chr1_3:3295567-3295586 Msa0097470:intron 25.0%
! CAGTTTCTGTTTAACATTAT+TGG + chr1_3:3295912-3295931 Msa0097470:intron 25.0%
!!! AAACGACTATTATTTTGAGA+CGG - chr1_3:3296053-3296072 None:intergenic 25.0%
! AGACATAAATAATGCTAAAG+AGG + chr1_3:3296266-3296285 Msa0097470:intron 25.0%
!! GAAAATAAAGTGTTCAACAA+GGG - chr1_3:3296353-3296372 None:intergenic 25.0%
! GAAAAAATAGGAAAGAAAAG+AGG - chr1_3:3296498-3296517 None:intergenic 25.0%
! AGAGAGAGATTTGAAAAAAT+AGG - chr1_3:3296510-3296529 None:intergenic 25.0%
! TAATGACAAGTGGATAAAAA+TGG - chr1_3:3296682-3296701 None:intergenic 25.0%
! GAAAACCAATGAACTATAAA+GGG - chr1_3:3296843-3296862 None:intergenic 25.0%
! AGAAAACCAATGAACTATAA+AGG - chr1_3:3296844-3296863 None:intergenic 25.0%
! CGAGTTCATTATTTCATTAA+TGG + chr1_3:3296988-3297007 Msa0097470:intron 25.0%
!!! TTTCACTTTTCAGTTCAATA+TGG - chr1_3:3297262-3297281 None:intergenic 25.0%
! TGAACTGAAAAGTGAAAATA+TGG + chr1_3:3297265-3297284 Msa0097470:intron 25.0%
!!! TTCTCGTTTTATTTTTTTGG+AGG - chr1_3:3297482-3297501 None:intergenic 25.0%
!!! GCATTCTCGTTTTATTTTTT+TGG - chr1_3:3297485-3297504 None:intergenic 25.0%
! ATTGTGTCAATAAAGCTAAT+AGG + chr1_3:3297713-3297732 Msa0097470:intron 25.0%
!!! ATAAAACTTGCTAACACTAT+TGG - chr1_3:3298471-3298490 None:intergenic 25.0%
!! AATGATATGATTTGGAAAGA+TGG - chr1_3:3298516-3298535 None:intergenic 25.0%
! TGAAGACCATAAACTAAATT+TGG + chr1_3:3298687-3298706 Msa0097470:intron 25.0%
! GAAGACCATAAACTAAATTT+GGG + chr1_3:3298688-3298707 Msa0097470:intron 25.0%
!! ATAAGCCCAAATTTAGTTTA+TGG - chr1_3:3298696-3298715 None:intergenic 25.0%
! CAACTTAGATAGATTGTTAT+AGG + chr1_3:3299382-3299401 Msa0097470:intron 25.0%
!! TAGCATGAATACAATTTTCT+GGG - chr1_3:3299438-3299457 None:intergenic 25.0%
!! CAATTTAGAACACAAACAAA+GGG - chr1_3:3299587-3299606 None:intergenic 25.0%
!! ACAATTTAGAACACAAACAA+AGG - chr1_3:3299588-3299607 None:intergenic 25.0%
! GTTTATGTAATATATGTTCG+AGG - chr1_3:3299884-3299903 None:intergenic 25.0%
! AATATCAGGTAAAGATTTAG+TGG - chr1_3:3300041-3300060 None:intergenic 25.0%
! TAATGTGAGAAAAGAAAAAG+GGG - chr1_3:3300090-3300109 None:intergenic 25.0%
! ATGCTTATTATACTTGGTTA+AGG - chr1_3:3300164-3300183 None:intergenic 25.0%
! TGGAATATGCTTATTATACT+TGG - chr1_3:3300170-3300189 None:intergenic 25.0%
!! AGAATTTTCACTTATGATCT+TGG + chr1_3:3300238-3300257 Msa0097470:intron 25.0%
! CTGTCTCTAATATAATTACA+AGG - chr1_3:3300271-3300290 None:intergenic 25.0%
!!! TAGTTTTACATTACAGAAGT+TGG - chr1_3:3300688-3300707 None:intergenic 25.0%
! TTGACACACTATTTATATAC+TGG + chr1_3:3300743-3300762 Msa0097470:three_prime_UTR 25.0%
! ATCACGGAAACTTAAGATTT+TGG - chr1_3:3291872-3291891 Msa0097460:intron 30.0%
TGCGTTGTTCTAATTTATCA+CGG - chr1_3:3291888-3291907 Msa0097460:intron 30.0%
TTTCAGATGGAGAAACTTTA+TGG - chr1_3:3291965-3291984 Msa0097460:intron 30.0%
!! TTGTACTACTGTTTTTCAGA+TGG - chr1_3:3291978-3291997 Msa0097460:intron 30.0%
TTCACTCAAAATCAATATCC+TGG + chr1_3:3292498-3292517 Msa0097470:intron 30.0%
TTTGGTTATGACTCATGATT+GGG - chr1_3:3292683-3292702 Msa0097460:intron 30.0%
!! TTTTGGTTATGACTCATGAT+TGG - chr1_3:3292684-3292703 Msa0097460:intron 30.0%
TTTCTCCATGAGATAATCAA+AGG + chr1_3:3292860-3292879 Msa0097470:five_prime_UTR 30.0%
TACTTCCTTTGATTATCTCA+TGG - chr1_3:3292868-3292887 Msa0097460:CDS 30.0%
GAGATAATCAAAGGAAGTAA+CGG + chr1_3:3292869-3292888 Msa0097470:five_prime_UTR 30.0%
ATAACATTAGTAAGCACTCT+GGG - chr1_3:3293127-3293146 None:intergenic 30.0%
CTTGAAAAAAAAAGTAAGGG+TGG - chr1_3:3293854-3293873 None:intergenic 30.0%
! TGTAAATTTGAGGCACTAAA+TGG - chr1_3:3293914-3293933 None:intergenic 30.0%
CGACTATTCAAGTAAACATT+AGG + chr1_3:3294044-3294063 Msa0097470:intron 30.0%
TGATTTATAGGACCGTAAAA+TGG + chr1_3:3294134-3294153 Msa0097470:intron 30.0%
!!! AATTTTAGGGTCAAGCAATT+TGG - chr1_3:3294164-3294183 None:intergenic 30.0%
! TGCTTGACCCTAAAATTTTA+AGG + chr1_3:3294167-3294186 Msa0097470:intron 30.0%
!!! AAGGTGATAGTTTTAACTTC+AGG + chr1_3:3294409-3294428 Msa0097470:intron 30.0%
TACAAGCTCTTTACTTAGAA+GGG + chr1_3:3294471-3294490 Msa0097470:intron 30.0%
TCATATACTGCAATTTAAGC+TGG + chr1_3:3294903-3294922 Msa0097470:intron 30.0%
ATTCTATGTTTCACAAGTCT+TGG + chr1_3:3295041-3295060 Msa0097470:intron 30.0%
! TTTTCATTAAAGTGATTCCG+TGG + chr1_3:3295237-3295256 Msa0097470:intron 30.0%
! TAATCAATTTGGGATGCTAT+TGG - chr1_3:3295298-3295317 None:intergenic 30.0%
!!! GCATTATTCCACTATTTTTG+GGG - chr1_3:3295509-3295528 None:intergenic 30.0%
AAACCCATTTGAAAGAGATA+TGG - chr1_3:3295573-3295592 None:intergenic 30.0%
! TAAATTTCTAGGTTCAAACC+TGG + chr1_3:3295711-3295730 Msa0097470:intron 30.0%
AGACTCAGACTATATATGTA+TGG + chr1_3:3295807-3295826 Msa0097470:CDS 30.0%
TATGGTTTGATGCTTTACTA+GGG + chr1_3:3295825-3295844 Msa0097470:CDS 30.0%
! TTAACATTATTGGTGCTTGA+CGG + chr1_3:3295922-3295941 Msa0097470:intron 30.0%
AGTTAGTGAAGTAGTTAAGT+TGG + chr1_3:3296165-3296184 Msa0097470:intron 30.0%
! GGAAAATAAAGTGTTCAACA+AGG - chr1_3:3296354-3296373 None:intergenic 30.0%
AGCTGCACATAAAAAAAGAA+AGG - chr1_3:3296375-3296394 None:intergenic 30.0%
GAAACAGTGTTTAGTAAATC+AGG - chr1_3:3296430-3296449 None:intergenic 30.0%
! TAAACACTGTTTCTTCAAGT+TGG + chr1_3:3296437-3296456 Msa0097470:CDS 30.0%
TAAGAGAGAATAATGACAAG+TGG - chr1_3:3296692-3296711 None:intergenic 30.0%
TTATAGTCAATCCCAAATAC+TGG + chr1_3:3296709-3296728 Msa0097470:intron 30.0%
TATAGTCAATCCCAAATACT+GGG + chr1_3:3296710-3296729 Msa0097470:intron 30.0%
AAAAGGCTATCATACTTGTT+CGG + chr1_3:3296733-3296752 Msa0097470:intron 30.0%
TGGTGTGTAATTACTTAAGA+TGG - chr1_3:3296786-3296805 None:intergenic 30.0%
! CACAAAAATACAGATGGATT+TGG - chr1_3:3296806-3296825 None:intergenic 30.0%
!! ATCCATCTGTATTTTTGTGA+TGG + chr1_3:3296807-3296826 Msa0097470:intron 30.0%
AACCATCACAAAAATACAGA+TGG - chr1_3:3296812-3296831 None:intergenic 30.0%
TTCATCCCTTTATAGTTCAT+TGG + chr1_3:3296835-3296854 Msa0097470:intron 30.0%
ATTATATAGCTTCTTCCCTT+AGG + chr1_3:3296940-3296959 Msa0097470:intron 30.0%
GAATGCTTTGTGTAAGTAAT+AGG - chr1_3:3296969-3296988 None:intergenic 30.0%
!!! TAATGGTTTTGTTACTCTGT+AGG + chr1_3:3297005-3297024 Msa0097470:intron 30.0%
!! TTGACAAAGGTATTAGTACT+CGG + chr1_3:3297117-3297136 Msa0097470:intron 30.0%
!!! TGTTTCTTTTTGAGGTAACT+TGG + chr1_3:3297157-3297176 Msa0097470:intron 30.0%
! CGATGATTTCTGAATTTTCA+AGG + chr1_3:3297677-3297696 Msa0097470:intron 30.0%
!! TTCTGAATTTTCAAGGAAAC+AGG + chr1_3:3297684-3297703 Msa0097470:intron 30.0%
!! TCTGAATTTTCAAGGAAACA+GGG + chr1_3:3297685-3297704 Msa0097470:intron 30.0%
!!! TTTTTTAATGAACCGTGAAC+TGG + chr1_3:3298139-3298158 Msa0097470:intron 30.0%
TTGACACTCAGCATTAATTT+GGG - chr1_3:3298165-3298184 None:intergenic 30.0%
TTTGACACTCAGCATTAATT+TGG - chr1_3:3298166-3298185 None:intergenic 30.0%
ACTTAAATCTGGTCAAAATG+TGG + chr1_3:3298536-3298555 Msa0097470:intron 30.0%
ATCTTAACAAGTTTACAAGG+AGG - chr1_3:3298586-3298605 None:intergenic 30.0%
CAGATTTAGAAAACTTTGCT+TGG - chr1_3:3298723-3298742 None:intergenic 30.0%
AACTTACTAACCAAATCGTT+TGG - chr1_3:3298843-3298862 None:intergenic 30.0%
!! AACGATTTGGTTAGTAAGTT+TGG + chr1_3:3298843-3298862 Msa0097470:CDS 30.0%
!! ACGATTTGGTTAGTAAGTTT+GGG + chr1_3:3298844-3298863 Msa0097470:CDS 30.0%
! CGAAATCTCTTTCACTATTT+TGG + chr1_3:3299064-3299083 Msa0097470:intron 30.0%
AATCTTCTTAATAGGACTCT+AGG + chr1_3:3299092-3299111 Msa0097470:CDS 30.0%
TAAACACAGGACAAAATAGA+AGG - chr1_3:3299303-3299322 None:intergenic 30.0%
TCTGTTTAGATTGTTTCATC+CGG - chr1_3:3299338-3299357 None:intergenic 30.0%
! GTAGCATGAATACAATTTTC+TGG - chr1_3:3299439-3299458 None:intergenic 30.0%
ATCAACAAATGGTTGAAAGA+TGG - chr1_3:3299645-3299664 None:intergenic 30.0%
! AACCATTTGTTGATAAGTTG+TGG + chr1_3:3299651-3299670 Msa0097470:intron 30.0%
! ACCATTTGTTGATAAGTTGT+GGG + chr1_3:3299652-3299671 Msa0097470:intron 30.0%
TAATGCTGGTAATTCCTATA+TGG + chr1_3:3299789-3299808 Msa0097470:CDS 30.0%
AGAAAAAGGGGTTTAGTATT+TGG - chr1_3:3300078-3300097 None:intergenic 30.0%
AAACGAAAAGAAGTGAGATA+TGG - chr1_3:3300190-3300209 None:intergenic 30.0%
GATTGAAAATCAAACTGAAG+TGG + chr1_3:3300541-3300560 Msa0097470:CDS 30.0%
! AAGAAGACTCTGAAAAGTAA+AGG + chr1_3:3300590-3300609 Msa0097470:CDS 30.0%
! AGAAGACTCTGAAAAGTAAA+GGG + chr1_3:3300591-3300610 Msa0097470:CDS 30.0%
!! CTTTTTGGGAATAAAGTTCA+TGG + chr1_3:3300848-3300867 Msa0097470:three_prime_UTR 30.0%
!!! AGATTTTGGAACGAGATTCA+GGG - chr1_3:3291858-3291877 Msa0097460:intron 35.0%
!!! AAGATTTTGGAACGAGATTC+AGG - chr1_3:3291859-3291878 Msa0097460:intron 35.0%
TGGAACAACATCCTATATCA+TGG - chr1_3:3291945-3291964 Msa0097460:intron 35.0%
TTTATGGTGGTTCAGTTACT+GGG - chr1_3:3292303-3292322 Msa0097460:intron 35.0%
ACTGAACCACCATAAACTTA+TGG + chr1_3:3292307-3292326 Msa0097470:intron 35.0%
AACAGACCATAAGTTTATGG+TGG - chr1_3:3292316-3292335 Msa0097460:intron 35.0%
CCAAACAGACCATAAGTTTA+TGG - chr1_3:3292319-3292338 Msa0097460:intron 35.0%
CCATAAACTTATGGTCTGTT+TGG + chr1_3:3292316-3292335 Msa0097470:intron 35.0%
! GATGATGATGATGATGATCA+AGG - chr1_3:3292602-3292621 Msa0097460:intron 35.0%
! ACTCATGATTGGGATTTGTT+AGG - chr1_3:3292673-3292692 Msa0097460:intron 35.0%
! AGAAGTGTGGATGAAATTGT+GGG + chr1_3:3292964-3292983 Msa0097470:five_prime_UTR 35.0%
! GAACTTCATGGAAGAGTTTT+AGG + chr1_3:3293054-3293073 Msa0097470:five_prime_UTR 35.0%
TAACATTAGTAAGCACTCTG+GGG - chr1_3:3293126-3293145 None:intergenic 35.0%
GATAACATTAGTAAGCACTC+TGG - chr1_3:3293128-3293147 None:intergenic 35.0%
GTGCTTACTAATGTTATCTG+CGG + chr1_3:3293130-3293149 Msa0097470:five_prime_UTR 35.0%
TGCTTACTAATGTTATCTGC+GGG + chr1_3:3293131-3293150 Msa0097470:five_prime_UTR 35.0%
CGAGGCAGCATAAAAAAAAA+TGG + chr1_3:3293162-3293181 Msa0097470:exon 35.0%
GTGAAACATTGGAATTGGAA+CGG - chr1_3:3293237-3293256 None:intergenic 35.0%
!! AATAGGGTTTGTTGGATTTG+AGG - chr1_3:3293261-3293280 None:intergenic 35.0%
GAAATGGAAATAGGGTTTGT+TGG - chr1_3:3293269-3293288 None:intergenic 35.0%
GAAGAAGGGAAATGGAAATA+GGG - chr1_3:3293277-3293296 None:intergenic 35.0%
AGAAGAAGGGAAATGGAAAT+AGG - chr1_3:3293278-3293297 None:intergenic 35.0%
TTTGTCATCATTTGAGGAAG+TGG - chr1_3:3293329-3293348 None:intergenic 35.0%
ATAGGGTTTGTCATCATTTG+AGG - chr1_3:3293335-3293354 None:intergenic 35.0%
AATTAGTTCGAGACAGAGAA+AGG - chr1_3:3293514-3293533 None:intergenic 35.0%
! TCGTTTAAGGTTTGTGACAT+TGG - chr1_3:3293551-3293570 None:intergenic 35.0%
!! CTAACTTTAGTGGGTTAGTT+TGG + chr1_3:3293600-3293619 Msa0097470:intron 35.0%
CGTTGTATGTAATTTGACAG+CGG + chr1_3:3293675-3293694 Msa0097470:intron 35.0%
! AATTTTCTCACCGTGTTCAT+CGG - chr1_3:3293735-3293754 None:intergenic 35.0%
AAAAAAAGTAAGGGTGGAAG+TGG - chr1_3:3293848-3293867 None:intergenic 35.0%
TTTATAGGACCGTAAAATGG+AGG + chr1_3:3294137-3294156 Msa0097470:intron 35.0%
! CAATTTGGTCCTCCATTTTA+CGG - chr1_3:3294149-3294168 None:intergenic 35.0%
ATTTACCGAGCTGATTATGA+GGG + chr1_3:3294358-3294377 Msa0097470:CDS 35.0%
AAATTCCCTCATAATCAGCT+CGG - chr1_3:3294366-3294385 None:intergenic 35.0%
TGTCAGCTGTGAAGAATATA+AGG + chr1_3:3294390-3294409 Msa0097470:CDS 35.0%
GTACAAGCTCTTTACTTAGA+AGG + chr1_3:3294470-3294489 Msa0097470:intron 35.0%
!! CTTGCTTCTAGAACTTCAAA+TGG + chr1_3:3294502-3294521 Msa0097470:intron 35.0%
!! AATGTATTGCTATTTGGTGC+AGG + chr1_3:3294639-3294658 Msa0097470:intron 35.0%
TTCTTGAAACACAAGGCTTA+AGG - chr1_3:3294705-3294724 None:intergenic 35.0%
! TCCTCTTTTCTTGAAACACA+AGG - chr1_3:3294712-3294731 None:intergenic 35.0%
GTCAAAATATCAGAAGTCAC+TGG + chr1_3:3294750-3294769 Msa0097470:CDS 35.0%
AAAATATCAGAAGTCACTGG+AGG + chr1_3:3294753-3294772 Msa0097470:CDS 35.0%
AAAGATGGCTGCACAAAATT+TGG - chr1_3:3294796-3294815 None:intergenic 35.0%
ATTCCTTTACCTCGTGTAAA+CGG - chr1_3:3294819-3294838 None:intergenic 35.0%
TTACACGAGGTAAAGGAATA+TGG + chr1_3:3294820-3294839 Msa0097470:intron 35.0%
GAAATGTAACAGACAGATAG+AGG - chr1_3:3294883-3294902 None:intergenic 35.0%
TCACTTGAGATTGTTCACAA+TGG + chr1_3:3294965-3294984 Msa0097470:intron 35.0%
!! ATTTTTATTTGCAACACCCC+CGG + chr1_3:3295159-3295178 Msa0097470:intron 35.0%
TCCGTGGTCATTACATATAT+TGG + chr1_3:3295253-3295272 Msa0097470:intron 35.0%
CCCAATATATGTAATGACCA+CGG - chr1_3:3295257-3295276 None:intergenic 35.0%
CCGTGGTCATTACATATATT+GGG + chr1_3:3295254-3295273 Msa0097470:intron 35.0%
ACATATATTGGGTGTAGAAG+AGG + chr1_3:3295265-3295284 Msa0097470:intron 35.0%
CATATATTGGGTGTAGAAGA+GGG + chr1_3:3295266-3295285 Msa0097470:intron 35.0%
TAAAACAAACACACGGACAA+GGG - chr1_3:3295339-3295358 None:intergenic 35.0%
ATAAAACAAACACACGGACA+AGG - chr1_3:3295340-3295359 None:intergenic 35.0%
TCATGAAATACCTATCTCAC+AGG - chr1_3:3295547-3295566 None:intergenic 35.0%
GTATGGTTTGATGCTTTACT+AGG + chr1_3:3295824-3295843 Msa0097470:CDS 35.0%
GAAATCTAATAGAAGAGCCA+GGG - chr1_3:3295893-3295912 None:intergenic 35.0%
TGAAATCTAATAGAAGAGCC+AGG - chr1_3:3295894-3295913 None:intergenic 35.0%
!!! GACTATTATTTTGAGACGGA+GGG - chr1_3:3296049-3296068 None:intergenic 35.0%
!! AAGAGGCAACTATTTTGAGA+CGG + chr1_3:3296283-3296302 Msa0097470:intron 35.0%
!! GCTGTACTCTTAACTTGTTA+AGG + chr1_3:3296612-3296631 Msa0097470:intron 35.0%
!! TCTTAACTTGTTAAGGCAGA+AGG + chr1_3:3296619-3296638 Msa0097470:intron 35.0%
! ATAGCCTTTTCCCAGTATTT+GGG - chr1_3:3296723-3296742 None:intergenic 35.0%
GGTCAAAATCTCTTTCTACT+CGG + chr1_3:3296754-3296773 Msa0097470:intron 35.0%
GTAAGTAATAGGACTCCTAA+GGG - chr1_3:3296958-3296977 None:intergenic 35.0%
TGTAAGTAATAGGACTCCTA+AGG - chr1_3:3296959-3296978 None:intergenic 35.0%
! TACGTTTCCATGCTGTTTAT+TGG + chr1_3:3297034-3297053 Msa0097470:CDS 35.0%
ATACCTTTGTCAAGAATCCA+TGG - chr1_3:3297110-3297129 None:intergenic 35.0%
CATCTCTTCTAAGTATGAGA+TGG - chr1_3:3297208-3297227 None:intergenic 35.0%
!!! TGTTCACAATGGTTTTGGTT+TGG - chr1_3:3297351-3297370 None:intergenic 35.0%
! TGTACTGTTCACAATGGTTT+TGG - chr1_3:3297356-3297375 None:intergenic 35.0%
TGTGTGATTGAAAACTGAAG+TGG - chr1_3:3297400-3297419 None:intergenic 35.0%
! ACTTCAGTTTTCAATCACAC+AGG + chr1_3:3297399-3297418 Msa0097470:intron 35.0%
! TGAACTGAACTTTGAGAAGT+TGG + chr1_3:3298013-3298032 Msa0097470:intron 35.0%
GCTATCAAAAAAGAGGAGAA+AGG - chr1_3:3298218-3298237 None:intergenic 35.0%
!!! TCTCCTCTTTTTTGATAGCT+AGG + chr1_3:3298219-3298238 Msa0097470:intron 35.0%
GTTCAATAACATTGAGGTGA+TGG + chr1_3:3298307-3298326 Msa0097470:intron 35.0%
AATCTGGTCAAAATGTGGTT+AGG + chr1_3:3298541-3298560 Msa0097470:intron 35.0%
ATGTTAGGATGGTATGAAGA+TGG + chr1_3:3298791-3298810 Msa0097470:intron 35.0%
TGTTAGGATGGTATGAAGAT+GGG + chr1_3:3298792-3298811 Msa0097470:intron 35.0%
! GCTCAAAGTACCAATTGTAT+TGG - chr1_3:3298970-3298989 None:intergenic 35.0%
TGTTACAAGCAATGAAAGCA+AGG - chr1_3:3298992-3299011 None:intergenic 35.0%
!!! ATCTCTTTCACTATTTTGGC+AGG + chr1_3:3299068-3299087 Msa0097470:intron 35.0%
TGGCAGGAAATCTTCTTAAT+AGG + chr1_3:3299084-3299103 Msa0097470:intron 35.0%
TGCAGAAGGAAATGCATTTA+AGG + chr1_3:3299166-3299185 Msa0097470:CDS 35.0%
TAACCTCAAACTGTTGCAAA+AGG - chr1_3:3299269-3299288 None:intergenic 35.0%
! ATGAATACAATTTTCTGGGC+CGG - chr1_3:3299434-3299453 None:intergenic 35.0%
TCCCACAACTTATCAACAAA+TGG - chr1_3:3299656-3299675 None:intergenic 35.0%
TTGATCAACCTTTGTGTTAC+AGG - chr1_3:3299683-3299702 None:intergenic 35.0%
TATGTTCGAGGATAATACCT+TGG - chr1_3:3299872-3299891 None:intergenic 35.0%
TATATTCTCCAACTCAAGCT+CGG - chr1_3:3300329-3300348 None:intergenic 35.0%
TGGAGAATATATGCTCAACT+TGG + chr1_3:3300338-3300357 Msa0097470:CDS 35.0%
ATTGTAGAGAGATACCAAGT+GGG + chr1_3:3300466-3300485 Msa0097470:intron 35.0%
! TTTTCAATCCTAGCAAAGAC+TGG - chr1_3:3300530-3300549 None:intergenic 35.0%
AAACAAGCTCAAGAAGTTGT+TGG + chr1_3:3300620-3300639 Msa0097470:CDS 35.0%
GCATTATGCATGTGTATGTA+TGG + chr1_3:3300796-3300815 Msa0097470:intron 35.0%
!!! GATTTTGGAACGAGATTCAG+GGG - chr1_3:3291857-3291876 Msa0097460:intron 40.0%
GTTGTCTCTTTATGTAGAGC+TGG - chr1_3:3292014-3292033 Msa0097460:intron 40.0%
GTTTATGGTGGTTCAGTTAC+TGG - chr1_3:3292304-3292323 Msa0097460:intron 40.0%
AAACACATGTGAGACTGTTC+AGG + chr1_3:3292373-3292392 Msa0097470:intron 40.0%
CTTATTTCCATAAGCACTCC+AGG + chr1_3:3292431-3292450 Msa0097470:intron 40.0%
! ATAGAATCCTGGAGTGCTTA+TGG - chr1_3:3292441-3292460 Msa0097460:intron 40.0%
AGTGTATGTTTGGTTATGCC+AGG - chr1_3:3292519-3292538 Msa0097460:intron 40.0%
TCAAGGTCTTCACGTAAGTA+AGG - chr1_3:3292585-3292604 Msa0097460:intron 40.0%
!!! GTGGTTACTGGTTTTGGTTT+TGG - chr1_3:3292701-3292720 Msa0097460:intron 40.0%
!! TTATTGCTTGCTGTGGTTAC+TGG - chr1_3:3292713-3292732 Msa0097460:intron 40.0%
CAAGCAATAACTTCACCATC+AGG + chr1_3:3292723-3292742 Msa0097470:five_prime_UTR 40.0%
TGTATTTCGCTTAGTCCTGA+TGG - chr1_3:3292741-3292760 Msa0097460:CDS 40.0%
CAAGTTGTTGGGAATGTTGA+TGG - chr1_3:3292774-3292793 Msa0097460:CDS 40.0%
CTTCTACTTGGAACTTCGAA+CGG - chr1_3:3292834-3292853 Msa0097460:CDS 40.0%
AAGGAAGTAACGGTATCATC+AGG + chr1_3:3292879-3292898 Msa0097470:five_prime_UTR 40.0%
ATCAGGTTCAAGATCAACGA+TGG + chr1_3:3292896-3292915 Msa0097470:five_prime_UTR 40.0%
TTCAAGATCAACGATGGCAT+GGG + chr1_3:3292902-3292921 Msa0097470:five_prime_UTR 40.0%
GTTAAGAGAGATGAGAAGTG+TGG + chr1_3:3292951-3292970 Msa0097470:five_prime_UTR 40.0%
! GAGAAGTGTGGATGAAATTG+TGG + chr1_3:3292963-3292982 Msa0097470:five_prime_UTR 40.0%
ACGGTTGCGTTAGATATCTA+AGG + chr1_3:3293003-3293022 Msa0097470:five_prime_UTR 40.0%
GTTGCGTTAGATATCTAAGG+CGG + chr1_3:3293006-3293025 Msa0097470:five_prime_UTR 40.0%
! AGATATCTAAGGCGGAGAAT+CGG + chr1_3:3293014-3293033 Msa0097470:five_prime_UTR 40.0%
ATCGGAAAGTTTCGTCGTAA+AGG + chr1_3:3293032-3293051 Msa0097470:five_prime_UTR 40.0%
TTCGTCGTAAAGGAACTTCA+TGG + chr1_3:3293042-3293061 Msa0097470:five_prime_UTR 40.0%
CTACCGTATGATGCATCTAA+GGG + chr1_3:3293092-3293111 Msa0097470:five_prime_UTR 40.0%
ATTGGAACGGAGTGAAAGAA+TGG - chr1_3:3293224-3293243 None:intergenic 40.0%
GAGGTGTGAAACATTGGAAT+TGG - chr1_3:3293242-3293261 None:intergenic 40.0%
! GGATTTGAGGTGTGAAACAT+TGG - chr1_3:3293248-3293267 None:intergenic 40.0%
AAGAAGGAGGGACAAATTTG+TGG - chr1_3:3293467-3293486 None:intergenic 40.0%
CGACTATTATTTAGAGACGG+AGG + chr1_3:3293568-3293587 Msa0097470:intron 40.0%
! TGTAATTTGACAGCGGCTTT+TGG + chr1_3:3293682-3293701 Msa0097470:intron 40.0%
! GTAATTTGACAGCGGCTTTT+GGG + chr1_3:3293683-3293702 Msa0097470:intron 40.0%
CTTGTGAAATGAGATTGCAG+TGG - chr1_3:3293796-3293815 None:intergenic 40.0%
ACGGACATTGTTCACGTTAA+GGG - chr1_3:3293952-3293971 None:intergenic 40.0%
CATTTACCGAGCTGATTATG+AGG + chr1_3:3294357-3294376 Msa0097470:CDS 40.0%
TTTCCCATCATCAGATTGAG+AGG - chr1_3:3294566-3294585 None:intergenic 40.0%
TTGAAACACAAGGCTTAAGG+TGG - chr1_3:3294702-3294721 None:intergenic 40.0%
GCCTTGTGTTTCAAGAAAAG+AGG + chr1_3:3294708-3294727 Msa0097470:CDS 40.0%
TTTCCGTTTACACGAGGTAA+AGG + chr1_3:3294813-3294832 Msa0097470:intron 40.0%
ATAGTCATGTCATCTCATGC+CGG - chr1_3:3295181-3295200 None:intergenic 40.0%
AAAACAAACACACGGACAAG+GGG - chr1_3:3295338-3295357 None:intergenic 40.0%
!! ATTTTTGGGGAAGCATGCAA+GGG - chr1_3:3295496-3295515 None:intergenic 40.0%
!!! TATTTTTGGGGAAGCATGCA+AGG - chr1_3:3295497-3295516 None:intergenic 40.0%
GTTCAAACCTGGATCAAAAG+TGG + chr1_3:3295722-3295741 Msa0097470:CDS 40.0%
! ATAGTCTGAGTCTTGTCACT+CGG - chr1_3:3295800-3295819 None:intergenic 40.0%
TATACAGCATAGCAGAAGTG+TGG - chr1_3:3296021-3296040 None:intergenic 40.0%
!!! CGACTATTATTTTGAGACGG+AGG - chr1_3:3296050-3296069 None:intergenic 40.0%
! TTAGTAAATCAGGTTGCTCC+TGG - chr1_3:3296420-3296439 None:intergenic 40.0%
CAATCCCAAATACTGGGAAA+AGG + chr1_3:3296716-3296735 Msa0097470:intron 40.0%
! GATAGCCTTTTCCCAGTATT+TGG - chr1_3:3296724-3296743 None:intergenic 40.0%
! TGGTTTTCTTTTGTGACTGC+AGG + chr1_3:3296855-3296874 Msa0097470:intron 40.0%
AGCCTTCCCAAAATGGTATA+TGG + chr1_3:3297084-3297103 Msa0097470:CDS 40.0%
! CCATGGCCATATACCATTTT+GGG - chr1_3:3297093-3297112 None:intergenic 40.0%
! TCCATGGCCATATACCATTT+TGG - chr1_3:3297094-3297113 None:intergenic 40.0%
GTTCAGTGTACTGTTCACAA+TGG - chr1_3:3297362-3297381 None:intergenic 40.0%
GAAGTGGTAATTGAGCAGTT+TGG - chr1_3:3297384-3297403 None:intergenic 40.0%
TGACATAGCAGAGATTGAAG+TGG - chr1_3:3297518-3297537 None:intergenic 40.0%
! TCTTTGTTGCATTGACCACT+TGG + chr1_3:3297837-3297856 Msa0097470:intron 40.0%
! CTGACATGCTTTCAGACTTT+TGG + chr1_3:3297861-3297880 Msa0097470:intron 40.0%
TCAATCACGTACTCATTGCT+AGG - chr1_3:3297889-3297908 None:intergenic 40.0%
GAGCTTGAAATATGGTGAGT+CGG - chr1_3:3297965-3297984 None:intergenic 40.0%
CAGGAGAAGAGCTTGAAATA+TGG - chr1_3:3297973-3297992 None:intergenic 40.0%
! ACTGAACTTTGAGAAGTTGG+TGG + chr1_3:3298016-3298035 Msa0097470:intron 40.0%
AAACTGCAAAAGAGCCAAAC+TGG - chr1_3:3298090-3298109 None:intergenic 40.0%
!!! AGTTTGGCTCTTTTGCAGTT+TGG + chr1_3:3298089-3298108 Msa0097470:intron 40.0%
! CATTAATTTGGGCCAGTTCA+CGG - chr1_3:3298154-3298173 None:intergenic 40.0%
TGTCAAATCTGAGCAAAGCA+AGG + chr1_3:3298179-3298198 Msa0097470:intron 40.0%
GTCAAATCTGAGCAAAGCAA+GGG + chr1_3:3298180-3298199 Msa0097470:intron 40.0%
TGGCCTAGCTATCAAAAAAG+AGG - chr1_3:3298225-3298244 None:intergenic 40.0%
TGGTCAAAATGTGGTTAGGA+TGG + chr1_3:3298545-3298564 Msa0097470:intron 40.0%
GGTCAAAATGTGGTTAGGAT+GGG + chr1_3:3298546-3298565 Msa0097470:intron 40.0%
GTCAAAATGTGGTTAGGATG+GGG + chr1_3:3298547-3298566 Msa0097470:intron 40.0%
TCAAAATGTGGTTAGGATGG+GGG + chr1_3:3298548-3298567 Msa0097470:intron 40.0%
! TTAGGATGGGGGTATATGAT+TGG + chr1_3:3298559-3298578 Msa0097470:intron 40.0%
TACGCTTGAACCAAACGATT+TGG + chr1_3:3298830-3298849 Msa0097470:CDS 40.0%
TAGATACTTCTTCCTCAGAG+AGG + chr1_3:3298878-3298897 Msa0097470:CDS 40.0%
AGGTGGAATTTGGCAATGAT+GGG + chr1_3:3298898-3298917 Msa0097470:CDS 40.0%
GCACATCTTGCCAATACAAT+TGG + chr1_3:3298957-3298976 Msa0097470:CDS 40.0%
AAAGAACTGCCAATCAACAC+TGG + chr1_3:3299124-3299143 Msa0097470:CDS 40.0%
!! AATTCACTGCCAGTGTTGAT+TGG - chr1_3:3299136-3299155 None:intergenic 40.0%
CATTTAAGGACAATGTAGCG+AGG + chr1_3:3299180-3299199 Msa0097470:CDS 40.0%
! ATGCCTTTTGCAACAGTTTG+AGG + chr1_3:3299263-3299282 Msa0097470:intron 40.0%
GTTTAGATTGTTTCATCCGG+CGG - chr1_3:3299335-3299354 None:intergenic 40.0%
! TGAATACAATTTTCTGGGCC+GGG - chr1_3:3299433-3299452 None:intergenic 40.0%
TTGCTTAAAGAGAGACCAAG+GGG - chr1_3:3299824-3299843 None:intergenic 40.0%
CTTGCTTAAAGAGAGACCAA+GGG - chr1_3:3299825-3299844 None:intergenic 40.0%
TTCACTTATGATCTTGGAGC+AGG + chr1_3:3300244-3300263 Msa0097470:intron 40.0%
AGTAACAGGAGATAGTGCAA+TGG - chr1_3:3300306-3300325 None:intergenic 40.0%
TAAGATAGAGAGAGATACCC+AGG - chr1_3:3300393-3300412 None:intergenic 40.0%
CATTGTAGAGAGATACCAAG+TGG + chr1_3:3300465-3300484 Msa0097470:intron 40.0%
TTGTAGAGAGATACCAAGTG+GGG + chr1_3:3300467-3300486 Msa0097470:intron 40.0%
ACTGAAGTGGAAGAAGACAA+AGG + chr1_3:3300554-3300573 Msa0097470:CDS 40.0%
CTGAAGTGGAAGAAGACAAA+GGG + chr1_3:3300555-3300574 Msa0097470:CDS 40.0%
TGAAGTGGAAGAAGACAAAG+GGG + chr1_3:3300556-3300575 Msa0097470:CDS 40.0%
! AGCTTTTGCAGGAGCAGTTT+TGG - chr1_3:3291809-3291828 Msa0097460:CDS 45.0%
! TCGGAGGAAAAAGCTTTTGC+AGG - chr1_3:3291820-3291839 Msa0097460:CDS 45.0%
!! AGGGGCATTACTTGCTTCTT+CGG - chr1_3:3291839-3291858 Msa0097460:intron 45.0%
CAACATCCTATATCATGGCG+AGG - chr1_3:3291940-3291959 Msa0097460:intron 45.0%
GTCTTCACGTAAGTAAGGAC+TGG - chr1_3:3292580-3292599 Msa0097460:intron 45.0%
!!! CTTGCTGTGGTTACTGGTTT+TGG - chr1_3:3292707-3292726 Msa0097460:intron 45.0%
! GGTGAAGTTATTGCTTGCTG+TGG - chr1_3:3292720-3292739 Msa0097460:CDS 45.0%
! GTTGTTGGGAATGTTGATGG+CGG - chr1_3:3292771-3292790 Msa0097460:CDS 45.0%
! CGAACGTGACTCAAGTTGTT+GGG - chr1_3:3292785-3292804 Msa0097460:CDS 45.0%
!! GAGAAAGAAGCGCTTCTACT+TGG - chr1_3:3292846-3292865 Msa0097460:CDS 45.0%
GTTCAAGATCAACGATGGCA+TGG + chr1_3:3292901-3292920 Msa0097470:five_prime_UTR 45.0%
GGATGAAATTGTGGGAAGAG+AGG + chr1_3:3292972-3292991 Msa0097470:five_prime_UTR 45.0%
GGGAAGAGAGGAAGAAGAAA+CGG + chr1_3:3292984-3293003 Msa0097470:five_prime_UTR 45.0%
GCTACCGTATGATGCATCTA+AGG + chr1_3:3293091-3293110 Msa0097470:five_prime_UTR 45.0%
CTGCCCTTAGATGCATCATA+CGG - chr1_3:3293098-3293117 None:intergenic 45.0%
TATCTGCGGGAAAAGAAACG+AGG + chr1_3:3293144-3293163 Msa0097470:five_prime_UTR 45.0%
CTCTTGGAGAAGAAGGGAAA+TGG - chr1_3:3293285-3293304 None:intergenic 45.0%
AAGCTGCTCTTGGAGAAGAA+GGG - chr1_3:3293291-3293310 None:intergenic 45.0%
AAAGCTGCTCTTGGAGAAGA+AGG - chr1_3:3293292-3293311 None:intergenic 45.0%
TTGCAGAAGAAAGCTGCTCT+TGG - chr1_3:3293301-3293320 None:intergenic 45.0%
AGAGGGGTTGTGATGACATA+GGG - chr1_3:3293352-3293371 None:intergenic 45.0%
AAGAGGGGTTGTGATGACAT+AGG - chr1_3:3293353-3293372 None:intergenic 45.0%
GAATAAGCGCTACCCATATG+GGG - chr1_3:3293394-3293413 None:intergenic 45.0%
GGAATAAGCGCTACCCATAT+GGG - chr1_3:3293395-3293414 None:intergenic 45.0%
TGGAATAAGCGCTACCCATA+TGG - chr1_3:3293396-3293415 None:intergenic 45.0%
AGGTACCTGAAATCGAGCAA+TGG - chr1_3:3293434-3293453 None:intergenic 45.0%
TGAGATTGCAGTGGTCAGTA+GGG - chr1_3:3293787-3293806 None:intergenic 45.0%
ATGAGATTGCAGTGGTCAGT+AGG - chr1_3:3293788-3293807 None:intergenic 45.0%
CACAAGCTTACAAGACGCTT+TGG + chr1_3:3293810-3293829 Msa0097470:CDS 45.0%
GACGGACATTGTTCACGTTA+AGG - chr1_3:3293953-3293972 None:intergenic 45.0%
CAAGCATGAAGCAGTTGTGA+AGG + chr1_3:3294303-3294322 Msa0097470:CDS 45.0%
!! TATTCGAGAGTGCTTGCCAA+TGG + chr1_3:3294331-3294350 Msa0097470:CDS 45.0%
AGCTCGGTAAATGTCACCAT+TGG - chr1_3:3294350-3294369 None:intergenic 45.0%
ACTGCCTCTCAATCTGATGA+TGG + chr1_3:3294559-3294578 Msa0097470:intron 45.0%
CTGCCTCTCAATCTGATGAT+GGG + chr1_3:3294560-3294579 Msa0097470:intron 45.0%
!! CTATTTGGTGCAGGATGAGA+AGG + chr1_3:3294648-3294667 Msa0097470:intron 45.0%
ACACAAGGCTTAAGGTGGAT+CGG - chr1_3:3294697-3294716 None:intergenic 45.0%
ACCTCGTGTAAACGGAAAGA+TGG - chr1_3:3294811-3294830 None:intergenic 45.0%
TAGTCATGTCATCTCATGCC+GGG - chr1_3:3295180-3295199 None:intergenic 45.0%
GCATGCTTCCCCAAAAATAG+TGG + chr1_3:3295498-3295517 Msa0097470:intron 45.0%
! CTTTTCCATTTCCCGAGCAT+CGG + chr1_3:3295754-3295773 Msa0097470:CDS 45.0%
!!! AGGCAACTATTTTGAGACGG+AGG + chr1_3:3296286-3296305 Msa0097470:intron 45.0%
!!! GGCAACTATTTTGAGACGGA+GGG + chr1_3:3296287-3296306 Msa0097470:intron 45.0%
TAGCTGGCCAATAAACAGCA+TGG - chr1_3:3297044-3297063 None:intergenic 45.0%
CAGCTATGCTAATGTCTGCT+GGG + chr1_3:3297058-3297077 Msa0097470:CDS 45.0%
TGGGTTAAGCCTTCCCAAAA+TGG + chr1_3:3297077-3297096 Msa0097470:CDS 45.0%
!! GGCCATATACCATTTTGGGA+AGG - chr1_3:3297089-3297108 None:intergenic 45.0%
CCCAAAATGGTATATGGCCA+TGG + chr1_3:3297090-3297109 Msa0097470:CDS 45.0%
TGGCCATGGATTCTTGACAA+AGG + chr1_3:3297104-3297123 Msa0097470:CDS 45.0%
GAGATGCTGAATCCTGTTCA+TGG + chr1_3:3297222-3297241 Msa0097470:intron 45.0%
CAGTTCACTGAACCATGAAC+AGG - chr1_3:3297237-3297256 None:intergenic 45.0%
! TGAAAGCATGTCAGTCCAAG+TGG - chr1_3:3297855-3297874 None:intergenic 45.0%
TTCAAGCTCTTCTCCTGAAC+TGG + chr1_3:3297976-3297995 Msa0097470:intron 45.0%
TCAAGCTCTTCTCCTGAACT+GGG + chr1_3:3297977-3297996 Msa0097470:intron 45.0%
!! TTCGCTTTAGAACCCAGTTC+AGG - chr1_3:3297992-3298011 None:intergenic 45.0%
GTTTGGATCAGTGCAGTTCA+TGG + chr1_3:3298106-3298125 Msa0097470:intron 45.0%
GATCAGTGCAGTTCATGGTT+CGG + chr1_3:3298111-3298130 Msa0097470:intron 45.0%
ATGAAGATGGGCAAGTCACT+AGG + chr1_3:3298804-3298823 Msa0097470:CDS 45.0%
ATACTTCTTCCTCAGAGAGG+TGG + chr1_3:3298881-3298900 Msa0097470:CDS 45.0%
TTCCTCAGAGAGGTGGAATT+TGG + chr1_3:3298888-3298907 Msa0097470:CDS 45.0%
GAGGTGGAATTTGGCAATGA+TGG + chr1_3:3298897-3298916 Msa0097470:CDS 45.0%
GGTGGAATTTGGCAATGATG+GGG + chr1_3:3298899-3298918 Msa0097470:CDS 45.0%
! CAATGATGGGGACTATTCAG+AGG + chr1_3:3298911-3298930 Msa0097470:CDS 45.0%
ACTGGCAGTGAATTCCACTA+CGG + chr1_3:3299142-3299161 Msa0097470:CDS 45.0%
!! GTTCTGGAGATTGGTAATGC+TGG + chr1_3:3299775-3299794 Msa0097470:CDS 45.0%
CCTTGCTTAAAGAGAGACCA+AGG - chr1_3:3299826-3299845 None:intergenic 45.0%
CCTTGGTCTCTCTTTAAGCA+AGG + chr1_3:3299823-3299842 Msa0097470:CDS 45.0%
TGGTCTCTCTTTAAGCAAGG+AGG + chr1_3:3299826-3299845 Msa0097470:CDS 45.0%
ATGCTCAACTTGGCTATTCC+AGG + chr1_3:3300348-3300367 Msa0097470:CDS 45.0%
TGCTCAACTTGGCTATTCCA+GGG + chr1_3:3300349-3300368 Msa0097470:CDS 45.0%
ACCAATTTGATGCAGCAACC+TGG + chr1_3:3300372-3300391 Msa0097470:CDS 45.0%
CCAATTTGATGCAGCAACCT+GGG + chr1_3:3300373-3300392 Msa0097470:CDS 45.0%
AACCTCAACCAGTCTTTGCT+AGG + chr1_3:3300519-3300538 Msa0097470:CDS 45.0%
! ATCCTAGCAAAGACTGGTTG+AGG - chr1_3:3300524-3300543 None:intergenic 45.0%
!!! TTGCAGGAGCAGTTTTGGAG+TGG - chr1_3:3291804-3291823 Msa0097460:CDS 50.0%
GGCATTACTTGCTTCTTCGG+AGG - chr1_3:3291836-3291855 Msa0097460:CDS 50.0%
CCTATATCATGGCGAGGAGA+TGG - chr1_3:3291934-3291953 Msa0097460:intron 50.0%
CCATCTCCTCGCCATGATAT+AGG + chr1_3:3291931-3291950 Msa0097470:five_prime_UTR 50.0%
! GCGAACGTGACTCAAGTTGT+TGG - chr1_3:3292786-3292805 Msa0097460:CDS 50.0%
ATCAACGATGGCATGGGTAG+TGG + chr1_3:3292908-3292927 Msa0097470:five_prime_UTR 50.0%
!! GGCGTTGACGTAGTAAAGAG+GGG - chr1_3:3293368-3293387 None:intergenic 50.0%
!! GGGCGTTGACGTAGTAAAGA+GGG - chr1_3:3293369-3293388 None:intergenic 50.0%
CTGAAATCGAGCAATGGCGT+CGG - chr1_3:3293428-3293447 None:intergenic 50.0%
!! ATTACCGGCACCGATGAACA+CGG + chr1_3:3293722-3293741 Msa0097470:CDS 50.0%
GAGATTGCAGTGGTCAGTAG+GGG - chr1_3:3293786-3293805 None:intergenic 50.0%
GCCATCTTTCCGTTTACACG+AGG + chr1_3:3294807-3294826 Msa0097470:CDS 50.0%
AGTCATGTCATCTCATGCCG+GGG - chr1_3:3295179-3295198 None:intergenic 50.0%
AGCAGCTTCACCTGTGAGAT+AGG + chr1_3:3295534-3295553 Msa0097470:intron 50.0%
AACGCCTTGTCCCACTAAGT+GGG - chr1_3:3295653-3295672 None:intergenic 50.0%
ATCAACCGATGCTCGGGAAA+TGG - chr1_3:3295762-3295781 None:intergenic 50.0%
!! TTTCCCGAGCATCGGTTGAT+TGG + chr1_3:3295762-3295781 Msa0097470:CDS 50.0%
!! TTCCCGAGCATCGGTTGATT+GGG + chr1_3:3295763-3295782 Msa0097470:CDS 50.0%
! TGAGTCTTGTCACTCGGAAC+AGG - chr1_3:3295794-3295813 None:intergenic 50.0%
TGTGCTCCTCTTACTTTCCC+TGG + chr1_3:3295873-3295892 Msa0097470:intron 50.0%
GAAGAGCCAGGGAAAGTAAG+AGG - chr1_3:3295882-3295901 None:intergenic 50.0%
GGTGCTTGACGGAAATACGT+TGG + chr1_3:3295933-3295952 Msa0097470:intron 50.0%
ATCAGCACTAGCTGATGACC+AGG + chr1_3:3296399-3296418 Msa0097470:CDS 50.0%
CCAATCAAGTGCAGTGTAGC+TGG - chr1_3:3296463-3296482 None:intergenic 50.0%
CCAGCTACACTGCACTTGAT+TGG + chr1_3:3296460-3296479 Msa0097470:CDS 50.0%
CCAGCAGACATTAGCATAGC+TGG - chr1_3:3297060-3297079 None:intergenic 50.0%
CCAGCTATGCTAATGTCTGC+TGG + chr1_3:3297057-3297076 Msa0097470:CDS 50.0%
TATGGTGAGTCGGTGACCAA+TGG - chr1_3:3297955-3297974 None:intergenic 50.0%
ACTGAACTGCGTCACCAGTT+TGG + chr1_3:3298073-3298092 Msa0097470:intron 50.0%
TGCCAAATTCCACCTCTCTG+AGG - chr1_3:3298893-3298912 None:intergenic 50.0%
AATTCCACTACGGCTGCAGA+AGG + chr1_3:3299152-3299171 Msa0097470:CDS 50.0%
ATTTCCTTCTGCAGCCGTAG+TGG - chr1_3:3299159-3299178 None:intergenic 50.0%
TAAGGACAATGTAGCGAGGC+TGG + chr1_3:3299184-3299203 Msa0097470:CDS 50.0%
AGCCTCACAAGCTGATGTCA+GGG - chr1_3:3299755-3299774 None:intergenic 50.0%
ATCAGCTTGTGAGGCTGTTC+TGG + chr1_3:3299759-3299778 Msa0097470:CDS 50.0%
!! TGTGAGGCTGTTCTGGAGAT+TGG + chr1_3:3299766-3299785 Msa0097470:CDS 50.0%
CAACTCAAGCTCGGAGTAAC+AGG - chr1_3:3300320-3300339 None:intergenic 50.0%
CTGTTACTCCGAGCTTGAGT+TGG + chr1_3:3300318-3300337 Msa0097470:CDS 50.0%
TGCTGCATCAAATTGGTCCC+TGG - chr1_3:3300369-3300388 None:intergenic 50.0%
CCCAGGTTGCTGCATCAAAT+TGG - chr1_3:3300376-3300395 None:intergenic 50.0%
TAGAGAGATACCAAGTGGGG+TGG + chr1_3:3300470-3300489 Msa0097470:intron 50.0%
! TACCAAGTGGGGTGGACTTA+AGG + chr1_3:3300478-3300497 Msa0097470:CDS 50.0%
! ACCAAGTGGGGTGGACTTAA+GGG + chr1_3:3300479-3300498 Msa0097470:CDS 50.0%
ACTTAAGGGTGGTCAGGTCA+TGG + chr1_3:3300493-3300512 Msa0097470:CDS 50.0%
GAAGACAAAGGGGTTGCAGT+CGG + chr1_3:3300566-3300585 Msa0097470:CDS 50.0%
!!! GTTTTGGAGTGGATGCCCAG+CGG - chr1_3:3291793-3291812 Msa0097460:CDS 55.0%
!! GGGGCGTTGACGTAGTAAAG+AGG - chr1_3:3293370-3293389 None:intergenic 55.0%
AAGCGCTACCCATATGGGGA+GGG - chr1_3:3293390-3293409 None:intergenic 55.0%
TAAGCGCTACCCATATGGGG+AGG - chr1_3:3293391-3293410 None:intergenic 55.0%
! AAATCGAGCAATGGCGTCGG+CGG - chr1_3:3293425-3293444 None:intergenic 55.0%
CGACGCCATTGCTCGATTTC+AGG + chr1_3:3293426-3293445 Msa0097470:CDS 55.0%
! TGCAACTGCTGCCACTTCTC+AGG + chr1_3:3293754-3293773 Msa0097470:CDS 55.0%
! GCAACTGCTGCCACTTCTCA+GGG + chr1_3:3293755-3293774 Msa0097470:CDS 55.0%
ATTGCAGTGGTCAGTAGGGG+TGG - chr1_3:3293783-3293802 None:intergenic 55.0%
GTCATGTCATCTCATGCCGG+GGG - chr1_3:3295178-3295197 None:intergenic 55.0%
! TGGGGAAGCATGCAAGGGTA+GGG - chr1_3:3295491-3295510 None:intergenic 55.0%
! TTGGGGAAGCATGCAAGGGT+AGG - chr1_3:3295492-3295511 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_3:3295640-3295659 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_3:3295639-3295658 Msa0097470:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_3:3295640-3295659 Msa0097470:intron 55.0%
CTTGTCCCACTAAGTGGGGT+CGG - chr1_3:3295648-3295667 None:intergenic 55.0%
ACGCCTTGTCCCACTAAGTG+GGG - chr1_3:3295652-3295671 None:intergenic 55.0%
CAACGCCTTGTCCCACTAAG+TGG - chr1_3:3295654-3295673 None:intergenic 55.0%
CCTGGATCAAAAGTGGCCTG+CGG + chr1_3:3295729-3295748 Msa0097470:CDS 55.0%
CTGGATCAAAAGTGGCCTGC+GGG + chr1_3:3295730-3295749 Msa0097470:CDS 55.0%
GGGAAATGGAAAAGTCCCGC+AGG - chr1_3:3295748-3295767 None:intergenic 55.0%
!! TCCCGAGCATCGGTTGATTG+GGG + chr1_3:3295764-3295783 Msa0097470:CDS 55.0%
TGCCCCAATCAACCGATGCT+CGG - chr1_3:3295769-3295788 None:intergenic 55.0%
AGTTCACCGCACAACTGCAG+CGG - chr1_3:3297311-3297330 None:intergenic 55.0%
GCAGTTGTGCGGTGAACTGT+TGG + chr1_3:3297313-3297332 Msa0097470:intron 55.0%
GCGGCAGGGGAATTAAACAC+AGG - chr1_3:3299316-3299335 None:intergenic 55.0%
GTGTTTAATTCCCCTGCCGC+CGG + chr1_3:3299316-3299335 Msa0097470:intron 55.0%
ATTGTTTCATCCGGCGGCAG+GGG - chr1_3:3299329-3299348 None:intergenic 55.0%
GATTGTTTCATCCGGCGGCA+GGG - chr1_3:3299330-3299349 None:intergenic 55.0%
AGATTGTTTCATCCGGCGGC+AGG - chr1_3:3299331-3299350 None:intergenic 55.0%
CAACTCTATCTGCGAGAGCC+CGG + chr1_3:3299412-3299431 Msa0097470:intron 55.0%
GGGAGCTGCCTGTAACACAA+AGG + chr1_3:3299672-3299691 Msa0097470:intron 55.0%
CTCCCTGACATCAGCTTGTG+AGG + chr1_3:3299750-3299769 Msa0097470:CDS 55.0%
CAGCCTCACAAGCTGATGTC+AGG - chr1_3:3299756-3299775 None:intergenic 55.0%
!! TGCTTCTGAAGCAGCTGCCA+AGG + chr1_3:3299852-3299871 Msa0097470:CDS 55.0%
ACCCTTAAGTCCACCCCACT+TGG - chr1_3:3300483-3300502 None:intergenic 55.0%
! AAGTGGGGTGGACTTAAGGG+TGG + chr1_3:3300482-3300501 Msa0097470:CDS 55.0%
GTCAACGCCCCTCCCCATAT+GGG + chr1_3:3293379-3293398 Msa0097470:CDS 60.0%
AGCGCTACCCATATGGGGAG+GGG - chr1_3:3293389-3293408 None:intergenic 60.0%
CTCACCGTGTTCATCGGTGC+CGG - chr1_3:3293729-3293748 None:intergenic 60.0%
AGGGGTGGAACCCTGAGAAG+TGG - chr1_3:3293768-3293787 None:intergenic 60.0%
CGACCCCACTTAGTGGGACA+AGG + chr1_3:3295646-3295665 Msa0097470:intron 60.0%
!!! CCGCAGGCCACTTTTGATCC+AGG - chr1_3:3295732-3295751 None:intergenic 60.0%
GCCCCAATCAACCGATGCTC+GGG - chr1_3:3295768-3295787 None:intergenic 60.0%
ACCAAGCCGCTGCAGTTGTG+CGG + chr1_3:3297302-3297321 Msa0097470:intron 60.0%
! AGGGGCACGCTCGTCCATAT+AGG - chr1_3:3299806-3299825 None:intergenic 60.0%
ATATGGACGAGCGTGCCCCT+TGG + chr1_3:3299806-3299825 Msa0097470:CDS 60.0%
! GGGTGGACTTAAGGGTGGTC+AGG + chr1_3:3300487-3300506 Msa0097470:CDS 60.0%
CGTCAACGCCCCTCCCCATA+TGG + chr1_3:3293378-3293397 Msa0097470:CDS 65.0%
ACCGCACAACTGCAGCGGCT+TGG - chr1_3:3297306-3297325 None:intergenic 65.0%
!! AATGGCGTCGGCGGCGATGG+TGG - chr1_3:3293416-3293435 None:intergenic 70.0%
!! AGCAATGGCGTCGGCGGCGA+TGG - chr1_3:3293419-3293438 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3291787 3300877 3291787 ID=Msa0097470;Name=Msa0097470
chr1_3 mRNA 3291787 3300877 3291787 ID=Msa0097470-mRNA-1;Parent=Msa0097470;Name=Msa0097470-mRNA-1;_AED=0.14;_eAED=0.14;_QI=781|1|1|1|0.84|0.71|14|195|601
chr1_3 exon 3291787 3291978 3291787 ID=Msa0097470-mRNA-1:exon:976;Parent=Msa0097470-mRNA-1
chr1_3 exon 3292592 3293447 3292592 ID=Msa0097470-mRNA-1:exon:977;Parent=Msa0097470-mRNA-1
chr1_3 exon 3293695 3293838 3293695 ID=Msa0097470-mRNA-1:exon:978;Parent=Msa0097470-mRNA-1
chr1_3 exon 3294262 3294411 3294262 ID=Msa0097470-mRNA-1:exon:979;Parent=Msa0097470-mRNA-1
chr1_3 exon 3294661 3294828 3294661 ID=Msa0097470-mRNA-1:exon:980;Parent=Msa0097470-mRNA-1
chr1_3 exon 3295722 3295846 3295722 ID=Msa0097470-mRNA-1:exon:981;Parent=Msa0097470-mRNA-1
chr1_3 exon 3296393 3296486 3296393 ID=Msa0097470-mRNA-1:exon:982;Parent=Msa0097470-mRNA-1
chr1_3 exon 3297027 3297125 3297027 ID=Msa0097470-mRNA-1:exon:983;Parent=Msa0097470-mRNA-1
chr1_3 exon 3298798 3298978 3298798 ID=Msa0097470-mRNA-1:exon:984;Parent=Msa0097470-mRNA-1
chr1_3 exon 3299090 3299205 3299090 ID=Msa0097470-mRNA-1:exon:985;Parent=Msa0097470-mRNA-1
chr1_3 exon 3299718 3299873 3299718 ID=Msa0097470-mRNA-1:exon:986;Parent=Msa0097470-mRNA-1
chr1_3 exon 3300266 3300394 3300266 ID=Msa0097470-mRNA-1:exon:987;Parent=Msa0097470-mRNA-1
chr1_3 exon 3300473 3300777 3300473 ID=Msa0097470-mRNA-1:exon:988;Parent=Msa0097470-mRNA-1
chr1_3 exon 3300811 3300877 3300811 ID=Msa0097470-mRNA-1:exon:989;Parent=Msa0097470-mRNA-1
chr1_3 five_prime_UTR 3291787 3291978 3291787 ID=Msa0097470-mRNA-1:five_prime_utr;Parent=Msa0097470-mRNA-1
chr1_3 five_prime_UTR 3292592 3293180 3292592 ID=Msa0097470-mRNA-1:five_prime_utr;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3293181 3293447 3293181 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3293695 3293838 3293695 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3294262 3294411 3294262 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3294661 3294828 3294661 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3295722 3295846 3295722 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3296393 3296486 3296393 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3297027 3297125 3297027 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3298798 3298978 3298798 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3299090 3299205 3299090 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3299718 3299873 3299718 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3300266 3300394 3300266 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 CDS 3300473 3300649 3300473 ID=Msa0097470-mRNA-1:cds;Parent=Msa0097470-mRNA-1
chr1_3 three_prime_UTR 3300650 3300777 3300650 ID=Msa0097470-mRNA-1:three_prime_utr;Parent=Msa0097470-mRNA-1
chr1_3 three_prime_UTR 3300811 3300877 3300811 ID=Msa0097470-mRNA-1:three_prime_utr;Parent=Msa0097470-mRNA-1
Gene Sequence

>Msa0097470

ATGGCAGTGAGAATGAACTGTTCGTTACAGAACACACTCTCCATTCTTTCACTCCGTTCCAATTCCAATGTTTCACACCTCAAATCCAACAAACCCTATTTCCATTTCCCTTCTTCTCCAAGAGCAGCTTTCTTCTGCAAATGCGCCACTTCCTCAAATGATGACAAACCCTATGTCATCACAACCCCTCTTTACTACGTCAACGCCCCTCCCCATATGGGTAGCGCTTATTCCACCATCGCCGCCGACGCCATTGCTCGATTTCAGCGGCTTTTGGGAAAGAAAGTTATATTCATTACCGGCACCGATGAACACGGTGAGAAAATTGCAACTGCTGCCACTTCTCAGGGTTCCACCCCTACTGACCACTGCAATCTCATTTCACAAGCTTACAAGACGCTTTGGAATGATCTAGATATTTCATATGATAAGTTCATTAGAACAACGGATAGCAAGCATGAAGCAGTTGTGAAGGAATTTTATTCGAGAGTGCTTGCCAATGGTGACATTTACCGAGCTGATTATGAGGGAATTTATTGTGTCAGCTGTGAAGAATATAAGGATGAGAAGGAACTGCTTGAAAATAATTGTTGTCCGATCCACCTTAAGCCTTGTGTTTCAAGAAAAGAGGACAATTATTTTTTCGCATTGTCAAAATATCAGAAGTCACTGGAGGAAATTTTGAATAAAAATCCAAATTTTGTGCAGCCATCTTTCCGTTTACACGAGGTTCAAACCTGGATCAAAAGTGGCCTGCGGGACTTTTCCATTTCCCGAGCATCGGTTGATTGGGGCATACCTGTTCCGAGTGACAAGACTCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTACATATCAGCACTAGCTGATGACCAGGAGCAACCTGATTTACTAAACACTGTTTCTTCAAGTTGGCCAGCTACACTGCACTTGATTGGTAAGGATATTCTACGTTTCCATGCTGTTTATTGGCCAGCTATGCTAATGTCTGCTGGGTTAAGCCTTCCCAAAATGGTATATGGCCATGGATTCTTGACAAAGGATGGTATGAAGATGGGCAAGTCACTAGGAAATACGCTTGAACCAAACGATTTGGTTAGTAAGTTTGGGACAGATGCAGTTAGATACTTCTTCCTCAGAGAGGTGGAATTTGGCAATGATGGGGACTATTCAGAGGAACGCTTCATCAATATTGTAAACGCACATCTTGCCAATACAATTGGAAATCTTCTTAATAGGACTCTAGGACTTCTGAAAAAGAACTGCCAATCAACACTGGCAGTGAATTCCACTACGGCTGCAGAAGGAAATGCATTTAAGGACAATGTAGCGAGGCTGGTTGATAAAGCTCATATGCACTATGAAAATCTCTCCCTGACATCAGCTTGTGAGGCTGTTCTGGAGATTGGTAATGCTGGTAATTCCTATATGGACGAGCGTGCCCCTTGGTCTCTCTTTAAGCAAGGAGGTACTGCTTCTGAAGCAGCTGCCAAGGACCTTGTAATTATATTAGAGACAGTGAGAATTATTGCCATTGCACTATCTCCTGTTACTCCGAGCTTGAGTTGGAGAATATATGCTCAACTTGGCTATTCCAGGGACCAATTTGATGCAGCAACCTGGAGAGATACCAAGTGGGGTGGACTTAAGGGTGGTCAGGTCATGGCTCAACCTCAACCAGTCTTTGCTAGGATTGAAAATCAAACTGAAGTGGAAGAAGACAAAGGGGTTGCAGTCGGTAAGAAGACTCTGAAAAGTAAAGGGAAGTCGAAACAAGCTCAAGAAGTTGTTGGAGCTTAG
Protein sequence

>Msa0097470

MAVRMNCSLQNTLSILSLRSNSNVSHLKSNKPYFHFPSSPRAAFFCKCATSSNDDKPYVITTPLYYVNAPPHMGSAYSTIAADAIARFQRLLGKKVIFITGTDEHGEKIATAATSQGSTPTDHCNLISQAYKTLWNDLDISYDKFIRTTDSKHEAVVKEFYSRVLANGDIYRADYEGIYCVSCEEYKDEKELLENNCCPIHLKPCVSRKEDNYFFALSKYQKSLEEILNKNPNFVQPSFRLHEVQTWIKSGLRDFSISRASVDWGIPVPSDKTQTIYVWFDALLGYISALADDQEQPDLLNTVSSSWPATLHLIGKDILRFHAVYWPAMLMSAGLSLPKMVYGHGFLTKDGMKMGKSLGNTLEPNDLVSKFGTDAVRYFFLREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLAVNSTTAAEGNAFKDNVARLVDKAHMHYENLSLTSACEAVLEIGNAGNSYMDERAPWSLFKQGGTASEAAAKDLVIILETVRIIAIALSPVTPSLSWRIYAQLGYSRDQFDAATWRDTKWGGLKGGQVMAQPQPVFARIENQTEVEEDKGVAVGKKTLKSKGKSKQAQEVVGA*