Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178450 | I3S856 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.01e-72 | 220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1178450 | Msa1352540 | 0.803973 | 2.699376e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178450 | MtrunA17_Chr8g0342041 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.95e-76 | 220 |
| Msa1178450 | MtrunA17_Chr8g0387721 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 3.18e-75 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178450 | AT5G55140.1 | 64.762 | 105 | 36 | 1 | 3 | 106 | 1 | 105 | 6.71e-46 | 144 |
Find 60 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTAATGTTTGCTGATA+TGG | 0.157063 | 8_1:+11162965 | Msa1178450:three_prime_UTR |
| TTTCAAGCTGATGCCTAAAT+TGG | 0.237685 | 8_1:-11163117 | None:intergenic |
| TTTATATAGTAAATTATTCT+AGG | 0.238978 | 8_1:-11163158 | None:intergenic |
| AACTCTAGTGAGGGGTATTC+CGG | 0.253922 | 8_1:+11162621 | Msa1178450:CDS |
| ATATAAATGCTTGTTTCTTA+AGG | 0.294228 | 8_1:+11163174 | Msa1178450:three_prime_UTR |
| CACTAGAGTTATATAAAGAT+TGG | 0.372018 | 8_1:-11162608 | None:intergenic |
| TGTATTTGATATAGGTTAAG+AGG | 0.379656 | 8_1:+11162824 | Msa1178450:intron |
| GAAACAACTTATAATCTAGT+TGG | 0.382896 | 8_1:+11163196 | Msa1178450:three_prime_UTR |
| TCAACCTGCTTCTTCTGCTT+AGG | 0.384301 | 8_1:+11162939 | Msa1178450:CDS |
| CAACCTGCTTCTTCTGCTTA+GGG | 0.390606 | 8_1:+11162940 | Msa1178450:CDS |
| CATGAGCATGAATGCGTTCA+AGG | 0.398457 | 8_1:+11162552 | Msa1178450:exon |
| GATGGAACACACCTACTGTT+AGG | 0.400025 | 8_1:+11162713 | Msa1178450:CDS |
| GTTTGAGGCTGTGCCTCATA+TGG | 0.403158 | 8_1:+11163020 | Msa1178450:three_prime_UTR |
| ACTCTAGTGAGGGGTATTCC+GGG | 0.407993 | 8_1:+11162622 | Msa1178450:CDS |
| AGATTGGGGCTATAAGCAAT+TGG | 0.415456 | 8_1:-11162592 | None:intergenic |
| AAACAACTTATAATCTAGTT+GGG | 0.418471 | 8_1:+11163197 | Msa1178450:three_prime_UTR |
| ACTAGAGTTATATAAAGATT+GGG | 0.420712 | 8_1:-11162607 | None:intergenic |
| AGAAAGTTTCTCACTGTTTG+TGG | 0.430411 | 8_1:-11160502 | None:intergenic |
| GATGCAACACTAGCCAATTT+AGG | 0.434034 | 8_1:+11163104 | Msa1178450:three_prime_UTR |
| AAGCAGAAGAAGCAGGTTGA+TGG | 0.435151 | 8_1:-11162936 | None:intergenic |
| TGAGGCACAGCCTCAAACTT+TGG | 0.439856 | 8_1:-11163015 | None:intergenic |
| AGTGCGCCTATGTTGCTTCC+TGG | 0.448328 | 8_1:-11162647 | None:intergenic |
| CAATGCAAATAAACCATATG+AGG | 0.450473 | 8_1:-11163033 | None:intergenic |
| CTATGTTGCTTCCTGGTCCC+CGG | 0.462046 | 8_1:-11162640 | None:intergenic |
| ATGGAACACACCTACTGTTA+GGG | 0.464145 | 8_1:+11162714 | Msa1178450:CDS |
| GTACAAGGCCCGCAAAGAAA+AGG | 0.493013 | 8_1:+11162873 | Msa1178450:CDS |
| GATTGGGGCTATAAGCAATT+GGG | 0.504706 | 8_1:-11162591 | None:intergenic |
| CGGGGACCAGGAAGCAACAT+AGG | 0.508472 | 8_1:+11162641 | Msa1178450:CDS |
| TGTTCCATCGCATGACAGTT+CGG | 0.511917 | 8_1:-11162699 | None:intergenic |
| GAAGCAACATAGGCGCACTT+TGG | 0.520220 | 8_1:+11162651 | Msa1178450:CDS |
| CCATATCAGCAAACATTACA+AGG | 0.526423 | 8_1:-11162965 | None:intergenic |
| TGAGGGGTATTCCGGGGACC+AGG | 0.527749 | 8_1:+11162629 | Msa1178450:CDS |
| CCGAGCTCTTCGTCCTCCGT+TGG | 0.538228 | 8_1:+11162906 | Msa1178450:CDS |
| CGGAGGACGAAGAGCTCGGT+GGG | 0.539550 | 8_1:-11162902 | None:intergenic |
| CTTGAACGCATTCATGCTCA+TGG | 0.548540 | 8_1:-11162551 | None:intergenic |
| GTACCCTAAGCAGAAGAAGC+AGG | 0.555500 | 8_1:-11162943 | None:intergenic |
| GTGCTTTGCTGCACCGTCGA+CGG | 0.564260 | 8_1:-11160434 | None:intergenic |
| GCTAGTTGTTGTTGAGACAG+AGG | 0.564385 | 8_1:+11162846 | Msa1178450:CDS |
| CAGTTCTCTCTCTCCGTCGA+CGG | 0.568181 | 8_1:+11160421 | Msa1178450:five_prime_UTR |
| TGTTAGGGGAATGATCCAGC+AGG | 0.585091 | 8_1:+11162729 | Msa1178450:CDS |
| GCTATAAGCAATTGGGACAC+AGG | 0.590348 | 8_1:-11162584 | None:intergenic |
| GCAAAGCACTCCATTCTAGC+CGG | 0.590680 | 8_1:+11160448 | Msa1178450:five_prime_UTR |
| GGTTGATGGTTTATGACCAA+CGG | 0.595496 | 8_1:-11162922 | None:intergenic |
| TCTTTATATAACTCTAGTGA+GGG | 0.599888 | 8_1:+11162612 | Msa1178450:CDS |
| GCAACCGAACTGTCATGCGA+TGG | 0.602415 | 8_1:+11162695 | Msa1178450:CDS |
| AATATTCTATTTAAAGACAG+AGG | 0.604664 | 8_1:-11163235 | None:intergenic |
| GGTTGAACTCTATACAGTAT+CGG | 0.607947 | 8_1:+11160373 | None:intergenic |
| CTAGAGTTATATAAAGATTG+GGG | 0.610839 | 8_1:-11162606 | None:intergenic |
| ATCTTTATATAACTCTAGTG+AGG | 0.616129 | 8_1:+11162611 | Msa1178450:CDS |
| TGGATCATTCCCCTAACAGT+AGG | 0.620579 | 8_1:-11162724 | None:intergenic |
| AAGTTTCTCACTGTTTGTGG+CGG | 0.625247 | 8_1:-11160499 | None:intergenic |
| CAAGGCCCGCAAAGAAAAGG+AGG | 0.626844 | 8_1:+11162876 | Msa1178450:CDS |
| CCAACGGAGGACGAAGAGCT+CGG | 0.633862 | 8_1:-11162906 | None:intergenic |
| TGAGACAGAGGAGATGTACA+AGG | 0.642473 | 8_1:+11162858 | Msa1178450:CDS |
| TGGAACACACCTACTGTTAG+GGG | 0.654422 | 8_1:+11162715 | Msa1178450:CDS |
| CTCTAGTGAGGGGTATTCCG+GGG | 0.659985 | 8_1:+11162623 | Msa1178450:CDS |
| ACTTTGGAAGCACTACGTCT+CGG | 0.676793 | 8_1:+11162667 | Msa1178450:CDS |
| ACGGAGGACGAAGAGCTCGG+TGG | 0.687356 | 8_1:-11162903 | None:intergenic |
| CTTTATATAACTCTAGTGAG+GGG | 0.705279 | 8_1:+11162613 | Msa1178450:CDS |
| TGATGGTTTATGACCAACGG+AGG | 0.718299 | 8_1:-11162919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTAAAAAAAAAATTGAA+AGG | - | chr8_1:11162411-11162430 | None:intergenic | 10.0% |
| !! | TTTATATAGTAAATTATTCT+AGG | - | chr8_1:11163161-11163180 | None:intergenic | 10.0% |
| !!! | TTAATTTTGTAAATTAGAAC+TGG | - | chr8_1:11160811-11160830 | None:intergenic | 15.0% |
| !!! | TGATATTTGAACTTATTTTT+TGG | - | chr8_1:11161248-11161267 | None:intergenic | 15.0% |
| !!! | TTTAAGATCAAATATATGAA+TGG | - | chr8_1:11161523-11161542 | None:intergenic | 15.0% |
| !! | ATATTTATATACATACTGAA+AGG | - | chr8_1:11162139-11162158 | None:intergenic | 15.0% |
| !! | TTTCAGTATGTATATAAATA+TGG | + | chr8_1:11162138-11162157 | Msa1178450:intron | 15.0% |
| !! | AAATACAACTTCTATATATT+TGG | + | chr8_1:11162467-11162486 | Msa1178450:intron | 15.0% |
| !! | ACATTCATATATGAGTAATT+AGG | - | chr8_1:11160700-11160719 | None:intergenic | 20.0% |
| !! | TACAAATTTGACAAAGAATT+TGG | - | chr8_1:11160870-11160889 | None:intergenic | 20.0% |
| !! | TTGTATCAAAATGTCATTAA+TGG | + | chr8_1:11160885-11160904 | Msa1178450:intron | 20.0% |
| !! | AAACAAGAAAAAGAAAAACT+AGG | + | chr8_1:11160929-11160948 | Msa1178450:intron | 20.0% |
| !! | AAATAAGTTCAAATATCATC+AGG | + | chr8_1:11161250-11161269 | Msa1178450:intron | 20.0% |
| !! | AGGAAAAATAATCAAACAAA+GGG | - | chr8_1:11161321-11161340 | None:intergenic | 20.0% |
| !! | TAGGAAAAATAATCAAACAA+AGG | - | chr8_1:11161322-11161341 | None:intergenic | 20.0% |
| !! | TTATTCTTAGTTCATTACTT+GGG | + | chr8_1:11161921-11161940 | Msa1178450:intron | 20.0% |
| !! | CAATTTATTCTTGAATTAGA+TGG | + | chr8_1:11161953-11161972 | Msa1178450:intron | 20.0% |
| !!! | TTTTTTTTACAATAAGCTGA+TGG | - | chr8_1:11162218-11162237 | None:intergenic | 20.0% |
| !! | ACTAGAGTTATATAAAGATT+GGG | - | chr8_1:11162610-11162629 | None:intergenic | 20.0% |
| !!! | ATATAAATGCTTGTTTCTTA+AGG | + | chr8_1:11163174-11163193 | Msa1178450:three_prime_UTR | 20.0% |
| !! | AAACAACTTATAATCTAGTT+GGG | + | chr8_1:11163197-11163216 | Msa1178450:three_prime_UTR | 20.0% |
| !! | AATATTCTATTTAAAGACAG+AGG | - | chr8_1:11163238-11163257 | None:intergenic | 20.0% |
| !! | ATCACATGAAATAAAAAAGT+TGG | + | chr8_1:11163269-11163288 | Msa1178450:three_prime_UTR | 20.0% |
| ! | ACAAAGAATGCAATTAAAAC+AGG | - | chr8_1:11160741-11160760 | None:intergenic | 25.0% |
| ! | GTCATTAATGGAAAAATGAT+AGG | + | chr8_1:11160897-11160916 | Msa1178450:intron | 25.0% |
| !!! | AACTTATTTTTTGGTAAAGC+AGG | - | chr8_1:11161239-11161258 | None:intergenic | 25.0% |
| ! | TGTAGAAATCTCAATATTGA+GGG | + | chr8_1:11161547-11161566 | Msa1178450:intron | 25.0% |
| ! | CTTATTCTTAGTTCATTACT+TGG | + | chr8_1:11161920-11161939 | Msa1178450:intron | 25.0% |
| !!! | TTTTGTTGTGCTATTATTCT+GGG | + | chr8_1:11162007-11162026 | Msa1178450:intron | 25.0% |
| ! | ATTATTATGAAGCATGAATC+AGG | - | chr8_1:11162114-11162133 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGATTTTGCGTC+TGG | + | chr8_1:11162316-11162335 | Msa1178450:intron | 25.0% |
| ! | AAATTGAAAGGCAATAGATT+GGG | - | chr8_1:11162399-11162418 | None:intergenic | 25.0% |
| ! | AAAATTGAAAGGCAATAGAT+TGG | - | chr8_1:11162400-11162419 | None:intergenic | 25.0% |
| ! | CTAGAGTTATATAAAGATTG+GGG | - | chr8_1:11162609-11162628 | None:intergenic | 25.0% |
| ! | CACTAGAGTTATATAAAGAT+TGG | - | chr8_1:11162611-11162630 | None:intergenic | 25.0% |
| ! | ATCTTTATATAACTCTAGTG+AGG | + | chr8_1:11162611-11162630 | Msa1178450:CDS | 25.0% |
| ! | TCTTTATATAACTCTAGTGA+GGG | + | chr8_1:11162612-11162631 | Msa1178450:CDS | 25.0% |
| ! | GCAAACTTTGTATTTGATAT+AGG | + | chr8_1:11162816-11162835 | Msa1178450:intron | 25.0% |
| ! | TGTATTTGATATAGGTTAAG+AGG | + | chr8_1:11162824-11162843 | Msa1178450:intron | 25.0% |
| ! | GAAACAACTTATAATCTAGT+TGG | + | chr8_1:11163196-11163215 | Msa1178450:three_prime_UTR | 25.0% |
| ! | AGAAAAACTAGGTTTTCGAA+TGG | + | chr8_1:11160940-11160959 | Msa1178450:intron | 30.0% |
| TAATCTCTCGAAATACAGTT+GGG | - | chr8_1:11161191-11161210 | None:intergenic | 30.0% | |
| CTATATGCAAATGGAAAAAG+TGG | - | chr8_1:11161423-11161442 | None:intergenic | 30.0% | |
| GTGTAGAAATCTCAATATTG+AGG | + | chr8_1:11161546-11161565 | Msa1178450:intron | 30.0% | |
| GTAGAAATCTCAATATTGAG+GGG | + | chr8_1:11161548-11161567 | Msa1178450:intron | 30.0% | |
| ! | CATAACAGTTTAAGGTGTTT+CGG | + | chr8_1:11161576-11161595 | Msa1178450:intron | 30.0% |
| ! | TGAAGTGACTTTAGTTTAGT+TGG | + | chr8_1:11161984-11162003 | Msa1178450:intron | 30.0% |
| !! | GTTTTGTTGTGCTATTATTC+TGG | + | chr8_1:11162006-11162025 | Msa1178450:intron | 30.0% |
| !!! | ATTCATCAGCTGTCATTTTT+CGG | + | chr8_1:11162244-11162263 | Msa1178450:intron | 30.0% |
| AAAGCATAGTAGCAACAAAA+TGG | + | chr8_1:11162339-11162358 | Msa1178450:intron | 30.0% | |
| ! | CAAAATGGAGTGGTTTATTT+TGG | + | chr8_1:11162354-11162373 | Msa1178450:intron | 30.0% |
| CTTTATATAACTCTAGTGAG+GGG | + | chr8_1:11162613-11162632 | Msa1178450:CDS | 30.0% | |
| ! | GCAGATATGTCATTTCAAAA+TGG | - | chr8_1:11162777-11162796 | None:intergenic | 30.0% |
| ! | TTTTCAAATGCCAAAGTTTG+AGG | + | chr8_1:11163005-11163024 | Msa1178450:three_prime_UTR | 30.0% |
| CAATGCAAATAAACCATATG+AGG | - | chr8_1:11163036-11163055 | None:intergenic | 30.0% | |
| AGAAAGTTTCTCACTGTTTG+TGG | - | chr8_1:11160505-11160524 | None:intergenic | 35.0% | |
| TTATGGTAGCAAATCGCATT+GGG | - | chr8_1:11160581-11160600 | None:intergenic | 35.0% | |
| ATTATGGTAGCAAATCGCAT+TGG | - | chr8_1:11160582-11160601 | None:intergenic | 35.0% | |
| GTTGACAGCTTAATGCAATT+TGG | - | chr8_1:11160844-11160863 | None:intergenic | 35.0% | |
| TATCATCAACCAACATGTGT+TGG | + | chr8_1:11161063-11161082 | Msa1178450:intron | 35.0% | |
| ! | ATCGAGTTCTTTTAAGCAAG+AGG | + | chr8_1:11161102-11161121 | Msa1178450:intron | 35.0% |
| ! | CCAACAGAATTTGCTCTATT+CGG | - | chr8_1:11161151-11161170 | None:intergenic | 35.0% |
| CTAATCTCTCGAAATACAGT+TGG | - | chr8_1:11161192-11161211 | None:intergenic | 35.0% | |
| TTCCTAATAACCACCCTAAA+TGG | + | chr8_1:11161336-11161355 | Msa1178450:intron | 35.0% | |
| AAGGGAGAAAACTCCATTTA+GGG | - | chr8_1:11161352-11161371 | None:intergenic | 35.0% | |
| TAAGGGAGAAAACTCCATTT+AGG | - | chr8_1:11161353-11161372 | None:intergenic | 35.0% | |
| ACTATGATGTAAGAGGAGTA+TGG | - | chr8_1:11161380-11161399 | None:intergenic | 35.0% | |
| GGTATCTACTATGATGTAAG+AGG | - | chr8_1:11161387-11161406 | None:intergenic | 35.0% | |
| TCCATTTGCATATAGTAACC+AGG | + | chr8_1:11161428-11161447 | Msa1178450:intron | 35.0% | |
| TCCTGGTTACTATATGCAAA+TGG | - | chr8_1:11161432-11161451 | None:intergenic | 35.0% | |
| AGTCATTCAATCAACATTCC+TGG | - | chr8_1:11161449-11161468 | None:intergenic | 35.0% | |
| GGGCATTACATAACAGTTTA+AGG | + | chr8_1:11161568-11161587 | Msa1178450:intron | 35.0% | |
| AGTGAACTGCATAACATAAC+AGG | - | chr8_1:11161614-11161633 | None:intergenic | 35.0% | |
| TGTTATGTTATGCAGTTCAC+TGG | + | chr8_1:11161613-11161632 | Msa1178450:intron | 35.0% | |
| ! | TCTTTTATTGCGTTGTGTGT+AGG | + | chr8_1:11161684-11161703 | Msa1178450:intron | 35.0% |
| ! | AGAAGCTCAAATGTTTTGTC+AGG | + | chr8_1:11161725-11161744 | Msa1178450:intron | 35.0% |
| ! | GAAGCTCAAATGTTTTGTCA+GGG | + | chr8_1:11161726-11161745 | Msa1178450:intron | 35.0% |
| TTGTATGTCTTGTGGTTGTT+AGG | + | chr8_1:11161759-11161778 | Msa1178450:intron | 35.0% | |
| TGTATGTCTTGTGGTTGTTA+GGG | + | chr8_1:11161760-11161779 | Msa1178450:intron | 35.0% | |
| ! | TGAACTAAGAATAAGCATCG+AGG | - | chr8_1:11161915-11161934 | None:intergenic | 35.0% |
| ! | AATATGGTTGAGCGTTTTTC+AGG | + | chr8_1:11162154-11162173 | Msa1178450:intron | 35.0% |
| ATAGTAGCAACAAAATGGAG+TGG | + | chr8_1:11162344-11162363 | Msa1178450:intron | 35.0% | |
| ACTTGAAGTCAAAACAGCAA+TGG | - | chr8_1:11162526-11162545 | None:intergenic | 35.0% | |
| TGCCTGTATACTAACAACAT+CGG | + | chr8_1:11162794-11162813 | Msa1178450:intron | 35.0% | |
| CCATATCAGCAAACATTACA+AGG | - | chr8_1:11162968-11162987 | None:intergenic | 35.0% | |
| ! | CCTTGTAATGTTTGCTGATA+TGG | + | chr8_1:11162965-11162984 | Msa1178450:three_prime_UTR | 35.0% |
| TTTCAAGCTGATGCCTAAAT+TGG | - | chr8_1:11163120-11163139 | None:intergenic | 35.0% | |
| !!! | ACTACTTTTTCCGGCTAGAA+TGG | - | chr8_1:11160461-11160480 | None:intergenic | 40.0% |
| AAGTTTCTCACTGTTTGTGG+CGG | - | chr8_1:11160502-11160521 | None:intergenic | 40.0% | |
| ! | AACTAGGTTTTCGAATGGAG+AGG | + | chr8_1:11160945-11160964 | Msa1178450:intron | 40.0% |
| ATTGTAAATGCTTGCCCAGA+AGG | + | chr8_1:11161026-11161045 | Msa1178450:intron | 40.0% | |
| TTGTAAATGCTTGCCCAGAA+GGG | + | chr8_1:11161027-11161046 | Msa1178450:intron | 40.0% | |
| TTATTTGATCCTCCCCTTCT+GGG | - | chr8_1:11161043-11161062 | None:intergenic | 40.0% | |
| ATTATTTGATCCTCCCCTTC+TGG | - | chr8_1:11161044-11161063 | None:intergenic | 40.0% | |
| CACTTAAGACCAACACATGT+TGG | - | chr8_1:11161075-11161094 | None:intergenic | 40.0% | |
| !! | CAACATGTGTTGGTCTTAAG+TGG | + | chr8_1:11161073-11161092 | Msa1178450:intron | 40.0% |
| !! | ATGTGTTGGTCTTAAGTGGA+AGG | + | chr8_1:11161077-11161096 | Msa1178450:intron | 40.0% |
| !! | TGTGTTGGTCTTAAGTGGAA+GGG | + | chr8_1:11161078-11161097 | Msa1178450:intron | 40.0% |
| ! | TCTTTTAAGCAAGAGGTCCA+AGG | + | chr8_1:11161109-11161128 | Msa1178450:intron | 40.0% |
| CCGAATAGAGCAAATTCTGT+TGG | + | chr8_1:11161148-11161167 | Msa1178450:intron | 40.0% | |
| AGAGCAAATTCTGTTGGAAG+AGG | + | chr8_1:11161154-11161173 | Msa1178450:intron | 40.0% | |
| AAATACAGTTGGGCACAATG+GGG | - | chr8_1:11161181-11161200 | None:intergenic | 40.0% | |
| GAAATACAGTTGGGCACAAT+GGG | - | chr8_1:11161182-11161201 | None:intergenic | 40.0% | |
| TATGTTCTGCACAACTGCAA+AGG | - | chr8_1:11161215-11161234 | None:intergenic | 40.0% | |
| ! | CTCCATTTAGGGTGGTTATT+AGG | - | chr8_1:11161341-11161360 | None:intergenic | 40.0% |
| ! | AAGAGGAGTATGGTGCATAA+GGG | - | chr8_1:11161370-11161389 | None:intergenic | 40.0% |
| ! | TAAGAGGAGTATGGTGCATA+AGG | - | chr8_1:11161371-11161390 | None:intergenic | 40.0% |
| AAAAGTGGAACACGCAATAG+AGG | - | chr8_1:11161408-11161427 | None:intergenic | 40.0% | |
| ! | AGTTTAAGGTGTTTCGGTTC+TGG | + | chr8_1:11161582-11161601 | Msa1178450:intron | 40.0% |
| ACTGGTGCGTTTGTTCTATT+GGG | + | chr8_1:11161631-11161650 | Msa1178450:intron | 40.0% | |
| ! | ATGTTTTGTCAGGGTTTAGC+AGG | + | chr8_1:11161735-11161754 | Msa1178450:intron | 40.0% |
| TAGCAGGATTGTATGTCTTG+TGG | + | chr8_1:11161751-11161770 | Msa1178450:intron | 40.0% | |
| GTATGTCTTGTGGTTGTTAG+GGG | + | chr8_1:11161761-11161780 | Msa1178450:intron | 40.0% | |
| TATGTCTTGTGGTTGTTAGG+GGG | + | chr8_1:11161762-11161781 | Msa1178450:intron | 40.0% | |
| ! | TGTTGTGCTATTATTCTGGG+AGG | + | chr8_1:11162010-11162029 | Msa1178450:intron | 40.0% |
| !!! | GCGTTTTTCAGGAAGTTGTT+AGG | + | chr8_1:11162165-11162184 | Msa1178450:intron | 40.0% |
| GATTGGGGCTATAAGCAATT+GGG | - | chr8_1:11162594-11162613 | None:intergenic | 40.0% | |
| AGATTGGGGCTATAAGCAAT+TGG | - | chr8_1:11162595-11162614 | None:intergenic | 40.0% | |
| ATGGAACACACCTACTGTTA+GGG | + | chr8_1:11162714-11162733 | Msa1178450:CDS | 40.0% | |
| TGCCGATGTTGTTAGTATAC+AGG | - | chr8_1:11162799-11162818 | None:intergenic | 40.0% | |
| !! | GGTTGATGGTTTATGACCAA+CGG | - | chr8_1:11162925-11162944 | None:intergenic | 40.0% |
| GATGCAACACTAGCCAATTT+AGG | + | chr8_1:11163104-11163123 | Msa1178450:three_prime_UTR | 40.0% | |
| !!! | CGACGAGGAACTACTTTTTC+CGG | - | chr8_1:11160470-11160489 | None:intergenic | 45.0% |
| CGGAAAAAGTAGTTCCTCGT+CGG | + | chr8_1:11160468-11160487 | Msa1178450:five_prime_UTR | 45.0% | |
| TGTAAATGCTTGCCCAGAAG+GGG | + | chr8_1:11161028-11161047 | Msa1178450:intron | 45.0% | |
| !! | GTGTTGGTCTTAAGTGGAAG+GGG | + | chr8_1:11161079-11161098 | Msa1178450:intron | 45.0% |
| ! | TTTGCTCTATTCGGAAGCAC+CGG | - | chr8_1:11161142-11161161 | None:intergenic | 45.0% |
| CGAAATACAGTTGGGCACAA+TGG | - | chr8_1:11161183-11161202 | None:intergenic | 45.0% | |
| GGAGAAAACTCCATTTAGGG+TGG | - | chr8_1:11161349-11161368 | None:intergenic | 45.0% | |
| GAATGACTGCACACTTCTCA+TGG | + | chr8_1:11161461-11161480 | Msa1178450:intron | 45.0% | |
| !!! | AGGTGTTTCGGTTCTGGTTT+TGG | + | chr8_1:11161588-11161607 | Msa1178450:intron | 45.0% |
| CACTGGTGCGTTTGTTCTAT+TGG | + | chr8_1:11161630-11161649 | Msa1178450:intron | 45.0% | |
| CTGGTGCGTTTGTTCTATTG+GGG | + | chr8_1:11161632-11161651 | Msa1178450:intron | 45.0% | |
| TGGTGCGTTTGTTCTATTGG+GGG | + | chr8_1:11161633-11161652 | Msa1178450:intron | 45.0% | |
| TTGGGGGAGTTTAAGTAGCT+TGG | + | chr8_1:11161649-11161668 | Msa1178450:intron | 45.0% | |
| TGGGGGAGTTTAAGTAGCTT+GGG | + | chr8_1:11161650-11161669 | Msa1178450:intron | 45.0% | |
| GTTTAAGTAGCTTGGGGTCT+TGG | + | chr8_1:11161657-11161676 | Msa1178450:intron | 45.0% | |
| TTGAAGCCACTGTGACTGAA+TGG | + | chr8_1:11161785-11161804 | Msa1178450:intron | 45.0% | |
| GCAATAGATTGGGTCATGCT+CGG | - | chr8_1:11162389-11162408 | None:intergenic | 45.0% | |
| CTTGAACGCATTCATGCTCA+TGG | - | chr8_1:11162554-11162573 | None:intergenic | 45.0% | |
| CATGAGCATGAATGCGTTCA+AGG | + | chr8_1:11162552-11162571 | Msa1178450:exon | 45.0% | |
| GCTATAAGCAATTGGGACAC+AGG | - | chr8_1:11162587-11162606 | None:intergenic | 45.0% | |
| !! | AACTCTAGTGAGGGGTATTC+CGG | + | chr8_1:11162621-11162640 | Msa1178450:CDS | 45.0% |
| !! | ACTTTGGAAGCACTACGTCT+CGG | + | chr8_1:11162667-11162686 | Msa1178450:CDS | 45.0% |
| TGTTCCATCGCATGACAGTT+CGG | - | chr8_1:11162702-11162721 | None:intergenic | 45.0% | |
| GATGGAACACACCTACTGTT+AGG | + | chr8_1:11162713-11162732 | Msa1178450:CDS | 45.0% | |
| TGGAACACACCTACTGTTAG+GGG | + | chr8_1:11162715-11162734 | Msa1178450:CDS | 45.0% | |
| TGGATCATTCCCCTAACAGT+AGG | - | chr8_1:11162727-11162746 | None:intergenic | 45.0% | |
| AGAGCTATGTTGAAACCTGC+TGG | - | chr8_1:11162747-11162766 | None:intergenic | 45.0% | |
| ! | GCTAGTTGTTGTTGAGACAG+AGG | + | chr8_1:11162846-11162865 | Msa1178450:CDS | 45.0% |
| TGAGACAGAGGAGATGTACA+AGG | + | chr8_1:11162858-11162877 | Msa1178450:CDS | 45.0% | |
| TGATGGTTTATGACCAACGG+AGG | - | chr8_1:11162922-11162941 | None:intergenic | 45.0% | |
| ! | AAGCAGAAGAAGCAGGTTGA+TGG | - | chr8_1:11162939-11162958 | None:intergenic | 45.0% |
| TCAACCTGCTTCTTCTGCTT+AGG | + | chr8_1:11162939-11162958 | Msa1178450:CDS | 45.0% | |
| CAACCTGCTTCTTCTGCTTA+GGG | + | chr8_1:11162940-11162959 | Msa1178450:CDS | 45.0% | |
| ! | GCAAAGCACTCCATTCTAGC+CGG | + | chr8_1:11160448-11160467 | Msa1178450:five_prime_UTR | 50.0% |
| !! | TTGCTCTATTCGGAAGCACC+GGG | - | chr8_1:11161141-11161160 | None:intergenic | 50.0% |
| GGGGGAGTTTAAGTAGCTTG+GGG | + | chr8_1:11161651-11161670 | Msa1178450:intron | 50.0% | |
| AGCACACCATTCAGTCACAG+TGG | - | chr8_1:11161794-11161813 | None:intergenic | 50.0% | |
| CTGAATGGTGTGCTGTATCG+TGG | + | chr8_1:11161800-11161819 | Msa1178450:intron | 50.0% | |
| ! | GTGCTATTATTCTGGGAGGC+AGG | + | chr8_1:11162014-11162033 | Msa1178450:intron | 50.0% |
| !! | ACTCTAGTGAGGGGTATTCC+GGG | + | chr8_1:11162622-11162641 | Msa1178450:CDS | 50.0% |
| GAAGCAACATAGGCGCACTT+TGG | + | chr8_1:11162651-11162670 | Msa1178450:CDS | 50.0% | |
| TGTTAGGGGAATGATCCAGC+AGG | + | chr8_1:11162729-11162748 | Msa1178450:CDS | 50.0% | |
| GTACAAGGCCCGCAAAGAAA+AGG | + | chr8_1:11162873-11162892 | Msa1178450:CDS | 50.0% | |
| ! | GGCTTCCTCCTTTTCTTTGC+GGG | - | chr8_1:11162884-11162903 | None:intergenic | 50.0% |
| ! | GGGCTTCCTCCTTTTCTTTG+CGG | - | chr8_1:11162885-11162904 | None:intergenic | 50.0% |
| GTACCCTAAGCAGAAGAAGC+AGG | - | chr8_1:11162946-11162965 | None:intergenic | 50.0% | |
| TGAGGCACAGCCTCAAACTT+TGG | - | chr8_1:11163018-11163037 | None:intergenic | 50.0% | |
| ! | GTTTGAGGCTGTGCCTCATA+TGG | + | chr8_1:11163020-11163039 | Msa1178450:three_prime_UTR | 50.0% |
| CAGTTCTCTCTCTCCGTCGA+CGG | + | chr8_1:11160421-11160440 | Msa1178450:five_prime_UTR | 55.0% | |
| TCACGCGCGATACAAGAGTG+GGG | - | chr8_1:11160549-11160568 | None:intergenic | 55.0% | |
| CTCACGCGCGATACAAGAGT+GGG | - | chr8_1:11160550-11160569 | None:intergenic | 55.0% | |
| GAGCTGAGCGACGGCTATTA+TGG | - | chr8_1:11160598-11160617 | None:intergenic | 55.0% | |
| ! | CATTTTGCGGAGCTGAGCGA+CGG | - | chr8_1:11160607-11160626 | None:intergenic | 55.0% |
| AAATGCTTGCCCAGAAGGGG+AGG | + | chr8_1:11161031-11161050 | Msa1178450:intron | 55.0% | |
| AGAGGTCCAAGGTTCAACCC+CGG | + | chr8_1:11161120-11161139 | Msa1178450:intron | 55.0% | |
| !! | TGCTCTATTCGGAAGCACCG+GGG | - | chr8_1:11161140-11161159 | None:intergenic | 55.0% |
| GGAGGCAGGTCTGAATCTGT+TGG | + | chr8_1:11162028-11162047 | Msa1178450:intron | 55.0% | |
| !! | CTCTAGTGAGGGGTATTCCG+GGG | + | chr8_1:11162623-11162642 | Msa1178450:CDS | 55.0% |
| ! | CTATGTTGCTTCCTGGTCCC+CGG | - | chr8_1:11162643-11162662 | None:intergenic | 55.0% |
| ! | AGTGCGCCTATGTTGCTTCC+TGG | - | chr8_1:11162650-11162669 | None:intergenic | 55.0% |
| GCAACCGAACTGTCATGCGA+TGG | + | chr8_1:11162695-11162714 | Msa1178450:CDS | 55.0% | |
| CAAGGCCCGCAAAGAAAAGG+AGG | + | chr8_1:11162876-11162895 | Msa1178450:CDS | 55.0% | |
| GTGCTTTGCTGCACCGTCGA+CGG | - | chr8_1:11160437-11160456 | None:intergenic | 60.0% | |
| ! | TGGCGGCTTTTCTTCCGACG+AGG | - | chr8_1:11160485-11160504 | None:intergenic | 60.0% |
| CCTCACGCGCGATACAAGAG+TGG | - | chr8_1:11160551-11160570 | None:intergenic | 60.0% | |
| CCACTCTTGTATCGCGCGTG+AGG | + | chr8_1:11160548-11160567 | Msa1178450:intron | 60.0% | |
| CGTCGCTCAGCTCCGCAAAA+TGG | + | chr8_1:11160605-11160624 | Msa1178450:intron | 60.0% | |
| CGCTCAGCTCCGCAAAATGG+CGG | + | chr8_1:11160608-11160627 | Msa1178450:intron | 60.0% | |
| !! | GAAGCACCGGGGTTGAACCT+TGG | - | chr8_1:11161129-11161148 | None:intergenic | 60.0% |
| CGGGGACCAGGAAGCAACAT+AGG | + | chr8_1:11162641-11162660 | Msa1178450:CDS | 60.0% | |
| CCAACGGAGGACGAAGAGCT+CGG | - | chr8_1:11162909-11162928 | None:intergenic | 60.0% | |
| !! | AACCGCGCGCCGCCATTTTG+CGG | - | chr8_1:11160620-11160639 | None:intergenic | 65.0% |
| !! | TGAGGGGTATTCCGGGGACC+AGG | + | chr8_1:11162629-11162648 | Msa1178450:CDS | 65.0% |
| CGGAGGACGAAGAGCTCGGT+GGG | - | chr8_1:11162905-11162924 | None:intergenic | 65.0% | |
| ACGGAGGACGAAGAGCTCGG+TGG | - | chr8_1:11162906-11162925 | None:intergenic | 65.0% | |
| CCGAGCTCTTCGTCCTCCGT+TGG | + | chr8_1:11162906-11162925 | Msa1178450:CDS | 65.0% | |
| CTCCGCAAAATGGCGGCGCG+CGG | + | chr8_1:11160615-11160634 | Msa1178450:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 11160383 | 11163327 | 11160383 | ID=Msa1178450;Name=Msa1178450 |
| chr8_1 | mRNA | 11160383 | 11163327 | 11160383 | ID=Msa1178450-mRNA-1;Parent=Msa1178450;Name=Msa1178450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|1|1|1|0.5|0.66|3|367|106 |
| chr8_1 | exon | 11160383 | 11160510 | 11160383 | ID=Msa1178450-mRNA-1:exon:3906;Parent=Msa1178450-mRNA-1 |
| chr8_1 | exon | 11162545 | 11162750 | 11162545 | ID=Msa1178450-mRNA-1:exon:3907;Parent=Msa1178450-mRNA-1 |
| chr8_1 | exon | 11162838 | 11163327 | 11162838 | ID=Msa1178450-mRNA-1:exon:3908;Parent=Msa1178450-mRNA-1 |
| chr8_1 | five_prime_UTR | 11160383 | 11160510 | 11160383 | ID=Msa1178450-mRNA-1:five_prime_utr;Parent=Msa1178450-mRNA-1 |
| chr8_1 | five_prime_UTR | 11162545 | 11162552 | 11162545 | ID=Msa1178450-mRNA-1:five_prime_utr;Parent=Msa1178450-mRNA-1 |
| chr8_1 | CDS | 11162553 | 11162750 | 11162553 | ID=Msa1178450-mRNA-1:cds;Parent=Msa1178450-mRNA-1 |
| chr8_1 | CDS | 11162838 | 11162960 | 11162838 | ID=Msa1178450-mRNA-1:cds;Parent=Msa1178450-mRNA-1 |
| chr8_1 | three_prime_UTR | 11162961 | 11163327 | 11162961 | ID=Msa1178450-mRNA-1:three_prime_utr;Parent=Msa1178450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
