Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178760 | AET01723.2 | 47.727 | 88 | 26 | 1 | 2 | 69 | 203 | 290 | 8.95e-13 | 78.2 |
| Msa1178760 | AET01723.2 | 95.789 | 95 | 4 | 0 | 77 | 171 | 6 | 100 | 3.06e-50 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0951400 | Msa1178760 | 0.830545 | 2.765477e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178760 | MtrunA17_Chr8g0343671 | 95.789 | 95 | 4 | 0 | 77 | 171 | 6 | 100 | 2.81e-54 | 185 |
| Msa1178760 | MtrunA17_Chr8g0343671 | 47.727 | 88 | 26 | 1 | 2 | 69 | 203 | 290 | 8.23e-17 | 78.2 |
| Msa1178760 | MtrunA17_Chr8g0343681 | 67.708 | 96 | 11 | 1 | 1 | 76 | 193 | 288 | 7.52e-35 | 128 |
| Msa1178760 | MtrunA17_Chr8g0343681 | 45.631 | 103 | 43 | 4 | 73 | 174 | 3 | 93 | 7.55e-18 | 80.9 |
| Msa1178760 | MtrunA17_Chr8g0343581 | 57.843 | 102 | 41 | 1 | 75 | 174 | 9 | 110 | 3.07e-30 | 116 |
| Msa1178760 | MtrunA17_Chr8g0343631 | 74.242 | 66 | 17 | 0 | 107 | 172 | 13 | 78 | 2.42e-26 | 105 |
| Msa1178760 | MtrunA17_Chr8g0343631 | 48.352 | 91 | 27 | 1 | 2 | 72 | 180 | 270 | 8.95e-18 | 80.9 |
| Msa1178760 | MtrunA17_Chr4g0005351 | 54.098 | 61 | 28 | 0 | 114 | 174 | 77 | 137 | 1.10e-14 | 71.6 |
| Msa1178760 | MtrunA17_Chr4g0005391 | 41.304 | 92 | 34 | 1 | 2 | 73 | 209 | 300 | 6.43e-14 | 69.7 |
| Msa1178760 | MtrunA17_Chr4g0005391 | 62.500 | 48 | 18 | 0 | 127 | 174 | 61 | 108 | 4.09e-12 | 64.3 |
| Msa1178760 | MtrunA17_Chr4g0005291 | 36.667 | 120 | 55 | 2 | 2 | 101 | 219 | 337 | 1.05e-13 | 68.9 |
| Msa1178760 | MtrunA17_Chr4g0005291 | 43.750 | 80 | 40 | 2 | 100 | 174 | 39 | 118 | 9.26e-12 | 63.2 |
| Msa1178760 | MtrunA17_Chr4g0005401 | 57.895 | 57 | 24 | 0 | 118 | 174 | 17 | 73 | 1.49e-13 | 68.6 |
| Msa1178760 | MtrunA17_Chr8g0343611 | 48.101 | 79 | 21 | 1 | 11 | 69 | 4 | 82 | 1.65e-13 | 68.2 |
| Msa1178760 | MtrunA17_Chr3g0102221 | 57.692 | 52 | 21 | 1 | 124 | 174 | 15 | 66 | 4.51e-13 | 64.3 |
| Msa1178760 | MtrunA17_Chr4g0005331 | 57.895 | 57 | 24 | 0 | 118 | 174 | 81 | 137 | 5.17e-13 | 67.0 |
| Msa1178760 | MtrunA17_Chr4g0005331 | 54.286 | 70 | 29 | 2 | 2 | 69 | 228 | 296 | 6.52e-12 | 63.9 |
| Msa1178760 | MtrunA17_Chr4g0005101 | 57.692 | 52 | 22 | 0 | 123 | 174 | 50 | 101 | 2.90e-12 | 64.7 |
| Msa1178760 | MtrunA17_Chr4g0005381 | 52.632 | 57 | 27 | 0 | 118 | 174 | 81 | 137 | 4.77e-12 | 61.2 |
| Msa1178760 | MtrunA17_Chr3g0102281 | 55.769 | 52 | 22 | 1 | 124 | 174 | 15 | 66 | 9.62e-12 | 63.2 |
| Msa1178760 | MtrunA17_Chr2g0330131 | 50.980 | 51 | 25 | 0 | 124 | 174 | 10 | 60 | 1.11e-11 | 60.5 |
| Msa1178760 | MtrunA17_Chr3g0102171 | 55.769 | 52 | 22 | 1 | 124 | 174 | 15 | 66 | 2.20e-11 | 62.4 |
| Msa1178760 | MtrunA17_Chr3g0102251 | 54.717 | 53 | 23 | 1 | 123 | 174 | 14 | 66 | 2.28e-11 | 61.2 |
| Msa1178760 | MtrunA17_Chr3g0102271 | 57.692 | 52 | 21 | 1 | 124 | 174 | 15 | 66 | 2.63e-11 | 62.0 |
| Msa1178760 | MtrunA17_Chr3g0102131 | 55.769 | 52 | 22 | 1 | 124 | 174 | 15 | 66 | 3.30e-11 | 61.6 |
| Msa1178760 | MtrunA17_Chr3g0102121 | 55.769 | 52 | 22 | 1 | 124 | 174 | 15 | 66 | 3.35e-11 | 61.6 |
| Msa1178760 | MtrunA17_Chr4g0005261 | 54.386 | 57 | 25 | 1 | 118 | 174 | 2 | 57 | 7.57e-11 | 60.5 |
| Msa1178760 | MtrunA17_Chr3g0102261 | 53.846 | 52 | 23 | 1 | 124 | 174 | 15 | 66 | 9.80e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAGGTTGTTACTTTA+AGG | 0.133094 | 8_1:-11642560 | Msa1178760:intron |
| ATGTTCGTGCTATTGGAATT+TGG | 0.188689 | 8_1:-11642645 | Msa1178760:CDS |
| TTGCTTATTTCAAAACAAAA+AGG | 0.273502 | 8_1:-11640824 | Msa1178760:CDS |
| TGTTCGTGCTATTGGAATTT+GGG | 0.279510 | 8_1:-11642644 | Msa1178760:CDS |
| TCACAAGATGTTCGTGCTAT+TGG | 0.326169 | 8_1:-11642652 | Msa1178760:CDS |
| CAAACTTCGCATCTTCATAT+TGG | 0.329382 | 8_1:-11640521 | Msa1178760:CDS |
| GGCTAATATAAGAGAAGAAT+GGG | 0.330253 | 8_1:-11642539 | Msa1178760:CDS |
| GTAGAATAGTATTGGTTGTT+TGG | 0.331798 | 8_1:+11640770 | None:intergenic |
| GTTAATTCAAAAGGACTTGA+TGG | 0.341847 | 8_1:-11642721 | Msa1178760:CDS |
| TAGTATTGGTTGTTTGGAAT+TGG | 0.342997 | 8_1:+11640776 | None:intergenic |
| CAATATGAAGATGCGAAGTT+TGG | 0.372413 | 8_1:+11640522 | None:intergenic |
| TAAAAGTGTGTTGAAGAAGT+TGG | 0.383876 | 8_1:-11642758 | Msa1178760:CDS |
| CGCATCTTCATATTGGTGTA+TGG | 0.420922 | 8_1:-11640514 | Msa1178760:CDS |
| GGTGCAGGTGTGGAAGTAGA+AGG | 0.435357 | 8_1:+11640728 | None:intergenic |
| AGGCTAATATAAGAGAAGAA+TGG | 0.456793 | 8_1:-11642540 | Msa1178760:CDS |
| GTGCGTATAGTTAATTCAAA+AGG | 0.485833 | 8_1:-11642730 | Msa1178760:CDS |
| GTTCGTGCTATTGGAATTTG+GGG | 0.503946 | 8_1:-11642643 | Msa1178760:CDS |
| CAGGACATGTAGAATAGTAT+TGG | 0.505354 | 8_1:+11640762 | None:intergenic |
| GCGACAAAGCATCGAGGACA+TGG | 0.525190 | 8_1:+11640642 | None:intergenic |
| GATGTCTTTGTTAGCTTCCG+AGG | 0.562545 | 8_1:-11640692 | Msa1178760:CDS |
| GTAGAAGGAGAAAATATCAC+AGG | 0.588448 | 8_1:+11640743 | None:intergenic |
| AAGCATCGAGGACATGGCTA+AGG | 0.590773 | 8_1:+11640648 | None:intergenic |
| ATCTTCATATTGGTGTATGG+AGG | 0.636503 | 8_1:-11640511 | Msa1178760:CDS |
| GCTAATATAAGAGAAGAATG+GGG | 0.652982 | 8_1:-11642538 | Msa1178760:CDS |
| TTCGTGCTATTGGAATTTGG+GGG | 0.681628 | 8_1:-11642642 | Msa1178760:CDS |
| AATATAAGAGAAGAATGGGG+AGG | 0.690818 | 8_1:-11642535 | Msa1178760:CDS |
| GTTTGCGAATGTCACTACCT+CGG | 0.693331 | 8_1:+11640675 | None:intergenic |
| GCTTTCGCGACAAAGCATCG+AGG | 0.760908 | 8_1:+11640636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTTCAAAAGATTATT+GGG | - | chr8_1:11641955-11641974 | Msa1178760:intron | 15.0% |
| !! | ACAAAATATAAAATGACATT+AGG | + | chr8_1:11642115-11642134 | None:intergenic | 15.0% |
| !!! | TTAAAAGAGTATAAACATTA+TGG | - | chr8_1:11642328-11642347 | Msa1178760:intron | 15.0% |
| !!! | ACTTTTTTCAAAAGATTATT+GGG | - | chr8_1:11641955-11641974 | Msa1178760:intron | 15.0% |
| !! | ACAAAATATAAAATGACATT+AGG | + | chr8_1:11642115-11642134 | None:intergenic | 15.0% |
| !!! | TTAAAAGAGTATAAACATTA+TGG | - | chr8_1:11642328-11642347 | Msa1178760:intron | 15.0% |
| !!! | TGTTTAATGTATGTTTTTGT+TGG | - | chr8_1:11641392-11641411 | Msa1178760:intron | 20.0% |
| !!! | TTGGAATTTCATTAATTTGA+AGG | - | chr8_1:11641541-11641560 | Msa1178760:intron | 20.0% |
| !!! | ATTTTTTCTCTAAAATGATG+GGG | + | chr8_1:11641581-11641600 | None:intergenic | 20.0% |
| !!! | CATTTTTTCTCTAAAATGAT+GGG | + | chr8_1:11641582-11641601 | None:intergenic | 20.0% |
| !! | TGTCATAAGAATATAATCAA+TGG | - | chr8_1:11641685-11641704 | Msa1178760:intron | 20.0% |
| !!! | TGCAACTTTAAAATTTAGAT+TGG | + | chr8_1:11641718-11641737 | None:intergenic | 20.0% |
| !!! | GACTTTTTTCAAAAGATTAT+TGG | - | chr8_1:11641954-11641973 | Msa1178760:intron | 20.0% |
| !!! | AACAAAGATTTTTGTTTTTG+TGG | - | chr8_1:11642383-11642402 | Msa1178760:intron | 20.0% |
| !! | TTGCTTATTTCAAAACAAAA+AGG | - | chr8_1:11642468-11642487 | Msa1178760:intron | 20.0% |
| !! | TGAAAAATCATTCATTTCAT+TGG | - | chr8_1:11642736-11642755 | Msa1178760:CDS | 20.0% |
| !!! | TGTTTAATGTATGTTTTTGT+TGG | - | chr8_1:11641392-11641411 | Msa1178760:intron | 20.0% |
| !!! | TTGGAATTTCATTAATTTGA+AGG | - | chr8_1:11641541-11641560 | Msa1178760:intron | 20.0% |
| !!! | ATTTTTTCTCTAAAATGATG+GGG | + | chr8_1:11641581-11641600 | None:intergenic | 20.0% |
| !!! | CATTTTTTCTCTAAAATGAT+GGG | + | chr8_1:11641582-11641601 | None:intergenic | 20.0% |
| !! | TGTCATAAGAATATAATCAA+TGG | - | chr8_1:11641685-11641704 | Msa1178760:intron | 20.0% |
| !!! | TGCAACTTTAAAATTTAGAT+TGG | + | chr8_1:11641718-11641737 | None:intergenic | 20.0% |
| !!! | GACTTTTTTCAAAAGATTAT+TGG | - | chr8_1:11641954-11641973 | Msa1178760:intron | 20.0% |
| !!! | AACAAAGATTTTTGTTTTTG+TGG | - | chr8_1:11642383-11642402 | Msa1178760:intron | 20.0% |
| !! | TTGCTTATTTCAAAACAAAA+AGG | - | chr8_1:11642468-11642487 | Msa1178760:intron | 20.0% |
| !! | TGAAAAATCATTCATTTCAT+TGG | - | chr8_1:11642736-11642755 | Msa1178760:CDS | 20.0% |
| !!! | ATTTGAAGGTTGTTACTTTA+AGG | - | chr8_1:11640732-11640751 | Msa1178760:CDS | 25.0% |
| !!! | GATCTTTTTTCTACTCTATT+AGG | - | chr8_1:11640805-11640824 | Msa1178760:CDS | 25.0% |
| !!! | ATTAAAGTTTCTAGTTGTTG+TGG | + | chr8_1:11640934-11640953 | None:intergenic | 25.0% |
| ! | CAACAACTAGAAACTTTAAT+TGG | - | chr8_1:11640934-11640953 | Msa1178760:intron | 25.0% |
| !! | ATCATTATCAACAACCATTT+TGG | + | chr8_1:11641025-11641044 | None:intergenic | 25.0% |
| !! | CTTGCATTAACAATTTTCAT+AGG | - | chr8_1:11641222-11641241 | Msa1178760:intron | 25.0% |
| !!! | CCATTTTTTCTCTAAAATGA+TGG | + | chr8_1:11641583-11641602 | None:intergenic | 25.0% |
| !!! | CCATCATTTTAGAGAAAAAA+TGG | - | chr8_1:11641580-11641599 | Msa1178760:intron | 25.0% |
| ! | TAGAAAAACATTCAATTAGC+TGG | + | chr8_1:11642024-11642043 | None:intergenic | 25.0% |
| ! | TTTGTCCTATTACATACAAT+AGG | - | chr8_1:11642130-11642149 | Msa1178760:intron | 25.0% |
| !! | TTGTTGATTGAGTATATATG+TGG | + | chr8_1:11642368-11642387 | None:intergenic | 25.0% |
| ! | AAATAAACTTACGATTCTCA+TGG | + | chr8_1:11642430-11642449 | None:intergenic | 25.0% |
| !! | AAGACATCATATTTTATCTG+AGG | + | chr8_1:11642588-11642607 | None:intergenic | 25.0% |
| !!! | TCCTGTTTTAAGTTTTTTGT+CGG | + | chr8_1:11642697-11642716 | None:intergenic | 25.0% |
| !!! | ATTTGAAGGTTGTTACTTTA+AGG | - | chr8_1:11640732-11640751 | Msa1178760:CDS | 25.0% |
| !!! | GATCTTTTTTCTACTCTATT+AGG | - | chr8_1:11640805-11640824 | Msa1178760:CDS | 25.0% |
| !!! | ATTAAAGTTTCTAGTTGTTG+TGG | + | chr8_1:11640934-11640953 | None:intergenic | 25.0% |
| ! | CAACAACTAGAAACTTTAAT+TGG | - | chr8_1:11640934-11640953 | Msa1178760:intron | 25.0% |
| !! | ATCATTATCAACAACCATTT+TGG | + | chr8_1:11641025-11641044 | None:intergenic | 25.0% |
| !! | CTTGCATTAACAATTTTCAT+AGG | - | chr8_1:11641222-11641241 | Msa1178760:intron | 25.0% |
| !!! | CCATTTTTTCTCTAAAATGA+TGG | + | chr8_1:11641583-11641602 | None:intergenic | 25.0% |
| !!! | CCATCATTTTAGAGAAAAAA+TGG | - | chr8_1:11641580-11641599 | Msa1178760:intron | 25.0% |
| ! | TAGAAAAACATTCAATTAGC+TGG | + | chr8_1:11642024-11642043 | None:intergenic | 25.0% |
| ! | TTTGTCCTATTACATACAAT+AGG | - | chr8_1:11642130-11642149 | Msa1178760:intron | 25.0% |
| !! | TTGTTGATTGAGTATATATG+TGG | + | chr8_1:11642368-11642387 | None:intergenic | 25.0% |
| ! | AAATAAACTTACGATTCTCA+TGG | + | chr8_1:11642430-11642449 | None:intergenic | 25.0% |
| !! | AAGACATCATATTTTATCTG+AGG | + | chr8_1:11642588-11642607 | None:intergenic | 25.0% |
| !!! | TCCTGTTTTAAGTTTTTTGT+CGG | + | chr8_1:11642697-11642716 | None:intergenic | 25.0% |
| ! | TAAAAGTGTGTTGAAGAAGT+TGG | - | chr8_1:11640534-11640553 | Msa1178760:CDS | 30.0% |
| GTGCGTATAGTTAATTCAAA+AGG | - | chr8_1:11640562-11640581 | Msa1178760:CDS | 30.0% | |
| GTTAATTCAAAAGGACTTGA+TGG | - | chr8_1:11640571-11640590 | Msa1178760:CDS | 30.0% | |
| ! | TTGCAGAAGAAGTATATAAG+AGG | - | chr8_1:11640698-11640717 | Msa1178760:CDS | 30.0% |
| ! | AGGCTATGTTCTAAATTTGA+AGG | - | chr8_1:11640718-11640737 | Msa1178760:CDS | 30.0% |
| AGGCTAATATAAGAGAAGAA+TGG | - | chr8_1:11640752-11640771 | Msa1178760:CDS | 30.0% | |
| GGCTAATATAAGAGAAGAAT+GGG | - | chr8_1:11640753-11640772 | Msa1178760:CDS | 30.0% | |
| GCTAATATAAGAGAAGAATG+GGG | - | chr8_1:11640754-11640773 | Msa1178760:CDS | 30.0% | |
| TTGAAATTTGACACACAACA+TGG | - | chr8_1:11640838-11640857 | Msa1178760:CDS | 30.0% | |
| CTTTAATTGGAACACTTGAT+TGG | - | chr8_1:11640947-11640966 | Msa1178760:intron | 30.0% | |
| TAAACAAGTAGTTGCCAAAA+TGG | - | chr8_1:11641008-11641027 | Msa1178760:intron | 30.0% | |
| !!! | AGACATTTTGAGATGCTTAT+TGG | + | chr8_1:11641090-11641109 | None:intergenic | 30.0% |
| ACCATCAATAGAACTTGTAT+GGG | + | chr8_1:11641336-11641355 | None:intergenic | 30.0% | |
| AAATGATCATTGTGATTGCA+AGG | + | chr8_1:11641522-11641541 | None:intergenic | 30.0% | |
| ! | TGCAATCACAATGATCATTT+TGG | - | chr8_1:11641522-11641541 | Msa1178760:intron | 30.0% |
| TGTGAGATCAAACTCAAATT+TGG | - | chr8_1:11641662-11641681 | Msa1178760:intron | 30.0% | |
| GTCATTGCAATGATAATACA+TGG | + | chr8_1:11641937-11641956 | None:intergenic | 30.0% | |
| ! | CTAAGTCTTTGCATTCATTT+TGG | + | chr8_1:11641985-11642004 | None:intergenic | 30.0% |
| TCACACCTATTGTATGTAAT+AGG | + | chr8_1:11642138-11642157 | None:intergenic | 30.0% | |
| GCTTCAAAACTATAATGTGT+TGG | - | chr8_1:11642244-11642263 | Msa1178760:intron | 30.0% | |
| !! | TAGTATTGGTTGTTTGGAAT+TGG | + | chr8_1:11642519-11642538 | None:intergenic | 30.0% |
| !! | GTAGAATAGTATTGGTTGTT+TGG | + | chr8_1:11642525-11642544 | None:intergenic | 30.0% |
| TCCGACAAAAAACTTAAAAC+AGG | - | chr8_1:11642693-11642712 | Msa1178760:CDS | 30.0% | |
| ! | TAAAAGTGTGTTGAAGAAGT+TGG | - | chr8_1:11640534-11640553 | Msa1178760:CDS | 30.0% |
| GTGCGTATAGTTAATTCAAA+AGG | - | chr8_1:11640562-11640581 | Msa1178760:CDS | 30.0% | |
| GTTAATTCAAAAGGACTTGA+TGG | - | chr8_1:11640571-11640590 | Msa1178760:CDS | 30.0% | |
| ! | TTGCAGAAGAAGTATATAAG+AGG | - | chr8_1:11640698-11640717 | Msa1178760:CDS | 30.0% |
| ! | AGGCTATGTTCTAAATTTGA+AGG | - | chr8_1:11640718-11640737 | Msa1178760:CDS | 30.0% |
| AGGCTAATATAAGAGAAGAA+TGG | - | chr8_1:11640752-11640771 | Msa1178760:CDS | 30.0% | |
| GGCTAATATAAGAGAAGAAT+GGG | - | chr8_1:11640753-11640772 | Msa1178760:CDS | 30.0% | |
| GCTAATATAAGAGAAGAATG+GGG | - | chr8_1:11640754-11640773 | Msa1178760:CDS | 30.0% | |
| TTGAAATTTGACACACAACA+TGG | - | chr8_1:11640838-11640857 | Msa1178760:CDS | 30.0% | |
| CTTTAATTGGAACACTTGAT+TGG | - | chr8_1:11640947-11640966 | Msa1178760:intron | 30.0% | |
| TAAACAAGTAGTTGCCAAAA+TGG | - | chr8_1:11641008-11641027 | Msa1178760:intron | 30.0% | |
| !!! | AGACATTTTGAGATGCTTAT+TGG | + | chr8_1:11641090-11641109 | None:intergenic | 30.0% |
| ACCATCAATAGAACTTGTAT+GGG | + | chr8_1:11641336-11641355 | None:intergenic | 30.0% | |
| AAATGATCATTGTGATTGCA+AGG | + | chr8_1:11641522-11641541 | None:intergenic | 30.0% | |
| ! | TGCAATCACAATGATCATTT+TGG | - | chr8_1:11641522-11641541 | Msa1178760:intron | 30.0% |
| TGTGAGATCAAACTCAAATT+TGG | - | chr8_1:11641662-11641681 | Msa1178760:intron | 30.0% | |
| GTCATTGCAATGATAATACA+TGG | + | chr8_1:11641937-11641956 | None:intergenic | 30.0% | |
| ! | CTAAGTCTTTGCATTCATTT+TGG | + | chr8_1:11641985-11642004 | None:intergenic | 30.0% |
| TCACACCTATTGTATGTAAT+AGG | + | chr8_1:11642138-11642157 | None:intergenic | 30.0% | |
| GCTTCAAAACTATAATGTGT+TGG | - | chr8_1:11642244-11642263 | Msa1178760:intron | 30.0% | |
| !! | TAGTATTGGTTGTTTGGAAT+TGG | + | chr8_1:11642519-11642538 | None:intergenic | 30.0% |
| !! | GTAGAATAGTATTGGTTGTT+TGG | + | chr8_1:11642525-11642544 | None:intergenic | 30.0% |
| TCCGACAAAAAACTTAAAAC+AGG | - | chr8_1:11642693-11642712 | Msa1178760:CDS | 30.0% | |
| ! | ATGTTCGTGCTATTGGAATT+TGG | - | chr8_1:11640647-11640666 | Msa1178760:CDS | 35.0% |
| ! | TGTTCGTGCTATTGGAATTT+GGG | - | chr8_1:11640648-11640667 | Msa1178760:CDS | 35.0% |
| AATATAAGAGAAGAATGGGG+AGG | - | chr8_1:11640757-11640776 | Msa1178760:CDS | 35.0% | |
| ! | ATTGGAACACTTGATTGGTT+TGG | - | chr8_1:11640952-11640971 | Msa1178760:intron | 35.0% |
| TATCACTCGACACATTGAAA+TGG | - | chr8_1:11641166-11641185 | Msa1178760:intron | 35.0% | |
| GACCATCAATAGAACTTGTA+TGG | + | chr8_1:11641337-11641356 | None:intergenic | 35.0% | |
| TCAAACAGAAATGCACAACA+AGG | + | chr8_1:11641493-11641512 | None:intergenic | 35.0% | |
| ATGATTCGCTTGGTTGTTTA+AGG | + | chr8_1:11641785-11641804 | None:intergenic | 35.0% | |
| CTTACGATTCTCATGGATTT+AGG | + | chr8_1:11642423-11642442 | None:intergenic | 35.0% | |
| CAGGACATGTAGAATAGTAT+TGG | + | chr8_1:11642533-11642552 | None:intergenic | 35.0% | |
| GTAGAAGGAGAAAATATCAC+AGG | + | chr8_1:11642552-11642571 | None:intergenic | 35.0% | |
| !! | TCATATTTTATCTGAGGTGC+AGG | + | chr8_1:11642582-11642601 | None:intergenic | 35.0% |
| CAATATGAAGATGCGAAGTT+TGG | + | chr8_1:11642773-11642792 | None:intergenic | 35.0% | |
| CAAACTTCGCATCTTCATAT+TGG | - | chr8_1:11642771-11642790 | Msa1178760:CDS | 35.0% | |
| ATCTTCATATTGGTGTATGG+AGG | - | chr8_1:11642781-11642800 | Msa1178760:CDS | 35.0% | |
| ! | ATGTTCGTGCTATTGGAATT+TGG | - | chr8_1:11640647-11640666 | Msa1178760:CDS | 35.0% |
| ! | TGTTCGTGCTATTGGAATTT+GGG | - | chr8_1:11640648-11640667 | Msa1178760:CDS | 35.0% |
| AATATAAGAGAAGAATGGGG+AGG | - | chr8_1:11640757-11640776 | Msa1178760:CDS | 35.0% | |
| ! | ATTGGAACACTTGATTGGTT+TGG | - | chr8_1:11640952-11640971 | Msa1178760:intron | 35.0% |
| TATCACTCGACACATTGAAA+TGG | - | chr8_1:11641166-11641185 | Msa1178760:intron | 35.0% | |
| GACCATCAATAGAACTTGTA+TGG | + | chr8_1:11641337-11641356 | None:intergenic | 35.0% | |
| TCAAACAGAAATGCACAACA+AGG | + | chr8_1:11641493-11641512 | None:intergenic | 35.0% | |
| ATGATTCGCTTGGTTGTTTA+AGG | + | chr8_1:11641785-11641804 | None:intergenic | 35.0% | |
| CTTACGATTCTCATGGATTT+AGG | + | chr8_1:11642423-11642442 | None:intergenic | 35.0% | |
| CAGGACATGTAGAATAGTAT+TGG | + | chr8_1:11642533-11642552 | None:intergenic | 35.0% | |
| GTAGAAGGAGAAAATATCAC+AGG | + | chr8_1:11642552-11642571 | None:intergenic | 35.0% | |
| !! | TCATATTTTATCTGAGGTGC+AGG | + | chr8_1:11642582-11642601 | None:intergenic | 35.0% |
| CAATATGAAGATGCGAAGTT+TGG | + | chr8_1:11642773-11642792 | None:intergenic | 35.0% | |
| CAAACTTCGCATCTTCATAT+TGG | - | chr8_1:11642771-11642790 | Msa1178760:CDS | 35.0% | |
| ATCTTCATATTGGTGTATGG+AGG | - | chr8_1:11642781-11642800 | Msa1178760:CDS | 35.0% | |
| TCACAAGATGTTCGTGCTAT+TGG | - | chr8_1:11640640-11640659 | Msa1178760:CDS | 40.0% | |
| ! | GTTCGTGCTATTGGAATTTG+GGG | - | chr8_1:11640649-11640668 | Msa1178760:CDS | 40.0% |
| ! | TTCGTGCTATTGGAATTTGG+GGG | - | chr8_1:11640650-11640669 | Msa1178760:CDS | 40.0% |
| ATCCTCCTCTCGACAAAATA+GGG | + | chr8_1:11640868-11640887 | None:intergenic | 40.0% | |
| AATCCTCCTCTCGACAAAAT+AGG | + | chr8_1:11640869-11640888 | None:intergenic | 40.0% | |
| !! | ACACTTGATTGGTTTGGAAC+AGG | - | chr8_1:11640958-11640977 | Msa1178760:intron | 40.0% |
| TCTTAAGATCGCTCAACACA+TGG | - | chr8_1:11641107-11641126 | Msa1178760:intron | 40.0% | |
| GCCCATACAAGTTCTATTGA+TGG | - | chr8_1:11641332-11641351 | Msa1178760:intron | 40.0% | |
| ACAATCTTGCGTCTTTCTTC+TGG | + | chr8_1:11641613-11641632 | None:intergenic | 40.0% | |
| GAGTTTGATCTCACAGAAGT+GGG | + | chr8_1:11641657-11641676 | None:intergenic | 40.0% | |
| TGAGTTTGATCTCACAGAAG+TGG | + | chr8_1:11641658-11641677 | None:intergenic | 40.0% | |
| ATCACGACACTGTTAAACCT+CGG | - | chr8_1:11641824-11641843 | Msa1178760:intron | 40.0% | |
| ! | CAATTAGCTGGTGATGAGAA+TGG | + | chr8_1:11642012-11642031 | None:intergenic | 40.0% |
| CGCATCTTCATATTGGTGTA+TGG | - | chr8_1:11642778-11642797 | Msa1178760:CDS | 40.0% | |
| TCACAAGATGTTCGTGCTAT+TGG | - | chr8_1:11640640-11640659 | Msa1178760:CDS | 40.0% | |
| ! | GTTCGTGCTATTGGAATTTG+GGG | - | chr8_1:11640649-11640668 | Msa1178760:CDS | 40.0% |
| ! | TTCGTGCTATTGGAATTTGG+GGG | - | chr8_1:11640650-11640669 | Msa1178760:CDS | 40.0% |
| ATCCTCCTCTCGACAAAATA+GGG | + | chr8_1:11640868-11640887 | None:intergenic | 40.0% | |
| AATCCTCCTCTCGACAAAAT+AGG | + | chr8_1:11640869-11640888 | None:intergenic | 40.0% | |
| !! | ACACTTGATTGGTTTGGAAC+AGG | - | chr8_1:11640958-11640977 | Msa1178760:intron | 40.0% |
| TCTTAAGATCGCTCAACACA+TGG | - | chr8_1:11641107-11641126 | Msa1178760:intron | 40.0% | |
| GCCCATACAAGTTCTATTGA+TGG | - | chr8_1:11641332-11641351 | Msa1178760:intron | 40.0% | |
| ACAATCTTGCGTCTTTCTTC+TGG | + | chr8_1:11641613-11641632 | None:intergenic | 40.0% | |
| GAGTTTGATCTCACAGAAGT+GGG | + | chr8_1:11641657-11641676 | None:intergenic | 40.0% | |
| TGAGTTTGATCTCACAGAAG+TGG | + | chr8_1:11641658-11641677 | None:intergenic | 40.0% | |
| ATCACGACACTGTTAAACCT+CGG | - | chr8_1:11641824-11641843 | Msa1178760:intron | 40.0% | |
| ! | CAATTAGCTGGTGATGAGAA+TGG | + | chr8_1:11642012-11642031 | None:intergenic | 40.0% |
| CGCATCTTCATATTGGTGTA+TGG | - | chr8_1:11642778-11642797 | Msa1178760:CDS | 40.0% | |
| ATTGGAATTTGGGGGATGAG+TGG | - | chr8_1:11640658-11640677 | Msa1178760:CDS | 45.0% | |
| ATTTGGGGGATGAGTGGTAT+AGG | - | chr8_1:11640664-11640683 | Msa1178760:CDS | 45.0% | |
| ! | GATTGCCCTATTTTGTCGAG+AGG | - | chr8_1:11640860-11640879 | Msa1178760:intron | 45.0% |
| GATCGCTCAACACATGGAAA+TGG | - | chr8_1:11641113-11641132 | Msa1178760:intron | 45.0% | |
| CACATGGAAATGGCTCATGA+AGG | - | chr8_1:11641123-11641142 | Msa1178760:intron | 45.0% | |
| CTCTACAACGATGATTCGCT+TGG | + | chr8_1:11641795-11641814 | None:intergenic | 45.0% | |
| ! | TTAGCTGGTGATGAGAATGG+TGG | + | chr8_1:11642009-11642028 | None:intergenic | 45.0% |
| !! | TTTTATCTGAGGTGCAGGTG+TGG | + | chr8_1:11642577-11642596 | None:intergenic | 45.0% |
| ! | GATGTCTTTGTTAGCTTCCG+AGG | - | chr8_1:11642600-11642619 | Msa1178760:intron | 45.0% |
| GTTTGCGAATGTCACTACCT+CGG | + | chr8_1:11642620-11642639 | None:intergenic | 45.0% | |
| ATTGGAATTTGGGGGATGAG+TGG | - | chr8_1:11640658-11640677 | Msa1178760:CDS | 45.0% | |
| ATTTGGGGGATGAGTGGTAT+AGG | - | chr8_1:11640664-11640683 | Msa1178760:CDS | 45.0% | |
| ! | GATTGCCCTATTTTGTCGAG+AGG | - | chr8_1:11640860-11640879 | Msa1178760:intron | 45.0% |
| GATCGCTCAACACATGGAAA+TGG | - | chr8_1:11641113-11641132 | Msa1178760:intron | 45.0% | |
| CACATGGAAATGGCTCATGA+AGG | - | chr8_1:11641123-11641142 | Msa1178760:intron | 45.0% | |
| CTCTACAACGATGATTCGCT+TGG | + | chr8_1:11641795-11641814 | None:intergenic | 45.0% | |
| ! | TTAGCTGGTGATGAGAATGG+TGG | + | chr8_1:11642009-11642028 | None:intergenic | 45.0% |
| !! | TTTTATCTGAGGTGCAGGTG+TGG | + | chr8_1:11642577-11642596 | None:intergenic | 45.0% |
| ! | GATGTCTTTGTTAGCTTCCG+AGG | - | chr8_1:11642600-11642619 | Msa1178760:intron | 45.0% |
| GTTTGCGAATGTCACTACCT+CGG | + | chr8_1:11642620-11642639 | None:intergenic | 45.0% | |
| !! | TTTATAAAATATTATTCATT+TGG | + | chr8_1:11642279-11642298 | None:intergenic | 5.0% |
| !! | TTTATAAAATATTATTCATT+TGG | + | chr8_1:11642279-11642298 | None:intergenic | 5.0% |
| ! | TGCCCTATTTTGTCGAGAGG+AGG | - | chr8_1:11640863-11640882 | Msa1178760:intron | 50.0% |
| GAGGAGGATTCGTCGTATGA+AGG | - | chr8_1:11640879-11640898 | Msa1178760:intron | 50.0% | |
| ATAGCAGTGTGTGAGTGACG+AGG | - | chr8_1:11641752-11641771 | Msa1178760:intron | 50.0% | |
| !! | ATAGCTCTAGCGATGATCCG+AGG | + | chr8_1:11641844-11641863 | None:intergenic | 50.0% |
| !! | AAGCATCGAGGACATGGCTA+AGG | + | chr8_1:11642647-11642666 | None:intergenic | 50.0% |
| ! | TGCCCTATTTTGTCGAGAGG+AGG | - | chr8_1:11640863-11640882 | Msa1178760:intron | 50.0% |
| GAGGAGGATTCGTCGTATGA+AGG | - | chr8_1:11640879-11640898 | Msa1178760:intron | 50.0% | |
| ATAGCAGTGTGTGAGTGACG+AGG | - | chr8_1:11641752-11641771 | Msa1178760:intron | 50.0% | |
| !! | ATAGCTCTAGCGATGATCCG+AGG | + | chr8_1:11641844-11641863 | None:intergenic | 50.0% |
| !! | AAGCATCGAGGACATGGCTA+AGG | + | chr8_1:11642647-11642666 | None:intergenic | 50.0% |
| GGTGCAGGTGTGGAAGTAGA+AGG | + | chr8_1:11642567-11642586 | None:intergenic | 55.0% | |
| !! | GCGACAAAGCATCGAGGACA+TGG | + | chr8_1:11642653-11642672 | None:intergenic | 55.0% |
| !! | GCTTTCGCGACAAAGCATCG+AGG | + | chr8_1:11642659-11642678 | None:intergenic | 55.0% |
| GGTGCAGGTGTGGAAGTAGA+AGG | + | chr8_1:11642567-11642586 | None:intergenic | 55.0% | |
| !! | GCGACAAAGCATCGAGGACA+TGG | + | chr8_1:11642653-11642672 | None:intergenic | 55.0% |
| !! | GCTTTCGCGACAAAGCATCG+AGG | + | chr8_1:11642659-11642678 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 11640505 | 11642809 | 11640505 | ID=Msa1178760;Name=Msa1178760 |
| chr8_1 | mRNA | 11640505 | 11642809 | 11640505 | ID=Msa1178760-mRNA-1;Parent=Msa1178760;Name=Msa1178760-mRNA-1;_AED=0.42;_eAED=0.47;_QI=0|0|0|1|0|0|3|0|198 |
| chr8_1 | exon | 11642635 | 11642809 | 11642635 | ID=Msa1178760-mRNA-1:exon:4148;Parent=Msa1178760-mRNA-1 |
| chr8_1 | exon | 11642523 | 11642574 | 11642523 | ID=Msa1178760-mRNA-1:exon:4147;Parent=Msa1178760-mRNA-1 |
| chr8_1 | exon | 11640505 | 11640871 | 11640505 | ID=Msa1178760-mRNA-1:exon:4146;Parent=Msa1178760-mRNA-1 |
| chr8_1 | CDS | 11642635 | 11642809 | 11642635 | ID=Msa1178760-mRNA-1:cds;Parent=Msa1178760-mRNA-1 |
| chr8_1 | CDS | 11642523 | 11642574 | 11642523 | ID=Msa1178760-mRNA-1:cds;Parent=Msa1178760-mRNA-1 |
| chr8_1 | CDS | 11640505 | 11640871 | 11640505 | ID=Msa1178760-mRNA-1:cds;Parent=Msa1178760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
