Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179730 | XP_039682983.1 | 61.667 | 240 | 60 | 1 | 1 | 208 | 1 | 240 | 4.80e-97 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1179730 | Msa1179750 | 0.828235 | 1.006355e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179730 | MtrunA17_Chr1g0148611 | 54.321 | 162 | 41 | 2 | 48 | 177 | 2 | 162 | 4.35e-53 | 171 |
| Msa1179730 | MtrunA17_Chr8g0363071 | 50.955 | 157 | 45 | 1 | 48 | 172 | 2 | 158 | 1.82e-49 | 161 |
| Msa1179730 | MtrunA17_Chr4g0037231 | 75.000 | 80 | 19 | 1 | 139 | 218 | 18 | 96 | 8.33e-35 | 125 |
| Msa1179730 | MtrunA17_Chr7g0219411 | 64.557 | 79 | 25 | 1 | 1 | 79 | 1 | 76 | 1.19e-32 | 115 |
| Msa1179730 | MtrunA17_Chr1g0167871 | 31.102 | 254 | 135 | 8 | 2 | 222 | 207 | 453 | 6.48e-27 | 110 |
| Msa1179730 | MtrunA17_Chr2g0304851 | 32.743 | 226 | 128 | 8 | 1 | 208 | 5 | 224 | 2.87e-26 | 106 |
| Msa1179730 | MtrunA17_Chr7g0231491 | 31.401 | 207 | 103 | 5 | 2 | 173 | 36 | 238 | 1.39e-24 | 99.8 |
| Msa1179730 | MtrunA17_Chr5g0393531 | 28.283 | 198 | 117 | 3 | 1 | 175 | 1 | 196 | 3.24e-24 | 97.8 |
| Msa1179730 | MtrunA17_Chr7g0223511 | 34.184 | 196 | 104 | 8 | 1 | 180 | 24 | 210 | 4.60e-24 | 97.8 |
| Msa1179730 | MtrunA17_Chr5g0420451 | 31.771 | 192 | 105 | 6 | 6 | 175 | 7 | 194 | 8.86e-24 | 96.7 |
| Msa1179730 | MtrunA17_Chr4g0044661 | 26.383 | 235 | 128 | 7 | 1 | 196 | 7 | 235 | 5.28e-19 | 87.0 |
| Msa1179730 | MtrunA17_Chr8g0347361 | 36.735 | 147 | 81 | 5 | 1 | 142 | 11 | 150 | 2.21e-18 | 81.6 |
| Msa1179730 | MtrunA17_Chr1g0171051 | 28.671 | 143 | 94 | 2 | 1 | 136 | 49 | 190 | 2.77e-18 | 84.0 |
| Msa1179730 | MtrunA17_Chr4g0021711 | 74.468 | 47 | 12 | 0 | 1 | 47 | 1 | 47 | 9.53e-18 | 78.2 |
| Msa1179730 | MtrunA17_Chr6g0481111 | 35.252 | 139 | 83 | 5 | 1 | 136 | 1 | 135 | 1.14e-17 | 78.2 |
| Msa1179730 | MtrunA17_Chr1g0172341 | 36.538 | 104 | 61 | 3 | 1 | 102 | 3 | 103 | 1.37e-14 | 68.9 |
| Msa1179730 | MtrunA17_Chr5g0393801 | 33.333 | 105 | 69 | 1 | 1 | 105 | 1 | 104 | 6.02e-14 | 67.0 |
| Msa1179730 | MtrunA17_Chr1g0206481 | 25.664 | 226 | 128 | 6 | 19 | 207 | 19 | 241 | 6.94e-12 | 64.7 |
| Msa1179730 | MtrunA17_Chr2g0326531 | 96.875 | 32 | 1 | 0 | 239 | 270 | 245 | 276 | 7.73e-12 | 65.5 |
| Msa1179730 | MtrunA17_Chr5g0411141 | 27.317 | 205 | 104 | 7 | 39 | 205 | 43 | 240 | 1.01e-11 | 64.7 |
| Msa1179730 | MtrunA17_Chr2g0278111 | 27.317 | 205 | 104 | 7 | 39 | 205 | 42 | 239 | 1.15e-11 | 64.3 |
| Msa1179730 | MtrunA17_Chr5g0423441 | 26.457 | 223 | 108 | 8 | 39 | 223 | 42 | 246 | 1.54e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 88 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTAAGGTGGCATTTA+TGG | 0.155893 | 8_1:+13323928 | Msa1179730:CDS |
| ATTTCGCTTCAAGCCGTTTA+AGG | 0.161851 | 8_1:+13320753 | Msa1179730:CDS |
| GAACCAAACACCACCTTAAA+AGG | 0.192621 | 8_1:-13320679 | None:intergenic |
| CAACACTTGGAGTTGATTAT+TGG | 0.203802 | 8_1:+13320401 | Msa1179730:CDS |
| CTTATACAAGATTGGGTTTA+GGG | 0.211021 | 8_1:+13320340 | Msa1179730:CDS |
| TTTAAGGTGGTGTTTGGTTC+TGG | 0.255906 | 8_1:+13320682 | Msa1179730:CDS |
| CGAGTAATCAACAGATTATC+AGG | 0.266150 | 8_1:-13323609 | None:intergenic |
| AGTTGATCGATGTCACATTA+TGG | 0.272192 | 8_1:+13321109 | Msa1179730:CDS |
| TCTTGTGCTGTTAATTTCTA+AGG | 0.284222 | 8_1:+13323916 | Msa1179730:CDS |
| GGTTTAGGGTGTTGGATTCA+TGG | 0.308198 | 8_1:+13320354 | Msa1179730:CDS |
| ACTTATACAAGATTGGGTTT+AGG | 0.330717 | 8_1:+13320339 | Msa1179730:CDS |
| AATCTGGACTTATACAAGAT+TGG | 0.349046 | 8_1:+13320332 | Msa1179730:CDS |
| ATCTGGACTTATACAAGATT+GGG | 0.354718 | 8_1:+13320333 | Msa1179730:CDS |
| CCATCCTCAATTTCCTTAAA+CGG | 0.358741 | 8_1:-13320766 | None:intergenic |
| CGCAATGTGACTGTAAAGAT+AGG | 0.387445 | 8_1:+13323630 | Msa1179730:CDS |
| TCACGTCGTAACTCGATATA+AGG | 0.393378 | 8_1:+13320555 | Msa1179730:CDS |
| CAAGATTGGGTTTAGGGTGT+TGG | 0.393664 | 8_1:+13320346 | Msa1179730:CDS |
| CAGCAATCTTCCTCCGTTTG+TGG | 0.394980 | 8_1:+13322772 | Msa1179730:intron |
| CTCACCTGGCCCTAAAAGTC+TGG | 0.404875 | 8_1:-13321376 | None:intergenic |
| ACCTTAAAAGGGTGATCAAC+AGG | 0.407479 | 8_1:-13320667 | None:intergenic |
| GTTGATCGATGTCACATTAT+GGG | 0.408466 | 8_1:+13321110 | Msa1179730:CDS |
| GCCCTAAAAGTCTGGACAAC+CGG | 0.413929 | 8_1:-13321368 | None:intergenic |
| CTTGCTGATCGGAAGGACGC+TGG | 0.418996 | 8_1:+13321162 | Msa1179730:CDS |
| GATAATGATTCGGAACAGTT+TGG | 0.428896 | 8_1:+13322796 | Msa1179730:CDS |
| CTTTATCTGTAGGTCGGTCC+CGG | 0.453346 | 8_1:-13318217 | None:intergenic |
| GCTTATTAACTTGAAGCATC+CGG | 0.453469 | 8_1:+13321349 | Msa1179730:CDS |
| TACCCTTCCGATTTATATTG+TGG | 0.454395 | 8_1:-13318356 | None:intergenic |
| ATTGCAGCCACAATATAAAT+CGG | 0.458023 | 8_1:+13318349 | Msa1179730:five_prime_UTR |
| AGGGGATTTCAGTGTTAGCC+AGG | 0.458361 | 8_1:+13323650 | Msa1179730:CDS |
| AGCCTAATCTGTGCAACAAT+TGG | 0.459659 | 8_1:+13321312 | Msa1179730:CDS |
| AGAAAATAACCCAAAACAAA+GGG | 0.473429 | 8_1:+13318269 | Msa1179730:five_prime_UTR |
| TGAGTTAATATCAGAACAAC+CGG | 0.473793 | 8_1:-13321186 | None:intergenic |
| TTGCTGATCGGAAGGACGCT+GGG | 0.486937 | 8_1:+13321163 | Msa1179730:CDS |
| CGAATCATTATCGCCACAAA+CGG | 0.493944 | 8_1:-13322785 | None:intergenic |
| TTCACCACAAGAACGCTTCG+CGG | 0.495052 | 8_1:-13322830 | None:intergenic |
| CGTTTGTGGCGATAATGATT+CGG | 0.496731 | 8_1:+13322786 | Msa1179730:CDS |
| CAAGCCGTTTAAGGAAATTG+AGG | 0.500118 | 8_1:+13320762 | Msa1179730:CDS |
| TGATCGGAAGGACGCTGGGC+CGG | 0.506049 | 8_1:+13321167 | Msa1179730:CDS |
| TTCTAAGGTGGCATTTATGG+TGG | 0.506342 | 8_1:+13323931 | Msa1179730:CDS |
| AAATTCATGCGGAGGAATGT+AGG | 0.510316 | 8_1:-13320734 | None:intergenic |
| GTAGTAGCAGCAATGAAAGC+CGG | 0.512414 | 8_1:+13318198 | None:intergenic |
| GCAATGTGACTGTAAAGATA+GGG | 0.516134 | 8_1:+13323631 | Msa1179730:CDS |
| GACCAATTGTTGCACAGATT+AGG | 0.516949 | 8_1:-13321314 | None:intergenic |
| TGGAGGTCGTTGATCGAAGA+AGG | 0.517234 | 8_1:+13320589 | Msa1179730:CDS |
| CCTCTCTAATCTTTATCTGT+AGG | 0.518084 | 8_1:-13318227 | None:intergenic |
| CATGCTCAATGCAAGCTTGG+AGG | 0.518738 | 8_1:+13321207 | Msa1179730:CDS |
| TTAGAAATTAACAGCACAAG+AGG | 0.520458 | 8_1:-13323914 | None:intergenic |
| TCACCACAAGAACGCTTCGC+GGG | 0.521125 | 8_1:-13322829 | None:intergenic |
| GGTGTTTGGTTCTGGTACAA+AGG | 0.524763 | 8_1:+13320690 | Msa1179730:CDS |
| TGTGCTGTTAATTTCTAAGG+TGG | 0.532564 | 8_1:+13323919 | Msa1179730:CDS |
| AACCAAACACCACCTTAAAA+GGG | 0.535808 | 8_1:-13320678 | None:intergenic |
| ACTCATGCTCAATGCAAGCT+TGG | 0.536287 | 8_1:+13321204 | Msa1179730:CDS |
| AATCTGTGCAACAATTGGTC+GGG | 0.536810 | 8_1:+13321317 | Msa1179730:CDS |
| GGAATGTCAGTGCTAGCAAT+GGG | 0.538207 | 8_1:+13320375 | Msa1179730:CDS |
| GTTGATTATTGGAGATGCTA+AGG | 0.540041 | 8_1:+13320412 | Msa1179730:CDS |
| TAGTAGCAGCAATGAAAGCC+GGG | 0.540225 | 8_1:+13318199 | None:intergenic |
| TGATGAAATTTCTTGCTGAT+CGG | 0.543228 | 8_1:+13321151 | Msa1179730:CDS |
| TCTAAGGTGGCATTTATGGT+GGG | 0.550524 | 8_1:+13323932 | Msa1179730:CDS |
| CCGTTTAAGGAAATTGAGGA+TGG | 0.554670 | 8_1:+13320766 | Msa1179730:CDS |
| ATCATTATCGCCACAAACGG+AGG | 0.555929 | 8_1:-13322782 | None:intergenic |
| GAAATTTCTTGCTGATCGGA+AGG | 0.559598 | 8_1:+13321155 | Msa1179730:CDS |
| AAGAAAATAACCCAAAACAA+AGG | 0.561188 | 8_1:+13318268 | Msa1179730:five_prime_UTR |
| CAGCCACAATATAAATCGGA+AGG | 0.562056 | 8_1:+13318353 | Msa1179730:five_prime_UTR |
| GAGGAGCTACAATTATATCA+AGG | 0.562225 | 8_1:+13320298 | Msa1179730:CDS |
| TAATCTGTGCAACAATTGGT+CGG | 0.562357 | 8_1:+13321316 | Msa1179730:CDS |
| CAATAATCAACTCCAAGTGT+TGG | 0.562520 | 8_1:-13320400 | None:intergenic |
| TCAGTATTACCTCAAAAGCC+TGG | 0.568232 | 8_1:-13323668 | None:intergenic |
| TGTGTAGGGTTTCGATGTCG+AGG | 0.574025 | 8_1:+13320279 | Msa1179730:intron |
| TAGCAATGGGAACCAACACT+TGG | 0.583664 | 8_1:+13320388 | Msa1179730:CDS |
| TGGAATGTCAGTGCTAGCAA+TGG | 0.585452 | 8_1:+13320374 | Msa1179730:CDS |
| ATTATGGGAAAGTTATTCTG+TGG | 0.586038 | 8_1:+13321125 | Msa1179730:CDS |
| TCTAATCTTTATCTGTAGGT+CGG | 0.586740 | 8_1:-13318223 | None:intergenic |
| ACTCCCGCGAAGCGTTCTTG+TGG | 0.592841 | 8_1:+13322826 | Msa1179730:CDS |
| GTGGTGGTTGTCTTCTCCAA+AGG | 0.600658 | 8_1:+13318385 | Msa1179730:five_prime_UTR |
| AATCGGAAGGGTAAATAGTG+TGG | 0.604146 | 8_1:+13318366 | Msa1179730:five_prime_UTR |
| CAATGTGACTGTAAAGATAG+GGG | 0.612824 | 8_1:+13323632 | Msa1179730:CDS |
| AGATAAAGATTAGAGAGGAG+AGG | 0.625129 | 8_1:+13318232 | Msa1179730:five_prime_UTR |
| CGGAAGGGTAAATAGTGTGG+TGG | 0.625438 | 8_1:+13318369 | Msa1179730:five_prime_UTR |
| TGAGGATGGAAACTTTAAGA+CGG | 0.628748 | 8_1:+13320780 | Msa1179730:CDS |
| ATAAGGAATTTGAGCAGTGG+AGG | 0.630233 | 8_1:+13320572 | Msa1179730:CDS |
| GAAAAGCAGAATATTGTGCA+CGG | 0.631477 | 8_1:+13323576 | Msa1179730:intron |
| GTTCTGGTACAAAGGTGCAA+AGG | 0.634428 | 8_1:+13320698 | Msa1179730:CDS |
| TTGAAGCGAAATTCATGCGG+AGG | 0.640397 | 8_1:-13320742 | None:intergenic |
| CCTACAGATAAAGATTAGAG+AGG | 0.643313 | 8_1:+13318227 | Msa1179730:five_prime_UTR |
| GATATAAGGAATTTGAGCAG+TGG | 0.650236 | 8_1:+13320569 | Msa1179730:CDS |
| AGCCACAATATAAATCGGAA+GGG | 0.665023 | 8_1:+13318354 | Msa1179730:five_prime_UTR |
| GGCTTGAAGCGAAATTCATG+CGG | 0.665995 | 8_1:-13320745 | None:intergenic |
| TAGAGAGGAGAGGACAACAA+AGG | 0.674608 | 8_1:+13318242 | Msa1179730:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTCAAAAAAAAAAAAAAA+AGG | - | chr8_1:13318453-13318472 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAACCTTTTTGA+AGG | - | chr8_1:13318569-13318588 | None:intergenic | 15.0% |
| !!! | TTTTTTTATGGATTATGTTT+TGG | + | chr8_1:13318589-13318608 | Msa1179730:intron | 15.0% |
| !!! | TGTGAATTTGAATTTTTTTT+GGG | + | chr8_1:13318773-13318792 | Msa1179730:intron | 15.0% |
| !! | GAAAATAAACTATCTATTAA+TGG | - | chr8_1:13320468-13320487 | None:intergenic | 15.0% |
| !!! | ATTATTTCTAACAAAAAAGA+AGG | - | chr8_1:13320890-13320909 | None:intergenic | 15.0% |
| !!! | TCTTTTTTGTTAGAAATAAT+TGG | + | chr8_1:13320890-13320909 | Msa1179730:intron | 15.0% |
| !!! | CTTTTTTGTTAGAAATAATT+GGG | + | chr8_1:13320891-13320910 | Msa1179730:intron | 15.0% |
| !! | TTTGATATCTATTTGAAAAT+TGG | + | chr8_1:13321041-13321060 | Msa1179730:intron | 15.0% |
| !! | GTAACACAAATAAAATATAA+TGG | - | chr8_1:13321261-13321280 | None:intergenic | 15.0% |
| !!! | TTTTATTTGTGTTACTTATT+TGG | + | chr8_1:13321266-13321285 | Msa1179730:intron | 15.0% |
| !!! | ATTTGAAATCAAGATAAAAA+AGG | - | chr8_1:13322544-13322563 | None:intergenic | 15.0% |
| !!! | TTTTATCTTGATTTCAAATT+AGG | + | chr8_1:13322545-13322564 | Msa1179730:intron | 15.0% |
| !!! | TTTTATCCTTGTTTATATTT+TGG | + | chr8_1:13322944-13322963 | Msa1179730:intron | 15.0% |
| !! | AAATAATTTGATTGTAATCA+TGG | + | chr8_1:13323528-13323547 | Msa1179730:intron | 15.0% |
| !!! | TTCTATAAATTATGCAATTT+TGG | - | chr8_1:13323893-13323912 | None:intergenic | 15.0% |
| !! | TGTTGTTCTTAAAGTTAAAA+AGG | + | chr8_1:13318701-13318720 | Msa1179730:intron | 20.0% |
| !! | GTTGTTCTTAAAGTTAAAAA+GGG | + | chr8_1:13318702-13318721 | Msa1179730:intron | 20.0% |
| !!! | GTTAATTTTCTGTTTTTTTC+TGG | + | chr8_1:13318724-13318743 | Msa1179730:intron | 20.0% |
| !!! | GTGTGAATTTGAATTTTTTT+TGG | + | chr8_1:13318772-13318791 | Msa1179730:intron | 20.0% |
| !!! | AAATATAGTTTGTTCAGTAT+TGG | + | chr8_1:13319622-13319641 | Msa1179730:intron | 20.0% |
| !!! | TTTAATGCTTTAAAGTATCA+TGG | - | chr8_1:13319711-13319730 | None:intergenic | 20.0% |
| !! | TTAAAAAGAGATTACAACTA+TGG | + | chr8_1:13319726-13319745 | Msa1179730:intron | 20.0% |
| !! | AGATGAATAAATAAAGTAGA+TGG | - | chr8_1:13319779-13319798 | None:intergenic | 20.0% |
| !!! | ATTCATCTTATCAGTTATTT+TGG | + | chr8_1:13319791-13319810 | Msa1179730:intron | 20.0% |
| !!! | TTTCAAAGTTGATTAAAGTT+TGG | + | chr8_1:13320035-13320054 | Msa1179730:intron | 20.0% |
| !! | ATCAAAAATTAGAATTACGA+AGG | - | chr8_1:13320202-13320221 | None:intergenic | 20.0% |
| !!! | ATTGTTGTTTATTTTTGTGT+AGG | + | chr8_1:13320264-13320283 | Msa1179730:intron | 20.0% |
| !!! | TTGTTGTTTATTTTTGTGTA+GGG | + | chr8_1:13320265-13320284 | Msa1179730:intron | 20.0% |
| !!! | GGTATGATTTTATAACTTTT+GGG | + | chr8_1:13320992-13321011 | Msa1179730:intron | 20.0% |
| !!! | ATTTTATAACTTTTGGGTAT+TGG | + | chr8_1:13320998-13321017 | Msa1179730:intron | 20.0% |
| !! | ATATCTATTTGAAAATTGGT+TGG | + | chr8_1:13321045-13321064 | Msa1179730:intron | 20.0% |
| !!! | ATGATATAGCTTATTTTTGT+TGG | + | chr8_1:13321426-13321445 | Msa1179730:intron | 20.0% |
| !! | TAGGATAGTATTGTATTATT+GGG | + | chr8_1:13321457-13321476 | Msa1179730:intron | 20.0% |
| !! | AATTAACAAATCAGATAACA+TGG | - | chr8_1:13321933-13321952 | None:intergenic | 20.0% |
| !! | ATTATTCAATTCAAATCCAT+TGG | + | chr8_1:13322099-13322118 | Msa1179730:intron | 20.0% |
| !!! | CGTTTAATATTCTTTCTTTT+TGG | + | chr8_1:13322129-13322148 | Msa1179730:intron | 20.0% |
| !!! | TTAATATTCTTTCTTTTTGG+TGG | + | chr8_1:13322132-13322151 | Msa1179730:intron | 20.0% |
| !!! | TTAAACATTTTTCATTCAAG+TGG | + | chr8_1:13322364-13322383 | Msa1179730:intron | 20.0% |
| !! | TTCTTGGTATTAAAGTTATT+TGG | + | chr8_1:13322411-13322430 | Msa1179730:intron | 20.0% |
| !!! | CAAATTAGGAATTGATTTTT+TGG | + | chr8_1:13322559-13322578 | Msa1179730:intron | 20.0% |
| !! | TATCTTCCAAAATATAAACA+AGG | - | chr8_1:13322953-13322972 | None:intergenic | 20.0% |
| !! | TTGTTCAAGAAAAGAAAAAA+GGG | - | chr8_1:13323334-13323353 | None:intergenic | 20.0% |
| !!! | ATTTAGCTATTATTTAGAAC+AGG | - | chr8_1:13323357-13323376 | None:intergenic | 20.0% |
| !!! | AAAAACTTCTTATTTGTAGA+TGG | + | chr8_1:13323478-13323497 | Msa1179730:intron | 20.0% |
| !! | TGATTCAAATTGAAAATCAT+TGG | + | chr8_1:13323810-13323829 | Msa1179730:intron | 20.0% |
| ! | AAGAAAATAACCCAAAACAA+AGG | + | chr8_1:13318268-13318287 | Msa1179730:five_prime_UTR | 25.0% |
| ! | AGAAAATAACCCAAAACAAA+GGG | + | chr8_1:13318269-13318288 | Msa1179730:five_prime_UTR | 25.0% |
| ! | GATCAATTTCAAATGATGAT+TGG | + | chr8_1:13318425-13318444 | Msa1179730:intron | 25.0% |
| !!! | ATGGATTATGTTTTGGTTTT+TGG | + | chr8_1:13318596-13318615 | Msa1179730:intron | 25.0% |
| !!! | TTTTGATTGAGTGTAGAAAT+TGG | + | chr8_1:13318652-13318671 | Msa1179730:intron | 25.0% |
| ! | TTTGATTGAGTGTAGAAATT+GGG | + | chr8_1:13318653-13318672 | Msa1179730:intron | 25.0% |
| !!! | TTTTTTCTGGTAATCTGTTT+CGG | + | chr8_1:13318737-13318756 | Msa1179730:intron | 25.0% |
| ! | ACATGAAAACAAAGTTCATT+AGG | - | chr8_1:13318820-13318839 | None:intergenic | 25.0% |
| !!! | TGTTGTAGAATGTTTTTTCA+AGG | + | chr8_1:13318837-13318856 | Msa1179730:intron | 25.0% |
| !! | TTGTTGTTGAGATTTAAGAA+TGG | + | chr8_1:13318895-13318914 | Msa1179730:intron | 25.0% |
| !! | TTGAACATTATCTCAGATTT+TGG | + | chr8_1:13318968-13318987 | Msa1179730:intron | 25.0% |
| ! | GAATGCACAAAAATTGTATA+AGG | + | chr8_1:13319005-13319024 | Msa1179730:intron | 25.0% |
| !! | TAAGAAATGAGTTTTCATCT+TGG | + | chr8_1:13319060-13319079 | Msa1179730:intron | 25.0% |
| !! | TAACATCCTAAATAGCATTT+TGG | - | chr8_1:13319092-13319111 | None:intergenic | 25.0% |
| !!! | CTATGTTACATTGTTTTATG+TGG | + | chr8_1:13319406-13319425 | Msa1179730:intron | 25.0% |
| !!! | TACATTGTTTTATGTGGAAA+CGG | + | chr8_1:13319412-13319431 | Msa1179730:intron | 25.0% |
| !! | TAGTGTATTTAAGGTTTAGT+TGG | + | chr8_1:13319458-13319477 | Msa1179730:intron | 25.0% |
| !! | AAAAACTTCAAAGGACATTT+TGG | + | chr8_1:13319591-13319610 | Msa1179730:intron | 25.0% |
| ! | AATAGCTAATGGAATAACAT+TGG | + | chr8_1:13319749-13319768 | Msa1179730:intron | 25.0% |
| ! | ATAGCTAATGGAATAACATT+GGG | + | chr8_1:13319750-13319769 | Msa1179730:intron | 25.0% |
| ! | CTAAGAACTAATTACAAACA+TGG | - | chr8_1:13319834-13319853 | None:intergenic | 25.0% |
| !! | GTTTGTAATTAGTTCTTAGT+TGG | + | chr8_1:13319835-13319854 | Msa1179730:intron | 25.0% |
| !! | AGGTTTGTTTGAACTATATT+TGG | + | chr8_1:13319878-13319897 | Msa1179730:intron | 25.0% |
| !! | AATAATTGGGATTTTCTTTC+TGG | + | chr8_1:13320119-13320138 | Msa1179730:intron | 25.0% |
| !!! | GATTTTGATGATATTACTTC+CGG | + | chr8_1:13320219-13320238 | Msa1179730:intron | 25.0% |
| ! | CCACAAACAAAACAAAAATA+CGG | - | chr8_1:13320518-13320537 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTGTGGATTT+AGG | + | chr8_1:13320522-13320541 | Msa1179730:intron | 25.0% |
| !!! | TTGTTTTGTTTGTGGATTTA+GGG | + | chr8_1:13320523-13320542 | Msa1179730:intron | 25.0% |
| !! | TTCCTTTTATGAAATTCCTA+AGG | + | chr8_1:13320861-13320880 | Msa1179730:intron | 25.0% |
| ! | ATCCTTAGGAATTTCATAAA+AGG | - | chr8_1:13320866-13320885 | None:intergenic | 25.0% |
| !! | GGGTATGATTTTATAACTTT+TGG | + | chr8_1:13320991-13321010 | Msa1179730:intron | 25.0% |
| ! | GTAGGATAGTATTGTATTAT+TGG | + | chr8_1:13321456-13321475 | Msa1179730:intron | 25.0% |
| ! | AGGATAGTATTGTATTATTG+GGG | + | chr8_1:13321458-13321477 | Msa1179730:intron | 25.0% |
| ! | GGTTAGATTGTTAAAATTGT+TGG | + | chr8_1:13321527-13321546 | Msa1179730:intron | 25.0% |
| ! | TAGATTGTTAAAATTGTTGG+AGG | + | chr8_1:13321530-13321549 | Msa1179730:intron | 25.0% |
| ! | CATCATCAAAAAATTAGTCA+AGG | - | chr8_1:13321661-13321680 | None:intergenic | 25.0% |
| ! | TGATTAAGTGAAAATTTGTG+AGG | + | chr8_1:13321759-13321778 | Msa1179730:intron | 25.0% |
| ! | CTAATTAACCAAACAACATA+AGG | - | chr8_1:13322064-13322083 | None:intergenic | 25.0% |
| !! | TATGTTGTTTGGTTAATTAG+AGG | + | chr8_1:13322064-13322083 | Msa1179730:intron | 25.0% |
| ! | TATTAAACGTCTATAACCAA+TGG | - | chr8_1:13322118-13322137 | None:intergenic | 25.0% |
| ! | TGTGATATCTCGAATAATAA+AGG | + | chr8_1:13322271-13322290 | Msa1179730:intron | 25.0% |
| ! | TATTTATAAGTACAACGAAG+TGG | - | chr8_1:13323154-13323173 | None:intergenic | 25.0% |
| ! | GTTGTTCAAGAAAAGAAAAA+AGG | - | chr8_1:13323335-13323354 | None:intergenic | 25.0% |
| ! | AATTTGATTGTAATCATGGA+TGG | + | chr8_1:13323532-13323551 | Msa1179730:intron | 25.0% |
| !! | ATTTTATGTATGAAACTCGA+AGG | + | chr8_1:13323740-13323759 | Msa1179730:intron | 25.0% |
| !! | ATTTTCAATTTGAATCACAC+AGG | - | chr8_1:13323807-13323826 | None:intergenic | 25.0% |
| TCTAATCTTTATCTGTAGGT+CGG | - | chr8_1:13318226-13318245 | None:intergenic | 30.0% | |
| ATTGCAGCCACAATATAAAT+CGG | + | chr8_1:13318349-13318368 | Msa1179730:five_prime_UTR | 30.0% | |
| ! | CATCATTTGAAATTGATCGA+AGG | - | chr8_1:13318423-13318442 | None:intergenic | 30.0% |
| !! | CAATTGCATGTTTGGAATTT+TGG | + | chr8_1:13318499-13318518 | Msa1179730:intron | 30.0% |
| !! | TTGGTTTTCCAGAATTTGTT+AGG | + | chr8_1:13318518-13318537 | Msa1179730:intron | 30.0% |
| !!! | TGGTTTTCCAGAATTTGTTA+GGG | + | chr8_1:13318519-13318538 | Msa1179730:intron | 30.0% |
| AACAAAACCCTAACAAATTC+TGG | - | chr8_1:13318529-13318548 | None:intergenic | 30.0% | |
| !!! | GAATTTTTTTTGGGTTGTTG+AGG | + | chr8_1:13318782-13318801 | Msa1179730:intron | 30.0% |
| ! | AACATTATCTCAGATTTTGG+TGG | + | chr8_1:13318971-13318990 | Msa1179730:intron | 30.0% |
| !!! | CCTAAATAGCATTTTGGTTA+TGG | - | chr8_1:13319086-13319105 | None:intergenic | 30.0% |
| ! | CCATAACCAAAATGCTATTT+AGG | + | chr8_1:13319083-13319102 | Msa1179730:intron | 30.0% |
| AACTTTACTTCATATGACTG+TGG | + | chr8_1:13319154-13319173 | Msa1179730:intron | 30.0% | |
| TAGGAAGCTTAGTGTATTTA+AGG | + | chr8_1:13319449-13319468 | Msa1179730:intron | 30.0% | |
| AGTAGATAGTTAGGAAACAA+CGG | - | chr8_1:13319558-13319577 | None:intergenic | 30.0% | |
| TCCTAACTATCTACTTTGAT+TGG | + | chr8_1:13319563-13319582 | Msa1179730:intron | 30.0% | |
| TACAACTATGGAATAGCTAA+TGG | + | chr8_1:13319738-13319757 | Msa1179730:intron | 30.0% | |
| CTAATTACAAACATGGACAA+AGG | - | chr8_1:13319827-13319846 | None:intergenic | 30.0% | |
| ! | GTTCAAACAAACCTTTGAAA+GGG | - | chr8_1:13319872-13319891 | None:intergenic | 30.0% |
| AGTTCAAACAAACCTTTGAA+AGG | - | chr8_1:13319873-13319892 | None:intergenic | 30.0% | |
| TGAAAACACTATCTCAATCA+TGG | + | chr8_1:13319906-13319925 | Msa1179730:intron | 30.0% | |
| ! | TAGAAGAGTGTAAATGAATG+TGG | + | chr8_1:13319932-13319951 | Msa1179730:intron | 30.0% |
| !! | AATTTGTCGTTGTTAGTCTT+TGG | + | chr8_1:13319967-13319986 | Msa1179730:intron | 30.0% |
| TTCCGATTCTTTCGAATAAT+TGG | + | chr8_1:13320105-13320124 | Msa1179730:intron | 30.0% | |
| TCCGATTCTTTCGAATAATT+GGG | + | chr8_1:13320106-13320125 | Msa1179730:intron | 30.0% | |
| TCCCAATTATTCGAAAGAAT+CGG | - | chr8_1:13320110-13320129 | None:intergenic | 30.0% | |
| AATCTGGACTTATACAAGAT+TGG | + | chr8_1:13320332-13320351 | Msa1179730:CDS | 30.0% | |
| ATCTGGACTTATACAAGATT+GGG | + | chr8_1:13320333-13320352 | Msa1179730:CDS | 30.0% | |
| ACTTATACAAGATTGGGTTT+AGG | + | chr8_1:13320339-13320358 | Msa1179730:CDS | 30.0% | |
| CTTATACAAGATTGGGTTTA+GGG | + | chr8_1:13320340-13320359 | Msa1179730:CDS | 30.0% | |
| TTTCGTCGATATTATGCATT+TGG | + | chr8_1:13320484-13320503 | Msa1179730:intron | 30.0% | |
| !!! | CCGTATTTTTGTTTTGTTTG+TGG | + | chr8_1:13320515-13320534 | Msa1179730:intron | 30.0% |
| !! | TTTAAGACGGATGTTTTGTA+TGG | + | chr8_1:13320793-13320812 | Msa1179730:intron | 30.0% |
| ! | GCAAAAAAGTGTAAACAGTA+AGG | - | chr8_1:13320832-13320851 | None:intergenic | 30.0% |
| AAAACAACGACAATTTGAAG+TGG | + | chr8_1:13320932-13320951 | Msa1179730:intron | 30.0% | |
| !! | GTATTGGTTGAAAGATCTTT+CGG | + | chr8_1:13321014-13321033 | Msa1179730:intron | 30.0% |
| ! | AAATTTGTTTGACTATGCAG+CGG | + | chr8_1:13321084-13321103 | Msa1179730:intron | 30.0% |
| ATTATGGGAAAGTTATTCTG+TGG | + | chr8_1:13321125-13321144 | Msa1179730:CDS | 30.0% | |
| TGATGAAATTTCTTGCTGAT+CGG | + | chr8_1:13321151-13321170 | Msa1179730:CDS | 30.0% | |
| TGAGTTAATATCAGAACAAC+CGG | - | chr8_1:13321189-13321208 | None:intergenic | 30.0% | |
| !!! | TAGCTTATTTTTGTTGGATG+TGG | + | chr8_1:13321432-13321451 | Msa1179730:intron | 30.0% |
| ! | TATTGGGGAGTTTGATATTT+TGG | + | chr8_1:13321473-13321492 | Msa1179730:intron | 30.0% |
| !!! | GAGTTTGATATTTTGGTTGT+AGG | + | chr8_1:13321480-13321499 | Msa1179730:intron | 30.0% |
| !!! | ATCTGTAGCATTTTAGTTTG+AGG | + | chr8_1:13321577-13321596 | Msa1179730:intron | 30.0% |
| !!! | TCTGTAGCATTTTAGTTTGA+GGG | + | chr8_1:13321578-13321597 | Msa1179730:intron | 30.0% |
| !!! | TAAAGCCTAGCATTTTTTAG+AGG | + | chr8_1:13321694-13321713 | Msa1179730:intron | 30.0% |
| !!! | AAAGCCTAGCATTTTTTAGA+GGG | + | chr8_1:13321695-13321714 | Msa1179730:intron | 30.0% |
| AATATGTCTTAACCTTTACC+TGG | + | chr8_1:13321787-13321806 | Msa1179730:intron | 30.0% | |
| TGCACTGTTAACTAACTAAT+TGG | + | chr8_1:13321820-13321839 | Msa1179730:intron | 30.0% | |
| ! | CTGATTTTCAGTTTAGCAAA+TGG | + | chr8_1:13321880-13321899 | Msa1179730:intron | 30.0% |
| TCATACTTCCTTATGTTGTT+TGG | + | chr8_1:13322053-13322072 | Msa1179730:intron | 30.0% | |
| !! | TATTCTTTCTTTTTGGTGGT+AGG | + | chr8_1:13322136-13322155 | Msa1179730:intron | 30.0% |
| TGCACATTGAATGAATGAAT+TGG | - | chr8_1:13322189-13322208 | None:intergenic | 30.0% | |
| AATTGCATGAGGAATAATAG+TGG | + | chr8_1:13322315-13322334 | Msa1179730:intron | 30.0% | |
| ! | AAGAAAATGTCACTTCAATG+AGG | - | chr8_1:13322396-13322415 | None:intergenic | 30.0% |
| ! | TCATTGAAGTGACATTTTCT+TGG | + | chr8_1:13322395-13322414 | Msa1179730:intron | 30.0% |
| GCTAGATGTTATATTTGCAT+AGG | + | chr8_1:13322437-13322456 | Msa1179730:intron | 30.0% | |
| ! | CTTTTGTTAGAATTCTCCTT+TGG | + | chr8_1:13322481-13322500 | Msa1179730:intron | 30.0% |
| AACGTAAATAATGCACAATG+AGG | + | chr8_1:13322582-13322601 | Msa1179730:intron | 30.0% | |
| ACGTAAATAATGCACAATGA+GGG | + | chr8_1:13322583-13322602 | Msa1179730:intron | 30.0% | |
| AATAACTTCGCATGATACAA+TGG | - | chr8_1:13322978-13322997 | None:intergenic | 30.0% | |
| ATGCGAAGTTATTTGATCTA+TGG | + | chr8_1:13322985-13323004 | Msa1179730:intron | 30.0% | |
| !!! | TAGTTTTATCCTTCGCATAA+TGG | + | chr8_1:13323015-13323034 | Msa1179730:intron | 30.0% |
| AATACTTGGTTAAGGGAAAT+GGG | + | chr8_1:13323249-13323268 | Msa1179730:intron | 30.0% | |
| ATTTAGCAACCAATTTCTTG+AGG | - | chr8_1:13323280-13323299 | None:intergenic | 30.0% | |
| ! | GAAAGTTACAGTATTGAAGT+CGG | + | chr8_1:13323762-13323781 | Msa1179730:intron | 30.0% |
| ! | AAAGTTACAGTATTGAAGTC+GGG | + | chr8_1:13323763-13323782 | Msa1179730:intron | 30.0% |
| ATTTGAATCACACAGGAAAA+AGG | - | chr8_1:13323800-13323819 | None:intergenic | 30.0% | |
| ! | TCATTGGCTGAAAGATATAA+AGG | + | chr8_1:13323826-13323845 | Msa1179730:intron | 30.0% |
| TTAGAAATTAACAGCACAAG+AGG | - | chr8_1:13323917-13323936 | None:intergenic | 30.0% | |
| ! | TCTTGTGCTGTTAATTTCTA+AGG | + | chr8_1:13323916-13323935 | Msa1179730:CDS | 30.0% |
| !! | AATTTCTAAGGTGGCATTTA+TGG | + | chr8_1:13323928-13323947 | Msa1179730:CDS | 30.0% |
| CCTCTCTAATCTTTATCTGT+AGG | - | chr8_1:13318230-13318249 | None:intergenic | 35.0% | |
| CCTACAGATAAAGATTAGAG+AGG | + | chr8_1:13318227-13318246 | Msa1179730:five_prime_UTR | 35.0% | |
| AGATAAAGATTAGAGAGGAG+AGG | + | chr8_1:13318232-13318251 | Msa1179730:five_prime_UTR | 35.0% | |
| !!! | ACTGATTTGAGTTGTTTTCG+TGG | - | chr8_1:13318296-13318315 | None:intergenic | 35.0% |
| AGCCACAATATAAATCGGAA+GGG | + | chr8_1:13318354-13318373 | Msa1179730:five_prime_UTR | 35.0% | |
| TACCCTTCCGATTTATATTG+TGG | - | chr8_1:13318359-13318378 | None:intergenic | 35.0% | |
| AAGGTAGAAGAGATTACCTT+TGG | - | chr8_1:13318404-13318423 | None:intergenic | 35.0% | |
| ATGCATGTCAATTGCATGTT+TGG | + | chr8_1:13318491-13318510 | Msa1179730:intron | 35.0% | |
| !! | ATCTCAGATTTTGGTGGTTT+TGG | + | chr8_1:13318977-13318996 | Msa1179730:intron | 35.0% |
| AGGCTTGAATATGAGTTTCT+TGG | + | chr8_1:13319025-13319044 | Msa1179730:intron | 35.0% | |
| GGCTTGAATATGAGTTTCTT+GGG | + | chr8_1:13319026-13319045 | Msa1179730:intron | 35.0% | |
| GCTTGAATATGAGTTTCTTG+GGG | + | chr8_1:13319027-13319046 | Msa1179730:intron | 35.0% | |
| ! | TCCAAACTGACTCTACAATT+CGG | - | chr8_1:13319128-13319147 | None:intergenic | 35.0% |
| ! | GAATTTTGCAGCATATGAAC+AGG | + | chr8_1:13319282-13319301 | Msa1179730:intron | 35.0% |
| ! | TTTTATGTGGAAACGGAAAC+AGG | + | chr8_1:13319419-13319438 | Msa1179730:intron | 35.0% |
| AAACAACGGTGATGAATGAT+TGG | - | chr8_1:13319544-13319563 | None:intergenic | 35.0% | |
| GCCAATCAAAGTAGATAGTT+AGG | - | chr8_1:13319567-13319586 | None:intergenic | 35.0% | |
| ! | TTGGCGTTGAAAAACTTCAA+AGG | + | chr8_1:13319582-13319601 | Msa1179730:intron | 35.0% |
| ! | TAAAGTATCATGGTGAGACA+GGG | - | chr8_1:13319701-13319720 | None:intergenic | 35.0% |
| ! | TTAAAGTATCATGGTGAGAC+AGG | - | chr8_1:13319702-13319721 | None:intergenic | 35.0% |
| ! | TTAGTTCTTAGTTGGTGTCT+TGG | + | chr8_1:13319843-13319862 | Msa1179730:intron | 35.0% |
| TTAGAATTACGAAGGTTCGA+AGG | - | chr8_1:13320194-13320213 | None:intergenic | 35.0% | |
| GAGGAGCTACAATTATATCA+AGG | + | chr8_1:13320298-13320317 | Msa1179730:CDS | 35.0% | |
| CAAGGATCTGAAGAAAAATC+TGG | + | chr8_1:13320316-13320335 | Msa1179730:CDS | 35.0% | |
| CAATAATCAACTCCAAGTGT+TGG | - | chr8_1:13320403-13320422 | None:intergenic | 35.0% | |
| ! | CAACACTTGGAGTTGATTAT+TGG | + | chr8_1:13320401-13320420 | Msa1179730:CDS | 35.0% |
| GTTGATTATTGGAGATGCTA+AGG | + | chr8_1:13320412-13320431 | Msa1179730:CDS | 35.0% | |
| GATATAAGGAATTTGAGCAG+TGG | + | chr8_1:13320569-13320588 | Msa1179730:CDS | 35.0% | |
| AACCAAACACCACCTTAAAA+GGG | - | chr8_1:13320681-13320700 | None:intergenic | 35.0% | |
| CCATCCTCAATTTCCTTAAA+CGG | - | chr8_1:13320769-13320788 | None:intergenic | 35.0% | |
| ! | TGAGGATGGAAACTTTAAGA+CGG | + | chr8_1:13320780-13320799 | Msa1179730:CDS | 35.0% |
| !! | ACAAAAAAGAAGGCATCCTT+AGG | - | chr8_1:13320880-13320899 | None:intergenic | 35.0% |
| TAACATTGTGCTGAAAGATG+AGG | + | chr8_1:13320970-13320989 | Msa1179730:intron | 35.0% | |
| AACATTGTGCTGAAAGATGA+GGG | + | chr8_1:13320971-13320990 | Msa1179730:intron | 35.0% | |
| AGTTGATCGATGTCACATTA+TGG | + | chr8_1:13321109-13321128 | Msa1179730:CDS | 35.0% | |
| GTTGATCGATGTCACATTAT+GGG | + | chr8_1:13321110-13321129 | Msa1179730:CDS | 35.0% | |
| ! | GGTCTTTGTTGTGTAGAAAA+TGG | + | chr8_1:13321287-13321306 | Msa1179730:intron | 35.0% |
| TAATCTGTGCAACAATTGGT+CGG | + | chr8_1:13321316-13321335 | Msa1179730:CDS | 35.0% | |
| ! | GCTTATTAACTTGAAGCATC+CGG | + | chr8_1:13321349-13321368 | Msa1179730:CDS | 35.0% |
| !!! | TTGTTTTAGGCTGCAATTGA+TGG | + | chr8_1:13321400-13321419 | Msa1179730:intron | 35.0% |
| ! | ATTTTTGTTGGATGTGGTGT+AGG | + | chr8_1:13321438-13321457 | Msa1179730:intron | 35.0% |
| ! | TGCAATGGTAGTGAATAAGT+AGG | + | chr8_1:13321506-13321525 | Msa1179730:intron | 35.0% |
| ! | TCAACCCTCTAAAAAATGCT+AGG | - | chr8_1:13321702-13321721 | None:intergenic | 35.0% |
| ATATTGAGATGCTTAGTAGC+AGG | + | chr8_1:13321721-13321740 | Msa1179730:intron | 35.0% | |
| TTCACTTAATCAGTAAGCGT+TGG | - | chr8_1:13321751-13321770 | None:intergenic | 35.0% | |
| CACAAATAGATTCCAGGTAA+AGG | - | chr8_1:13321802-13321821 | None:intergenic | 35.0% | |
| GTTAATTCAACACTGAGCTA+TGG | + | chr8_1:13321946-13321965 | Msa1179730:intron | 35.0% | |
| AATGTGCAGAAGATGAATGT+TGG | + | chr8_1:13322201-13322220 | Msa1179730:intron | 35.0% | |
| AAAAAAAATTGACGTACCGC+AGG | - | chr8_1:13322235-13322254 | None:intergenic | 35.0% | |
| TCGTATAAGGAAATTGCATG+AGG | + | chr8_1:13322304-13322323 | Msa1179730:intron | 35.0% | |
| TTGCATAGGCTTCTAAATTG+CGG | + | chr8_1:13322451-13322470 | Msa1179730:intron | 35.0% | |
| ATTCTCCTTTGGTTGTGTTT+AGG | + | chr8_1:13322492-13322511 | Msa1179730:intron | 35.0% | |
| TGTATCCTAAACACAACCAA+AGG | - | chr8_1:13322500-13322519 | None:intergenic | 35.0% | |
| ! | GTTTAGGATACAAGTTTGCT+AGG | + | chr8_1:13322508-13322527 | Msa1179730:intron | 35.0% |
| ! | GATAATGATTCGGAACAGTT+TGG | + | chr8_1:13322796-13322815 | Msa1179730:CDS | 35.0% |
| CGTTCTTGTGGTGAAAAATA+TGG | + | chr8_1:13322838-13322857 | Msa1179730:CDS | 35.0% | |
| ATGGTGAGAATACTTGGTTA+AGG | + | chr8_1:13323241-13323260 | Msa1179730:intron | 35.0% | |
| TGGTGAGAATACTTGGTTAA+GGG | + | chr8_1:13323242-13323261 | Msa1179730:intron | 35.0% | |
| GAATACTTGGTTAAGGGAAA+TGG | + | chr8_1:13323248-13323267 | Msa1179730:intron | 35.0% | |
| TTGATTGTAATCATGGATGG+TGG | + | chr8_1:13323535-13323554 | Msa1179730:intron | 35.0% | |
| GAAAAGCAGAATATTGTGCA+CGG | + | chr8_1:13323576-13323595 | Msa1179730:intron | 35.0% | |
| CGAGTAATCAACAGATTATC+AGG | - | chr8_1:13323612-13323631 | None:intergenic | 35.0% | |
| GCAATGTGACTGTAAAGATA+GGG | + | chr8_1:13323631-13323650 | Msa1179730:CDS | 35.0% | |
| CAATGTGACTGTAAAGATAG+GGG | + | chr8_1:13323632-13323651 | Msa1179730:CDS | 35.0% | |
| ! | AAGTTACAGTATTGAAGTCG+GGG | + | chr8_1:13323764-13323783 | Msa1179730:intron | 35.0% |
| CACAGGAAAAAGGTAAATGT+GGG | - | chr8_1:13323790-13323809 | None:intergenic | 35.0% | |
| ACACAGGAAAAAGGTAAATG+TGG | - | chr8_1:13323791-13323810 | None:intergenic | 35.0% | |
| ! | TGTGCTGTTAATTTCTAAGG+TGG | + | chr8_1:13323919-13323938 | Msa1179730:CDS | 35.0% |
| ! | ACTCTCTAATTTTCCCATCA+TGG | + | chr8_1:13323958-13323977 | Msa1179730:CDS | 35.0% |
| ! | CTCTCTAATTTTCCCATCAT+GGG | + | chr8_1:13323959-13323978 | Msa1179730:CDS | 35.0% |
| ! | ATTAGAGCTTTTCCCATGAT+GGG | - | chr8_1:13323974-13323993 | None:intergenic | 35.0% |
| ! | AATTAGAGCTTTTCCCATGA+TGG | - | chr8_1:13323975-13323994 | None:intergenic | 35.0% |
| !!! | TTTCGTGGTCCCTTTGTTTT+GGG | - | chr8_1:13318281-13318300 | None:intergenic | 40.0% |
| !! | TTTTCGTGGTCCCTTTGTTT+TGG | - | chr8_1:13318282-13318301 | None:intergenic | 40.0% |
| CAGCCACAATATAAATCGGA+AGG | + | chr8_1:13318353-13318372 | Msa1179730:five_prime_UTR | 40.0% | |
| AATCGGAAGGGTAAATAGTG+TGG | + | chr8_1:13318366-13318385 | Msa1179730:five_prime_UTR | 40.0% | |
| TGCAATTGACATGCATGACA+CGG | - | chr8_1:13318487-13318506 | None:intergenic | 40.0% | |
| TTGCTTGCATGCCTTCAAAA+AGG | + | chr8_1:13318555-13318574 | Msa1179730:intron | 40.0% | |
| ATATGAGTTTCTTGGGGCTT+TGG | + | chr8_1:13319033-13319052 | Msa1179730:intron | 40.0% | |
| ! | AACTGACTCTACAATTCGGT+TGG | - | chr8_1:13319124-13319143 | None:intergenic | 40.0% |
| ACCGAATTGTAGAGTCAGTT+TGG | + | chr8_1:13319124-13319143 | Msa1179730:intron | 40.0% | |
| CATATGCTGCAAAATTCTGC+AGG | - | chr8_1:13319279-13319298 | None:intergenic | 40.0% | |
| GTCCTAGTTGCATTTGGATT+CGG | - | chr8_1:13319658-13319677 | None:intergenic | 40.0% | |
| TCAGTAGTCCTAGTTGCATT+TGG | - | chr8_1:13319664-13319683 | None:intergenic | 40.0% | |
| ! | AAAGTATCATGGTGAGACAG+GGG | - | chr8_1:13319700-13319719 | None:intergenic | 40.0% |
| TGTCTTGGTATCCCTTTCAA+AGG | + | chr8_1:13319858-13319877 | Msa1179730:intron | 40.0% | |
| AACGACAAATTCAAGCTCAG+CGG | - | chr8_1:13319958-13319977 | None:intergenic | 40.0% | |
| TTGGAATTCTCTCAGACGTT+CGG | + | chr8_1:13319986-13320005 | Msa1179730:intron | 40.0% | |
| GGTAGTCTATTTATCCTGAC+TGG | + | chr8_1:13320007-13320026 | Msa1179730:intron | 40.0% | |
| ! | ACTTTGAAAGTTCACCAGTC+AGG | - | chr8_1:13320024-13320043 | None:intergenic | 40.0% |
| !! | TTTCTTTCTGGCTGAGTCTT+TGG | + | chr8_1:13320131-13320150 | Msa1179730:intron | 40.0% |
| TTACCAACAGTGCAAACTAC+CGG | - | chr8_1:13320241-13320260 | None:intergenic | 40.0% | |
| TCACGTCGTAACTCGATATA+AGG | + | chr8_1:13320555-13320574 | Msa1179730:CDS | 40.0% | |
| ATAAGGAATTTGAGCAGTGG+AGG | + | chr8_1:13320572-13320591 | Msa1179730:CDS | 40.0% | |
| ACCTTAAAAGGGTGATCAAC+AGG | - | chr8_1:13320670-13320689 | None:intergenic | 40.0% | |
| !! | TGTTGATCACCCTTTTAAGG+TGG | + | chr8_1:13320669-13320688 | Msa1179730:CDS | 40.0% |
| GAACCAAACACCACCTTAAA+AGG | - | chr8_1:13320682-13320701 | None:intergenic | 40.0% | |
| ! | TTTAAGGTGGTGTTTGGTTC+TGG | + | chr8_1:13320682-13320701 | Msa1179730:CDS | 40.0% |
| AAATTCATGCGGAGGAATGT+AGG | - | chr8_1:13320737-13320756 | None:intergenic | 40.0% | |
| ATTTCGCTTCAAGCCGTTTA+AGG | + | chr8_1:13320753-13320772 | Msa1179730:CDS | 40.0% | |
| CAAGCCGTTTAAGGAAATTG+AGG | + | chr8_1:13320762-13320781 | Msa1179730:CDS | 40.0% | |
| CCGTTTAAGGAAATTGAGGA+TGG | + | chr8_1:13320766-13320785 | Msa1179730:CDS | 40.0% | |
| TTCAGCACAATGTTAGTGCA+CGG | - | chr8_1:13320965-13320984 | None:intergenic | 40.0% | |
| TTGGTTGAAAGATCTTTCGG+TGG | + | chr8_1:13321017-13321036 | Msa1179730:intron | 40.0% | |
| TGGTTGAAAGATCTTTCGGT+GGG | + | chr8_1:13321018-13321037 | Msa1179730:intron | 40.0% | |
| GAAATTTCTTGCTGATCGGA+AGG | + | chr8_1:13321155-13321174 | Msa1179730:CDS | 40.0% | |
| !!! | GCTTGGAGGTTGATATTTTG+TGG | + | chr8_1:13321221-13321240 | Msa1179730:intron | 40.0% |
| AGCCTAATCTGTGCAACAAT+TGG | + | chr8_1:13321312-13321331 | Msa1179730:CDS | 40.0% | |
| GACCAATTGTTGCACAGATT+AGG | - | chr8_1:13321317-13321336 | None:intergenic | 40.0% | |
| AATCTGTGCAACAATTGGTC+GGG | + | chr8_1:13321317-13321336 | Msa1179730:CDS | 40.0% | |
| TTTGGTTGTAGGCTTTGCAA+TGG | + | chr8_1:13321491-13321510 | Msa1179730:intron | 40.0% | |
| ACAGTGCACAAATAGATTCC+AGG | - | chr8_1:13321808-13321827 | None:intergenic | 40.0% | |
| ! | TTGGTGGTAGGTTTCAAACT+CGG | + | chr8_1:13322148-13322167 | Msa1179730:intron | 40.0% |
| AGGAATGCATCTGTCGTATA+AGG | + | chr8_1:13322291-13322310 | Msa1179730:intron | 40.0% | |
| CATGAGGAATAATAGTGGTG+CGG | + | chr8_1:13322320-13322339 | Msa1179730:intron | 40.0% | |
| GAATAATAGTGGTGCGGAAA+TGG | + | chr8_1:13322326-13322345 | Msa1179730:intron | 40.0% | |
| TAATGCACAATGAGGGTCAT+TGG | + | chr8_1:13322590-13322609 | Msa1179730:intron | 40.0% | |
| ! | AGATTGCTGTTGCAATGAGA+AGG | - | chr8_1:13322761-13322780 | None:intergenic | 40.0% |
| CGAATCATTATCGCCACAAA+CGG | - | chr8_1:13322788-13322807 | None:intergenic | 40.0% | |
| CGTTTGTGGCGATAATGATT+CGG | + | chr8_1:13322786-13322805 | Msa1179730:CDS | 40.0% | |
| TGTGGTGAAAAATATGGTGC+TGG | + | chr8_1:13322844-13322863 | Msa1179730:CDS | 40.0% | |
| ! | ACAGTTTTCTTCCACCAAGT+TGG | + | chr8_1:13322894-13322913 | Msa1179730:intron | 40.0% |
| !! | CTTAATTTGCTTGGCCAACT+TGG | - | chr8_1:13322911-13322930 | None:intergenic | 40.0% |
| AGTTGGCCAAGCAAATTAAG+AGG | + | chr8_1:13322911-13322930 | Msa1179730:intron | 40.0% | |
| GTTGGCCAAGCAAATTAAGA+GGG | + | chr8_1:13322912-13322931 | Msa1179730:intron | 40.0% | |
| !! | TCACTCCCTCTTAATTTGCT+TGG | - | chr8_1:13322920-13322939 | None:intergenic | 40.0% |
| GCAAATTAAGAGGGAGTGAT+CGG | + | chr8_1:13322921-13322940 | Msa1179730:intron | 40.0% | |
| ! | ATCCTTCGCATAATGGCTTT+TGG | + | chr8_1:13323022-13323041 | Msa1179730:intron | 40.0% |
| AACCAAAAGCCATTATGCGA+AGG | - | chr8_1:13323027-13323046 | None:intergenic | 40.0% | |
| ! | GTATTGGCATGACTAACAGA+TGG | + | chr8_1:13323217-13323236 | Msa1179730:intron | 40.0% |
| GATGGTATGGTGAGAATACT+TGG | + | chr8_1:13323235-13323254 | Msa1179730:intron | 40.0% | |
| TGGGTGAAACCTCAAGAAAT+TGG | + | chr8_1:13323268-13323287 | Msa1179730:intron | 40.0% | |
| CGCAATGTGACTGTAAAGAT+AGG | + | chr8_1:13323630-13323649 | Msa1179730:CDS | 40.0% | |
| TCAGTATTACCTCAAAAGCC+TGG | - | chr8_1:13323671-13323690 | None:intergenic | 40.0% | |
| !! | TTCTAAGGTGGCATTTATGG+TGG | + | chr8_1:13323931-13323950 | Msa1179730:CDS | 40.0% |
| ! | TCTAAGGTGGCATTTATGGT+GGG | + | chr8_1:13323932-13323951 | Msa1179730:CDS | 40.0% |
| TAGAGAGGAGAGGACAACAA+AGG | + | chr8_1:13318242-13318261 | Msa1179730:five_prime_UTR | 45.0% | |
| AAGCCACCTCAAGGATACAA+AGG | - | chr8_1:13319184-13319203 | None:intergenic | 45.0% | |
| TTTGTATCCTTGAGGTGGCT+TGG | + | chr8_1:13319183-13319202 | Msa1179730:intron | 45.0% | |
| CTTTGCACTGTGCACTAATG+AGG | + | chr8_1:13319226-13319245 | Msa1179730:intron | 45.0% | |
| GCAGCATATGAACAGGTGTT+TGG | + | chr8_1:13319289-13319308 | Msa1179730:intron | 45.0% | |
| ! | GAACAGGTGTTTGGTGATTG+AGG | + | chr8_1:13319298-13319317 | Msa1179730:intron | 45.0% |
| TATGTGGAAACGGAAACAGG+TGG | + | chr8_1:13319422-13319441 | Msa1179730:intron | 45.0% | |
| AACGGAAACAGGTGGTGATT+AGG | + | chr8_1:13319430-13319449 | Msa1179730:intron | 45.0% | |
| GACCGAATCCAAATGCAACT+AGG | + | chr8_1:13319653-13319672 | Msa1179730:intron | 45.0% | |
| !! | TTTCTGGCTGAGTCTTTGGT+GGG | + | chr8_1:13320135-13320154 | Msa1179730:intron | 45.0% |
| ! | CAAGATTGGGTTTAGGGTGT+TGG | + | chr8_1:13320346-13320365 | Msa1179730:CDS | 45.0% |
| !! | GGTTTAGGGTGTTGGATTCA+TGG | + | chr8_1:13320354-13320373 | Msa1179730:CDS | 45.0% |
| TGGAATGTCAGTGCTAGCAA+TGG | + | chr8_1:13320374-13320393 | Msa1179730:CDS | 45.0% | |
| GGAATGTCAGTGCTAGCAAT+GGG | + | chr8_1:13320375-13320394 | Msa1179730:CDS | 45.0% | |
| TAGCAATGGGAACCAACACT+TGG | + | chr8_1:13320388-13320407 | Msa1179730:CDS | 45.0% | |
| ! | GCCTGTTGATCACCCTTTTA+AGG | + | chr8_1:13320666-13320685 | Msa1179730:CDS | 45.0% |
| !!! | CACCCTTTTAAGGTGGTGTT+TGG | + | chr8_1:13320676-13320695 | Msa1179730:CDS | 45.0% |
| !! | GGTGTTTGGTTCTGGTACAA+AGG | + | chr8_1:13320690-13320709 | Msa1179730:CDS | 45.0% |
| ! | GTTCTGGTACAAAGGTGCAA+AGG | + | chr8_1:13320698-13320717 | Msa1179730:CDS | 45.0% |
| TTGAAGCGAAATTCATGCGG+AGG | - | chr8_1:13320745-13320764 | None:intergenic | 45.0% | |
| GGCTTGAAGCGAAATTCATG+CGG | - | chr8_1:13320748-13320767 | None:intergenic | 45.0% | |
| ACTCATGCTCAATGCAAGCT+TGG | + | chr8_1:13321204-13321223 | Msa1179730:CDS | 45.0% | |
| ! | ATCCGGTTGTCCAGACTTTT+AGG | + | chr8_1:13321366-13321385 | Msa1179730:CDS | 45.0% |
| ! | TCCGGTTGTCCAGACTTTTA+GGG | + | chr8_1:13321367-13321386 | Msa1179730:CDS | 45.0% |
| CAGCCTAAAACAAACTCACC+TGG | - | chr8_1:13321393-13321412 | None:intergenic | 45.0% | |
| ATTCAACACTGAGCTATGGC+TGG | + | chr8_1:13321950-13321969 | Msa1179730:intron | 45.0% | |
| !! | AATGTTGGTGCTGAATCCTG+CGG | + | chr8_1:13322216-13322235 | Msa1179730:intron | 45.0% |
| ! | ATTGGTGGCAGAAGGATAGT+TGG | + | chr8_1:13322608-13322627 | Msa1179730:intron | 45.0% |
| ATCATTATCGCCACAAACGG+AGG | - | chr8_1:13322785-13322804 | None:intergenic | 45.0% | |
| ! | AATTTGCTTGGCCAACTTGG+TGG | - | chr8_1:13322908-13322927 | None:intergenic | 45.0% |
| !!! | TTTTGGTTTCGCATCAGCCA+TGG | + | chr8_1:13323039-13323058 | Msa1179730:intron | 45.0% |
| GGCATGACTAACAGATGGTA+TGG | + | chr8_1:13323222-13323241 | Msa1179730:intron | 45.0% | |
| !!! | GTTTTTTTTTTTTTTTTTTA+TGG | + | chr8_1:13318577-13318596 | Msa1179730:intron | 5.0% |
| CTTTATCTGTAGGTCGGTCC+CGG | - | chr8_1:13318220-13318239 | None:intergenic | 50.0% | |
| CGGAAGGGTAAATAGTGTGG+TGG | + | chr8_1:13318369-13318388 | Msa1179730:five_prime_UTR | 50.0% | |
| GTGGTGGTTGTCTTCTCCAA+AGG | + | chr8_1:13318385-13318404 | Msa1179730:five_prime_UTR | 50.0% | |
| GGTCTGCCTTTGTATCCTTG+AGG | + | chr8_1:13319175-13319194 | Msa1179730:intron | 50.0% | |
| CTGCCTTTGTATCCTTGAGG+TGG | + | chr8_1:13319178-13319197 | Msa1179730:intron | 50.0% | |
| ! | ATCCTTGAGGTGGCTTGGAT+TGG | + | chr8_1:13319188-13319207 | Msa1179730:intron | 50.0% |
| ATCCAATCCAAGCCACCTCA+AGG | - | chr8_1:13319193-13319212 | None:intergenic | 50.0% | |
| CACTGTGCACTAATGAGGAG+AGG | + | chr8_1:13319231-13319250 | Msa1179730:intron | 50.0% | |
| GAGAGGCTTGCAATCTTCTG+AGG | + | chr8_1:13319248-13319267 | Msa1179730:intron | 50.0% | |
| ! | GGTGTTTGGTGATTGAGGTC+CGG | + | chr8_1:13319303-13319322 | Msa1179730:intron | 50.0% |
| ! | GTGTTTGGTGATTGAGGTCC+GGG | + | chr8_1:13319304-13319323 | Msa1179730:intron | 50.0% |
| !! | CTTTCTGGCTGAGTCTTTGG+TGG | + | chr8_1:13320134-13320153 | Msa1179730:intron | 50.0% |
| ! | CTTCCGGTAGTTTGCACTGT+TGG | + | chr8_1:13320235-13320254 | Msa1179730:intron | 50.0% |
| TGTGTAGGGTTTCGATGTCG+AGG | + | chr8_1:13320279-13320298 | Msa1179730:intron | 50.0% | |
| TGGAGGTCGTTGATCGAAGA+AGG | + | chr8_1:13320589-13320608 | Msa1179730:CDS | 50.0% | |
| CATGCTCAATGCAAGCTTGG+AGG | + | chr8_1:13321207-13321226 | Msa1179730:CDS | 50.0% | |
| GCCCTAAAAGTCTGGACAAC+CGG | - | chr8_1:13321371-13321390 | None:intergenic | 50.0% | |
| !!! | TTGTCCAGACTTTTAGGGCC+AGG | + | chr8_1:13321372-13321391 | Msa1179730:CDS | 50.0% |
| !! | GGGCCAGGTGAGTTTGTTTT+AGG | + | chr8_1:13321387-13321406 | Msa1179730:intron | 50.0% |
| TGCACAATGAGGGTCATTGG+TGG | + | chr8_1:13322593-13322612 | Msa1179730:intron | 50.0% | |
| !! | AGAAGTGTTGCGAAGACGAC+TGG | - | chr8_1:13322684-13322703 | None:intergenic | 50.0% |
| CAGCAATCTTCCTCCGTTTG+TGG | + | chr8_1:13322772-13322791 | Msa1179730:intron | 50.0% | |
| TTCACCACAAGAACGCTTCG+CGG | - | chr8_1:13322833-13322852 | None:intergenic | 50.0% | |
| CACTTGACCAAAAGCAGCCA+TGG | - | chr8_1:13323059-13323078 | None:intergenic | 50.0% | |
| AGGGGATTTCAGTGTTAGCC+AGG | + | chr8_1:13323650-13323669 | Msa1179730:CDS | 50.0% | |
| ! | CAGTGTTAGCCAGGCTTTTG+AGG | + | chr8_1:13323659-13323678 | Msa1179730:CDS | 50.0% |
| GGGTTGGGAGTGATCTTGCT+TGG | + | chr8_1:13319335-13319354 | Msa1179730:intron | 55.0% | |
| TTGCTGATCGGAAGGACGCT+GGG | + | chr8_1:13321163-13321182 | Msa1179730:CDS | 55.0% | |
| CTCACCTGGCCCTAAAAGTC+TGG | - | chr8_1:13321379-13321398 | None:intergenic | 55.0% | |
| ! | TGAGGGTCATTGGTGGCAGA+AGG | + | chr8_1:13322600-13322619 | Msa1179730:intron | 55.0% |
| TCACCACAAGAACGCTTCGC+GGG | - | chr8_1:13322832-13322851 | None:intergenic | 55.0% | |
| !! | GCATCAGCCATGGCTGCTTT+TGG | + | chr8_1:13323049-13323068 | Msa1179730:intron | 55.0% |
| GTGATTGAGGTCCGGGCTTG+TGG | + | chr8_1:13319311-13319330 | Msa1179730:intron | 60.0% | |
| ATTGAGGTCCGGGCTTGTGG+TGG | + | chr8_1:13319314-13319333 | Msa1179730:intron | 60.0% | |
| TTGAGGTCCGGGCTTGTGGT+GGG | + | chr8_1:13319315-13319334 | Msa1179730:intron | 60.0% | |
| CTTGCTGATCGGAAGGACGC+TGG | + | chr8_1:13321162-13321181 | Msa1179730:CDS | 60.0% | |
| ! | ACTCCCGCGAAGCGTTCTTG+TGG | + | chr8_1:13322826-13322845 | Msa1179730:CDS | 60.0% |
| !! | GTCCGGGCTTGTGGTGGGTT+GGG | + | chr8_1:13319320-13319339 | Msa1179730:intron | 65.0% |
| CTCCCAACCCACCACAAGCC+CGG | - | chr8_1:13319325-13319344 | None:intergenic | 65.0% | |
| TGATCGGAAGGACGCTGGGC+CGG | + | chr8_1:13321167-13321186 | Msa1179730:CDS | 65.0% | |
| !! | GGTCCGGGCTTGTGGTGGGT+TGG | + | chr8_1:13319319-13319338 | Msa1179730:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 13318212 | 13324003 | 13318212 | ID=Msa1179730;Name=Msa1179730 |
| chr8_1 | mRNA | 13318212 | 13324003 | 13318212 | ID=Msa1179730-mRNA-1;Parent=Msa1179730;Name=Msa1179730-mRNA-1;_AED=0.26;_eAED=0.26;_QI=202|0.42|0.5|0.75|0.85|0.75|8|0|300 |
| chr8_1 | exon | 13318212 | 13318406 | 13318212 | ID=Msa1179730-mRNA-1:exon:4835;Parent=Msa1179730-mRNA-1 |
| chr8_1 | exon | 13320286 | 13320433 | 13320286 | ID=Msa1179730-mRNA-1:exon:4836;Parent=Msa1179730-mRNA-1 |
| chr8_1 | exon | 13320544 | 13320809 | 13320544 | ID=Msa1179730-mRNA-1:exon:4837;Parent=Msa1179730-mRNA-1 |
| chr8_1 | exon | 13321104 | 13321228 | 13321104 | ID=Msa1179730-mRNA-1:exon:4838;Parent=Msa1179730-mRNA-1 |
| chr8_1 | exon | 13321303 | 13321393 | 13321303 | ID=Msa1179730-mRNA-1:exon:4839;Parent=Msa1179730-mRNA-1 |
| chr8_1 | exon | 13322775 | 13322865 | 13322775 | ID=Msa1179730-mRNA-1:exon:4840;Parent=Msa1179730-mRNA-1 |
| chr8_1 | exon | 13323585 | 13323680 | 13323585 | ID=Msa1179730-mRNA-1:exon:4841;Parent=Msa1179730-mRNA-1 |
| chr8_1 | exon | 13323911 | 13324003 | 13323911 | ID=Msa1179730-mRNA-1:exon:4842;Parent=Msa1179730-mRNA-1 |
| chr8_1 | five_prime_UTR | 13318212 | 13318406 | 13318212 | ID=Msa1179730-mRNA-1:five_prime_utr;Parent=Msa1179730-mRNA-1 |
| chr8_1 | five_prime_UTR | 13320286 | 13320292 | 13320286 | ID=Msa1179730-mRNA-1:five_prime_utr;Parent=Msa1179730-mRNA-1 |
| chr8_1 | CDS | 13320293 | 13320433 | 13320293 | ID=Msa1179730-mRNA-1:cds;Parent=Msa1179730-mRNA-1 |
| chr8_1 | CDS | 13320544 | 13320809 | 13320544 | ID=Msa1179730-mRNA-1:cds;Parent=Msa1179730-mRNA-1 |
| chr8_1 | CDS | 13321104 | 13321228 | 13321104 | ID=Msa1179730-mRNA-1:cds;Parent=Msa1179730-mRNA-1 |
| chr8_1 | CDS | 13321303 | 13321393 | 13321303 | ID=Msa1179730-mRNA-1:cds;Parent=Msa1179730-mRNA-1 |
| chr8_1 | CDS | 13322775 | 13322865 | 13322775 | ID=Msa1179730-mRNA-1:cds;Parent=Msa1179730-mRNA-1 |
| chr8_1 | CDS | 13323585 | 13323680 | 13323585 | ID=Msa1179730-mRNA-1:cds;Parent=Msa1179730-mRNA-1 |
| chr8_1 | CDS | 13323911 | 13324003 | 13323911 | ID=Msa1179730-mRNA-1:cds;Parent=Msa1179730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
