Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179750 | XP_003625202.1 | 89.157 | 83 | 9 | 0 | 205 | 287 | 105 | 187 | 1.84e-40 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179750 | sp|Q0J2R1|P2C67_ORYSJ | 57.971 | 69 | 22 | 1 | 147 | 208 | 191 | 259 | 2.84e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179750 | G7KUG0 | 89.157 | 83 | 9 | 0 | 205 | 287 | 105 | 187 | 8.77e-41 | 150 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1179730 | Msa1179750 | 0.828235 | 1.006355e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179750 | MtrunA17_Chr7g0258191 | 89.157 | 83 | 9 | 0 | 205 | 287 | 105 | 187 | 1.69e-44 | 150 |
| Msa1179750 | MtrunA17_Chr6g0483411 | 87.273 | 55 | 7 | 0 | 154 | 208 | 158 | 212 | 5.89e-24 | 99.0 |
| Msa1179750 | MtrunA17_Chr2g0290961 | 94.000 | 50 | 3 | 0 | 35 | 84 | 128 | 177 | 7.21e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179750 | AT1G18030.2 | 54.545 | 55 | 25 | 0 | 154 | 208 | 188 | 242 | 4.47e-11 | 62.8 |
| Msa1179750 | AT1G18030.1 | 54.545 | 55 | 25 | 0 | 154 | 208 | 188 | 242 | 6.60e-11 | 62.8 |
Find 85 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGTATGACTATAATTT+TGG | 0.126971 | 8_1:-13340570 | Msa1179750:three_prime_UTR |
| ACCCCAACAATTTCTATAAA+AGG | 0.131276 | 8_1:-13343984 | Msa1179750:CDS |
| TCTTCATTCTCTGCTGCTTT+TGG | 0.169828 | 8_1:-13341133 | Msa1179750:CDS |
| CTCAGCTTTATGCAGGATTT+TGG | 0.208581 | 8_1:+13341082 | None:intergenic |
| ATTACCAAGTACTCTGCTTT+TGG | 0.244564 | 8_1:+13340714 | None:intergenic |
| GACTCCATCTGAGTTATCTT+TGG | 0.281600 | 8_1:+13342134 | None:intergenic |
| TCATCTTCTGATGATTTATA+CGG | 0.286886 | 8_1:-13340739 | Msa1179750:three_prime_UTR |
| GTCAAGCATGATGTTAGTTT+TGG | 0.309266 | 8_1:-13344011 | Msa1179750:CDS |
| TCGATAAATCTTGCACCAAT+TGG | 0.320153 | 8_1:-13342345 | Msa1179750:CDS |
| TGAAGATGGATCAGAGAAAA+TGG | 0.322974 | 8_1:+13341150 | None:intergenic |
| GCAAAAGGGAAAGGAGATAT+TGG | 0.324335 | 8_1:-13340773 | Msa1179750:three_prime_UTR |
| TGAGAGAAGGAGGGAGAGAC+TGG | 0.348860 | 8_1:-13341224 | Msa1179750:CDS |
| TCAGGAATAACTTATCTGTT+AGG | 0.362537 | 8_1:-13342398 | Msa1179750:intron |
| TACCCAAGAGCCTTTAGTTA+AGG | 0.385356 | 8_1:-13344576 | Msa1179750:intron |
| GCGCGTTCATGTGGGAATAT+AGG | 0.393317 | 8_1:+13342072 | None:intergenic |
| AGCTTGATCTTCCTTGGTTG+TGG | 0.405476 | 8_1:+13344834 | None:intergenic |
| AGGAGATATCATAGAGCAAA+AGG | 0.413539 | 8_1:-13340788 | Msa1179750:three_prime_UTR |
| AAGCAGAAGATTAAGCAAAC+TGG | 0.415901 | 8_1:+13340687 | None:intergenic |
| AAACTATTGAAGAGAATTGA+AGG | 0.415956 | 8_1:-13340808 | Msa1179750:three_prime_UTR |
| CAAGGAAGATCAAGCTGAAA+AGG | 0.419626 | 8_1:-13344827 | Msa1179750:CDS |
| CGATAAATCTTGCACCAATT+GGG | 0.428060 | 8_1:-13342344 | Msa1179750:CDS |
| CCCTTGCAGACACGGTTTGA+TGG | 0.428693 | 8_1:+13344798 | None:intergenic |
| AGATCATATTCTAGCCCAAT+TGG | 0.431774 | 8_1:+13342330 | None:intergenic |
| TTTGGAACTTTACCTCCATA+AGG | 0.435533 | 8_1:+13341055 | None:intergenic |
| CCCCAACAATTTCTATAAAA+GGG | 0.443142 | 8_1:-13343983 | Msa1179750:intron |
| ATAAAGCTGAGAACACCTTA+TGG | 0.444677 | 8_1:-13341070 | Msa1179750:CDS |
| TGACCGAGCTAACACTGCTT+TGG | 0.452898 | 8_1:+13342173 | None:intergenic |
| AGTTGAGAAAGTAGAAGAAG+AGG | 0.453575 | 8_1:-13344033 | Msa1179750:CDS |
| TGTTGCCTCAGGTTTGCAAT+TGG | 0.461059 | 8_1:-13344896 | Msa1179750:intron |
| AAAACAATGGCCTTGAGAGC+AGG | 0.462231 | 8_1:+13342111 | None:intergenic |
| AAAAGCCAGAACATCAGAAA+AGG | 0.466003 | 8_1:-13340883 | Msa1179750:three_prime_UTR |
| TACCTTAACTAAAGGCTCTT+GGG | 0.466328 | 8_1:+13344574 | None:intergenic |
| ATACCTTAACTAAAGGCTCT+TGG | 0.467325 | 8_1:+13344573 | None:intergenic |
| GCAAGTGGTGAAAATGTAAA+CGG | 0.467515 | 8_1:-13344659 | Msa1179750:CDS |
| CAAAAGGGAAAGGAGATATT+GGG | 0.469432 | 8_1:-13340772 | Msa1179750:three_prime_UTR |
| TAAATTAAGCAAGGAAATCA+AGG | 0.477824 | 8_1:-13344710 | Msa1179750:intron |
| ATCTTCTTCAATTCACCTCA+TGG | 0.478558 | 8_1:+13340844 | None:intergenic |
| TGAATGCGTGCGCGTTCATG+TGG | 0.478756 | 8_1:+13342063 | None:intergenic |
| AGGTGTTCTCAGCTTTATGC+AGG | 0.482387 | 8_1:+13341075 | None:intergenic |
| GGTTCCAAAAGCAGAGTACT+TGG | 0.487472 | 8_1:-13340718 | Msa1179750:three_prime_UTR |
| ATATCACATACCTTAACTAA+AGG | 0.488419 | 8_1:+13344566 | None:intergenic |
| CAAGTGGTGAAAATGTAAAC+GGG | 0.492332 | 8_1:-13344658 | Msa1179750:CDS |
| CAGAACATCAGAAAAGGGTT+AGG | 0.496050 | 8_1:-13340877 | Msa1179750:three_prime_UTR |
| AAACTTCTTGCTGCTGAAGA+TGG | 0.497513 | 8_1:-13341013 | Msa1179750:CDS |
| GACATATGCTAATATAGTGT+TGG | 0.497968 | 8_1:-13342376 | Msa1179750:CDS |
| GTCAGCTGGTTAGCATGAAC+TGG | 0.509893 | 8_1:+13341172 | None:intergenic |
| TCAAGGCGGCGAGGGTACAT+TGG | 0.514866 | 8_1:-13344693 | Msa1179750:CDS |
| GCTGAGGAAATAGAGCAAAC+TGG | 0.522305 | 8_1:-13341199 | Msa1179750:CDS |
| CAAGGGAGCACGTGTCTGCA+AGG | 0.524814 | 8_1:-13344867 | Msa1179750:CDS |
| ATTGATGTTGACGATAATGA+TGG | 0.526717 | 8_1:-13344626 | Msa1179750:CDS |
| GCTCGGTCAACTATATCTGA+TGG | 0.526827 | 8_1:-13342159 | Msa1179750:CDS |
| GATCAGAGAAAATGGTCAGC+TGG | 0.530234 | 8_1:+13341158 | None:intergenic |
| TTCAGGCGATTGAGAGAAGG+AGG | 0.537808 | 8_1:-13341234 | Msa1179750:intron |
| AAAGCCAGAACATCAGAAAA+GGG | 0.541727 | 8_1:-13340882 | Msa1179750:three_prime_UTR |
| AAAGCAGCAGAGAATGAAGA+TGG | 0.546402 | 8_1:+13341136 | None:intergenic |
| GAGGGAGAGACTGGGAGCTG+AGG | 0.560209 | 8_1:-13341215 | Msa1179750:CDS |
| AAACAATGGCCTTGAGAGCA+GGG | 0.560271 | 8_1:+13342112 | None:intergenic |
| CAAGGAAATCAAGGCGGCGA+GGG | 0.563096 | 8_1:-13344701 | Msa1179750:CDS |
| AATTCACCTCATGGACATCA+AGG | 0.566381 | 8_1:+13340853 | None:intergenic |
| ATGTTCTCTTGTCAAAACAA+TGG | 0.566525 | 8_1:+13342098 | None:intergenic |
| ACGCCAAAGCAGTGTTAGCT+CGG | 0.567395 | 8_1:-13342176 | Msa1179750:CDS |
| AGATGGAGTCCCTGCTCTCA+AGG | 0.573242 | 8_1:-13342121 | Msa1179750:CDS |
| GGATCCAAAGATAACTCAGA+TGG | 0.576072 | 8_1:-13342138 | Msa1179750:CDS |
| TATCATAGAGCAAAAGGGAA+AGG | 0.576302 | 8_1:-13340782 | Msa1179750:three_prime_UTR |
| GGAGATATCATAGAGCAAAA+GGG | 0.578478 | 8_1:-13340787 | Msa1179750:three_prime_UTR |
| GTGTTCAGGCGATTGAGAGA+AGG | 0.580963 | 8_1:-13341237 | Msa1179750:intron |
| GAGAGAAGGAGGGAGAGACT+GGG | 0.581209 | 8_1:-13341223 | Msa1179750:CDS |
| TGAACGCGCACGCATTCAGA+AGG | 0.586119 | 8_1:-13342058 | Msa1179750:intron |
| GATTGCAATAGCTTCTTCTG+AGG | 0.590753 | 8_1:+13340971 | None:intergenic |
| CTAAAACAAACCAAGACCAA+AGG | 0.599852 | 8_1:+13342284 | None:intergenic |
| TATCAACGAATGATGATGCA+AGG | 0.603258 | 8_1:+13340631 | None:intergenic |
| GAATGCGTGCGCGTTCATGT+GGG | 0.613594 | 8_1:+13342064 | None:intergenic |
| TCGATTGATATAATTGAGTG+TGG | 0.613826 | 8_1:-13340950 | Msa1179750:three_prime_UTR |
| ATACATTGTAATATATACAA+TGG | 0.617639 | 8_1:+13340584 | None:intergenic |
| AAGGGAGCACGTGTCTGCAA+GGG | 0.620486 | 8_1:-13344866 | Msa1179750:CDS |
| TTGCAGACACGGTTTGATGG+TGG | 0.622014 | 8_1:+13344801 | None:intergenic |
| TTGGAGAAAGCCGATGCAAG+TGG | 0.629177 | 8_1:-13344674 | Msa1179750:CDS |
| GCAAGGAAATCAAGGCGGCG+AGG | 0.642048 | 8_1:-13344702 | Msa1179750:CDS |
| GGTATTGTCAGCCACAACCA+AGG | 0.677998 | 8_1:-13344845 | Msa1179750:CDS |
| TTGATGTTGACGATAATGAT+GGG | 0.681131 | 8_1:-13344625 | Msa1179750:CDS |
| TCAGGCGATTGAGAGAAGGA+GGG | 0.683707 | 8_1:-13341233 | Msa1179750:intron |
| AAGCTGAGAACACCTTATGG+AGG | 0.683993 | 8_1:-13341067 | Msa1179750:CDS |
| TTAGGACCTTGATGTCCATG+AGG | 0.720116 | 8_1:-13340859 | Msa1179750:three_prime_UTR |
| AAGTGGTGAAAATGTAAACG+GGG | 0.739844 | 8_1:-13344657 | Msa1179750:CDS |
| ATTAAGCAAGGAAATCAAGG+CGG | 0.753480 | 8_1:-13344707 | Msa1179750:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAAGAAGATTAA+TGG | + | chr8_1:13344282-13344301 | None:intergenic | 10.0% |
| !! | GAATAAAAAAAATCTAAACT+TGG | + | chr8_1:13342629-13342648 | None:intergenic | 15.0% |
| !! | ATAAAACGTTTAAACAAAAA+CGG | + | chr8_1:13342826-13342845 | None:intergenic | 15.0% |
| !!! | AATTTTATCCTTTATAAAAG+AGG | + | chr8_1:13342957-13342976 | None:intergenic | 15.0% |
| !! | TTCTAGCAAATAATAAAAAT+AGG | + | chr8_1:13344058-13344077 | None:intergenic | 15.0% |
| !! | TTAAGAAATAATAAAGAATG+AGG | - | chr8_1:13344225-13344244 | Msa1179750:intron | 15.0% |
| !!! | CTTCTTATTATTTTTTTTAG+TGG | - | chr8_1:13344287-13344306 | Msa1179750:intron | 15.0% |
| !! | ATACATTGTAATATATACAA+TGG | + | chr8_1:13345278-13345297 | None:intergenic | 15.0% |
| !! | GATAATACAAATCTTTGTAA+AGG | - | chr8_1:13340773-13340792 | Msa1179750:three_prime_UTR | 20.0% |
| !!! | ATCATTTACAAAGTTGATAT+TGG | + | chr8_1:13340832-13340851 | None:intergenic | 20.0% |
| !!! | TTTTGAGATTAAATCATACT+TGG | - | chr8_1:13341532-13341551 | Msa1179750:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | - | chr8_1:13341575-13341594 | Msa1179750:intron | 20.0% |
| !!! | TTCTTTGTTTTGTTTTGTTT+TGG | - | chr8_1:13341761-13341780 | Msa1179750:intron | 20.0% |
| !! | AGAGTAATATGCTTATTTAT+GGG | - | chr8_1:13342057-13342076 | Msa1179750:intron | 20.0% |
| !!! | AAACTTATTTATCTTTTAGC+TGG | - | chr8_1:13342085-13342104 | Msa1179750:CDS | 20.0% |
| !!! | AGTTTTTTTCTTCAGAAAAA+AGG | - | chr8_1:13342281-13342300 | Msa1179750:intron | 20.0% |
| !!! | ATTTTCCTTTATTCTCTTAA+GGG | - | chr8_1:13342485-13342504 | Msa1179750:intron | 20.0% |
| !!! | TAGTTACCTTTTAGTAAAAT+TGG | + | chr8_1:13342660-13342679 | None:intergenic | 20.0% |
| !! | TAAAACGTTTAAACAAAAAC+GGG | + | chr8_1:13342825-13342844 | None:intergenic | 20.0% |
| !!! | TTAAAAAGCATATATCGATT+GGG | - | chr8_1:13342878-13342897 | Msa1179750:intron | 20.0% |
| !! | TGTTGTATATAAACTATCAT+TGG | + | chr8_1:13343176-13343195 | None:intergenic | 20.0% |
| !! | GTTAAATGTTCTATATATAG+AGG | + | chr8_1:13343961-13343980 | None:intergenic | 20.0% |
| !! | AGCAAATAATAAAAATAGGT+TGG | + | chr8_1:13344054-13344073 | None:intergenic | 20.0% |
| !!! | GATGCATTTCATTTTAAAAT+TGG | - | chr8_1:13344172-13344191 | Msa1179750:intron | 20.0% |
| !! | TATACATACAAATGAAGTTT+AGG | + | chr8_1:13344316-13344335 | None:intergenic | 20.0% |
| !!! | TGATAATTTTGTTGCAATTT+TGG | - | chr8_1:13345246-13345265 | Msa1179750:intron | 20.0% |
| !!! | ACAATGTATGACTATAATTT+TGG | - | chr8_1:13345289-13345308 | Msa1179750:intron | 20.0% |
| ! | TAAAGGAATAATGATGAGAA+AGG | - | chr8_1:13340790-13340809 | Msa1179750:three_prime_UTR | 25.0% |
| !!! | TACAAAGTTGATATTGGAAA+AGG | + | chr8_1:13340826-13340845 | None:intergenic | 25.0% |
| ! | TAAATTAAGCAAGGAAATCA+AGG | - | chr8_1:13341149-13341168 | Msa1179750:CDS | 25.0% |
| ! | ATATCACATACCTTAACTAA+AGG | + | chr8_1:13341296-13341315 | None:intergenic | 25.0% |
| !! | TATGTGATATATTTTCCTCT+TGG | - | chr8_1:13341306-13341325 | Msa1179750:intron | 25.0% |
| !! | ATGTGATATATTTTCCTCTT+GGG | - | chr8_1:13341307-13341326 | Msa1179750:intron | 25.0% |
| !!! | AAGTTGCTTTTATGATTCTA+AGG | - | chr8_1:13341345-13341364 | Msa1179750:intron | 25.0% |
| !!! | AGTTGCTTTTATGATTCTAA+GGG | - | chr8_1:13341346-13341365 | Msa1179750:intron | 25.0% |
| !!! | AGGGTTTGATTATTTTGTTT+TGG | - | chr8_1:13341365-13341384 | Msa1179750:intron | 25.0% |
| !!! | TTTTGTTTTGGTTTGTTGTT+TGG | - | chr8_1:13341377-13341396 | Msa1179750:intron | 25.0% |
| !! | CTTGATGACTTAAAAATTGA+TGG | - | chr8_1:13341616-13341635 | Msa1179750:intron | 25.0% |
| !! | ACCCTTTTATAGAAATTGTT+GGG | + | chr8_1:13341880-13341899 | None:intergenic | 25.0% |
| !! | TACCCTTTTATAGAAATTGT+TGG | + | chr8_1:13341881-13341900 | None:intergenic | 25.0% |
| !!! | TCTTTAACTGGTTTTTCAAA+AGG | + | chr8_1:13342015-13342034 | None:intergenic | 25.0% |
| ! | GAGAGTAATATGCTTATTTA+TGG | - | chr8_1:13342056-13342075 | Msa1179750:intron | 25.0% |
| ! | TGTAATGTTATAATTCTACC+AGG | - | chr8_1:13342178-13342197 | Msa1179750:CDS | 25.0% |
| !! | ACTAATTAGAGATTTAGAGT+CGG | + | chr8_1:13342264-13342283 | None:intergenic | 25.0% |
| !! | TTTTCTTCAGAAAAAAGGAT+TGG | - | chr8_1:13342286-13342305 | Msa1179750:intron | 25.0% |
| ! | TTTCTTCAGAAAAAAGGATT+GGG | - | chr8_1:13342287-13342306 | Msa1179750:intron | 25.0% |
| ! | GAATAAAGGAAAATGTTAAC+CGG | + | chr8_1:13342479-13342498 | None:intergenic | 25.0% |
| !! | CATTTTCCTTTATTCTCTTA+AGG | - | chr8_1:13342484-13342503 | Msa1179750:intron | 25.0% |
| !! | TACCTTTTAGTAAAATTGGT+TGG | + | chr8_1:13342656-13342675 | None:intergenic | 25.0% |
| ! | TAGTTTCACAAGAAATATAG+AGG | - | chr8_1:13342714-13342733 | Msa1179750:intron | 25.0% |
| ! | AGTTTCACAAGAAATATAGA+GGG | - | chr8_1:13342715-13342734 | Msa1179750:intron | 25.0% |
| !!! | CAATCGATATATGCTTTTTA+AGG | + | chr8_1:13342879-13342898 | None:intergenic | 25.0% |
| !! | CTTAAAAAGCATATATCGAT+TGG | - | chr8_1:13342877-13342896 | Msa1179750:intron | 25.0% |
| ! | ATAAAGGATAAAATTGTGCA+AGG | - | chr8_1:13342962-13342981 | Msa1179750:intron | 25.0% |
| !!! | TCTCATTGGTTTGATTATTA+TGG | + | chr8_1:13343200-13343219 | None:intergenic | 25.0% |
| !! | TTGTTAGCTGAATTTTTGTT+AGG | - | chr8_1:13343639-13343658 | Msa1179750:intron | 25.0% |
| ! | AAATATCAAGTAACAGGTAT+TGG | + | chr8_1:13343873-13343892 | None:intergenic | 25.0% |
| ! | ACAAAGAAATATCAAGTAAC+AGG | + | chr8_1:13343879-13343898 | None:intergenic | 25.0% |
| ! | TCTATATATAGAGGTCAAAA+TGG | + | chr8_1:13343952-13343971 | None:intergenic | 25.0% |
| ! | TGAATATTTCAATTACTTCC+TGG | + | chr8_1:13344137-13344156 | None:intergenic | 25.0% |
| ! | TGTATGTATAAATTGAAAGC+AGG | - | chr8_1:13344326-13344345 | Msa1179750:intron | 25.0% |
| ! | TACAACATGGATAAAGAATA+AGG | - | chr8_1:13344361-13344380 | Msa1179750:intron | 25.0% |
| ! | ATAAGATCTTCATTAACCAA+GGG | - | chr8_1:13344419-13344438 | Msa1179750:intron | 25.0% |
| ! | AGATGTCATTATTAATAGAG+AGG | + | chr8_1:13344501-13344520 | None:intergenic | 25.0% |
| !!! | GTGTTTTTAATATTGTGTTC+AGG | - | chr8_1:13344608-13344627 | Msa1179750:CDS | 25.0% |
| ! | AAACTATTGAAGAGAATTGA+AGG | - | chr8_1:13345051-13345070 | Msa1179750:intron | 25.0% |
| ! | TCATCTTCTGATGATTTATA+CGG | - | chr8_1:13345120-13345139 | Msa1179750:intron | 25.0% |
| !! | ATGTGGAATTGCTTGTTATT+GGG | + | chr8_1:13340717-13340736 | None:intergenic | 30.0% |
| ! | GCTATAGTTTCATTTTCATG+TGG | + | chr8_1:13340734-13340753 | None:intergenic | 30.0% |
| TCACAAATAAAATACCTCGA+GGG | + | chr8_1:13340866-13340885 | None:intergenic | 30.0% | |
| ATCACAAATAAAATACCTCG+AGG | + | chr8_1:13340867-13340886 | None:intergenic | 30.0% | |
| ! | CTGTTGTTTAGTTAGATTTG+CGG | - | chr8_1:13340892-13340911 | Msa1179750:three_prime_UTR | 30.0% |
| TTTGCAATTGGCAAAAACAA+GGG | - | chr8_1:13340975-13340994 | Msa1179750:three_prime_UTR | 30.0% | |
| TTAATCTGTCACAAGTTTGA+TGG | + | chr8_1:13341132-13341151 | None:intergenic | 30.0% | |
| GTGACAGATTAAATTAAGCA+AGG | - | chr8_1:13341140-13341159 | Msa1179750:CDS | 30.0% | |
| ATTGATGTTGACGATAATGA+TGG | - | chr8_1:13341233-13341252 | Msa1179750:intron | 30.0% | |
| TTGATGTTGACGATAATGAT+GGG | - | chr8_1:13341234-13341253 | Msa1179750:intron | 30.0% | |
| !!! | GTTTTGTTTTGTTTTGGTGT+TGG | - | chr8_1:13341767-13341786 | Msa1179750:intron | 30.0% |
| ACCCCAACAATTTCTATAAA+AGG | - | chr8_1:13341875-13341894 | Msa1179750:intron | 30.0% | |
| ! | CCCTTTTATAGAAATTGTTG+GGG | + | chr8_1:13341879-13341898 | None:intergenic | 30.0% |
| CCCCAACAATTTCTATAAAA+GGG | - | chr8_1:13341876-13341895 | Msa1179750:intron | 30.0% | |
| !! | TGTCTTATTTCTTGATACCT+TGG | + | chr8_1:13342111-13342130 | None:intergenic | 30.0% |
| TACTTAGTCACTCATTCAAT+TGG | + | chr8_1:13342138-13342157 | None:intergenic | 30.0% | |
| TGTTGAATCTGTTGATACAT+AGG | + | chr8_1:13342235-13342254 | None:intergenic | 30.0% | |
| AATTAGTGATCTATAGACAC+CGG | - | chr8_1:13342457-13342476 | Msa1179750:intron | 30.0% | |
| TTTATTCTCTTAAGGGAAGT+CGG | - | chr8_1:13342492-13342511 | Msa1179750:intron | 30.0% | |
| ! | GACCAACCAATTTTACTAAA+AGG | - | chr8_1:13342651-13342670 | Msa1179750:intron | 30.0% |
| ATTTCATACTGAACTAGAGA+AGG | - | chr8_1:13342688-13342707 | Msa1179750:intron | 30.0% | |
| !!! | TACGAAGTATTGTCTACTTT+TGG | + | chr8_1:13342994-13343013 | None:intergenic | 30.0% |
| AAAGTAGACAATACTTCGTA+AGG | - | chr8_1:13342994-13343013 | Msa1179750:intron | 30.0% | |
| AATTCTCTCTTAACCTAGAT+TGG | - | chr8_1:13343097-13343116 | Msa1179750:intron | 30.0% | |
| AAAGTTTGGTCCTTCATAAA+AGG | + | chr8_1:13343225-13343244 | None:intergenic | 30.0% | |
| AAAAACAATACCTCGAAATG+CGG | - | chr8_1:13343260-13343279 | Msa1179750:intron | 30.0% | |
| TGGGACAAAAAGTAAGTTTA+CGG | - | chr8_1:13343391-13343410 | Msa1179750:intron | 30.0% | |
| TCAGGAATAACTTATCTGTT+AGG | - | chr8_1:13343461-13343480 | Msa1179750:intron | 30.0% | |
| GACATATGCTAATATAGTGT+TGG | - | chr8_1:13343483-13343502 | Msa1179750:intron | 30.0% | |
| ! | TTCGTGATGATATTTTCCTT+TGG | - | chr8_1:13343559-13343578 | Msa1179750:intron | 30.0% |
| ! | ATGATATTTTCCTTTGGTCT+TGG | - | chr8_1:13343565-13343584 | Msa1179750:intron | 30.0% |
| !!! | CAGGTAAAAGTGCTAAATTT+TGG | - | chr8_1:13343611-13343630 | Msa1179750:intron | 30.0% |
| ! | TAGGTTTTTATCGCAAATGT+AGG | - | chr8_1:13343658-13343677 | Msa1179750:intron | 30.0% |
| ATGTTCTCTTGTCAAAACAA+TGG | + | chr8_1:13343764-13343783 | None:intergenic | 30.0% | |
| !!! | CAGGTATTGGTAAATAGTTT+TGG | + | chr8_1:13343860-13343879 | None:intergenic | 30.0% |
| ! | ATTTTGCTCAATAATGAGAG+AGG | + | chr8_1:13344007-13344026 | None:intergenic | 30.0% |
| TGGATAAAGAATAAGGAACA+AGG | - | chr8_1:13344368-13344387 | Msa1179750:intron | 30.0% | |
| GGATAAAGAATAAGGAACAA+GGG | - | chr8_1:13344369-13344388 | Msa1179750:intron | 30.0% | |
| TATGAGTGATGATCATATTG+AGG | + | chr8_1:13344402-13344421 | None:intergenic | 30.0% | |
| CATAAGATCTTCATTAACCA+AGG | - | chr8_1:13344418-13344437 | Msa1179750:intron | 30.0% | |
| TCGATTGATATAATTGAGTG+TGG | - | chr8_1:13344909-13344928 | Msa1179750:intron | 30.0% | |
| TGTTATTGGGATGACATGAA+TGG | + | chr8_1:13340704-13340723 | None:intergenic | 35.0% | |
| !! | CATGTGGAATTGCTTGTTAT+TGG | + | chr8_1:13340718-13340737 | None:intergenic | 35.0% |
| TTAGTTAGATTTGCGGTTCA+TGG | - | chr8_1:13340899-13340918 | Msa1179750:three_prime_UTR | 35.0% | |
| ATGTTATGTTATGTTGCCTC+AGG | - | chr8_1:13340952-13340971 | Msa1179750:three_prime_UTR | 35.0% | |
| GTTTGCAATTGGCAAAAACA+AGG | - | chr8_1:13340974-13340993 | Msa1179750:three_prime_UTR | 35.0% | |
| ATTAAGCAAGGAAATCAAGG+CGG | - | chr8_1:13341152-13341171 | Msa1179750:CDS | 35.0% | |
| ! | TACATTTTCACCACTTGCAT+CGG | + | chr8_1:13341198-13341217 | None:intergenic | 35.0% |
| GCAAGTGGTGAAAATGTAAA+CGG | - | chr8_1:13341200-13341219 | Msa1179750:CDS | 35.0% | |
| CAAGTGGTGAAAATGTAAAC+GGG | - | chr8_1:13341201-13341220 | Msa1179750:CDS | 35.0% | |
| AAGTGGTGAAAATGTAAACG+GGG | - | chr8_1:13341202-13341221 | Msa1179750:CDS | 35.0% | |
| TACCTTAACTAAAGGCTCTT+GGG | + | chr8_1:13341288-13341307 | None:intergenic | 35.0% | |
| ATACCTTAACTAAAGGCTCT+TGG | + | chr8_1:13341289-13341308 | None:intergenic | 35.0% | |
| !! | GGTTTGTTGTTTGGTGATTT+CGG | - | chr8_1:13341386-13341405 | Msa1179750:intron | 35.0% |
| !! | GTCTCTAAAACTGAAGTGTT+TGG | - | chr8_1:13341434-13341453 | Msa1179750:intron | 35.0% |
| AGTTGAGAAAGTAGAAGAAG+AGG | - | chr8_1:13341826-13341845 | Msa1179750:intron | 35.0% | |
| !! | GTCAAGCATGATGTTAGTTT+TGG | - | chr8_1:13341848-13341867 | Msa1179750:intron | 35.0% |
| GTTGAACAGTTCTCTTTAAC+TGG | + | chr8_1:13342027-13342046 | None:intergenic | 35.0% | |
| !! | GCATATTACTCTCTGAAGTA+TGG | + | chr8_1:13342049-13342068 | None:intergenic | 35.0% |
| !! | ATTTATCTTTTAGCTGGCCA+AGG | - | chr8_1:13342091-13342110 | Msa1179750:CDS | 35.0% |
| TAGCTCATGTAAACTAAACC+TGG | + | chr8_1:13342199-13342218 | None:intergenic | 35.0% | |
| TTCAGAAAAAAGGATTGGGT+AGG | - | chr8_1:13342291-13342310 | Msa1179750:intron | 35.0% | |
| AAAAAGGATTGGGTAGGAAT+AGG | - | chr8_1:13342297-13342316 | Msa1179750:CDS | 35.0% | |
| GACTTCCCTTAAGAGAATAA+AGG | + | chr8_1:13342493-13342512 | None:intergenic | 35.0% | |
| TTCACAAGAAATATAGAGGG+TGG | - | chr8_1:13342718-13342737 | Msa1179750:intron | 35.0% | |
| GAAAAAGTGATAGATGCTCT+AGG | - | chr8_1:13342752-13342771 | Msa1179750:intron | 35.0% | |
| CTTTATAAAAGAGGTCTCGT+TGG | + | chr8_1:13342948-13342967 | None:intergenic | 35.0% | |
| ! | CAACGAGACCTCTTTTATAA+AGG | - | chr8_1:13342946-13342965 | Msa1179750:intron | 35.0% |
| !! | GTATTGTCTACTTTTGGTGT+AGG | + | chr8_1:13342988-13343007 | None:intergenic | 35.0% |
| TGTGAGAGAGACATACTTAT+GGG | - | chr8_1:13343044-13343063 | Msa1179750:intron | 35.0% | |
| TTATGGGTGGAACAAGAAAT+TGG | - | chr8_1:13343060-13343079 | Msa1179750:intron | 35.0% | |
| TATGGGTGGAACAAGAAATT+GGG | - | chr8_1:13343061-13343080 | Msa1179750:intron | 35.0% | |
| TTAAAAGTCTCCCATCGTTT+GGG | - | chr8_1:13343142-13343161 | Msa1179750:intron | 35.0% | |
| !! | CTTCATAAAAGGTGTCTCAT+TGG | + | chr8_1:13343214-13343233 | None:intergenic | 35.0% |
| ! | CAATGAGACACCTTTTATGA+AGG | - | chr8_1:13343212-13343231 | Msa1179750:intron | 35.0% |
| TATGAAGGACCAAACTTTGA+AGG | - | chr8_1:13343227-13343246 | Msa1179750:intron | 35.0% | |
| ATGAAGGACCAAACTTTGAA+GGG | - | chr8_1:13343228-13343247 | Msa1179750:intron | 35.0% | |
| TCGATAAATCTTGCACCAAT+TGG | - | chr8_1:13343514-13343533 | Msa1179750:intron | 35.0% | |
| CGATAAATCTTGCACCAATT+GGG | - | chr8_1:13343515-13343534 | Msa1179750:intron | 35.0% | |
| AGATCATATTCTAGCCCAAT+TGG | + | chr8_1:13343532-13343551 | None:intergenic | 35.0% | |
| CTAAAACAAACCAAGACCAA+AGG | + | chr8_1:13343578-13343597 | None:intergenic | 35.0% | |
| ! | TTTTAGTGTTCTCTCAAGTC+AGG | - | chr8_1:13343592-13343611 | Msa1179750:intron | 35.0% |
| ! | GAAGGTTTAAAATGCACCAA+TGG | - | chr8_1:13343819-13343838 | Msa1179750:intron | 35.0% |
| GTGATATAATTGACCACCAT+TGG | + | chr8_1:13343838-13343857 | None:intergenic | 35.0% | |
| ! | AAACATGTTACAGAAAGTGC+AGG | + | chr8_1:13343983-13344002 | None:intergenic | 35.0% |
| CAACATAAAGTGATGCTTCT+AGG | + | chr8_1:13344082-13344101 | None:intergenic | 35.0% | |
| ACCTGAGTTAGTCAAATTGT+TGG | + | chr8_1:13344105-13344124 | None:intergenic | 35.0% | |
| TTTCAATTACTTCCTGGTTC+TGG | + | chr8_1:13344131-13344150 | None:intergenic | 35.0% | |
| TGAAGATGGATCAGAGAAAA+TGG | + | chr8_1:13344712-13344731 | None:intergenic | 35.0% | |
| !! | AGGATTTTGGTGATTTCTTG+TGG | + | chr8_1:13344767-13344786 | None:intergenic | 35.0% |
| ATAAAGCTGAGAACACCTTA+TGG | - | chr8_1:13344789-13344808 | Msa1179750:intron | 35.0% | |
| ! | TTTGGAACTTTACCTCCATA+AGG | + | chr8_1:13344807-13344826 | None:intergenic | 35.0% |
| ! | GCAATGTCGATGATGATTTT+TGG | + | chr8_1:13344825-13344844 | None:intergenic | 35.0% |
| !!! | TTTCTGATGTTCTGGCTTTT+TGG | + | chr8_1:13344976-13344995 | None:intergenic | 35.0% |
| AAAAGCCAGAACATCAGAAA+AGG | - | chr8_1:13344976-13344995 | Msa1179750:intron | 35.0% | |
| AAAGCCAGAACATCAGAAAA+GGG | - | chr8_1:13344977-13344996 | Msa1179750:intron | 35.0% | |
| ATCTTCTTCAATTCACCTCA+TGG | + | chr8_1:13345018-13345037 | None:intergenic | 35.0% | |
| AGGAGATATCATAGAGCAAA+AGG | - | chr8_1:13345071-13345090 | Msa1179750:intron | 35.0% | |
| GGAGATATCATAGAGCAAAA+GGG | - | chr8_1:13345072-13345091 | Msa1179750:intron | 35.0% | |
| TATCATAGAGCAAAAGGGAA+AGG | - | chr8_1:13345077-13345096 | Msa1179750:intron | 35.0% | |
| CAAAAGGGAAAGGAGATATT+GGG | - | chr8_1:13345087-13345106 | Msa1179750:intron | 35.0% | |
| ! | ATTACCAAGTACTCTGCTTT+TGG | + | chr8_1:13345148-13345167 | None:intergenic | 35.0% |
| AAGCAGAAGATTAAGCAAAC+TGG | + | chr8_1:13345175-13345194 | None:intergenic | 35.0% | |
| ! | TATCAACGAATGATGATGCA+AGG | + | chr8_1:13345231-13345250 | None:intergenic | 35.0% |
| GATTTCTATGATTTCCCTCG+AGG | - | chr8_1:13340849-13340868 | Msa1179750:three_prime_UTR | 40.0% | |
| ! | TTTTGCCAATTGCAAACCTG+AGG | + | chr8_1:13340971-13340990 | None:intergenic | 40.0% |
| ! | CTTTTCAGCTTGATCTTCCT+TGG | + | chr8_1:13341034-13341053 | None:intergenic | 40.0% |
| CAAGGAAGATCAAGCTGAAA+AGG | - | chr8_1:13341032-13341051 | Msa1179750:CDS | 40.0% | |
| ! | CTTTTCAGCTTGATCTTCCT+TGG | + | chr8_1:13341034-13341053 | None:intergenic | 40.0% |
| CAAGGAAGATCAAGCTGAAA+AGG | - | chr8_1:13341032-13341051 | Msa1179750:CDS | 40.0% | |
| ATCTGTCACAAGTTTGATGG+TGG | + | chr8_1:13341129-13341148 | None:intergenic | 40.0% | |
| TACCCAAGAGCCTTTAGTTA+AGG | - | chr8_1:13341283-13341302 | Msa1179750:intron | 40.0% | |
| ! | TGTTTGGTGATTTCGGTTTG+TGG | - | chr8_1:13341393-13341412 | Msa1179750:intron | 40.0% |
| !! | ATTTCGGTTTGTGGTTTGGT+TGG | - | chr8_1:13341402-13341421 | Msa1179750:intron | 40.0% |
| ! | CTTGGTGTAAATTGCACACA+AGG | - | chr8_1:13341550-13341569 | Msa1179750:intron | 40.0% |
| GAACGCTTATTTGACAACAC+TGG | + | chr8_1:13342340-13342359 | None:intergenic | 40.0% | |
| TCATACTGAACTAGAGAAGG+TGG | - | chr8_1:13342691-13342710 | Msa1179750:intron | 40.0% | |
| GTAGACAATACTTCGTAAGG+CGG | - | chr8_1:13342997-13343016 | Msa1179750:intron | 40.0% | |
| GTGTGAGAGAGACATACTTA+TGG | - | chr8_1:13343043-13343062 | Msa1179750:intron | 40.0% | |
| ATGGGTGGAACAAGAAATTG+GGG | - | chr8_1:13343062-13343081 | Msa1179750:intron | 40.0% | |
| TCTCTCTTAACCTAGATTGG+AGG | - | chr8_1:13343100-13343119 | Msa1179750:intron | 40.0% | |
| CTCTCTTAACCTAGATTGGA+GGG | - | chr8_1:13343101-13343120 | Msa1179750:intron | 40.0% | |
| ! | CAAACGATGGGAGACTTTTA+AGG | + | chr8_1:13343143-13343162 | None:intergenic | 40.0% |
| CTTAAAAGTCTCCCATCGTT+TGG | - | chr8_1:13343141-13343160 | Msa1179750:intron | 40.0% | |
| AGTGTAAGCCCTTCAAAGTT+TGG | + | chr8_1:13343239-13343258 | None:intergenic | 40.0% | |
| ! | AAGTCCAAGTACTTTTCCCT+GGG | - | chr8_1:13343328-13343347 | Msa1179750:intron | 40.0% |
| TCCCAATACCCAAACACATA+CGG | + | chr8_1:13343376-13343395 | None:intergenic | 40.0% | |
| !! | TAGTTTTTGCTGCTTGCTTC+AGG | - | chr8_1:13343443-13343462 | Msa1179750:intron | 40.0% |
| GGATCCAAAGATAACTCAGA+TGG | - | chr8_1:13343721-13343740 | Msa1179750:intron | 40.0% | |
| GACTCCATCTGAGTTATCTT+TGG | + | chr8_1:13343728-13343747 | None:intergenic | 40.0% | |
| ! | GGTTTAAAATGCACCAATGG+TGG | - | chr8_1:13343822-13343841 | Msa1179750:intron | 40.0% |
| GGTCAAAATGGCAACTTTGA+TGG | + | chr8_1:13343940-13343959 | None:intergenic | 40.0% | |
| GCCAACAATTTGACTAACTC+AGG | - | chr8_1:13344101-13344120 | Msa1179750:intron | 40.0% | |
| TATTTGCTTCAGAACTCCCT+TGG | + | chr8_1:13344438-13344457 | None:intergenic | 40.0% | |
| !! | AAGGGAGTTCTGAAGCAAAT+AGG | - | chr8_1:13344437-13344456 | Msa1179750:intron | 40.0% |
| ATTGCGAACTGAGGAAATTG+AGG | + | chr8_1:13344532-13344551 | None:intergenic | 40.0% | |
| AAAGCAGCAGAGAATGAAGA+TGG | + | chr8_1:13344726-13344745 | None:intergenic | 40.0% | |
| !!! | TCTTCATTCTCTGCTGCTTT+TGG | - | chr8_1:13344726-13344745 | Msa1179750:intron | 40.0% |
| !! | CTCAGCTTTATGCAGGATTT+TGG | + | chr8_1:13344780-13344799 | None:intergenic | 40.0% |
| AAACTTCTTGCTGCTGAAGA+TGG | - | chr8_1:13344846-13344865 | Msa1179750:CDS | 40.0% | |
| GATTGCAATAGCTTCTTCTG+AGG | + | chr8_1:13344891-13344910 | None:intergenic | 40.0% | |
| ! | CTAACCCTTTTCTGATGTTC+TGG | + | chr8_1:13344984-13345003 | None:intergenic | 40.0% |
| CAGAACATCAGAAAAGGGTT+AGG | - | chr8_1:13344982-13345001 | Msa1179750:intron | 40.0% | |
| AATTCACCTCATGGACATCA+AGG | + | chr8_1:13345009-13345028 | None:intergenic | 40.0% | |
| GCAAAAGGGAAAGGAGATAT+TGG | - | chr8_1:13345086-13345105 | Msa1179750:intron | 40.0% | |
| TGTTGCCTCAGGTTTGCAAT+TGG | - | chr8_1:13340963-13340982 | Msa1179750:three_prime_UTR | 45.0% | |
| AGCTTGATCTTCCTTGGTTG+TGG | + | chr8_1:13341028-13341047 | None:intergenic | 45.0% | |
| TGACAATACCCTTGCAGACA+CGG | + | chr8_1:13341004-13341023 | None:intergenic | 45.0% | |
| AGCTTGATCTTCCTTGGTTG+TGG | + | chr8_1:13341028-13341047 | None:intergenic | 45.0% | |
| ! | GGTGATTTCGGTTTGTGGTT+TGG | - | chr8_1:13341398-13341417 | Msa1179750:intron | 45.0% |
| ! | CATATATCGATTGGGAGTCG+AGG | - | chr8_1:13342886-13342905 | Msa1179750:intron | 45.0% |
| !! | AAAGAGGTCTCGTTGGTTTG+AGG | + | chr8_1:13342941-13342960 | None:intergenic | 45.0% |
| GAGAGAGACATACTTATGGG+TGG | - | chr8_1:13343047-13343066 | Msa1179750:intron | 45.0% | |
| AATACACACACCGCATTTCG+AGG | + | chr8_1:13343273-13343292 | None:intergenic | 45.0% | |
| ! | GAAGTCCAAGTACTTTTCCC+TGG | - | chr8_1:13343327-13343346 | Msa1179750:intron | 45.0% |
| ! | AGTCCAAGTACTTTTCCCTG+GGG | - | chr8_1:13343329-13343348 | Msa1179750:intron | 45.0% |
| TGCTACAGCCGTATGTGTTT+GGG | - | chr8_1:13343365-13343384 | Msa1179750:intron | 45.0% | |
| AGCCGTATGTGTTTGGGTAT+TGG | - | chr8_1:13343371-13343390 | Msa1179750:intron | 45.0% | |
| GCCGTATGTGTTTGGGTATT+GGG | - | chr8_1:13343372-13343391 | Msa1179750:intron | 45.0% | |
| GCTCGGTCAACTATATCTGA+TGG | - | chr8_1:13343700-13343719 | Msa1179750:intron | 45.0% | |
| ! | AAACAATGGCCTTGAGAGCA+GGG | + | chr8_1:13343750-13343769 | None:intergenic | 45.0% |
| ! | AAAACAATGGCCTTGAGAGC+AGG | + | chr8_1:13343751-13343770 | None:intergenic | 45.0% |
| ! | TGATGGATAGCAGGGAGTTA+AGG | + | chr8_1:13343923-13343942 | None:intergenic | 45.0% |
| ! | GGCAACTTTGATGGATAGCA+GGG | + | chr8_1:13343931-13343950 | None:intergenic | 45.0% |
| ! | TGGCAACTTTGATGGATAGC+AGG | + | chr8_1:13343932-13343951 | None:intergenic | 45.0% |
| GCACGAACACATGTACAACA+TGG | - | chr8_1:13344348-13344367 | Msa1179750:intron | 45.0% | |
| ACACTCATCATTGCGAACTG+AGG | + | chr8_1:13344541-13344560 | None:intergenic | 45.0% | |
| GCTGAGGAAATAGAGCAAAC+TGG | - | chr8_1:13344660-13344679 | Msa1179750:CDS | 45.0% | |
| GATCAGAGAAAATGGTCAGC+TGG | + | chr8_1:13344704-13344723 | None:intergenic | 45.0% | |
| ! | AGGTGTTCTCAGCTTTATGC+AGG | + | chr8_1:13344787-13344806 | None:intergenic | 45.0% |
| AAGCTGAGAACACCTTATGG+AGG | - | chr8_1:13344792-13344811 | Msa1179750:intron | 45.0% | |
| !!! | TTCTGGCTTTTTGGCTGTAG+GGG | + | chr8_1:13344967-13344986 | None:intergenic | 45.0% |
| !!! | GTTCTGGCTTTTTGGCTGTA+GGG | + | chr8_1:13344968-13344987 | None:intergenic | 45.0% |
| !!! | TGTTCTGGCTTTTTGGCTGT+AGG | + | chr8_1:13344969-13344988 | None:intergenic | 45.0% |
| TTAGGACCTTGATGTCCATG+AGG | - | chr8_1:13345000-13345019 | Msa1179750:intron | 45.0% | |
| ! | GGTTCCAAAAGCAGAGTACT+TGG | - | chr8_1:13345141-13345160 | Msa1179750:intron | 45.0% |
| GGTATTGTCAGCCACAACCA+AGG | - | chr8_1:13341014-13341033 | Msa1179750:CDS | 50.0% | |
| TTGCAGACACGGTTTGATGG+TGG | + | chr8_1:13341061-13341080 | None:intergenic | 50.0% | |
| ACCATCAAACCGTGTCTGCA+AGG | - | chr8_1:13341060-13341079 | Msa1179750:CDS | 50.0% | |
| CCATCAAACCGTGTCTGCAA+GGG | - | chr8_1:13341061-13341080 | Msa1179750:CDS | 50.0% | |
| GGTATTGTCAGCCACAACCA+AGG | - | chr8_1:13341014-13341033 | Msa1179750:CDS | 50.0% | |
| TTGGAGAAAGCCGATGCAAG+TGG | - | chr8_1:13341185-13341204 | Msa1179750:CDS | 50.0% | |
| CTGCAGACATACAACCCAAG+AGG | + | chr8_1:13341324-13341343 | None:intergenic | 50.0% | |
| GAACAGTTGCCCTCCAATCT+AGG | + | chr8_1:13343113-13343132 | None:intergenic | 50.0% | |
| ! | GTCCAAGTACTTTTCCCTGG+GGG | - | chr8_1:13343330-13343349 | Msa1179750:intron | 50.0% |
| ! | AAGTACTTTTCCCTGGGGGT+GGG | - | chr8_1:13343334-13343353 | Msa1179750:intron | 50.0% |
| GTGCTACAGCCGTATGTGTT+TGG | - | chr8_1:13343364-13343383 | Msa1179750:intron | 50.0% | |
| ACGCCAAAGCAGTGTTAGCT+CGG | - | chr8_1:13343683-13343702 | Msa1179750:intron | 50.0% | |
| TGACCGAGCTAACACTGCTT+TGG | + | chr8_1:13343689-13343708 | None:intergenic | 50.0% | |
| GCGCGTTCATGTGGGAATAT+AGG | + | chr8_1:13343790-13343809 | None:intergenic | 50.0% | |
| AACTCAGGTCTACCAGAACC+AGG | - | chr8_1:13344116-13344135 | Msa1179750:intron | 50.0% | |
| GTGTTCAGGCGATTGAGAGA+AGG | - | chr8_1:13344622-13344641 | Msa1179750:CDS | 50.0% | |
| TTCAGGCGATTGAGAGAAGG+AGG | - | chr8_1:13344625-13344644 | Msa1179750:CDS | 50.0% | |
| TCAGGCGATTGAGAGAAGGA+GGG | - | chr8_1:13344626-13344645 | Msa1179750:CDS | 50.0% | |
| GTCAGCTGGTTAGCATGAAC+TGG | + | chr8_1:13344690-13344709 | None:intergenic | 50.0% | |
| ! | AAGGGAGCACGTGTCTGCAA+GGG | - | chr8_1:13340993-13341012 | Msa1179750:exon | 55.0% |
| CCCTTGCAGACACGGTTTGA+TGG | + | chr8_1:13341064-13341083 | None:intergenic | 55.0% | |
| CAAGGAAATCAAGGCGGCGA+GGG | - | chr8_1:13341158-13341177 | Msa1179750:CDS | 55.0% | |
| ! | CTCCCATCGTTTGGGATCAG+AGG | - | chr8_1:13343150-13343169 | Msa1179750:intron | 55.0% |
| GGCCTCTGATCCCAAACGAT+GGG | + | chr8_1:13343155-13343174 | None:intergenic | 55.0% | |
| TGGCCTCTGATCCCAAACGA+TGG | + | chr8_1:13343156-13343175 | None:intergenic | 55.0% | |
| !! | CACCCCCAGGGAAAAGTACT+TGG | + | chr8_1:13343335-13343354 | None:intergenic | 55.0% |
| ! | CAAGTACTTTTCCCTGGGGG+TGG | - | chr8_1:13343333-13343352 | Msa1179750:intron | 55.0% |
| AGATGGAGTCCCTGCTCTCA+AGG | - | chr8_1:13343738-13343757 | Msa1179750:intron | 55.0% | |
| GAATGCGTGCGCGTTCATGT+GGG | + | chr8_1:13343798-13343817 | None:intergenic | 55.0% | |
| TGAATGCGTGCGCGTTCATG+TGG | + | chr8_1:13343799-13343818 | None:intergenic | 55.0% | |
| TGAACGCGCACGCATTCAGA+AGG | - | chr8_1:13343801-13343820 | Msa1179750:intron | 55.0% | |
| TGAGAGAAGGAGGGAGAGAC+TGG | - | chr8_1:13344635-13344654 | Msa1179750:CDS | 55.0% | |
| GAGAGAAGGAGGGAGAGACT+GGG | - | chr8_1:13344636-13344655 | Msa1179750:CDS | 55.0% | |
| ! | CAAGGGAGCACGTGTCTGCA+AGG | - | chr8_1:13340992-13341011 | Msa1179750:exon | 60.0% |
| GCAAGGAAATCAAGGCGGCG+AGG | - | chr8_1:13341157-13341176 | Msa1179750:CDS | 60.0% | |
| ! | TCAAGGCGGCGAGGGTACAT+TGG | - | chr8_1:13341166-13341185 | Msa1179750:CDS | 60.0% |
| TTCCCTGGGGGTGGGCATGA+TGG | - | chr8_1:13343342-13343361 | Msa1179750:intron | 65.0% | |
| CACCATCATGCCCACCCCCA+GGG | + | chr8_1:13343347-13343366 | None:intergenic | 65.0% | |
| GAGGGAGAGACTGGGAGCTG+AGG | - | chr8_1:13344644-13344663 | Msa1179750:CDS | 65.0% | |
| GCACCATCATGCCCACCCCC+AGG | + | chr8_1:13343348-13343367 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 13340555 | 13345326 | 13340555 | ID=Msa1179750;Name=Msa1179750 |
| chr8_1 | mRNA | 13340555 | 13345326 | 13340555 | ID=Msa1179750-mRNA-1;Parent=Msa1179750;Name=Msa1179750-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|0.16|0.28|0.85|1|1|7|454|287 |
| chr8_1 | exon | 13340555 | 13341251 | 13340555 | ID=Msa1179750-mRNA-1:exon:4856;Parent=Msa1179750-mRNA-1 |
| chr8_1 | exon | 13342059 | 13342201 | 13342059 | ID=Msa1179750-mRNA-1:exon:4855;Parent=Msa1179750-mRNA-1 |
| chr8_1 | exon | 13342295 | 13342416 | 13342295 | ID=Msa1179750-mRNA-1:exon:4854;Parent=Msa1179750-mRNA-1 |
| chr8_1 | exon | 13343984 | 13344087 | 13343984 | ID=Msa1179750-mRNA-1:exon:4853;Parent=Msa1179750-mRNA-1 |
| chr8_1 | exon | 13344577 | 13344723 | 13344577 | ID=Msa1179750-mRNA-1:exon:4852;Parent=Msa1179750-mRNA-1 |
| chr8_1 | exon | 13344809 | 13344907 | 13344809 | ID=Msa1179750-mRNA-1:exon:4851;Parent=Msa1179750-mRNA-1 |
| chr8_1 | exon | 13345321 | 13345326 | 13345321 | ID=Msa1179750-mRNA-1:exon:4850;Parent=Msa1179750-mRNA-1 |
| chr8_1 | CDS | 13345321 | 13345326 | 13345321 | ID=Msa1179750-mRNA-1:cds;Parent=Msa1179750-mRNA-1 |
| chr8_1 | CDS | 13344809 | 13344907 | 13344809 | ID=Msa1179750-mRNA-1:cds;Parent=Msa1179750-mRNA-1 |
| chr8_1 | CDS | 13344577 | 13344723 | 13344577 | ID=Msa1179750-mRNA-1:cds;Parent=Msa1179750-mRNA-1 |
| chr8_1 | CDS | 13343984 | 13344087 | 13343984 | ID=Msa1179750-mRNA-1:cds;Parent=Msa1179750-mRNA-1 |
| chr8_1 | CDS | 13342295 | 13342416 | 13342295 | ID=Msa1179750-mRNA-1:cds;Parent=Msa1179750-mRNA-1 |
| chr8_1 | CDS | 13342059 | 13342201 | 13342059 | ID=Msa1179750-mRNA-1:cds;Parent=Msa1179750-mRNA-1 |
| chr8_1 | CDS | 13341009 | 13341251 | 13341009 | ID=Msa1179750-mRNA-1:cds;Parent=Msa1179750-mRNA-1 |
| chr8_1 | three_prime_UTR | 13340555 | 13341008 | 13340555 | ID=Msa1179750-mRNA-1:three_prime_utr;Parent=Msa1179750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
