AlfalfaGEDB | Msa1180160

M. sativa cultivar zhongmu-4 / Msa1180160

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1180160	Msa1274980	0.870285	1.637498e-66	-8.615850e-47
Msa1180160	Msa1312950	0.888858	4.065574e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 35 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTGCACTACAGGGTCAC+AGG	0.463707	8_1:-13941421	None:intergenic
AATTCTGGTGGTGATAACAC+TGG	0.692964	8_1:-13942648	None:intergenic
AATTTACCAGCAGCCATTGC+AGG	0.432252	8_1:-13941471	None:intergenic
ACCCTGTAGTGCAAGTTCTG+AGG	0.686102	8_1:+13941427	Msa1180160:CDS
ACTTGCACTACAGGGTCACA+GGG	0.655163	8_1:-13941420	None:intergenic
AGCAAAGGTGTTTCATCTAA+CGG	0.514730	8_1:+13943962	Msa1180160:CDS
AGGGATGAGTTGTCTACTTT+TGG	0.272750	8_1:+13942601	Msa1180160:CDS
ATGATTTGATTACAGTGTGA+AGG	0.537265	8_1:+13945359	Msa1180160:intron
ATTGAAGCCATTAAGAGCAA+AGG	0.604940	8_1:+13943947	Msa1180160:CDS
ATTGATTTCATTAACTTTAA+AGG	0.177612	8_1:-13945592	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTTTATGCACGATTATTA+AGG	+	chr8_1:13941594-13941613	Msa1180160:intron	30.0%
GGATGGCATTAAAATCATTA+GGG	-	chr8_1:13942077-13942096	None:intergenic	30.0%
GTAAGCGTGCATATATATTA+TGG	+	chr8_1:13942473-13942492	Msa1180160:intron	30.0%
GTCTTCTGATTAACTATTTC+AGG	+	chr8_1:13942575-13942594	Msa1180160:intron	30.0%
AAAGATGATTAAAGGGCAAA+AGG	-	chr8_1:13942864-13942883	None:intergenic	30.0%
AGTTGTGTAAACCTATGAAT+TGG	+	chr8_1:13942982-13943001	Msa1180160:intron	30.0%
TACCTACAAAGCTACAATAT+AGG	-	chr8_1:13943312-13943331	None:intergenic	30.0%
AAATTAACATCCACTTGCAA+TGG	-	chr8_1:13943383-13943402	None:intergenic	30.0%
ATTTGAAAATGTTCAACGCA+GGG	+	chr8_1:13943429-13943448	Msa1180160:intron	30.0%
AAAAAATCCCACTGTTCAAA+CGG	-	chr8_1:13943534-13943553	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	13941395	13945682	13941395	ID=Msa1180160;Name=Msa1180160
chr8_1	mRNA	13941395	13945682	13941395	ID=Msa1180160-mRNA-1;Parent=Msa1180160;Name=Msa1180160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=22\|0.66\|0.75\|1\|1\|1\|4\|188\|120
chr8_1	exon	13941395	13941486	13941395	ID=Msa1180160-mRNA-1:exon:5109;Parent=Msa1180160-mRNA-1
chr8_1	exon	13942597	13942679	13942597	ID=Msa1180160-mRNA-1:exon:5110;Parent=Msa1180160-mRNA-1
chr8_1	exon	13943917	13944005	13943917	ID=Msa1180160-mRNA-1:exon:5111;Parent=Msa1180160-mRNA-1
chr8_1	exon	13945374	13945682	13945374	ID=Msa1180160-mRNA-1:exon:5112;Parent=Msa1180160-mRNA-1
chr8_1	five_prime_UTR	13941395	13941416	13941395	ID=Msa1180160-mRNA-1:five_prime_utr;Parent=Msa1180160-mRNA-1
chr8_1	CDS	13941417	13941486	13941417	ID=Msa1180160-mRNA-1:cds;Parent=Msa1180160-mRNA-1
chr8_1	CDS	13942597	13942679	13942597	ID=Msa1180160-mRNA-1:cds;Parent=Msa1180160-mRNA-1
chr8_1	CDS	13943917	13944005	13943917	ID=Msa1180160-mRNA-1:cds;Parent=Msa1180160-mRNA-1
chr8_1	CDS	13945374	13945494	13945374	ID=Msa1180160-mRNA-1:cds;Parent=Msa1180160-mRNA-1
chr8_1	three_prime_UTR	13945495	13945682	13945495	ID=Msa1180160-mRNA-1:three_prime_utr;Parent=Msa1180160-mRNA-1

Gene Sequence	>Msa1180160 ATGCCCTGTGACCCTGTAGTGCAAGTTCTGAGGAAAGCTAATGTTCTCGTTTCTCCTGCAATGGCTGCTGGTGTAGGGATGAGTTGTCTACTTTTGGAATATTTTTATGGTTCCTTCCCAACCAGTGTTATCACCACCAGAATTGATTGTGAGGACAAATGTTTCGAAGTTGCAAAATGCATGATTGAAGCCATTAAGAGCAAAGGTGTTTCATCTAACGGGGCTGCTGAATTTTCTTTGTGTGTGAAGGTAAACCCTTGTTTTAGGGATTATTACCATTTTACTATGGAGTGCCAAGATTACTCACATGACTCTAGTGTGAAGGCTGGTATTTTGATGCAATCAGTCCAAAGATGCAGGTAA
Protein sequence	>Msa1180160 MPCDPVVQVLRKANVLVSPAMAAGVGMSCLLLEYFYGSFPTSVITTRIDCEDKCFEVAKCMIEAIKSKGVSSNGAAEFSLCVKVNPCFRDYYHFTMECQDYSHDSSVKAGILMQSVQRCR*