Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0766630 | Msa1274980 | 0.807171 | 5.758361e-50 | -8.615850e-47 |
| Msa1274980 | Msa1312950 | 0.871635 | 5.879126e-67 | -8.615850e-47 |
| Msa1180160 | Msa1274980 | 0.870285 | 1.637498e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACACCTTTGCTCTTAA+TGG | 0.113419 | 8_3:+8846017 | None:intergenic |
| ATTGATTTCATTAACTTTAA+AGG | 0.177612 | 8_3:+8844715 | None:intergenic |
| CCATGTTTATAAATATAATT+TGG | 0.195747 | 8_3:-8844687 | Msa1274980:three_prime_UTR |
| TCGAGTGTTACCTGCATCTT+TGG | 0.257314 | 8_3:+8844828 | None:intergenic |
| AGGGATGAGTTGTCTACTTT+TGG | 0.272750 | 8_3:-8847516 | Msa1274980:CDS |
| CTTGGCACTCCATAGTAAAA+TGG | 0.313706 | 8_3:+8844900 | None:intergenic |
| TCTCACCTCACAATCAATTC+TGG | 0.358267 | 8_3:+8847454 | None:intergenic |
| GCAAAGGTGTTTCATCTAAC+GGG | 0.388326 | 8_3:-8846008 | Msa1274980:CDS |
| TTCCTCAGAACTTGCACTAC+AGG | 0.406661 | 8_3:+8848448 | None:intergenic |
| TAGAGTCATGTGAGTAATCT+TGG | 0.418763 | 8_3:+8844882 | None:intergenic |
| AATTTACCAGCAGCCATTGC+AGG | 0.432252 | 8_3:+8848406 | None:intergenic |
| AACTTGCACTACAGGGTCAC+AGG | 0.463707 | 8_3:+8848456 | None:intergenic |
| GTTTCTCCTGCAATGGCTGC+TGG | 0.473825 | 8_3:-8848412 | Msa1274980:intron |
| CCAAATTATATTTATAAACA+TGG | 0.485194 | 8_3:+8844687 | None:intergenic |
| AGCAAAGGTGTTTCATCTAA+CGG | 0.514730 | 8_3:-8846009 | Msa1274980:CDS |
| GATTAACTATTTCAGGTGTA+GGG | 0.516528 | 8_3:-8847535 | Msa1274980:intron |
| ATGATTTGATTACAGTGTGA+AGG | 0.537265 | 8_3:-8844948 | Msa1274980:intron |
| TGCAATCAGTCCAAAGATGC+AGG | 0.540241 | 8_3:-8844838 | Msa1274980:CDS |
| TGGTGGTGATAACACTGGTT+GGG | 0.555703 | 8_3:+8847474 | None:intergenic |
| GGTAATAATCCCTAAAACAA+GGG | 0.558384 | 8_3:+8844921 | None:intergenic |
| TGGTAATAATCCCTAAAACA+AGG | 0.569912 | 8_3:+8844920 | None:intergenic |
| TCCTCAGAACTTGCACTACA+GGG | 0.584365 | 8_3:+8848449 | None:intergenic |
| ATTGAAGCCATTAAGAGCAA+AGG | 0.590976 | 8_3:-8846024 | Msa1274980:CDS |
| CTCACATGACTCTAGTGTGA+AGG | 0.613928 | 8_3:-8844873 | Msa1274980:CDS |
| CTGGTGGTGATAACACTGGT+TGG | 0.618340 | 8_3:+8847473 | None:intergenic |
| CACCTCACAATCAATTCTGG+TGG | 0.620720 | 8_3:+8847457 | None:intergenic |
| GGTGATAACACTGGTTGGGA+AGG | 0.621015 | 8_3:+8847478 | None:intergenic |
| CATGACTCTAGTGTGAAGGC+TGG | 0.622131 | 8_3:-8844869 | Msa1274980:CDS |
| CACCACCAGAATTGATTGTG+AGG | 0.625640 | 8_3:-8847459 | Msa1274980:intron |
| CAAAGGTGTTTCATCTAACG+GGG | 0.644795 | 8_3:-8846007 | Msa1274980:CDS |
| ACTTGCACTACAGGGTCACA+GGG | 0.655163 | 8_3:+8848457 | None:intergenic |
| ACCCTGTAGTGCAAGTTCTG+AGG | 0.686102 | 8_3:-8848450 | Msa1274980:CDS |
| AATTCTGGTGGTGATAACAC+TGG | 0.692964 | 8_3:+8847469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATACAAAATATAATAA+GGG | + | chr8_3:8845088-8845107 | None:intergenic | 10.0% |
| !! | AATAATTAAGTAATTCAAAT+AGG | + | chr8_3:8845128-8845147 | None:intergenic | 10.0% |
| !!! | AGTTTAAATTTTATTTTGAA+AGG | + | chr8_3:8845875-8845894 | None:intergenic | 10.0% |
| !!! | TTTAAATGAAACAAATTTTT+TGG | - | chr8_3:8846813-8846832 | Msa1274980:intron | 10.0% |
| !! | TATAATAATATAAAATTGCT+TGG | - | chr8_3:8847484-8847503 | Msa1274980:CDS | 10.0% |
| !!! | TTAAAATACTGCATTATTTT+AGG | + | chr8_3:8844735-8844754 | None:intergenic | 15.0% |
| !!! | AAAAGAAACAATTTAAGATA+GGG | + | chr8_3:8844956-8844975 | None:intergenic | 15.0% |
| !! | GAATGATACAAAATATAATA+AGG | + | chr8_3:8845089-8845108 | None:intergenic | 15.0% |
| !!! | CAAATATGAAATTTCATTTT+TGG | - | chr8_3:8845384-8845403 | Msa1274980:intron | 15.0% |
| !! | GTAAATATAGTTTAACAAAA+AGG | + | chr8_3:8845789-8845808 | None:intergenic | 15.0% |
| !! | TATTCAATTAATGATGTATA+TGG | - | chr8_3:8846295-8846314 | Msa1274980:intron | 15.0% |
| !!! | ATTATTTTGATTTGTACATA+TGG | + | chr8_3:8846617-8846636 | None:intergenic | 15.0% |
| !!! | ATTGATTTCATTAACTTTAA+AGG | + | chr8_3:8848395-8848414 | None:intergenic | 15.0% |
| !! | CCAAATTATATTTATAAACA+TGG | + | chr8_3:8848423-8848442 | None:intergenic | 15.0% |
| !! | CCATGTTTATAAATATAATT+TGG | - | chr8_3:8848420-8848439 | Msa1274980:CDS | 15.0% |
| !! | GATAAAAATAATATGTTCCT+TGG | - | chr8_3:8844781-8844800 | Msa1274980:three_prime_UTR | 20.0% |
| !!! | GAAAAGAAACAATTTAAGAT+AGG | + | chr8_3:8844957-8844976 | None:intergenic | 20.0% |
| !! | TCATATTCTTTGTAAAAACT+AGG | + | chr8_3:8845037-8845056 | None:intergenic | 20.0% |
| !! | ATACAAAATATAATAAGGGA+TGG | + | chr8_3:8845084-8845103 | None:intergenic | 20.0% |
| !! | GAATTACTTAATTATTGACA+TGG | - | chr8_3:8845132-8845151 | Msa1274980:intron | 20.0% |
| !!! | TACAAAAACATTTTATAGCA+AGG | - | chr8_3:8845217-8845236 | Msa1274980:intron | 20.0% |
| !! | ATATTATGGCTTAAAATCAT+AGG | - | chr8_3:8845477-8845496 | Msa1274980:intron | 20.0% |
| !!! | CTACTTTTGGAATATTTTTA+TGG | - | chr8_3:8845604-8845623 | Msa1274980:intron | 20.0% |
| !! | AGATAATTCAAGAAAAATGT+TGG | - | chr8_3:8845705-8845724 | Msa1274980:intron | 20.0% |
| !!! | AAATCAACAAGTTTTGTTAA+TGG | + | chr8_3:8846049-8846068 | None:intergenic | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | + | chr8_3:8846266-8846285 | None:intergenic | 20.0% |
| !!! | ATAAGCAAATTTCACTTTTT+AGG | + | chr8_3:8846359-8846378 | None:intergenic | 20.0% |
| !!! | AGTGAAATTTGCTTATATTT+AGG | - | chr8_3:8846363-8846382 | Msa1274980:intron | 20.0% |
| !! | AAGAAAACAATTTGTAAAAG+CGG | + | chr8_3:8846958-8846977 | None:intergenic | 20.0% |
| !! | AATATACAAGTAAACCTATA+TGG | + | chr8_3:8847213-8847232 | None:intergenic | 20.0% |
| !! | TATAGGTTTACTTGTATATT+AGG | - | chr8_3:8847213-8847232 | Msa1274980:intron | 20.0% |
| !!! | TATATTAGGTTTGTCTTATT+TGG | + | chr8_3:8847343-8847362 | None:intergenic | 20.0% |
| !! | ATATTTCAACTATACAGTAA+AGG | + | chr8_3:8847393-8847412 | None:intergenic | 20.0% |
| !! | TTATAGTTAGTGAATTTGAA+TGG | - | chr8_3:8847592-8847611 | Msa1274980:intron | 20.0% |
| !! | TTCAACATTAAGATTGAATA+TGG | + | chr8_3:8847634-8847653 | None:intergenic | 20.0% |
| !! | TTCAAAATCTATTTACCTTT+CGG | - | chr8_3:8847721-8847740 | Msa1274980:intron | 20.0% |
| !! | TTTATTACCAAAATGATCAA+TGG | + | chr8_3:8847930-8847949 | None:intergenic | 20.0% |
| !! | TTGAATATAACCAATAAGAA+CGG | - | chr8_3:8848068-8848087 | Msa1274980:intron | 20.0% |
| !!! | TTTTTCAAACAAAGATTTGA+AGG | + | chr8_3:8848348-8848367 | None:intergenic | 20.0% |
| ! | GGATGGAATTAAAATCATTA+GGG | + | chr8_3:8845067-8845086 | None:intergenic | 25.0% |
| !!! | ACTTTTATAGCATTGATTGA+TGG | - | chr8_3:8845312-8845331 | Msa1274980:intron | 25.0% |
| !!! | TTTCATTTTTGGTGATTGAT+TGG | - | chr8_3:8845395-8845414 | Msa1274980:intron | 25.0% |
| ! | TATATTGCCAACATGATAAT+TGG | + | chr8_3:8845680-8845699 | None:intergenic | 25.0% |
| ! | CATGTTTATTCAAGAATTCA+GGG | + | chr8_3:8845762-8845781 | None:intergenic | 25.0% |
| ! | TCATGTTTATTCAAGAATTC+AGG | + | chr8_3:8845763-8845782 | None:intergenic | 25.0% |
| ! | GTTAAACTATATTTACACCT+TGG | - | chr8_3:8845793-8845812 | Msa1274980:intron | 25.0% |
| ! | TGAAAGGAAAGATGATTAAA+GGG | + | chr8_3:8845859-8845878 | None:intergenic | 25.0% |
| ! | TTGAAAGGAAAGATGATTAA+AGG | + | chr8_3:8845860-8845879 | None:intergenic | 25.0% |
| !! | GACTAATTGTTGTATTCTTT+TGG | - | chr8_3:8845900-8845919 | Msa1274980:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+TGG | + | chr8_3:8846368-8846387 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr8_3:8846334-8846353 | None:intergenic | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr8_3:8846368-8846387 | Msa1274980:intron | 25.0% |
| ! | ATAAGACAAACTTGTATAGT+AGG | - | chr8_3:8846418-8846437 | Msa1274980:intron | 25.0% |
| !!! | TAGCTTTGTAGGTATTATAT+GGG | - | chr8_3:8846457-8846476 | Msa1274980:intron | 25.0% |
| !! | GTTGAACATTTTCAAATGTA+TGG | + | chr8_3:8846569-8846588 | None:intergenic | 25.0% |
| !! | TGGTTAAGATTATTGATTGT+TGG | - | chr8_3:8846698-8846717 | Msa1274980:intron | 25.0% |
| !! | ATTATTGATTGTTGGAAGAT+GGG | - | chr8_3:8846706-8846725 | Msa1274980:intron | 25.0% |
| ! | AAACAATTGAGACATTAAAG+AGG | + | chr8_3:8846773-8846792 | None:intergenic | 25.0% |
| ! | AAATCAACACATTCCTATTT+CGG | + | chr8_3:8846867-8846886 | None:intergenic | 25.0% |
| !!! | AAATAGGAATGTGTTGATTT+TGG | - | chr8_3:8846867-8846886 | Msa1274980:intron | 25.0% |
| ! | AGAAAACAATTTGTAAAAGC+GGG | + | chr8_3:8846957-8846976 | None:intergenic | 25.0% |
| ! | TTTCACTAAGCATACTTATT+TGG | - | chr8_3:8847147-8847166 | Msa1274980:intron | 25.0% |
| !!! | GTCTTATTTGGTTTCATTTT+GGG | + | chr8_3:8847331-8847350 | None:intergenic | 25.0% |
| !!! | TGTCTTATTTGGTTTCATTT+TGG | + | chr8_3:8847332-8847351 | None:intergenic | 25.0% |
| ! | CATGCATATTGCAATATATT+AGG | + | chr8_3:8847357-8847376 | None:intergenic | 25.0% |
| !! | CAGATTTTATGACTTTAGTT+AGG | + | chr8_3:8847427-8847446 | None:intergenic | 25.0% |
| !! | ATAGATTTTGAATAGACGTT+GGG | + | chr8_3:8847713-8847732 | None:intergenic | 25.0% |
| !! | AATAGATTTTGAATAGACGT+TGG | + | chr8_3:8847714-8847733 | None:intergenic | 25.0% |
| !! | GGATTATTACCATTTTACTA+TGG | - | chr8_3:8848198-8848217 | Msa1274980:intron | 25.0% |
| ! | GGATGATTCATTATTTTCGA+TGG | + | chr8_3:8844935-8844954 | None:intergenic | 30.0% |
| GGGATGGAATTAAAATCATT+AGG | + | chr8_3:8845068-8845087 | None:intergenic | 30.0% | |
| ! | CATTTTATAGCAAGGATAGA+TGG | - | chr8_3:8845225-8845244 | Msa1274980:intron | 30.0% |
| GTAAGCGTGCATATATATTA+TGG | - | chr8_3:8845463-8845482 | Msa1274980:intron | 30.0% | |
| GTCTTCTGATTAACTATTTC+AGG | - | chr8_3:8845565-8845584 | Msa1274980:intron | 30.0% | |
| ! | TGATTAACTATTTCAGGTGT+AGG | - | chr8_3:8845571-8845590 | Msa1274980:intron | 30.0% |
| ! | GATTAACTATTTCAGGTGTA+GGG | - | chr8_3:8845572-8845591 | Msa1274980:intron | 30.0% |
| ! | ATTTTTCTACAATCTGTCCA+AGG | + | chr8_3:8845813-8845832 | None:intergenic | 30.0% |
| AAAGATGATTAAAGGGCAAA+AGG | + | chr8_3:8845852-8845871 | None:intergenic | 30.0% | |
| AGTTGTGTAAACCTATGAAT+TGG | - | chr8_3:8845970-8845989 | Msa1274980:intron | 30.0% | |
| ! | CTTCTTTGTTTCCAATTCAT+AGG | + | chr8_3:8845984-8846003 | None:intergenic | 30.0% |
| ! | CATAAACAAGAGAGTATGAA+GGG | - | chr8_3:8846190-8846209 | Msa1274980:intron | 30.0% |
| GATGTATATGGTCCATAATA+TGG | - | chr8_3:8846307-8846326 | Msa1274980:intron | 30.0% | |
| ! | ATTTTTCTATATACTCCCTC+CGG | + | chr8_3:8846390-8846409 | None:intergenic | 30.0% |
| !! | AACCTATATTGTAGCTTTGT+AGG | - | chr8_3:8846446-8846465 | Msa1274980:intron | 30.0% |
| TACCTACAAAGCTACAATAT+AGG | + | chr8_3:8846451-8846470 | None:intergenic | 30.0% | |
| !! | GTAGCTTTGTAGGTATTATA+TGG | - | chr8_3:8846456-8846475 | Msa1274980:intron | 30.0% |
| ! | AGCTTTGTAGGTATTATATG+GGG | - | chr8_3:8846458-8846477 | Msa1274980:intron | 30.0% |
| AAATTAACATCCACTTGCAA+TGG | + | chr8_3:8846526-8846545 | None:intergenic | 30.0% | |
| TACATATGGAGTACATGTTA+TGG | + | chr8_3:8846603-8846622 | None:intergenic | 30.0% | |
| AAAAAATCCCACTGTTCAAA+CGG | + | chr8_3:8846670-8846689 | None:intergenic | 30.0% | |
| ! | GATTATTGATTGTTGGAAGA+TGG | - | chr8_3:8846705-8846724 | Msa1274980:intron | 30.0% |
| ! | TTATTGATTGTTGGAAGATG+GGG | - | chr8_3:8846707-8846726 | Msa1274980:intron | 30.0% |
| ATTAAAGAGGACACAATAGT+TGG | + | chr8_3:8846760-8846779 | None:intergenic | 30.0% | |
| TTCATTTAAACGTATCACAG+AGG | + | chr8_3:8846803-8846822 | None:intergenic | 30.0% | |
| !! | CAAAGTTTTATCACCGAAAT+AGG | - | chr8_3:8846851-8846870 | Msa1274980:intron | 30.0% |
| ! | TTGTTTTCTTTACTGTCATC+TGG | - | chr8_3:8846968-8846987 | Msa1274980:intron | 30.0% |
| ! | GAAATCTGGAATTTCATTTC+TGG | - | chr8_3:8847748-8847767 | Msa1274980:intron | 30.0% |
| TTGTTGCGAAATTTCTTCTA+AGG | - | chr8_3:8847791-8847810 | Msa1274980:intron | 30.0% | |
| CAATATGTGGCTTAAAATCA+TGG | - | chr8_3:8847833-8847852 | Msa1274980:intron | 30.0% | |
| ! | TCTCACCTTACAATCAATTT+TGG | + | chr8_3:8847906-8847925 | None:intergenic | 30.0% |
| ATATTAAAATCTTGCTGACG+TGG | - | chr8_3:8848011-8848030 | Msa1274980:intron | 30.0% | |
| TTTATTTCAGCCGTTCTTAT+TGG | + | chr8_3:8848081-8848100 | None:intergenic | 30.0% | |
| CACTGTAATCAAATCATTGA+AGG | + | chr8_3:8848156-8848175 | None:intergenic | 30.0% | |
| ATGATTTGATTACAGTGTGA+AGG | - | chr8_3:8848159-8848178 | Msa1274980:intron | 30.0% | |
| GGTAATAATCCCTAAAACAA+GGG | + | chr8_3:8848189-8848208 | None:intergenic | 30.0% | |
| TGGTAATAATCCCTAAAACA+AGG | + | chr8_3:8848190-8848209 | None:intergenic | 30.0% | |
| ! | AACCAGAGACTTTGAAAGAA+AGG | + | chr8_3:8844816-8844835 | None:intergenic | 35.0% |
| GTATCATTCCTTCCAAAAAG+TGG | - | chr8_3:8845100-8845119 | Msa1274980:intron | 35.0% | |
| !!! | TTCAAATAGGTGCCACTTTT+TGG | + | chr8_3:8845115-8845134 | None:intergenic | 35.0% |
| CGTAGTACAAAGAGCTAAAT+TGG | + | chr8_3:8845258-8845277 | None:intergenic | 35.0% | |
| GTGAGAACCAATTATCATGT+TGG | - | chr8_3:8845670-8845689 | Msa1274980:intron | 35.0% | |
| !! | AATGTTGGTTTGTTTGCTTC+AGG | - | chr8_3:8845720-8845739 | Msa1274980:intron | 35.0% |
| !! | TCTAACTTTGATGATGCATG+TGG | + | chr8_3:8846087-8846106 | None:intergenic | 35.0% |
| GAAGACAAATCTCAACATGA+AGG | - | chr8_3:8846124-8846143 | Msa1274980:intron | 35.0% | |
| ! | GCATAAACAAGAGAGTATGA+AGG | - | chr8_3:8846189-8846208 | Msa1274980:intron | 35.0% |
| ! | TTGCTTATATTTAGGACTGG+AGG | + | chr8_3:8846258-8846277 | None:intergenic | 35.0% |
| GATGTATGTGGTCCATATTA+TGG | + | chr8_3:8846322-8846341 | None:intergenic | 35.0% | |
| TTGTAGGTATTATATGGGGA+AGG | - | chr8_3:8846462-8846481 | Msa1274980:intron | 35.0% | |
| AATGACAAAACCATTGCAAG+TGG | - | chr8_3:8846513-8846532 | Msa1274980:intron | 35.0% | |
| CATTTGAAAATGTTCAACGC+AGG | - | chr8_3:8846571-8846590 | Msa1274980:intron | 35.0% | |
| TATGGAGTACATGTTATGGT+GGG | + | chr8_3:8846599-8846618 | None:intergenic | 35.0% | |
| ATATGGAGTACATGTTATGG+TGG | + | chr8_3:8846600-8846619 | None:intergenic | 35.0% | |
| AAAAATCCCACTGTTCAAAC+GGG | + | chr8_3:8846669-8846688 | None:intergenic | 35.0% | |
| TGGGGAATAATTCACTTGAT+TGG | - | chr8_3:8846725-8846744 | Msa1274980:intron | 35.0% | |
| AAACAATTTGTAAAAGCGGG+TGG | + | chr8_3:8846954-8846973 | None:intergenic | 35.0% | |
| ATTGAAGCCATTAAGAGCAA+AGG | - | chr8_3:8847083-8847102 | Msa1274980:intron | 35.0% | |
| TGAAACACCTTTGCTCTTAA+TGG | + | chr8_3:8847093-8847112 | None:intergenic | 35.0% | |
| !! | AGCAAAGGTGTTTCATCTAA+CGG | - | chr8_3:8847098-8847117 | Msa1274980:intron | 35.0% |
| AAGTGTCACACTATCACATA+AGG | + | chr8_3:8847457-8847476 | None:intergenic | 35.0% | |
| TATGTGATGCATGCAATATG+TGG | - | chr8_3:8847820-8847839 | Msa1274980:intron | 35.0% | |
| !!! | CAATTTTGGTGGTGATAAAC+TGG | + | chr8_3:8847892-8847911 | None:intergenic | 35.0% |
| CACCACCAAAATTGATTGTA+AGG | - | chr8_3:8847898-8847917 | Msa1274980:intron | 35.0% | |
| ! | CACCTTACAATCAATTTTGG+TGG | + | chr8_3:8847903-8847922 | None:intergenic | 35.0% |
| ! | GTGAGAACCATTGATCATTT+TGG | - | chr8_3:8847920-8847939 | Msa1274980:intron | 35.0% |
| !!! | TGAAGGTAAACCCTTGTTTT+AGG | - | chr8_3:8848176-8848195 | Msa1274980:intron | 35.0% |
| !!! | GAAGGTAAACCCTTGTTTTA+GGG | - | chr8_3:8848177-8848196 | Msa1274980:intron | 35.0% |
| TAGAGTCATGTGAGTAATCT+TGG | + | chr8_3:8848228-8848247 | None:intergenic | 35.0% | |
| ! | TTTTCTCGTTTCTCCTGCAA+TGG | - | chr8_3:8844688-8844707 | Msa1274980:three_prime_UTR | 40.0% |
| CTCCTTTCTTTCAAAGTCTC+TGG | - | chr8_3:8844811-8844830 | Msa1274980:three_prime_UTR | 40.0% | |
| !! | TAAGAGATGCTTCTAGAGCT+TGG | + | chr8_3:8844989-8845008 | None:intergenic | 40.0% |
| !!! | AATAGGTGCCACTTTTTGGA+AGG | + | chr8_3:8845111-8845130 | None:intergenic | 40.0% |
| ! | AGGGATGAGTTGTCTACTTT+TGG | - | chr8_3:8845591-8845610 | Msa1274980:intron | 40.0% |
| ! | AATTCTGGTGGTGATAACAC+TGG | + | chr8_3:8845641-8845660 | None:intergenic | 40.0% |
| TCTCACCTCACAATCAATTC+TGG | + | chr8_3:8845656-8845675 | None:intergenic | 40.0% | |
| ACTAACTCATGAGACTCTTG+AGG | + | chr8_3:8845953-8845972 | None:intergenic | 40.0% | |
| ! | TGATGATGCATGTGGTCTAT+TGG | + | chr8_3:8846079-8846098 | None:intergenic | 40.0% |
| GCATCATCAAAGTTAGAGCA+TGG | - | chr8_3:8846090-8846109 | Msa1274980:intron | 40.0% | |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr8_3:8846371-8846390 | Msa1274980:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr8_3:8846372-8846391 | Msa1274980:intron | 40.0% |
| AGGTATTATATGGGGAAGGA+AGG | - | chr8_3:8846466-8846485 | Msa1274980:intron | 40.0% | |
| AACTATTCCCGTTTGAACAG+TGG | - | chr8_3:8846659-8846678 | Msa1274980:intron | 40.0% | |
| ACTATTCCCGTTTGAACAGT+GGG | - | chr8_3:8846660-8846679 | Msa1274980:intron | 40.0% | |
| !!! | GTGGGATTTTTTTAGCACTG+TGG | - | chr8_3:8846678-8846697 | Msa1274980:intron | 40.0% |
| ! | ATTGTGTCATTCTCTGATGC+AGG | - | chr8_3:8847031-8847050 | Msa1274980:intron | 40.0% |
| !! | GCAAAGGTGTTTCATCTAAC+GGG | - | chr8_3:8847099-8847118 | Msa1274980:intron | 40.0% |
| !! | CAAAGGTGTTTCATCTAACG+GGG | - | chr8_3:8847100-8847119 | Msa1274980:intron | 40.0% |
| TCAGCATACAGAATAGGAGA+GGG | + | chr8_3:8847180-8847199 | None:intergenic | 40.0% | |
| TACCTTTCGGAGTTGAAATC+TGG | - | chr8_3:8847734-8847753 | Msa1274980:intron | 40.0% | |
| TTCCAGATTTCAACTCCGAA+AGG | + | chr8_3:8847739-8847758 | None:intergenic | 40.0% | |
| CTTGGCACTCCATAGTAAAA+TGG | + | chr8_3:8848210-8848229 | None:intergenic | 40.0% | |
| TCCTCAGAACTTGCACTACA+GGG | + | chr8_3:8844661-8844680 | None:intergenic | 45.0% | |
| TTCCTCAGAACTTGCACTAC+AGG | + | chr8_3:8844662-8844681 | None:intergenic | 45.0% | |
| AATTTACCAGCAGCCATTGC+AGG | + | chr8_3:8844704-8844723 | None:intergenic | 45.0% | |
| ! | TGGTGGTGATAACACTGGTT+GGG | + | chr8_3:8845636-8845655 | None:intergenic | 45.0% |
| CACCACCAGAATTGATTGTG+AGG | - | chr8_3:8845648-8845667 | Msa1274980:intron | 45.0% | |
| CACCTCACAATCAATTCTGG+TGG | + | chr8_3:8845653-8845672 | None:intergenic | 45.0% | |
| ! | ATGCCTTCATGTTGCTGTTG+TGG | - | chr8_3:8845924-8845943 | Msa1274980:intron | 45.0% |
| CAACCACAACAGCAACATGA+AGG | + | chr8_3:8845930-8845949 | None:intergenic | 45.0% | |
| TGATGCATGTGGTCTATTGG+AGG | + | chr8_3:8846076-8846095 | None:intergenic | 45.0% | |
| ! | AAGAGAGTATGAAGGGTCAG+AGG | - | chr8_3:8846197-8846216 | Msa1274980:intron | 45.0% |
| ! | AGAGAGTATGAAGGGTCAGA+GGG | - | chr8_3:8846198-8846217 | Msa1274980:intron | 45.0% |
| ! | GGGCTGCTGAATTTTCTTTG+TGG | - | chr8_3:8847120-8847139 | Msa1274980:intron | 45.0% |
| GTCAGCATACAGAATAGGAG+AGG | + | chr8_3:8847181-8847200 | None:intergenic | 45.0% | |
| GATGCGTCAGCATACAGAAT+AGG | + | chr8_3:8847186-8847205 | None:intergenic | 45.0% | |
| CTGACGCATCATCTCCATAT+AGG | - | chr8_3:8847196-8847215 | Msa1274980:intron | 45.0% | |
| CTCACATGACTCTAGTGTGA+AGG | - | chr8_3:8848234-8848253 | Msa1274980:intron | 45.0% | |
| TGCAATCAGTCCAAAGATGC+AGG | - | chr8_3:8848269-8848288 | Msa1274980:intron | 45.0% | |
| TCGAGTGTTACCTGCATCTT+TGG | + | chr8_3:8848282-8848301 | None:intergenic | 45.0% | |
| ACTTGCACTACAGGGTCACA+GGG | + | chr8_3:8844653-8844672 | None:intergenic | 50.0% | |
| AACTTGCACTACAGGGTCAC+AGG | + | chr8_3:8844654-8844673 | None:intergenic | 50.0% | |
| ACCCTGTAGTGCAAGTTCTG+AGG | - | chr8_3:8844657-8844676 | Msa1274980:three_prime_UTR | 50.0% | |
| AAGAAAGGAGCGAGAAGCCA+AGG | + | chr8_3:8844801-8844820 | None:intergenic | 50.0% | |
| ! | GGTGATAACACTGGTTGGGA+AGG | + | chr8_3:8845632-8845651 | None:intergenic | 50.0% |
| ! | CTGGTGGTGATAACACTGGT+TGG | + | chr8_3:8845637-8845656 | None:intergenic | 50.0% |
| AGTATGAAGGGTCAGAGGGA+TGG | - | chr8_3:8846202-8846221 | Msa1274980:intron | 50.0% | |
| CATGACTCTAGTGTGAAGGC+TGG | - | chr8_3:8848238-8848257 | Msa1274980:intron | 50.0% | |
| GTTTCTCCTGCAATGGCTGC+TGG | - | chr8_3:8844695-8844714 | Msa1274980:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 8844647 | 8848482 | 8844647 | ID=Msa1274980;Name=Msa1274980 |
| chr8_3 | mRNA | 8844647 | 8848482 | 8844647 | ID=Msa1274980-mRNA-1;Parent=Msa1274980;Name=Msa1274980-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.33|0.25|0.75|1|1|4|188|120 |
| chr8_3 | exon | 8844647 | 8844955 | 8844647 | ID=Msa1274980-mRNA-1:exon:3711;Parent=Msa1274980-mRNA-1 |
| chr8_3 | exon | 8845988 | 8846076 | 8845988 | ID=Msa1274980-mRNA-1:exon:3710;Parent=Msa1274980-mRNA-1 |
| chr8_3 | exon | 8847460 | 8847542 | 8847460 | ID=Msa1274980-mRNA-1:exon:3709;Parent=Msa1274980-mRNA-1 |
| chr8_3 | exon | 8848413 | 8848482 | 8848413 | ID=Msa1274980-mRNA-1:exon:3708;Parent=Msa1274980-mRNA-1 |
| chr8_3 | CDS | 8848413 | 8848482 | 8848413 | ID=Msa1274980-mRNA-1:cds;Parent=Msa1274980-mRNA-1 |
| chr8_3 | CDS | 8847460 | 8847542 | 8847460 | ID=Msa1274980-mRNA-1:cds;Parent=Msa1274980-mRNA-1 |
| chr8_3 | CDS | 8845988 | 8846076 | 8845988 | ID=Msa1274980-mRNA-1:cds;Parent=Msa1274980-mRNA-1 |
| chr8_3 | CDS | 8844835 | 8844955 | 8844835 | ID=Msa1274980-mRNA-1:cds;Parent=Msa1274980-mRNA-1 |
| chr8_3 | three_prime_UTR | 8844647 | 8844834 | 8844647 | ID=Msa1274980-mRNA-1:three_prime_utr;Parent=Msa1274980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
