Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181300 | XP_013443969.1 | 94.152 | 171 | 3 | 3 | 1 | 169 | 1 | 166 | 1.38e-51 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1181300 | Msa1310150 | 0.810644 | 1.040362e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181300 | MtrunA17_Chr8g0337261 | 87.647 | 170 | 2 | 3 | 1 | 169 | 1 | 152 | 1.08e-54 | 169 |
| Msa1181300 | MtrunA17_Chr8g0337251 | 63.905 | 169 | 23 | 7 | 1 | 169 | 1 | 131 | 1.32e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGCCCTCAACTTTATTT+AGG | 0.238868 | 8_1:-15628984 | Msa1181300:three_prime_UTR |
| AAGTTTAAGCGTGGAAAATT+TGG | 0.266461 | 8_1:-15629217 | Msa1181300:CDS |
| CAACTTTATTTAGGTCTGTT+TGG | 0.271608 | 8_1:-15628975 | Msa1181300:three_prime_UTR |
| CATGGTTATGGTTATGGTTA+TGG | 0.279954 | 8_1:-15629304 | Msa1181300:CDS |
| ATGAACAATTATTGTTCATT+TGG | 0.293223 | 8_1:-15629052 | Msa1181300:three_prime_UTR |
| AAGTATAAGCATGGAAAATT+TGG | 0.307873 | 8_1:-15629274 | Msa1181300:CDS |
| TATCATCATGGTTATGGTTA+TGG | 0.308064 | 8_1:-15629310 | Msa1181300:CDS |
| AAGCATGGTAGGTTTGGTTT+TGG | 0.322371 | 8_1:-15629241 | Msa1181300:CDS |
| GTTCCAACAAGCATTCAATT+TGG | 0.331950 | 8_1:-15630587 | None:intergenic |
| GCATTCAATTTGGTCACCTT+TGG | 0.343406 | 8_1:-15630577 | Msa1181300:five_prime_UTR |
| TCTTATCATGCTCCACAATA+TGG | 0.348923 | 8_1:-15629953 | Msa1181300:CDS |
| TATGGCTATCCATATCCTTC+TGG | 0.365272 | 8_1:-15629935 | Msa1181300:intron |
| GGAGGTTATCATCATGGTTA+TGG | 0.376411 | 8_1:-15629316 | Msa1181300:CDS |
| CGTTGGAAGCATGGTAGGTT+TGG | 0.389621 | 8_1:-15629247 | Msa1181300:CDS |
| TCAAGTGTACCAGAAGGATA+TGG | 0.413672 | 8_1:+15629926 | None:intergenic |
| CCTTCCGGTTATCCTCATTC+CGG | 0.421172 | 8_1:-15629992 | Msa1181300:CDS |
| GATCCTGGTGGAGGAGGATA+AGG | 0.427509 | 8_1:+15630124 | None:intergenic |
| GGAGGATAAGGTGGTGCTGC+TGG | 0.432218 | 8_1:+15630136 | None:intergenic |
| TGTTATAAAGGGCGTGGATC+TGG | 0.441402 | 8_1:-15629403 | Msa1181300:intron |
| ATATCCGGAATGAGGATAAC+CGG | 0.442176 | 8_1:+15629988 | None:intergenic |
| GCAAGCGATGGAAGTGATGC+AGG | 0.445817 | 8_1:-15629195 | Msa1181300:exon |
| GCAGGGGCGGCAGCTGCATA+CGG | 0.449879 | 8_1:-15629364 | Msa1181300:CDS |
| GGAGGAGGGTATCCACCTTC+CGG | 0.452585 | 8_1:-15630007 | Msa1181300:CDS |
| AAAGGGCGTGGATCTGGTAT+AGG | 0.462773 | 8_1:-15629397 | Msa1181300:intron |
| CACCATCTGTCGCATGGACA+TGG | 0.469597 | 8_1:-15629337 | Msa1181300:CDS |
| GTGGATAATAACCTCCTTGA+GGG | 0.483907 | 8_1:+15630089 | None:intergenic |
| GAGTAAGATCCTGGTGGAGG+AGG | 0.487082 | 8_1:+15630118 | None:intergenic |
| TGACCAAATTGAATGCTTGT+TGG | 0.494322 | 8_1:+15630584 | None:intergenic |
| TGAGGTGGATAAGCAGTTTG+TGG | 0.494744 | 8_1:+15630067 | None:intergenic |
| AGATGGTTGATGATGATATC+CGG | 0.500001 | 8_1:+15629973 | None:intergenic |
| ATGGTTATGGTTATGGACAT+GGG | 0.514342 | 8_1:-15629297 | Msa1181300:CDS |
| TTTGGCAAGCGTTGGAAGCA+TGG | 0.515401 | 8_1:-15629256 | Msa1181300:CDS |
| ACAGACCTAAATAAAGTTGA+GGG | 0.520171 | 8_1:+15628979 | None:intergenic |
| ATGGAAAATTTGGCAAGCGT+TGG | 0.520922 | 8_1:-15629264 | Msa1181300:CDS |
| CTCCATGTCCATGCGACAGA+TGG | 0.531469 | 8_1:+15629335 | None:intergenic |
| TACCCTCCTCCTGCATGTGG+TGG | 0.531746 | 8_1:+15630019 | None:intergenic |
| GCAAGCGTTGGAAGCATGGT+AGG | 0.542067 | 8_1:-15629252 | Msa1181300:CDS |
| TGCTCAACTGAAAATTGCAA+AGG | 0.546783 | 8_1:+15630538 | None:intergenic |
| TATGGTTATGGTTATGGACA+TGG | 0.547787 | 8_1:-15629298 | Msa1181300:CDS |
| AACAGACCTAAATAAAGTTG+AGG | 0.548568 | 8_1:+15628978 | None:intergenic |
| CCACCTTATCCTCCTCCACC+AGG | 0.554980 | 8_1:-15630127 | Msa1181300:CDS |
| TAGGAGTAAGATCCTGGTGG+AGG | 0.555589 | 8_1:+15630115 | None:intergenic |
| GGTATAGGAGGATTGATCGC+AGG | 0.560992 | 8_1:-15629382 | Msa1181300:CDS |
| GGACATGGAGGTTATCATCA+TGG | 0.565727 | 8_1:-15629322 | Msa1181300:CDS |
| TATCCACCACATGCAGGAGG+AGG | 0.567831 | 8_1:-15630022 | Msa1181300:CDS |
| GGATATGGATAGCCATATTG+TGG | 0.568164 | 8_1:+15629941 | None:intergenic |
| GTATAGGAGGATTGATCGCA+GGG | 0.571903 | 8_1:-15629381 | Msa1181300:CDS |
| CAAGCGATGGAAGTGATGCA+GGG | 0.575898 | 8_1:-15629194 | Msa1181300:exon |
| AAGTAGTAATAACTATTGCT+TGG | 0.576130 | 8_1:+15630511 | None:intergenic |
| GGGCGTGGATCTGGTATAGG+AGG | 0.586096 | 8_1:-15629394 | Msa1181300:CDS |
| TATTGTGGAGCATGATAAGA+TGG | 0.586561 | 8_1:+15629956 | None:intergenic |
| GGTGGATAAGCAGTTTGTGG+TGG | 0.597727 | 8_1:+15630070 | None:intergenic |
| TCACAATATCCACCACATGC+AGG | 0.598301 | 8_1:-15630028 | Msa1181300:CDS |
| ACATGTCATAAGATATCTCA+TGG | 0.598626 | 8_1:+15628933 | None:intergenic |
| GTGGAAAATTTGGCAAGCGA+TGG | 0.603805 | 8_1:-15629207 | Msa1181300:CDS |
| GGATAATAACCTCCTTGAGG+TGG | 0.604526 | 8_1:+15630052 | None:intergenic |
| GGACATGGGAAGTATAAGCA+TGG | 0.607097 | 8_1:-15629283 | Msa1181300:CDS |
| GCATGTGGTGGATATTGTGA+TGG | 0.607123 | 8_1:+15630031 | None:intergenic |
| GGTGCTCACCATCTGTCGCA+TGG | 0.609238 | 8_1:-15629343 | Msa1181300:CDS |
| GGATACCCTCCTCCTGCATG+TGG | 0.613236 | 8_1:+15630016 | None:intergenic |
| GATCAAGAATCTAGTGAGAG+AGG | 0.615149 | 8_1:-15630184 | Msa1181300:CDS |
| CCTGGTGGAGGAGGATAAGG+TGG | 0.622959 | 8_1:+15630127 | None:intergenic |
| GAATGAGGATAACCGGAAGG+TGG | 0.623841 | 8_1:+15629995 | None:intergenic |
| ATCCACCACATGCAGGAGGA+GGG | 0.623941 | 8_1:-15630021 | Msa1181300:CDS |
| AGGAGGATTGATCGCAGGGG+CGG | 0.626864 | 8_1:-15629377 | Msa1181300:CDS |
| AAGCGATGGAAGTGATGCAG+GGG | 0.637098 | 8_1:-15629193 | Msa1181300:exon |
| TGATGATGATATCCGGAATG+AGG | 0.639527 | 8_1:+15629980 | None:intergenic |
| GGTGGATAATAACCTCCTTG+AGG | 0.652986 | 8_1:+15630088 | None:intergenic |
| CAAACTGCTTATCCACCTCA+AGG | 0.653270 | 8_1:-15630064 | Msa1181300:CDS |
| GGGTGAATCAACATGAACAA+TGG | 0.655272 | 8_1:-15630220 | Msa1181300:exon |
| CTTTCTATAAAATCATCCAA+AGG | 0.660061 | 8_1:+15630561 | None:intergenic |
| TGGATAATAACCTCCTTGAG+GGG | 0.660128 | 8_1:+15630090 | None:intergenic |
| GGATAATAACCTCCTTGAGG+GGG | 0.663788 | 8_1:+15630091 | None:intergenic |
| CCGGAATGAGGATAACCGGA+AGG | 0.667322 | 8_1:+15629992 | None:intergenic |
| CAATATCCACCACATGCAGG+AGG | 0.678601 | 8_1:-15630025 | Msa1181300:CDS |
| CATCTGTCGCATGGACATGG+AGG | 0.679502 | 8_1:-15629334 | Msa1181300:CDS |
| GGATAGGAGTAAGATCCTGG+TGG | 0.709858 | 8_1:+15630112 | None:intergenic |
| GATGGATAATAACCTCCTTG+AGG | 0.733983 | 8_1:+15630049 | None:intergenic |
| ACTGCTTATCCACCTCAAGG+AGG | 0.744640 | 8_1:-15630061 | Msa1181300:CDS |
| TATAGGAGGATTGATCGCAG+GGG | 0.773574 | 8_1:-15629380 | Msa1181300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTATTGTTGTTATAAA+GGG | - | chr8_1:15630087-15630106 | Msa1181300:CDS | 10.0% |
| !! | AATATACTCGATAAAAAAAT+GGG | + | chr8_1:15629605-15629624 | None:intergenic | 15.0% |
| !! | TAATATACTCGATAAAAAAA+TGG | + | chr8_1:15629606-15629625 | None:intergenic | 15.0% |
| !!! | TGCTAGTTTTAAATATTATT+AGG | - | chr8_1:15629652-15629671 | Msa1181300:intron | 15.0% |
| !!! | CTAATTTATTGTTGTTATAA+AGG | - | chr8_1:15630086-15630105 | Msa1181300:CDS | 15.0% |
| !!! | AAAGTTTCTTAGTTTGAATT+TGG | - | chr8_1:15629061-15629080 | Msa1181300:three_prime_UTR | 20.0% |
| !! | AATCATAGGAAAAAAAACAA+AGG | + | chr8_1:15629166-15629185 | None:intergenic | 20.0% |
| !!! | AAATTTCTGCTTTCTTTTAT+TGG | - | chr8_1:15629695-15629714 | Msa1181300:intron | 20.0% |
| !!! | AATTTCTGCTTTCTTTTATT+GGG | - | chr8_1:15629696-15629715 | Msa1181300:intron | 20.0% |
| !! | ATGAACAATTATTGTTCATT+TGG | - | chr8_1:15630449-15630468 | Msa1181300:intron | 20.0% |
| ! | CTTTCTATAAAATCATCCAA+AGG | + | chr8_1:15628943-15628962 | None:intergenic | 25.0% |
| ! | AAGTAGTAATAACTATTGCT+TGG | + | chr8_1:15628993-15629012 | None:intergenic | 25.0% |
| ! | TTTAATTCTTCTTCCTTTCT+TGG | - | chr8_1:15629094-15629113 | Msa1181300:three_prime_UTR | 25.0% |
| ! | CAAAATCATGCAAAATATCT+TGG | + | chr8_1:15629126-15629145 | None:intergenic | 25.0% |
| !! | CAAGATATTTTGCATGATTT+TGG | - | chr8_1:15629124-15629143 | Msa1181300:three_prime_UTR | 25.0% |
| !! | TGCCAATTTCAAATTGTTTT+AGG | - | chr8_1:15629260-15629279 | Msa1181300:CDS | 25.0% |
| !!! | GCCAATTTCAAATTGTTTTA+GGG | - | chr8_1:15629261-15629280 | Msa1181300:CDS | 25.0% |
| !! | ACCCTAAAACAATTTGAAAT+TGG | + | chr8_1:15629265-15629284 | None:intergenic | 25.0% |
| ! | TATATGATCATGAGTGAATT+TGG | - | chr8_1:15629624-15629643 | Msa1181300:intron | 25.0% |
| ! | CATGTATTACATAACAATAC+TGG | + | chr8_1:15629781-15629800 | None:intergenic | 25.0% |
| !!! | TATAAAGTGTTGTCAAATAG+AGG | - | chr8_1:15629807-15629826 | Msa1181300:intron | 25.0% |
| ! | AACAACATTGATCACAAAAA+TGG | - | chr8_1:15629904-15629923 | Msa1181300:intron | 25.0% |
| !!! | AGATCAATGTTTTTTGCTAA+TGG | - | chr8_1:15629946-15629965 | Msa1181300:CDS | 25.0% |
| ! | CAAAGATGTAATATCAAGTA+TGG | + | chr8_1:15630020-15630039 | None:intergenic | 25.0% |
| ! | AAGTATAAGCATGGAAAATT+TGG | - | chr8_1:15630227-15630246 | Msa1181300:intron | 25.0% |
| ! | ATCTTGGAATTTTCCAAGAA+AGG | + | chr8_1:15629110-15629129 | None:intergenic | 30.0% |
| ! | ATTTTGGATTCCATCAATCA+TGG | - | chr8_1:15629140-15629159 | Msa1181300:three_prime_UTR | 30.0% |
| TGTTTATGTGTTAAGCCAAA+GGG | + | chr8_1:15629197-15629216 | None:intergenic | 30.0% | |
| TTGTTTATGTGTTAAGCCAA+AGG | + | chr8_1:15629198-15629217 | None:intergenic | 30.0% | |
| ! | CTGGATTGTTAAATTTTGCT+AGG | + | chr8_1:15629762-15629781 | None:intergenic | 30.0% |
| CAGAATTTGTACAAACTATG+TGG | - | chr8_1:15629867-15629886 | Msa1181300:intron | 30.0% | |
| TAACACATGCAAGAAACATT+AGG | + | chr8_1:15629982-15630001 | None:intergenic | 30.0% | |
| TATCATCATGGTTATGGTTA+TGG | - | chr8_1:15630191-15630210 | Msa1181300:CDS | 30.0% | |
| AAGTTTAAGCGTGGAAAATT+TGG | - | chr8_1:15630284-15630303 | Msa1181300:intron | 30.0% | |
| !!! | ACGTAGTTTTGAATTTCAGT+TGG | - | chr8_1:15630417-15630436 | Msa1181300:intron | 30.0% |
| ACAGACCTAAATAAAGTTGA+GGG | + | chr8_1:15630525-15630544 | None:intergenic | 30.0% | |
| AACAGACCTAAATAAAGTTG+AGG | + | chr8_1:15630526-15630545 | None:intergenic | 30.0% | |
| ! | CAACTTTATTTAGGTCTGTT+TGG | - | chr8_1:15630526-15630545 | Msa1181300:five_prime_UTR | 30.0% |
| ACATGTCATAAGATATCTCA+TGG | + | chr8_1:15630571-15630590 | None:intergenic | 30.0% | |
| TGCTCAACTGAAAATTGCAA+AGG | + | chr8_1:15628966-15628985 | None:intergenic | 35.0% | |
| AAAACAAAGGCCATGATTGA+TGG | + | chr8_1:15629153-15629172 | None:intergenic | 35.0% | |
| ! | AAAGGGTATGGAAGAATCAT+AGG | + | chr8_1:15629180-15629199 | None:intergenic | 35.0% |
| TATGATTCTTCCATACCCTT+TGG | - | chr8_1:15629179-15629198 | Msa1181300:three_prime_UTR | 35.0% | |
| ! | GGTCTGTTTTCACATATAAC+AGG | - | chr8_1:15629338-15629357 | Msa1181300:CDS | 35.0% |
| !! | AGATGGTTGATGATGATATC+CGG | + | chr8_1:15629531-15629550 | None:intergenic | 35.0% |
| TATTGTGGAGCATGATAAGA+TGG | + | chr8_1:15629548-15629567 | None:intergenic | 35.0% | |
| TCTTATCATGCTCCACAATA+TGG | - | chr8_1:15629548-15629567 | Msa1181300:intron | 35.0% | |
| GGCAATAGCTGCTATATAAT+TGG | + | chr8_1:15629741-15629760 | None:intergenic | 35.0% | |
| ! | TATTGTTGTTATAAAGGGCG+TGG | - | chr8_1:15630092-15630111 | Msa1181300:CDS | 35.0% |
| CATGGTTATGGTTATGGTTA+TGG | - | chr8_1:15630197-15630216 | Msa1181300:CDS | 35.0% | |
| TATGGTTATGGTTATGGACA+TGG | - | chr8_1:15630203-15630222 | Msa1181300:CDS | 35.0% | |
| ATGGTTATGGTTATGGACAT+GGG | - | chr8_1:15630204-15630223 | Msa1181300:CDS | 35.0% | |
| ! | GAAAGCCCTCAACTTTATTT+AGG | - | chr8_1:15630517-15630536 | Msa1181300:intron | 35.0% |
| GCATTCAATTTGGTCACCTT+TGG | - | chr8_1:15628924-15628943 | Msa1181300:three_prime_UTR | 40.0% | |
| ATGTGTTAAGCCAAAGGGTA+TGG | + | chr8_1:15629192-15629211 | None:intergenic | 40.0% | |
| GGGTGAATCAACATGAACAA+TGG | - | chr8_1:15629281-15629300 | Msa1181300:CDS | 40.0% | |
| GATCAAGAATCTAGTGAGAG+AGG | - | chr8_1:15629317-15629336 | Msa1181300:CDS | 40.0% | |
| TGGATAATAACCTCCTTGAG+GGG | + | chr8_1:15629414-15629433 | None:intergenic | 40.0% | |
| GTGGATAATAACCTCCTTGA+GGG | + | chr8_1:15629415-15629434 | None:intergenic | 40.0% | |
| GATGGATAATAACCTCCTTG+AGG | + | chr8_1:15629455-15629474 | None:intergenic | 40.0% | |
| ATATCCGGAATGAGGATAAC+CGG | + | chr8_1:15629516-15629535 | None:intergenic | 40.0% | |
| ! | TGATGATGATATCCGGAATG+AGG | + | chr8_1:15629524-15629543 | None:intergenic | 40.0% |
| GGATATGGATAGCCATATTG+TGG | + | chr8_1:15629563-15629582 | None:intergenic | 40.0% | |
| TATGGCTATCCATATCCTTC+TGG | - | chr8_1:15629566-15629585 | Msa1181300:intron | 40.0% | |
| TCAAGTGTACCAGAAGGATA+TGG | + | chr8_1:15629578-15629597 | None:intergenic | 40.0% | |
| GGAGGTTATCATCATGGTTA+TGG | - | chr8_1:15630185-15630204 | Msa1181300:CDS | 40.0% | |
| ATGGAAAATTTGGCAAGCGT+TGG | - | chr8_1:15630237-15630256 | Msa1181300:intron | 40.0% | |
| !! | AAGCATGGTAGGTTTGGTTT+TGG | - | chr8_1:15630260-15630279 | Msa1181300:intron | 40.0% |
| !!! | AGCATGGTAGGTTTGGTTTT+GGG | - | chr8_1:15630261-15630280 | Msa1181300:intron | 40.0% |
| ! | GTCTTTTGTTCAAACGTGTG+TGG | - | chr8_1:15630479-15630498 | Msa1181300:intron | 40.0% |
| GGATAATAACCTCCTTGAGG+GGG | + | chr8_1:15629413-15629432 | None:intergenic | 45.0% | |
| GGTGGATAATAACCTCCTTG+AGG | + | chr8_1:15629416-15629435 | None:intergenic | 45.0% | |
| TGAGGTGGATAAGCAGTTTG+TGG | + | chr8_1:15629437-15629456 | None:intergenic | 45.0% | |
| CAAACTGCTTATCCACCTCA+AGG | - | chr8_1:15629437-15629456 | Msa1181300:intron | 45.0% | |
| GGATAATAACCTCCTTGAGG+TGG | + | chr8_1:15629413-15629432 | None:intergenic | 45.0% | |
| !! | GCATGTGGTGGATATTGTGA+TGG | + | chr8_1:15629473-15629492 | None:intergenic | 45.0% |
| TCACAATATCCACCACATGC+AGG | - | chr8_1:15629473-15629492 | Msa1181300:intron | 45.0% | |
| GGATGATCAAGTGTACCAGA+AGG | + | chr8_1:15629584-15629603 | None:intergenic | 45.0% | |
| ! | TGTTATAAAGGGCGTGGATC+TGG | - | chr8_1:15630098-15630117 | Msa1181300:CDS | 45.0% |
| GTATAGGAGGATTGATCGCA+GGG | - | chr8_1:15630120-15630139 | Msa1181300:CDS | 45.0% | |
| TATAGGAGGATTGATCGCAG+GGG | - | chr8_1:15630121-15630140 | Msa1181300:CDS | 45.0% | |
| GGACATGGAGGTTATCATCA+TGG | - | chr8_1:15630179-15630198 | Msa1181300:CDS | 45.0% | |
| ! | GGACATGGGAAGTATAAGCA+TGG | - | chr8_1:15630218-15630237 | Msa1181300:exon | 45.0% |
| !!! | GGTTTTGGGAAGTTTAAGCG+TGG | - | chr8_1:15630275-15630294 | Msa1181300:intron | 45.0% |
| GTGGAAAATTTGGCAAGCGA+TGG | - | chr8_1:15630294-15630313 | Msa1181300:intron | 45.0% | |
| TAGGAGTAAGATCCTGGTGG+AGG | + | chr8_1:15629389-15629408 | None:intergenic | 50.0% | |
| GGATAGGAGTAAGATCCTGG+TGG | + | chr8_1:15629392-15629411 | None:intergenic | 50.0% | |
| TCTTACTCCTATCCCCCTCA+AGG | - | chr8_1:15629398-15629417 | Msa1181300:intron | 50.0% | |
| ATAACCTCCTTGAGGGGGAT+AGG | + | chr8_1:15629408-15629427 | None:intergenic | 50.0% | |
| GGTGGATAAGCAGTTTGTGG+TGG | + | chr8_1:15629434-15629453 | None:intergenic | 50.0% | |
| ACTGCTTATCCACCTCAAGG+AGG | - | chr8_1:15629440-15629459 | Msa1181300:intron | 50.0% | |
| CAATATCCACCACATGCAGG+AGG | - | chr8_1:15629476-15629495 | Msa1181300:intron | 50.0% | |
| GAATGAGGATAACCGGAAGG+TGG | + | chr8_1:15629509-15629528 | None:intergenic | 50.0% | |
| CCTTCCGGTTATCCTCATTC+CGG | - | chr8_1:15629509-15629528 | Msa1181300:intron | 50.0% | |
| ! | AAAGGGCGTGGATCTGGTAT+AGG | - | chr8_1:15630104-15630123 | Msa1181300:CDS | 50.0% |
| GGTATAGGAGGATTGATCGC+AGG | - | chr8_1:15630119-15630138 | Msa1181300:CDS | 50.0% | |
| !! | TTTGGCAAGCGTTGGAAGCA+TGG | - | chr8_1:15630245-15630264 | Msa1181300:intron | 50.0% |
| ! | CGTTGGAAGCATGGTAGGTT+TGG | - | chr8_1:15630254-15630273 | Msa1181300:intron | 50.0% |
| CAAGCGATGGAAGTGATGCA+GGG | - | chr8_1:15630307-15630326 | Msa1181300:intron | 50.0% | |
| AAGCGATGGAAGTGATGCAG+GGG | - | chr8_1:15630308-15630327 | Msa1181300:intron | 50.0% | |
| GATCCTGGTGGAGGAGGATA+AGG | + | chr8_1:15629380-15629399 | None:intergenic | 55.0% | |
| GAGTAAGATCCTGGTGGAGG+AGG | + | chr8_1:15629386-15629405 | None:intergenic | 55.0% | |
| GGGGGATAGGAGTAAGATCC+TGG | + | chr8_1:15629395-15629414 | None:intergenic | 55.0% | |
| TACTCCTATCCCCCTCAAGG+AGG | - | chr8_1:15629401-15629420 | Msa1181300:intron | 55.0% | |
| TATCCACCACATGCAGGAGG+AGG | - | chr8_1:15629479-15629498 | Msa1181300:intron | 55.0% | |
| ATCCACCACATGCAGGAGGA+GGG | - | chr8_1:15629480-15629499 | Msa1181300:intron | 55.0% | |
| CCGGAATGAGGATAACCGGA+AGG | + | chr8_1:15629512-15629531 | None:intergenic | 55.0% | |
| CACCATCTGTCGCATGGACA+TGG | - | chr8_1:15630164-15630183 | Msa1181300:CDS | 55.0% | |
| CTCCATGTCCATGCGACAGA+TGG | + | chr8_1:15630169-15630188 | None:intergenic | 55.0% | |
| CATCTGTCGCATGGACATGG+AGG | - | chr8_1:15630167-15630186 | Msa1181300:CDS | 55.0% | |
| !! | GCAAGCGTTGGAAGCATGGT+AGG | - | chr8_1:15630249-15630268 | Msa1181300:intron | 55.0% |
| GCAAGCGATGGAAGTGATGC+AGG | - | chr8_1:15630306-15630325 | Msa1181300:intron | 55.0% | |
| !! | GGAGGATAAGGTGGTGCTGC+TGG | + | chr8_1:15629368-15629387 | None:intergenic | 60.0% |
| CCTGGTGGAGGAGGATAAGG+TGG | + | chr8_1:15629377-15629396 | None:intergenic | 60.0% | |
| CCACCTTATCCTCCTCCACC+AGG | - | chr8_1:15629374-15629393 | Msa1181300:CDS | 60.0% | |
| TACCCTCCTCCTGCATGTGG+TGG | + | chr8_1:15629485-15629504 | None:intergenic | 60.0% | |
| GGATACCCTCCTCCTGCATG+TGG | + | chr8_1:15629488-15629507 | None:intergenic | 60.0% | |
| !! | GGAGGAGGGTATCCACCTTC+CGG | - | chr8_1:15629494-15629513 | Msa1181300:intron | 60.0% |
| GGGCGTGGATCTGGTATAGG+AGG | - | chr8_1:15630107-15630126 | Msa1181300:CDS | 60.0% | |
| AGGAGGATTGATCGCAGGGG+CGG | - | chr8_1:15630124-15630143 | Msa1181300:CDS | 60.0% | |
| GGTGCTCACCATCTGTCGCA+TGG | - | chr8_1:15630158-15630177 | Msa1181300:CDS | 60.0% | |
| GCAGGGGCGGCAGCTGCATA+CGG | - | chr8_1:15630137-15630156 | Msa1181300:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 15628918 | 15630605 | 15628918 | ID=Msa1181300;Name=Msa1181300 |
| chr8_1 | mRNA | 15628918 | 15630605 | 15628918 | ID=Msa1181300-mRNA-1;Parent=Msa1181300;Name=Msa1181300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=93|1|1|1|0.5|0.33|3|283|169 |
| chr8_1 | exon | 15628918 | 15629415 | 15628918 | ID=Msa1181300-mRNA-1:exon:5876;Parent=Msa1181300-mRNA-1 |
| chr8_1 | exon | 15629936 | 15630241 | 15629936 | ID=Msa1181300-mRNA-1:exon:5875;Parent=Msa1181300-mRNA-1 |
| chr8_1 | exon | 15630524 | 15630605 | 15630524 | ID=Msa1181300-mRNA-1:exon:5874;Parent=Msa1181300-mRNA-1 |
| chr8_1 | five_prime_UTR | 15630524 | 15630605 | 15630524 | ID=Msa1181300-mRNA-1:five_prime_utr;Parent=Msa1181300-mRNA-1 |
| chr8_1 | five_prime_UTR | 15630231 | 15630241 | 15630231 | ID=Msa1181300-mRNA-1:five_prime_utr;Parent=Msa1181300-mRNA-1 |
| chr8_1 | CDS | 15629936 | 15630230 | 15629936 | ID=Msa1181300-mRNA-1:cds;Parent=Msa1181300-mRNA-1 |
| chr8_1 | CDS | 15629201 | 15629415 | 15629201 | ID=Msa1181300-mRNA-1:cds;Parent=Msa1181300-mRNA-1 |
| chr8_1 | three_prime_UTR | 15628918 | 15629200 | 15628918 | ID=Msa1181300-mRNA-1:three_prime_utr;Parent=Msa1181300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
