Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1181410 | Msa1244900 | -0.813804 | 2.125885e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGGGAGCTTTATGTATT+TGG | 0.111640 | 8_1:-15786259 | Msa1181410:three_prime_UTR |
| TTTAGGCATAATAGAAATTT+AGG | 0.174725 | 8_1:-15786429 | Msa1181410:three_prime_UTR |
| TAAAGACAATTATTAGAATT+TGG | 0.182619 | 8_1:-15786393 | Msa1181410:three_prime_UTR |
| TTGCTGGAGGCTCCACTTAT+TGG | 0.196525 | 8_1:-15787128 | Msa1181410:intron |
| CAATCTTAGCCCCTTTGTTT+TGG | 0.222203 | 8_1:+15787163 | Msa1181400:intron |
| TTGATTACAGTGAGCGAATT+TGG | 0.226060 | 8_1:+15791217 | Msa1181400:intron |
| AGTTGTATATTTCTCAAATC+TGG | 0.231560 | 8_1:-15786276 | Msa1181410:three_prime_UTR |
| CTGCAAATAAGTAGTTATTT+AGG | 0.240158 | 8_1:-15786446 | Msa1181410:three_prime_UTR |
| ACGCAGTGGTCTTGTTTAAA+AGG | 0.246599 | 8_1:+15789470 | Msa1181400:intron |
| TTGAGGTTTGATTTGGGATA+TGG | 0.291368 | 8_1:-15790005 | Msa1181410:three_prime_UTR |
| TTTGTTTCTATTTATATTGT+AGG | 0.297099 | 8_1:-15786234 | None:intergenic |
| TTGACGTATGACGACGATTT+CGG | 0.307355 | 8_1:+15791176 | Msa1181400:intron |
| TTTCGACGTGCTTGAATGAT+TGG | 0.335908 | 8_1:+15791111 | Msa1181400:intron |
| GTTGTAGATTATAGCATAAT+CGG | 0.336560 | 8_1:+15789430 | Msa1181400:intron |
| CATGAAATATTTCTCAAATA+CGG | 0.341548 | 8_1:-15786361 | Msa1181410:three_prime_UTR |
| TTGTTGTTTGAGGTTTGATT+TGG | 0.341987 | 8_1:-15790012 | Msa1181410:three_prime_UTR |
| AAATACGTGGTAGGGTAGTT+TGG | 0.368296 | 8_1:+15792856 | Msa1181400:intron |
| TGATTACAGTGAGCGAATTT+GGG | 0.371238 | 8_1:+15791218 | Msa1181400:intron |
| ATTGGTACTATGTCACTTGC+TGG | 0.386979 | 8_1:-15787144 | Msa1181410:three_prime_UTR |
| TGCAACATGTTTCATTTCAT+AGG | 0.396726 | 8_1:-15786499 | Msa1181410:three_prime_UTR |
| CAGTGAATCCACAGTAAACT+TGG | 0.401488 | 8_1:+15791150 | Msa1181400:intron |
| TTAGCGTGTAGATTTGTCTA+TGG | 0.405092 | 8_1:-15790300 | Msa1181410:intron |
| ATGAAATATTTCTCAAATAC+GGG | 0.407181 | 8_1:-15786360 | Msa1181410:three_prime_UTR |
| TGTTGTTTGAGGTTTGATTT+GGG | 0.410228 | 8_1:-15790011 | Msa1181410:three_prime_UTR |
| GTTGAAGAAGATGAACAAAA+TGG | 0.420863 | 8_1:-15790980 | Msa1181410:CDS |
| TGTTTCATTTCATAGGTTCA+TGG | 0.431150 | 8_1:-15786492 | Msa1181410:three_prime_UTR |
| GATTAGGATGTTGTTGTTTG+AGG | 0.448217 | 8_1:-15790022 | Msa1181410:intron |
| AATTTGGGAGAGAGGGAGAA+GGG | 0.449963 | 8_1:+15791233 | Msa1181400:intron |
| GAATTTGGGAGAGAGGGAGA+AGG | 0.453041 | 8_1:+15791232 | Msa1181400:intron |
| ATTTGAGAAATATACAACTT+TGG | 0.460346 | 8_1:+15786280 | Msa1181400:intron |
| CAAAACAAAGGGGCTAAGAT+TGG | 0.461270 | 8_1:-15787162 | Msa1181410:three_prime_UTR |
| GTTGTATATTTCTCAAATCT+GGG | 0.464902 | 8_1:-15786275 | Msa1181410:three_prime_UTR |
| AGGGTAGTTTGGAACATATA+TGG | 0.464928 | 8_1:+15792867 | Msa1181400:intron |
| CTGCTATGATCCAAAACAAA+GGG | 0.473945 | 8_1:-15787173 | Msa1181410:three_prime_UTR |
| TTTGGGATATGGCAAGTCAA+TGG | 0.478797 | 8_1:-15789994 | Msa1181410:three_prime_UTR |
| ACACAACTTGAGTCGTTTGA+AGG | 0.483931 | 8_1:-15790943 | Msa1181410:intron |
| AGATCTTCATACCAAGAGCT+TGG | 0.484140 | 8_1:-15787219 | Msa1181410:three_prime_UTR |
| TTGGGATATGGCAAGTCAAT+GGG | 0.490003 | 8_1:-15789993 | Msa1181410:three_prime_UTR |
| AACGACTCAAGTTGTGTTGG+TGG | 0.503292 | 8_1:+15790949 | Msa1181400:intron |
| AAACTGAACACACCAATAAG+TGG | 0.507578 | 8_1:+15787116 | Msa1181400:intron |
| TGATTGTAATTGCAGGAACT+AGG | 0.520195 | 8_1:-15786530 | Msa1181410:intron |
| GCTTAGTGAAATACGTGGTA+GGG | 0.551134 | 8_1:+15792848 | Msa1181400:intron |
| AGTGAATCCACAGTAAACTT+GGG | 0.556136 | 8_1:+15791151 | Msa1181400:intron |
| AGTGAGCGAATTTGGGAGAG+AGG | 0.557305 | 8_1:+15791225 | Msa1181400:intron |
| TTGTCGTAAATCCAAGCTCT+TGG | 0.558560 | 8_1:+15787208 | Msa1181400:intron |
| TATTTGATTTAAGTTCAACA+TGG | 0.561164 | 8_1:-15786327 | Msa1181410:three_prime_UTR |
| ATTTGATTTAAGTTCAACAT+GGG | 0.561636 | 8_1:-15786326 | Msa1181410:three_prime_UTR |
| AGCTTAGTGAAATACGTGGT+AGG | 0.562731 | 8_1:+15792847 | Msa1181400:intron |
| GTGAGCGAATTTGGGAGAGA+GGG | 0.563690 | 8_1:+15791226 | Msa1181400:intron |
| TTGGTATGAAGATCTCTCAA+TGG | 0.568077 | 8_1:+15787227 | Msa1181400:intron |
| AATGGGACAATTCAACATGC+AGG | 0.588055 | 8_1:-15789976 | Msa1181410:intron |
| TGATTTAAGTTCAACATGGG+GGG | 0.589578 | 8_1:-15786323 | Msa1181410:three_prime_UTR |
| GACGACGATTTCGGATTCGA+CGG | 0.591105 | 8_1:+15791185 | Msa1181400:intron |
| TTTAAAAGACTTCGACGCAG+TGG | 0.593041 | 8_1:+15789456 | Msa1181400:intron |
| GGTACTATGTCACTTGCTGG+AGG | 0.602018 | 8_1:-15787141 | Msa1181410:three_prime_UTR |
| AATCATTCAAGCACGTCGAA+AGG | 0.605341 | 8_1:-15791109 | Msa1181410:intron |
| TTTGATTTAAGTTCAACATG+GGG | 0.609612 | 8_1:-15786325 | Msa1181410:three_prime_UTR |
| TCAAACGACTCAAGTTGTGT+TGG | 0.615450 | 8_1:+15790946 | Msa1181400:intron |
| GTGAATCCACAGTAAACTTG+GGG | 0.631235 | 8_1:+15791152 | Msa1181400:intron |
| GTCAAACCCCAAGTTTACTG+TGG | 0.647691 | 8_1:-15791158 | Msa1181410:CDS |
| TTGATTTAAGTTCAACATGG+GGG | 0.650304 | 8_1:-15786324 | Msa1181410:three_prime_UTR |
| AAATATTTCTCAAATACGGG+CGG | 0.662546 | 8_1:-15786357 | Msa1181410:three_prime_UTR |
| TATTTGAGATAATGACCATG+AGG | 0.675520 | 8_1:-15789756 | Msa1181410:intron |
| ACTGCTATGATCCAAAACAA+AGG | 0.687169 | 8_1:-15787174 | Msa1181410:three_prime_UTR |
| TGCTATGATCCAAAACAAAG+GGG | 0.689346 | 8_1:-15787172 | Msa1181410:three_prime_UTR |
| GACGATTTCGGATTCGACGG+CGG | 0.700032 | 8_1:+15791188 | Msa1181400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAATTAAAGAAATAA+AGG | + | chr8_1:15786390-15786409 | Msa1181400:intron | 10.0% |
| !!! | TTAGTACATAATATTTTTTT+TGG | + | chr8_1:15786480-15786499 | Msa1181400:intron | 10.0% |
| !!! | AACCTAATTTTTTTATTAAA+CGG | - | chr8_1:15786896-15786915 | Msa1181410:intron | 10.0% |
| !! | ATTGTGATAAAATAAATTTA+GGG | + | chr8_1:15788038-15788057 | Msa1181400:intron | 10.0% |
| !! | AATTTATGTAAAACAAAAAT+GGG | + | chr8_1:15788356-15788375 | Msa1181400:intron | 10.0% |
| !! | TAATTTATGTAAAACAAAAA+TGG | + | chr8_1:15788357-15788376 | Msa1181400:intron | 10.0% |
| !!! | TTTTTAATAATAAAATCTGA+AGG | + | chr8_1:15791325-15791344 | Msa1181400:intron | 10.0% |
| !!! | ATGTAATGTACTTTTTATTT+TGG | + | chr8_1:15787175-15787194 | Msa1181400:intron | 15.0% |
| !! | TAAATGCAAAAAAAACATAA+AGG | - | chr8_1:15787556-15787575 | Msa1181410:intron | 15.0% |
| !! | AAATGCAAAAAAAACATAAA+GGG | - | chr8_1:15787557-15787576 | Msa1181410:intron | 15.0% |
| !! | GATTGTGATAAAATAAATTT+AGG | + | chr8_1:15788039-15788058 | Msa1181400:intron | 15.0% |
| !!! | TTTATTTTATCATCTGTATT+TGG | - | chr8_1:15788428-15788447 | Msa1181410:intron | 15.0% |
| !!! | TTATTTTATCATCTGTATTT+GGG | - | chr8_1:15788429-15788448 | Msa1181410:intron | 15.0% |
| !!! | TACTATAACTTCTTTTAATT+GGG | + | chr8_1:15788576-15788595 | Msa1181400:intron | 15.0% |
| !!! | TTACTATAACTTCTTTTAAT+TGG | + | chr8_1:15788577-15788596 | Msa1181400:intron | 15.0% |
| !! | ATTAAAAGAAGTTATAGTAA+TGG | - | chr8_1:15788577-15788596 | Msa1181410:intron | 15.0% |
| !!! | CATTTTCATTTAAAAATTCA+GGG | + | chr8_1:15788624-15788643 | Msa1181400:intron | 15.0% |
| !!! | TCATTTTCATTTAAAAATTC+AGG | + | chr8_1:15788625-15788644 | Msa1181400:intron | 15.0% |
| !!! | TTTTTAAATGAAAATGAATG+AGG | - | chr8_1:15788628-15788647 | Msa1181410:intron | 15.0% |
| !!! | TTTTAAATGAAAATGAATGA+GGG | - | chr8_1:15788629-15788648 | Msa1181410:intron | 15.0% |
| !!! | ATAAATGAATTTGTTTTACA+TGG | - | chr8_1:15788690-15788709 | Msa1181410:intron | 15.0% |
| !! | ATTTCTATTTATCCTAATAA+CGG | + | chr8_1:15790699-15790718 | Msa1181400:intron | 15.0% |
| !! | TATTATTAAAAAGCAATTCT+TGG | - | chr8_1:15791333-15791352 | Msa1181410:intron | 15.0% |
| !!! | AAAAAACTGATCTTTTTTTA+GGG | + | chr8_1:15791546-15791565 | Msa1181400:intron | 15.0% |
| !!! | TAAAAAACTGATCTTTTTTT+AGG | + | chr8_1:15791547-15791566 | Msa1181400:intron | 15.0% |
| !! | AAAATAGAAAAAAAAAGAGA+AGG | + | chr8_1:15792023-15792042 | Msa1181400:intron | 15.0% |
| !! | TAAAGACAATTATTAGAATT+TGG | - | chr8_1:15792713-15792732 | Msa1181410:intron | 15.0% |
| !!! | AGTTGGTATTTATACTTTTT+TGG | + | chr8_1:15786323-15786342 | Msa1181400:intron | 20.0% |
| !!! | CTTTAATTATTTCTTGCATT+TGG | - | chr8_1:15786396-15786415 | Msa1181410:three_prime_UTR | 20.0% |
| !! | GTCCGTTTAATAAAAAAATT+AGG | + | chr8_1:15786901-15786920 | Msa1181400:intron | 20.0% |
| !! | TTATCATCAAGAATAGTAAT+AGG | - | chr8_1:15787315-15787334 | Msa1181410:intron | 20.0% |
| !! | TATCATCAAGAATAGTAATA+GGG | - | chr8_1:15787316-15787335 | Msa1181410:intron | 20.0% |
| !!! | AAAATTTCACATTTGAAATG+AGG | - | chr8_1:15787473-15787492 | Msa1181410:intron | 20.0% |
| !!! | TTTTTGAAAACTTGATTTTG+TGG | - | chr8_1:15788078-15788097 | Msa1181410:intron | 20.0% |
| !!! | ATCATTCATGATTTTAATAG+TGG | - | chr8_1:15788244-15788263 | Msa1181410:intron | 20.0% |
| !!! | ATTCTTAATTTATTTTCACG+AGG | - | chr8_1:15788538-15788557 | Msa1181410:intron | 20.0% |
| !!! | GTTCTGAAAATTAATTGATT+AGG | - | chr8_1:15789033-15789052 | Msa1181410:intron | 20.0% |
| !! | ATATATACCAAATTGAAAGA+AGG | + | chr8_1:15789481-15789500 | Msa1181400:intron | 20.0% |
| !!! | ATAACCCTTTTTAGTTTATT+TGG | - | chr8_1:15789590-15789609 | Msa1181410:intron | 20.0% |
| !! | ATGTCCAAATAAACTAAAAA+GGG | + | chr8_1:15789597-15789616 | Msa1181400:intron | 20.0% |
| !! | AATGTCCAAATAAACTAAAA+AGG | + | chr8_1:15789598-15789617 | Msa1181400:intron | 20.0% |
| !! | TTACTAGAATATGTGAATAA+TGG | - | chr8_1:15790058-15790077 | Msa1181410:intron | 20.0% |
| !!! | CATTCTTAACTACTTTTTTT+TGG | - | chr8_1:15790163-15790182 | Msa1181410:intron | 20.0% |
| !!! | TTGAGGATTTTTTATTATTC+TGG | - | chr8_1:15790428-15790447 | Msa1181410:intron | 20.0% |
| !!! | TTGTTTTGTTTATTATGATG+TGG | - | chr8_1:15790576-15790595 | Msa1181410:intron | 20.0% |
| !! | TTTCTATTTATCCTAATAAC+GGG | + | chr8_1:15790698-15790717 | Msa1181400:intron | 20.0% |
| !! | TTTGAATTTCAAAATGATAG+TGG | + | chr8_1:15791390-15791409 | Msa1181400:intron | 20.0% |
| !!! | ATTCACAATTTTCCTTTTAT+CGG | - | chr8_1:15791718-15791737 | Msa1181410:intron | 20.0% |
| !!! | TTAGTAGCTAAAATTTTTGT+TGG | - | chr8_1:15791747-15791766 | Msa1181410:intron | 20.0% |
| !!! | TTTCTTTTGTTTGTGAATAT+AGG | - | chr8_1:15791855-15791874 | Msa1181410:intron | 20.0% |
| !!! | TTCTTTTGTTTGTGAATATA+GGG | - | chr8_1:15791856-15791875 | Msa1181410:intron | 20.0% |
| !!! | TTTGTTTCTTTCCAATTTTT+AGG | + | chr8_1:15792377-15792396 | Msa1181400:intron | 20.0% |
| !! | AAACAAGTTATATCAGAAAT+TGG | - | chr8_1:15792394-15792413 | Msa1181410:intron | 20.0% |
| !! | TTTAGGCATAATAGAAATTT+AGG | - | chr8_1:15792677-15792696 | Msa1181410:intron | 20.0% |
| !! | CATGAAATATTTCTCAAATA+CGG | - | chr8_1:15792745-15792764 | Msa1181410:intron | 20.0% |
| !! | ATGAAATATTTCTCAAATAC+GGG | - | chr8_1:15792746-15792765 | Msa1181410:intron | 20.0% |
| !!! | TATTTGATTTAAGTTCAACA+TGG | - | chr8_1:15792779-15792798 | Msa1181410:intron | 20.0% |
| !!! | ATTTGATTTAAGTTCAACAT+GGG | - | chr8_1:15792780-15792799 | Msa1181410:intron | 20.0% |
| !! | ATTTGAGAAATATACAACTT+TGG | + | chr8_1:15792829-15792848 | Msa1181400:intron | 20.0% |
| !! | TTCACTTGAACAGATATTTT+GGG | + | chr8_1:15786444-15786463 | Msa1181400:intron | 25.0% |
| !! | AACTTTTCTTTTACATACTG+AGG | - | chr8_1:15786504-15786523 | Msa1181410:three_prime_UTR | 25.0% |
| !! | ACTTTTCTTTTACATACTGA+GGG | - | chr8_1:15786505-15786524 | Msa1181410:three_prime_UTR | 25.0% |
| ! | ATCTGTTTATGTAGTGTTTA+TGG | - | chr8_1:15786533-15786552 | Msa1181410:intron | 25.0% |
| ! | TCTGTTTATGTAGTGTTTAT+GGG | - | chr8_1:15786534-15786553 | Msa1181410:intron | 25.0% |
| !! | TGCAATATATTGTTTCCTTT+TGG | - | chr8_1:15786722-15786741 | Msa1181410:intron | 25.0% |
| ! | TTGGATTATAGAATACCAAA+AGG | + | chr8_1:15786740-15786759 | Msa1181400:intron | 25.0% |
| ! | TTCTATAATCCAAATGTGTT+TGG | - | chr8_1:15786747-15786766 | Msa1181410:intron | 25.0% |
| ! | TCTATAATCCAAATGTGTTT+GGG | - | chr8_1:15786748-15786767 | Msa1181410:intron | 25.0% |
| ! | TAATTGACTAACGTTAGATT+CGG | + | chr8_1:15786928-15786947 | Msa1181400:intron | 25.0% |
| ! | ATACACTATGTAAACATGTT+TGG | + | chr8_1:15787113-15787132 | Msa1181400:intron | 25.0% |
| !!! | TATAATTTCTAGCATTCATG+TGG | - | chr8_1:15787135-15787154 | Msa1181410:three_prime_UTR | 25.0% |
| ! | TTGAAATTGTTATAGTGTTG+TGG | + | chr8_1:15787343-15787362 | Msa1181400:intron | 25.0% |
| ! | AAAAAAGCTGAAATAGTGTT+GGG | + | chr8_1:15787527-15787546 | Msa1181400:intron | 25.0% |
| !! | TGGATTTCATTCTATCTTTT+TGG | - | chr8_1:15788264-15788283 | Msa1181410:intron | 25.0% |
| ! | AGCTTAGTTAAGTGTATATA+GGG | + | chr8_1:15788311-15788330 | Msa1181400:intron | 25.0% |
| ! | AAGCTTAGTTAAGTGTATAT+AGG | + | chr8_1:15788312-15788331 | Msa1181400:intron | 25.0% |
| !! | TGTGATTTTGAATTGTTACT+TGG | - | chr8_1:15788378-15788397 | Msa1181410:intron | 25.0% |
| !!! | TTTGTCTATGGTATGTTTTT+TGG | - | chr8_1:15788818-15788837 | Msa1181410:intron | 25.0% |
| !! | TTTAGAGCTGAAATAAGTAT+TGG | - | chr8_1:15789228-15789247 | Msa1181410:intron | 25.0% |
| !!! | TTTCAATTGGTCTTTGTATT+TGG | - | chr8_1:15789427-15789446 | Msa1181410:intron | 25.0% |
| ! | ATTTGTACCTTCTTTCAATT+TGG | - | chr8_1:15789471-15789490 | Msa1181410:three_prime_UTR | 25.0% |
| ! | GTTGTAGATTATAGCATAAT+CGG | + | chr8_1:15789679-15789698 | Msa1181400:intron | 25.0% |
| ! | GACATCTTCTTATAGTTTAA+TGG | - | chr8_1:15789730-15789749 | Msa1181410:intron | 25.0% |
| ! | TAAGATTGATACAAAGTCAA+TGG | + | chr8_1:15789835-15789854 | Msa1181400:intron | 25.0% |
| !!! | GGTTTTATATGTTTTCATAC+TGG | - | chr8_1:15790079-15790098 | Msa1181410:intron | 25.0% |
| ! | CACTATAACAACATAATGAA+AGG | + | chr8_1:15790140-15790159 | Msa1181400:intron | 25.0% |
| ! | CTTTCATTATGTTGTTATAG+TGG | - | chr8_1:15790138-15790157 | Msa1181410:intron | 25.0% |
| ! | TAGTAACTAAATCAACTTGA+TGG | + | chr8_1:15790210-15790229 | Msa1181400:intron | 25.0% |
| ! | TAAATAACAAACTTCAGCTT+TGG | + | chr8_1:15790272-15790291 | Msa1181400:intron | 25.0% |
| !! | TCCTTTAACTGACATTTTTA+TGG | - | chr8_1:15790329-15790348 | Msa1181410:intron | 25.0% |
| ! | ACCATAAAAATGTCAGTTAA+AGG | + | chr8_1:15790333-15790352 | Msa1181400:intron | 25.0% |
| ! | CATGAAACAATAATCGAATT+AGG | + | chr8_1:15790357-15790376 | Msa1181400:intron | 25.0% |
| !!! | TATTATTCTGGTTTTGACTT+TGG | - | chr8_1:15790440-15790459 | Msa1181410:intron | 25.0% |
| ! | CTTCATTGATCTTATTAGAT+TGG | - | chr8_1:15790540-15790559 | Msa1181410:intron | 25.0% |
| ! | TGTTTATTATGATGTGGTTT+AGG | - | chr8_1:15790582-15790601 | Msa1181410:intron | 25.0% |
| !! | ATAGTGATTTATTGGTCTAT+GGG | - | chr8_1:15790605-15790624 | Msa1181410:intron | 25.0% |
| !! | TCTAAAATCTTATTCATCCA+TGG | + | chr8_1:15790753-15790772 | Msa1181400:intron | 25.0% |
| ! | GAGAAAATAACAATGGAAAT+TGG | + | chr8_1:15790800-15790819 | Msa1181400:intron | 25.0% |
| !!! | CAGATTTACTCTTTGTTTTA+AGG | - | chr8_1:15790883-15790902 | Msa1181410:intron | 25.0% |
| ! | ATATGAAAACTTTGCAAACT+CGG | + | chr8_1:15790962-15790981 | Msa1181400:intron | 25.0% |
| ! | TTATTATGGACAAAATCACT+TGG | - | chr8_1:15791113-15791132 | Msa1181410:CDS | 25.0% |
| ! | TAAGTAATGACAGAGAAAAA+TGG | - | chr8_1:15791569-15791588 | Msa1181410:intron | 25.0% |
| ! | TTTCTGTGTTAATGATTGTT+TGG | + | chr8_1:15791596-15791615 | Msa1181400:intron | 25.0% |
| ! | AACACAGAAATATAATGACA+TGG | - | chr8_1:15791606-15791625 | Msa1181410:intron | 25.0% |
| ! | ATATAATGACATGGTTAATG+AGG | - | chr8_1:15791615-15791634 | Msa1181410:intron | 25.0% |
| ! | TATAATGACATGGTTAATGA+GGG | - | chr8_1:15791616-15791635 | Msa1181410:intron | 25.0% |
| !! | CAACAATTGATTCTCTTTAA+AGG | + | chr8_1:15791806-15791825 | Msa1181400:intron | 25.0% |
| ! | TCTAAACTCAATACGTTATT+GGG | + | chr8_1:15792212-15792231 | Msa1181400:intron | 25.0% |
| ! | TTCTAAACTCAATACGTTAT+TGG | + | chr8_1:15792213-15792232 | Msa1181400:intron | 25.0% |
| ! | CTATGTTTATTCTCTCAAAT+TGG | - | chr8_1:15792282-15792301 | Msa1181410:intron | 25.0% |
| ! | CATTGTTTATTCTCTCAAAT+TGG | - | chr8_1:15792312-15792331 | Msa1181410:intron | 25.0% |
| !!! | ATTTTTAGGTAAGTGTCTTT+AGG | + | chr8_1:15792363-15792382 | Msa1181400:intron | 25.0% |
| ! | AAAGACACTTACCTAAAAAT+TGG | - | chr8_1:15792363-15792382 | Msa1181410:intron | 25.0% |
| !! | GTAATTGTTATGATGCATTT+TGG | - | chr8_1:15792416-15792435 | Msa1181410:intron | 25.0% |
| ! | AATGAAGACAAGGTTTAATT+GGG | - | chr8_1:15792469-15792488 | Msa1181410:intron | 25.0% |
| !! | AAAAAGTTGATTGTAATTGC+AGG | - | chr8_1:15792569-15792588 | Msa1181410:intron | 25.0% |
| ! | CTGCAAATAAGTAGTTATTT+AGG | - | chr8_1:15792660-15792679 | Msa1181410:intron | 25.0% |
| !! | TTTGATTTAAGTTCAACATG+GGG | - | chr8_1:15792781-15792800 | Msa1181410:intron | 25.0% |
| ! | AGTTGTATATTTCTCAAATC+TGG | - | chr8_1:15792830-15792849 | Msa1181410:intron | 25.0% |
| ! | GTTGTATATTTCTCAAATCT+GGG | - | chr8_1:15792831-15792850 | Msa1181410:intron | 25.0% |
| ACAATAAAGTAGTTCAAGCA+TGG | + | chr8_1:15786296-15786315 | Msa1181400:intron | 30.0% | |
| ! | ACTTTATTGTTTCTTGCAGT+TGG | - | chr8_1:15786306-15786325 | Msa1181410:three_prime_UTR | 30.0% |
| TATAAATACCAACTGCAACT+TGG | - | chr8_1:15786363-15786382 | Msa1181410:three_prime_UTR | 30.0% | |
| TGGGAATCAAACAGATAAAT+GGG | + | chr8_1:15786425-15786444 | Msa1181400:intron | 30.0% | |
| TTGGGAATCAAACAGATAAA+TGG | + | chr8_1:15786426-15786445 | Msa1181400:intron | 30.0% | |
| ! | CTTCACTTGAACAGATATTT+TGG | + | chr8_1:15786445-15786464 | Msa1181400:intron | 30.0% |
| CTATAATCCAAATGTGTTTG+GGG | - | chr8_1:15786749-15786768 | Msa1181410:intron | 30.0% | |
| ! | TATTTTTCCCCAAACACATT+TGG | + | chr8_1:15786759-15786778 | Msa1181400:intron | 30.0% |
| ! | GTTAGTCTGACATATCTAAT+TGG | - | chr8_1:15786823-15786842 | Msa1181410:intron | 30.0% |
| ! | TGTCGTGTATGTATTTGTTA+GGG | + | chr8_1:15786988-15787007 | Msa1181400:intron | 30.0% |
| ATGTCGTGTATGTATTTGTT+AGG | + | chr8_1:15786989-15787008 | Msa1181400:intron | 30.0% | |
| CTGAAAATGACATTTCTTAG+AGG | + | chr8_1:15787431-15787450 | Msa1181400:intron | 30.0% | |
| !!! | CTCTAAGAAATGTCATTTTC+AGG | - | chr8_1:15787429-15787448 | Msa1181410:intron | 30.0% |
| ! | AGTGTTGGGCTTAATATTAT+TGG | + | chr8_1:15787500-15787519 | Msa1181400:intron | 30.0% |
| GAAAAAAGCTGAAATAGTGT+TGG | + | chr8_1:15787528-15787547 | Msa1181400:intron | 30.0% | |
| !! | TTTAGTTCTGTGATTCAGAT+AGG | + | chr8_1:15787847-15787866 | Msa1181400:intron | 30.0% |
| !!! | AATCACTGCAAATCGTTTTT+TGG | - | chr8_1:15788055-15788074 | Msa1181410:intron | 30.0% |
| GTTGAAGAAGATGAACAAAA+TGG | - | chr8_1:15788126-15788145 | Msa1181410:intron | 30.0% | |
| TATATAGGGAGTTAACAAAC+GGG | + | chr8_1:15788297-15788316 | Msa1181400:intron | 30.0% | |
| GTATATAGGGAGTTAACAAA+CGG | + | chr8_1:15788298-15788317 | Msa1181400:intron | 30.0% | |
| !! | TATCATCTGTATTTGGGTTT+TGG | - | chr8_1:15788435-15788454 | Msa1181410:intron | 30.0% |
| CACTTATTGATATGTCTTCA+AGG | - | chr8_1:15788489-15788508 | Msa1181410:intron | 30.0% | |
| !! | TTTTTGTTTCACTTTTCCCA+TGG | - | chr8_1:15789062-15789081 | Msa1181410:intron | 30.0% |
| !! | TTGTTGTTTGAGGTTTGATT+TGG | - | chr8_1:15789094-15789113 | Msa1181410:intron | 30.0% |
| ! | TGTTGTTTGAGGTTTGATTT+GGG | - | chr8_1:15789095-15789114 | Msa1181410:intron | 30.0% |
| !! | GTATTGGTGTCAACTTAATT+AGG | - | chr8_1:15789244-15789263 | Msa1181410:intron | 30.0% |
| !! | GCACTCTTATTTCAATGTTT+TGG | - | chr8_1:15789289-15789308 | Msa1181410:intron | 30.0% |
| ! | TATTTGAGATAATGACCATG+AGG | - | chr8_1:15789350-15789369 | Msa1181410:intron | 30.0% |
| TAAGAAATGAAGTTACCTCA+TGG | + | chr8_1:15789368-15789387 | Msa1181400:intron | 30.0% | |
| TGATTCTCCTTTCTTTCAAT+TGG | - | chr8_1:15789414-15789433 | Msa1181410:intron | 30.0% | |
| ACAAAGACCAATTGAAAGAA+AGG | + | chr8_1:15789424-15789443 | Msa1181400:intron | 30.0% | |
| !! | ATTTTCTTGCTGATTGTGTA+AGG | - | chr8_1:15789543-15789562 | Msa1181410:intron | 30.0% |
| AAACTATAAGAAGATGTCGT+GGG | + | chr8_1:15789728-15789747 | Msa1181400:intron | 30.0% | |
| TAAACTATAAGAAGATGTCG+TGG | + | chr8_1:15789729-15789748 | Msa1181400:intron | 30.0% | |
| TTGATACAAAGTCAATGGAA+GGG | + | chr8_1:15789830-15789849 | Msa1181400:intron | 30.0% | |
| ATTGATACAAAGTCAATGGA+AGG | + | chr8_1:15789831-15789850 | Msa1181400:intron | 30.0% | |
| ! | TTTCTTGGTTTGAATTCTTG+AGG | - | chr8_1:15790411-15790430 | Msa1181410:intron | 30.0% |
| ! | GGTTTAGGATAGTGATTTAT+TGG | - | chr8_1:15790597-15790616 | Msa1181410:intron | 30.0% |
| ! | GATAGTGATTTATTGGTCTA+TGG | - | chr8_1:15790604-15790623 | Msa1181410:intron | 30.0% |
| TAACGGGAAACAACTTATAT+GGG | + | chr8_1:15790682-15790701 | Msa1181400:intron | 30.0% | |
| ! | ATAACGGGAAACAACTTATA+TGG | + | chr8_1:15790683-15790702 | Msa1181400:intron | 30.0% |
| ! | ATAAGTTGTTTCCCGTTATT+AGG | - | chr8_1:15790684-15790703 | Msa1181410:intron | 30.0% |
| ! | TTTTATGACTATGTCAACCA+TGG | - | chr8_1:15790733-15790752 | Msa1181410:intron | 30.0% |
| AGTCACAGAGAAAATAACAA+TGG | + | chr8_1:15790807-15790826 | Msa1181400:intron | 30.0% | |
| TTGCTTATGTCTATGTTGTT+AGG | + | chr8_1:15790988-15791007 | Msa1181400:intron | 30.0% | |
| TAAGAAAACTTTGCAAACTC+TGG | + | chr8_1:15791084-15791103 | Msa1181400:intron | 30.0% | |
| TCGAAATTGCTTACTCTATA+TGG | - | chr8_1:15791209-15791228 | Msa1181410:CDS | 30.0% | |
| !! | GAATTTCAAAATGATAGTGG+AGG | + | chr8_1:15791387-15791406 | Msa1181400:intron | 30.0% |
| !!! | TTTTTTTAGGGCTAAAGTGT+TGG | + | chr8_1:15791534-15791553 | Msa1181400:intron | 30.0% |
| TACTAAGTAGAACCGATAAA+AGG | + | chr8_1:15791733-15791752 | Msa1181400:intron | 30.0% | |
| ! | TTGGAAAGAAAAGCACAATT+GGG | - | chr8_1:15791766-15791785 | Msa1181410:intron | 30.0% |
| ! | AGAGAATCAATTGTTGTTCT+TGG | - | chr8_1:15791810-15791829 | Msa1181410:intron | 30.0% |
| AAATATGGCAAACTTCACAT+AGG | + | chr8_1:15792181-15792200 | Msa1181400:intron | 30.0% | |
| ! | TATTGGGTGCATCTAAAATA+TGG | + | chr8_1:15792196-15792215 | Msa1181400:intron | 30.0% |
| CAATGAAGACAAGGTTTAAT+TGG | - | chr8_1:15792468-15792487 | Msa1181410:intron | 30.0% | |
| TGCAACATGTTTCATTTCAT+AGG | - | chr8_1:15792607-15792626 | Msa1181410:intron | 30.0% | |
| TGTTTCATTTCATAGGTTCA+TGG | - | chr8_1:15792614-15792633 | Msa1181410:intron | 30.0% | |
| AAATATTTCTCAAATACGGG+CGG | - | chr8_1:15792749-15792768 | Msa1181410:intron | 30.0% | |
| ! | TTGATTTAAGTTCAACATGG+GGG | - | chr8_1:15792782-15792801 | Msa1181410:intron | 30.0% |
| ! | AGGGTAGTTTGGAACATATA+TGG | + | chr8_1:15786242-15786261 | Msa1181400:intron | 35.0% |
| AGATATGTCAGACTAACAGA+AGG | + | chr8_1:15786820-15786839 | Msa1181400:intron | 35.0% | |
| ! | TCGTGTATGTATTTGTTAGG+GGG | + | chr8_1:15786986-15787005 | Msa1181400:intron | 35.0% |
| ! | GTCGTGTATGTATTTGTTAG+GGG | + | chr8_1:15786987-15787006 | Msa1181400:intron | 35.0% |
| AGAATTGTGACACATTGGAT+TGG | + | chr8_1:15787255-15787274 | Msa1181400:intron | 35.0% | |
| TGCTTAGAATTGTGACACAT+TGG | + | chr8_1:15787260-15787279 | Msa1181400:intron | 35.0% | |
| ! | AGAAGTGATGATTTGGCATT+GGG | + | chr8_1:15787283-15787302 | Msa1181400:intron | 35.0% |
| !! | GCTTTTGAGAAGTGATGATT+TGG | + | chr8_1:15787290-15787309 | Msa1181400:intron | 35.0% |
| TGATGCTTCAGAAAAGAGAT+GGG | + | chr8_1:15787663-15787682 | Msa1181400:intron | 35.0% | |
| ! | TGAAGCATCAGCAAGTAAAA+TGG | - | chr8_1:15787673-15787692 | Msa1181410:intron | 35.0% |
| GATTCAGATAGGAGAAATGT+TGG | + | chr8_1:15787836-15787855 | Msa1181400:intron | 35.0% | |
| TGATTACAGTGAGCGAATTT+GGG | + | chr8_1:15787891-15787910 | Msa1181400:intron | 35.0% | |
| TTGATTACAGTGAGCGAATT+TGG | + | chr8_1:15787892-15787911 | Msa1181400:intron | 35.0% | |
| AGTGAATCCACAGTAAACTT+GGG | + | chr8_1:15787958-15787977 | Msa1181400:intron | 35.0% | |
| !! | TGATTTTGTGGTTGATTCAG+CGG | - | chr8_1:15788090-15788109 | Msa1181410:intron | 35.0% |
| ! | CAAGGTTTGCTTTAAGTGTT+TGG | - | chr8_1:15788507-15788526 | Msa1181410:intron | 35.0% |
| ! | AGGGCTTTAATCATGTTGTT+TGG | - | chr8_1:15788648-15788667 | Msa1181410:intron | 35.0% |
| TTAGCGTGTAGATTTGTCTA+TGG | - | chr8_1:15788806-15788825 | Msa1181410:intron | 35.0% | |
| !!! | TTTTTGGAGCATGTTTCTAG+AGG | - | chr8_1:15788834-15788853 | Msa1181410:intron | 35.0% |
| !!! | TTTTGGAGCATGTTTCTAGA+GGG | - | chr8_1:15788835-15788854 | Msa1181410:intron | 35.0% |
| !! | TTTCACTTTTCCCATGGATT+AGG | - | chr8_1:15789068-15789087 | Msa1181410:intron | 35.0% |
| ACAACAACATCCTAATCCAT+GGG | + | chr8_1:15789081-15789100 | Msa1181400:intron | 35.0% | |
| AACAACAACATCCTAATCCA+TGG | + | chr8_1:15789082-15789101 | Msa1181400:intron | 35.0% | |
| !! | GATTAGGATGTTGTTGTTTG+AGG | - | chr8_1:15789084-15789103 | Msa1181410:intron | 35.0% |
| !! | TTGAGGTTTGATTTGGGATA+TGG | - | chr8_1:15789101-15789120 | Msa1181410:intron | 35.0% |
| GTCAATGGAAGGGAAAAAAT+AGG | + | chr8_1:15789820-15789839 | Msa1181400:intron | 35.0% | |
| GTTTCAGTAAGTCTTTAGTG+TGG | - | chr8_1:15789940-15789959 | Msa1181410:intron | 35.0% | |
| !!! | ACTTTGGTTTTGCAGACATT+GGG | - | chr8_1:15790456-15790475 | Msa1181410:intron | 35.0% |
| ! | ATCTTATTAGATTGGTCCCT+GGG | - | chr8_1:15790548-15790567 | Msa1181410:intron | 35.0% |
| AAACAAAACAACACAACCCA+GGG | + | chr8_1:15790567-15790586 | Msa1181400:intron | 35.0% | |
| TAAACAAAACAACACAACCC+AGG | + | chr8_1:15790568-15790587 | Msa1181400:intron | 35.0% | |
| GTGACTCAACAATATTTCGA+TGG | - | chr8_1:15790821-15790840 | Msa1181410:intron | 35.0% | |
| ATACACATGCCAAACTTACA+TGG | + | chr8_1:15790863-15790882 | Msa1181400:intron | 35.0% | |
| TAGATGCATGTGAGAAAGAA+AGG | + | chr8_1:15790917-15790936 | Msa1181400:intron | 35.0% | |
| ! | CATTTTCTTACTTGCATGTG+AGG | + | chr8_1:15791035-15791054 | Msa1181400:intron | 35.0% |
| ATGGACAAAATCACTTGGAA+AGG | - | chr8_1:15791118-15791137 | Msa1181410:CDS | 35.0% | |
| AATCCCTTGCAAACTTGATT+AGG | - | chr8_1:15791167-15791186 | Msa1181410:CDS | 35.0% | |
| AAGCCTAATCAAGTTTGCAA+GGG | + | chr8_1:15791173-15791192 | Msa1181400:intron | 35.0% | |
| TAAGCCTAATCAAGTTTGCA+AGG | + | chr8_1:15791174-15791193 | Msa1181400:intron | 35.0% | |
| CTTCATTTACGCTTACTCAT+TGG | - | chr8_1:15791241-15791260 | Msa1181410:CDS | 35.0% | |
| ! | GTGTTGGATCTTATTTCGAT+TGG | + | chr8_1:15791518-15791537 | Msa1181400:intron | 35.0% |
| ATGGTTAATGAGGGTAAACT+AGG | - | chr8_1:15791625-15791644 | Msa1181410:intron | 35.0% | |
| ! | GTTGGAAAGAAAAGCACAAT+TGG | - | chr8_1:15791765-15791784 | Msa1181410:intron | 35.0% |
| !!! | GTTCTTGGTGCTTTTTTCTA+AGG | - | chr8_1:15791825-15791844 | Msa1181410:intron | 35.0% |
| TTGGTATGAAGATCTCTCAA+TGG | + | chr8_1:15791882-15791901 | Msa1181400:intron | 35.0% | |
| !!! | TTTGTTTTGGATCATAGCAG+TGG | + | chr8_1:15791933-15791952 | Msa1181400:intron | 35.0% |
| ACTGCTATGATCCAAAACAA+AGG | - | chr8_1:15791932-15791951 | Msa1181410:intron | 35.0% | |
| CTGCTATGATCCAAAACAAA+GGG | - | chr8_1:15791933-15791952 | Msa1181410:intron | 35.0% | |
| TGCTATGATCCAAAACAAAG+GGG | - | chr8_1:15791934-15791953 | Msa1181410:intron | 35.0% | |
| AAACTGAACACACCAATAAG+TGG | + | chr8_1:15791993-15792012 | Msa1181400:intron | 35.0% | |
| !!! | TGCATTTTGGTTAGTGATGT+TGG | - | chr8_1:15792429-15792448 | Msa1181410:intron | 35.0% |
| ! | ATGTTGGTGAAAACGACTTA+TGG | - | chr8_1:15792445-15792464 | Msa1181410:intron | 35.0% |
| ! | AGTTTTTGTGATGAACTCAG+TGG | + | chr8_1:15792508-15792527 | Msa1181400:intron | 35.0% |
| TGATTGTAATTGCAGGAACT+AGG | - | chr8_1:15792576-15792595 | Msa1181410:intron | 35.0% | |
| ! | TGATTTAAGTTCAACATGGG+GGG | - | chr8_1:15792783-15792802 | Msa1181410:intron | 35.0% |
| ! | ATCTGGGAGCTTTATGTATT+TGG | - | chr8_1:15792847-15792866 | Msa1181410:intron | 35.0% |
| AAATACGTGGTAGGGTAGTT+TGG | + | chr8_1:15786253-15786272 | Msa1181400:intron | 40.0% | |
| GCTTAGTGAAATACGTGGTA+GGG | + | chr8_1:15786261-15786280 | Msa1181400:intron | 40.0% | |
| AGCTTAGTGAAATACGTGGT+AGG | + | chr8_1:15786262-15786281 | Msa1181400:intron | 40.0% | |
| ACCACGTATTTCACTAAGCT+AGG | - | chr8_1:15786262-15786281 | Msa1181410:three_prime_UTR | 40.0% | |
| TCCTAGCTTAGTGAAATACG+TGG | + | chr8_1:15786266-15786285 | Msa1181400:intron | 40.0% | |
| ATAAAGGTCCAAGTTGCAGT+TGG | + | chr8_1:15786374-15786393 | Msa1181400:intron | 40.0% | |
| TAGATTTGTCGATGTCGTGT+CGG | - | chr8_1:15787063-15787082 | Msa1181410:intron | 40.0% | |
| TCTAGCATTCATGTGGATCT+TGG | - | chr8_1:15787142-15787161 | Msa1181410:three_prime_UTR | 40.0% | |
| ! | ATTGTGACACATTGGATTGG+AGG | + | chr8_1:15787252-15787271 | Msa1181400:intron | 40.0% |
| ! | GAGAAGTGATGATTTGGCAT+TGG | + | chr8_1:15787284-15787303 | Msa1181400:intron | 40.0% |
| ! | TAGTGTTGGGTTTGAGTGTT+GGG | + | chr8_1:15787514-15787533 | Msa1181400:intron | 40.0% |
| ! | ATAGTGTTGGGTTTGAGTGT+TGG | + | chr8_1:15787515-15787534 | Msa1181400:intron | 40.0% |
| ! | TCATAGCTTGCAATCAGGTT+GGG | + | chr8_1:15787618-15787637 | Msa1181400:intron | 40.0% |
| ! | TTGTCTCATAGCTTGCAATC+AGG | + | chr8_1:15787623-15787642 | Msa1181400:intron | 40.0% |
| CTGATGCTTCAGAAAAGAGA+TGG | + | chr8_1:15787664-15787683 | Msa1181400:intron | 40.0% | |
| AGATAGGAGAAATGTTGGAG+AGG | + | chr8_1:15787831-15787850 | Msa1181400:intron | 40.0% | |
| TTGACGTATGACGACGATTT+CGG | + | chr8_1:15787933-15787952 | Msa1181400:intron | 40.0% | |
| GTGAATCCACAGTAAACTTG+GGG | + | chr8_1:15787957-15787976 | Msa1181400:intron | 40.0% | |
| CAGTGAATCCACAGTAAACT+TGG | + | chr8_1:15787959-15787978 | Msa1181400:intron | 40.0% | |
| TTTCGACGTGCTTGAATGAT+TGG | + | chr8_1:15787998-15788017 | Msa1181400:intron | 40.0% | |
| AATCATTCAAGCACGTCGAA+AGG | - | chr8_1:15787997-15788016 | Msa1181410:intron | 40.0% | |
| ! | TCAAACGACTCAAGTTGTGT+TGG | + | chr8_1:15788163-15788182 | Msa1181400:intron | 40.0% |
| ACACAACTTGAGTCGTTTGA+AGG | - | chr8_1:15788163-15788182 | Msa1181410:intron | 40.0% | |
| ! | TTTGGGATATGGCAAGTCAA+TGG | - | chr8_1:15789112-15789131 | Msa1181410:intron | 40.0% |
| TTGGGATATGGCAAGTCAAT+GGG | - | chr8_1:15789113-15789132 | Msa1181410:intron | 40.0% | |
| AATGGGACAATTCAACATGC+AGG | - | chr8_1:15789130-15789149 | Msa1181410:intron | 40.0% | |
| !! | ACGCAGTGGTCTTGTTTAAA+AGG | + | chr8_1:15789639-15789658 | Msa1181400:intron | 40.0% |
| TTTAAAAGACTTCGACGCAG+TGG | + | chr8_1:15789653-15789672 | Msa1181400:intron | 40.0% | |
| AGTAAGTCTTTAGTGTGGCA+GGG | - | chr8_1:15789945-15789964 | Msa1181410:intron | 40.0% | |
| !!! | GACTTTGGTTTTGCAGACAT+TGG | - | chr8_1:15790455-15790474 | Msa1181410:intron | 40.0% |
| !!! | CTTTGGTTTTGCAGACATTG+GGG | - | chr8_1:15790457-15790476 | Msa1181410:intron | 40.0% |
| !!! | TTTGGTTTTGCAGACATTGG+GGG | - | chr8_1:15790458-15790477 | Msa1181410:intron | 40.0% |
| ! | GATCTTATTAGATTGGTCCC+TGG | - | chr8_1:15790547-15790566 | Msa1181410:intron | 40.0% |
| GTCTACGTTCCATGTAAGTT+TGG | - | chr8_1:15790851-15790870 | Msa1181410:intron | 40.0% | |
| AATCACTTGGAAAGGATTGC+AGG | - | chr8_1:15791126-15791145 | Msa1181410:CDS | 40.0% | |
| ! | GATGTCAGCATGTCTTTTAG+TGG | + | chr8_1:15791420-15791439 | Msa1181400:intron | 40.0% |
| AAGCACAATTGGGCAATTCT+TGG | - | chr8_1:15791776-15791795 | Msa1181410:intron | 40.0% | |
| AGATCTTCATACCAAGAGCT+TGG | - | chr8_1:15791887-15791906 | Msa1181410:intron | 40.0% | |
| TTGTCGTAAATCCAAGCTCT+TGG | + | chr8_1:15791901-15791920 | Msa1181400:intron | 40.0% | |
| !! | CAATCTTAGCCCCTTTGTTT+TGG | + | chr8_1:15791946-15791965 | Msa1181400:intron | 40.0% |
| CAAAACAAAGGGGCTAAGAT+TGG | - | chr8_1:15791944-15791963 | Msa1181410:intron | 40.0% | |
| ! | ATTGGTACTATGTCACTTGC+TGG | - | chr8_1:15791962-15791981 | Msa1181410:intron | 40.0% |
| GACTTATGGCAATGAAGACA+AGG | - | chr8_1:15792459-15792478 | Msa1181410:intron | 40.0% | |
| !! | ATATGTCAGGTTGAGCGACA+TGG | + | chr8_1:15786956-15786975 | Msa1181400:intron | 45.0% |
| AGATTTGTCGATGTCGTGTC+GGG | - | chr8_1:15787064-15787083 | Msa1181410:intron | 45.0% | |
| ! | TGCTTTTGAGCGTGAGAACA+GGG | + | chr8_1:15787590-15787609 | Msa1181400:intron | 45.0% |
| !! | TTGCTTTTGAGCGTGAGAAC+AGG | + | chr8_1:15787591-15787610 | Msa1181400:intron | 45.0% |
| ! | CTCATAGCTTGCAATCAGGT+TGG | + | chr8_1:15787619-15787638 | Msa1181400:intron | 45.0% |
| TGCTTCAGAAAAGAGATGGG+TGG | + | chr8_1:15787660-15787679 | Msa1181400:intron | 45.0% | |
| GATTGATGAGAGAGAGCGAA+GGG | + | chr8_1:15787765-15787784 | Msa1181400:intron | 45.0% | |
| TGATTGATGAGAGAGAGCGA+AGG | + | chr8_1:15787766-15787785 | Msa1181400:intron | 45.0% | |
| AGGCAAATGAGAGTGGAAAG+AGG | + | chr8_1:15787811-15787830 | Msa1181400:intron | 45.0% | |
| AATTTGGGAGAGAGGGAGAA+GGG | + | chr8_1:15787876-15787895 | Msa1181400:intron | 45.0% | |
| GTCAAACCCCAAGTTTACTG+TGG | - | chr8_1:15787948-15787967 | Msa1181410:intron | 45.0% | |
| ! | AACGACTCAAGTTGTGTTGG+TGG | + | chr8_1:15788160-15788179 | Msa1181400:intron | 45.0% |
| TGTGAAGTTGAGCACTCACA+TGG | - | chr8_1:15789780-15789799 | Msa1181410:three_prime_UTR | 45.0% | |
| CAGTAAGTCTTTAGTGTGGC+AGG | - | chr8_1:15789944-15789963 | Msa1181410:intron | 45.0% | |
| !! | TATATATATATATATAAACA+GGG | + | chr8_1:15786568-15786587 | Msa1181400:intron | 5.0% |
| !! | ATATATATATATATATAAAC+AGG | + | chr8_1:15786569-15786588 | Msa1181400:intron | 5.0% |
| !! | TCTTATTATTATTATTATTA+TGG | - | chr8_1:15791099-15791118 | Msa1181410:intron | 5.0% |
| ! | AGGGGGTGTGAGAATATGTC+AGG | + | chr8_1:15786969-15786988 | Msa1181400:intron | 50.0% |
| GATTTGTCGATGTCGTGTCG+GGG | - | chr8_1:15787065-15787084 | Msa1181410:intron | 50.0% | |
| !! | TAGCTTGCAATCAGGTTGGG+TGG | + | chr8_1:15787615-15787634 | Msa1181400:intron | 50.0% |
| GTTGGAGAGGCAAATGAGAG+TGG | + | chr8_1:15787818-15787837 | Msa1181400:intron | 50.0% | |
| GAATTTGGGAGAGAGGGAGA+AGG | + | chr8_1:15787877-15787896 | Msa1181400:intron | 50.0% | |
| GTGAGCGAATTTGGGAGAGA+GGG | + | chr8_1:15787883-15787902 | Msa1181400:intron | 50.0% | |
| AGTGAGCGAATTTGGGAGAG+AGG | + | chr8_1:15787884-15787903 | Msa1181400:intron | 50.0% | |
| GACGACGATTTCGGATTCGA+CGG | + | chr8_1:15787924-15787943 | Msa1181400:intron | 50.0% | |
| CTGAATCATCCTTGCTGCTC+TGG | - | chr8_1:15790387-15790406 | Msa1181410:intron | 50.0% | |
| CCAAGAAAACCAGAGCAGCA+AGG | + | chr8_1:15790399-15790418 | Msa1181400:intron | 50.0% | |
| !!! | CCTTGCTGCTCTGGTTTTCT+TGG | - | chr8_1:15790396-15790415 | Msa1181410:intron | 50.0% |
| ! | GGTACTATGTCACTTGCTGG+AGG | - | chr8_1:15791965-15791984 | Msa1181410:intron | 50.0% |
| TTGCTGGAGGCTCCACTTAT+TGG | - | chr8_1:15791978-15791997 | Msa1181410:intron | 50.0% | |
| AGTTCAACATGGGGGGCTAT+AGG | - | chr8_1:15792790-15792809 | Msa1181410:intron | 50.0% | |
| ACATGGGGGGCTATAGGTAT+TGG | - | chr8_1:15792796-15792815 | Msa1181410:intron | 50.0% | |
| GACGATTTCGGATTCGACGG+CGG | + | chr8_1:15787921-15787940 | Msa1181400:intron | 55.0% | |
| ! | GTTTTGCAGACATTGGGGGC+TGG | - | chr8_1:15790462-15790481 | Msa1181410:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 15786235 | 15792893 | 15786235 | ID=Msa1181410;Name=Msa1181410 |
| chr8_1 | mRNA | 15786235 | 15792893 | 15786235 | ID=Msa1181410-mRNA-1;Parent=Msa1181410;Name=Msa1181410-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.88|0.8|0.9|0.22|0.2|10|683|84 |
| chr8_1 | exon | 15786235 | 15786537 | 15786235 | ID=Msa1181410-mRNA-1:exon:6006;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15787129 | 15787251 | 15787129 | ID=Msa1181410-mRNA-1:exon:6005;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15789429 | 15789492 | 15789429 | ID=Msa1181410-mRNA-1:exon:6004;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15789757 | 15789813 | 15789757 | ID=Msa1181410-mRNA-1:exon:6003;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15789977 | 15790038 | 15789977 | ID=Msa1181410-mRNA-1:exon:6002;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15790149 | 15790164 | 15790149 | ID=Msa1181410-mRNA-1:exon:6001;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15790265 | 15790311 | 15790265 | ID=Msa1181410-mRNA-1:exon:6000;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15790944 | 15791018 | 15790944 | ID=Msa1181410-mRNA-1:exon:5999;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15791110 | 15791268 | 15791110 | ID=Msa1181410-mRNA-1:exon:5998;Parent=Msa1181410-mRNA-1 |
| chr8_1 | exon | 15792862 | 15792893 | 15792862 | ID=Msa1181410-mRNA-1:exon:5997;Parent=Msa1181410-mRNA-1 |
| chr8_1 | CDS | 15792862 | 15792893 | 15792862 | ID=Msa1181410-mRNA-1:cds;Parent=Msa1181410-mRNA-1 |
| chr8_1 | CDS | 15791110 | 15791268 | 15791110 | ID=Msa1181410-mRNA-1:cds;Parent=Msa1181410-mRNA-1 |
| chr8_1 | CDS | 15790955 | 15791018 | 15790955 | ID=Msa1181410-mRNA-1:cds;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15790944 | 15790954 | 15790944 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15790265 | 15790311 | 15790265 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15790149 | 15790164 | 15790149 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15789977 | 15790038 | 15789977 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15789757 | 15789813 | 15789757 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15789429 | 15789492 | 15789429 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15787129 | 15787251 | 15787129 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| chr8_1 | three_prime_UTR | 15786235 | 15786537 | 15786235 | ID=Msa1181410-mRNA-1:three_prime_utr;Parent=Msa1181410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
