AlfalfaGEDB | Msa1244900

M. sativa cultivar zhongmu-4 / Msa1244900

KEGG: K10956
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680
PFAM: PF10559.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244900	XP_003628446.1	100.000	476	0	0	1	476	1	476	0.0	964

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244900	sp\|Q54XK2\|SC61A_DICDI	73.276	464	123	1	4	467	2	464	0.0	723

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244900	A0A2K3N9A6	100.000	476	0	0	1	476	1	476	0.0	964

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0120320	Msa1244900	-0.801641	8.182906e-49	-8.615850e-47
Msa0131090	Msa1244900	-0.800054	1.725384e-48	-8.615850e-47
Msa0143280	Msa1244900	-0.811532	6.678191e-51	-8.615850e-47
Msa0180100	Msa1244900	-0.832267	1.042231e-55	-8.615850e-47
Msa0184510	Msa1244900	-0.849240	3.670266e-60	-8.615850e-47
Msa0225070	Msa1244900	-0.824277	8.807747e-54	-8.615850e-47
Msa0236940	Msa1244900	0.817918	2.570279e-52	-8.615850e-47
Msa0275560	Msa1244900	0.814682	1.360204e-51	-8.615850e-47
Msa0303920	Msa1244900	0.828890	6.989683e-55	-8.615850e-47
Msa0367590	Msa1244900	-0.804164	2.463370e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244900	MtrunA17_Chr8g0359731	100.000	476	0	0	1	476	1	476	0.0	964
Msa1244900	MtrunA17_Chr8g0372551	99.580	476	2	0	1	476	1	476	0.0	962

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1244900	AT2G34250.2	93.697	476	29	1	1	476	1	475	910
Msa1244900	AT2G34250.3	93.697	476	29	1	1	476	1	475	910
Msa1244900	AT2G34250.1	93.697	476	29	1	1	476	1	475	910
Msa1244900	AT1G29310.1	93.487	476	30	1	1	476	1	475	910
Msa1244900	AT1G29310.2	93.487	476	30	1	1	476	1	475	910
Msa1244900	AT1G78720.2	90.947	475	42	1	1	475	1	474	889
Msa1244900	AT1G78720.1	90.947	475	42	1	1	475	1	474	889
Msa1244900	AT1G78720.3	90.526	475	42	2	1	475	1	472	879

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Find 175 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGGATTGAAGTCTC+TGG	0.424950	8_2:+34384043	Msa1244900:CDS
AAAAGAGCTGGAGGATGATG+AGG	0.594915	8_2:-34383015	None:intergenic
AAAATTCTCTATTACCTAGA+GGG	0.576749	8_2:-34383800	None:intergenic
AAACTTCATTGTTAATCTGT+TGG	0.448191	8_2:+34383703	Msa1244900:CDS
AAAGAAATATTCATCATACA+TGG	0.568310	8_2:-34385068	None:intergenic
AAAGAATGCCCGTGGACAGC+AGG	0.432758	8_2:+34383480	Msa1244900:CDS
AAAGGCTATGGTTTGGGATC+TGG	0.365013	8_2:+34383079	Msa1244900:CDS
AAATGGAAGGAATCTGAATA+TGG	0.470788	8_2:+34383728	Msa1244900:CDS
AAATGGCACTTTCCTGTCCG+CGG	0.628213	8_2:-34382525	None:intergenic
AAATGGTAATGCCTGGTCAT+CGG	0.505999	8_2:+34384542	Msa1244900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCCTTTCTTCTATTTGAAT+CGG	+	chr8_2:34381721-34381740	Msa1244900:five_prime_UTR	30.0%
TCCGATTCAAATAGAAGAAA+GGG	-	chr8_2:34381725-34381744	None:intergenic	30.0%
TTCCGATTCAAATAGAAGAA+AGG	-	chr8_2:34381726-34381745	None:intergenic	30.0%
CAGGTTAAATTACTGTAATC+TGG	+	chr8_2:34382431-34382450	Msa1244900:intron	30.0%
ATTACTGTAATCTGGTAAGA+TGG	+	chr8_2:34382439-34382458	Msa1244900:exon	30.0%
TTACTGTAATCTGGTAAGAT+GGG	+	chr8_2:34382440-34382459	Msa1244900:exon	30.0%
TATATGACCTTCTCTCTAAA+TGG	-	chr8_2:34382545-34382564	None:intergenic	30.0%
AAAAATGAAGAGAGAGATCA+CGG	-	chr8_2:34382570-34382589	None:intergenic	30.0%
TAAGGAAGAATTCTCTCATT+TGG	+	chr8_2:34383208-34383227	Msa1244900:intron	30.0%
GATGCAGTGAAAACATTATA+TGG	+	chr8_2:34383230-34383249	Msa1244900:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	34381710	34385350	34381710	ID=Msa1244900;Name=Msa1244900
chr8_2	mRNA	34381710	34385350	34381710	ID=Msa1244900-mRNA-1;Parent=Msa1244900;Name=Msa1244900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=136\|1\|1\|1\|0.83\|0.71\|7\|576\|476
chr8_2	exon	34381710	34381821	34381710	ID=Msa1244900-mRNA-1:exon:10902;Parent=Msa1244900-mRNA-1
chr8_2	exon	34382434	34382801	34382434	ID=Msa1244900-mRNA-1:exon:10903;Parent=Msa1244900-mRNA-1
chr8_2	exon	34382904	34383131	34382904	ID=Msa1244900-mRNA-1:exon:10904;Parent=Msa1244900-mRNA-1
chr8_2	exon	34383237	34383591	34383237	ID=Msa1244900-mRNA-1:exon:10905;Parent=Msa1244900-mRNA-1
chr8_2	exon	34383680	34383807	34383680	ID=Msa1244900-mRNA-1:exon:10906;Parent=Msa1244900-mRNA-1
chr8_2	exon	34383964	34384099	34383964	ID=Msa1244900-mRNA-1:exon:10907;Parent=Msa1244900-mRNA-1
chr8_2	exon	34384535	34385350	34384535	ID=Msa1244900-mRNA-1:exon:10908;Parent=Msa1244900-mRNA-1
chr8_2	five_prime_UTR	34381710	34381821	34381710	ID=Msa1244900-mRNA-1:five_prime_utr;Parent=Msa1244900-mRNA-1
chr8_2	five_prime_UTR	34382434	34382457	34382434	ID=Msa1244900-mRNA-1:five_prime_utr;Parent=Msa1244900-mRNA-1
chr8_2	CDS	34382458	34382801	34382458	ID=Msa1244900-mRNA-1:cds;Parent=Msa1244900-mRNA-1
chr8_2	CDS	34382904	34383131	34382904	ID=Msa1244900-mRNA-1:cds;Parent=Msa1244900-mRNA-1
chr8_2	CDS	34383237	34383591	34383237	ID=Msa1244900-mRNA-1:cds;Parent=Msa1244900-mRNA-1
chr8_2	CDS	34383680	34383807	34383680	ID=Msa1244900-mRNA-1:cds;Parent=Msa1244900-mRNA-1
chr8_2	CDS	34383964	34384099	34383964	ID=Msa1244900-mRNA-1:cds;Parent=Msa1244900-mRNA-1
chr8_2	CDS	34384535	34384774	34384535	ID=Msa1244900-mRNA-1:cds;Parent=Msa1244900-mRNA-1
chr8_2	three_prime_UTR	34384775	34385350	34384775	ID=Msa1244900-mRNA-1:three_prime_utr;Parent=Msa1244900-mRNA-1

Gene Sequence

>Msa1244900

ATGGGAGGTGGGTTTAGGGTACTTCACTTAGTAAGGCCATTTCTATCATTCCTTCCTGAAGTTCAGACCGCGGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACCGTGATCTCTCTCTTCATTTTTCTTGTATGTAGTCAGCTTCCTCTGTATGGAATACACTCAACAACAGGTGCAGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTTGGAATCACCCCCATTGTCACTTCTGGTCTTGTAATGCAGCTTTTGGCTGGTTCTAAGATCATTGAAGTCGACAACAACGTCCGTGAGGATCGTGCTCTCTTAAACGGTGCACAGAAGCTACTCGGCATCTTGATAGCTGTTGGAGAGGCTGTTGCCTATGTTCTGTCTGGAATGTATGGTAGTGTAGGCCAGCTTGGAGTGGGAAATGCCATCCTCATCATCCTCCAGCTCTTTTTTGCCGGTATCATTGTCATATGTTTAGATGAGCTCCTTCAAAAAGGCTATGGTTTGGGATCTGGAATTTCTCTGTTCATTGCCACCAATATCTGTGAAAACATTATATGGAAAGCATTTAGTCCCACAACCATTAACAGTGGTCGGGGAGCTGAGTTTGAGGGTGCTGTTATTGCTCTATTCCATTTGTTGATAACTAGAACAGATAAAGTTCGTGCCCTTAGGGAAGCATTTTACCGGCAGAATCTTCCCAATGTCACAAATCTGCTAGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGCGTGGTTTTGCCTGTAAGGTCAAAGAATGCCCGTGGACAGCAGGGTTCATATCCAATCAAACTGTTTTACACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCCCAGCTGCTACACAGAAAATACAGTGGAAACTTCATTGTTAATCTGTTGGGCAAATGGAAGGAATCTGAATATGGAGGTGGTCACTCTATTCCTGTTGGTGGCATTGCATACTATATAACTGCACCCTCTAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTGTTCTACCTTGTGTTTATGTTGTCAGCATGTGCCTTGTTCTCAAAAACTTGGATTGAAGTCTCTGGTTCGTCTGCTAGAGATGTTGCCAAGCAGTTGAAGGAACAACAAATGGTAATGCCTGGTCATCGGGAATCAAATTTGCAAAAAGAGCTGAACCGATATATTCCCACTGCTGCTGCATTTGGAGGCATGTGTATTGGTGCCCTGACAGTATTGGCAGATTTCATGGGTGCAATTGGTTCCGGGACTGGAATATTACTTGCAGTAACAATCATCTATCAGTACTTTGAGACATTTGAGAAGGAAAGAGCCAGCGAGCTTGGTTTCTTTGGTTTCTAA

Protein sequence

>Msa1244900

MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFIVNLLGKWKESEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF*