Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1181810 | RHN38772.1 | 92.571 | 175 | 13 | 0 | 1 | 175 | 1 | 175 | 5.97e-119 | 344 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1181810 | sp|Q9LTH7|ACH12_ARATH | 55.152 | 165 | 66 | 5 | 17 | 175 | 14 | 176 | 9.93e-55 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1181800 | Msa1181810 | 0.804012 | 2.650136e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1181810 | MtrunA17_Chr8g0336791 | 92.571 | 175 | 13 | 0 | 1 | 175 | 1 | 175 | 5.49e-123 | 344 |
Msa1181810 | MtrunA17_Chr8g0336831 | 92.000 | 175 | 14 | 0 | 1 | 175 | 1 | 175 | 2.61e-121 | 342 |
Msa1181810 | MtrunA17_Chr8g0336861 | 83.429 | 175 | 29 | 0 | 1 | 175 | 1 | 175 | 1.20e-105 | 306 |
Msa1181810 | MtrunA17_Chr8g0336781 | 80.000 | 175 | 35 | 0 | 1 | 175 | 36 | 210 | 2.14e-104 | 305 |
Msa1181810 | MtrunA17_Chr8g0348081 | 82.857 | 175 | 29 | 1 | 1 | 175 | 1 | 174 | 5.31e-104 | 302 |
Msa1181810 | MtrunA17_Chr8g0336851 | 78.857 | 175 | 36 | 1 | 1 | 175 | 1 | 174 | 4.40e-100 | 293 |
Msa1181810 | MtrunA17_Chr8g0336761 | 76.000 | 175 | 41 | 1 | 1 | 175 | 1 | 174 | 8.10e-95 | 279 |
Msa1181810 | MtrunA17_Chr8g0336631 | 76.136 | 176 | 40 | 2 | 1 | 175 | 1 | 175 | 1.47e-94 | 278 |
Msa1181810 | MtrunA17_Chr4g0066121 | 68.182 | 176 | 54 | 2 | 1 | 175 | 1 | 175 | 2.58e-82 | 247 |
Msa1181810 | MtrunA17_Chr2g0311761 | 62.805 | 164 | 56 | 3 | 15 | 175 | 20 | 181 | 1.37e-67 | 210 |
Msa1181810 | MtrunA17_Chr2g0311831 | 59.281 | 167 | 57 | 4 | 15 | 175 | 20 | 181 | 1.25e-63 | 200 |
Msa1181810 | MtrunA17_Chr2g0311921 | 56.707 | 164 | 66 | 3 | 15 | 175 | 6 | 167 | 4.09e-63 | 198 |
Msa1181810 | MtrunA17_Chr8g0336751 | 55.215 | 163 | 68 | 4 | 16 | 175 | 47 | 207 | 2.74e-55 | 179 |
Msa1181810 | MtrunA17_Chr1g0167911 | 53.374 | 163 | 71 | 4 | 15 | 175 | 7 | 166 | 3.71e-55 | 177 |
Msa1181810 | MtrunA17_Chr1g0167951 | 54.430 | 158 | 68 | 4 | 19 | 175 | 11 | 165 | 7.52e-55 | 177 |
Msa1181810 | MtrunA17_Chr1g0168001 | 51.479 | 169 | 71 | 5 | 15 | 175 | 7 | 172 | 3.14e-54 | 169 |
Msa1181810 | MtrunA17_Chr1g0167961 | 52.439 | 164 | 72 | 5 | 15 | 175 | 22 | 182 | 9.68e-52 | 169 |
Msa1181810 | MtrunA17_Chr2g0311861 | 51.977 | 177 | 59 | 5 | 2 | 175 | 4 | 157 | 1.93e-51 | 168 |
Msa1181810 | MtrunA17_Chr8g0354241 | 49.697 | 165 | 74 | 4 | 17 | 175 | 22 | 183 | 1.52e-49 | 164 |
Msa1181810 | MtrunA17_Chr8g0354261 | 50.303 | 165 | 73 | 4 | 17 | 175 | 22 | 183 | 2.89e-49 | 163 |
Msa1181810 | MtrunA17_Chr1g0187821 | 44.311 | 167 | 81 | 5 | 17 | 175 | 18 | 180 | 2.67e-44 | 150 |
Msa1181810 | MtrunA17_Chr7g0225881 | 42.857 | 168 | 84 | 3 | 15 | 175 | 15 | 177 | 3.63e-44 | 149 |
Msa1181810 | MtrunA17_Chr1g0187811 | 45.930 | 172 | 76 | 5 | 17 | 175 | 134 | 301 | 1.48e-43 | 150 |
Msa1181810 | MtrunA17_Chr7g0247991 | 42.857 | 161 | 88 | 3 | 17 | 175 | 22 | 180 | 2.92e-43 | 147 |
Msa1181810 | MtrunA17_Chr7g0235951 | 43.210 | 162 | 88 | 4 | 16 | 175 | 21 | 180 | 4.07e-43 | 147 |
Msa1181810 | MtrunA17_Chr8g0335411 | 42.236 | 161 | 89 | 3 | 17 | 175 | 22 | 180 | 8.56e-43 | 146 |
Msa1181810 | MtrunA17_Chr4g0055591 | 45.679 | 162 | 75 | 4 | 19 | 175 | 16 | 169 | 3.82e-42 | 144 |
Msa1181810 | MtrunA17_Chr6g0472861 | 44.253 | 174 | 78 | 6 | 15 | 175 | 15 | 182 | 7.22e-42 | 144 |
Msa1181810 | MtrunA17_Chr8g0364161 | 41.718 | 163 | 85 | 4 | 16 | 173 | 21 | 178 | 8.93e-41 | 135 |
Msa1181810 | MtrunA17_Chr7g0236011 | 42.236 | 161 | 89 | 4 | 17 | 175 | 22 | 180 | 1.26e-40 | 140 |
Msa1181810 | MtrunA17_Chr8g0364471 | 38.889 | 180 | 103 | 5 | 1 | 175 | 3 | 180 | 5.59e-40 | 139 |
Msa1181810 | MtrunA17_Chr2g0311681 | 39.888 | 178 | 100 | 4 | 1 | 174 | 1 | 175 | 6.53e-40 | 138 |
Msa1181810 | MtrunA17_Chr2g0311701 | 39.877 | 163 | 92 | 3 | 16 | 174 | 21 | 181 | 9.84e-40 | 138 |
Msa1181810 | MtrunA17_Chr1g0187831 | 44.048 | 168 | 82 | 5 | 17 | 175 | 19 | 183 | 1.11e-39 | 138 |
Msa1181810 | MtrunA17_Chr4g0011311 | 41.463 | 164 | 86 | 5 | 17 | 175 | 22 | 180 | 1.99e-39 | 135 |
Msa1181810 | MtrunA17_Chr2g0311711 | 41.718 | 163 | 89 | 3 | 16 | 174 | 19 | 179 | 3.90e-39 | 136 |
Msa1181810 | MtrunA17_Chr2g0311691 | 39.326 | 178 | 101 | 4 | 1 | 174 | 1 | 175 | 6.84e-39 | 135 |
Msa1181810 | MtrunA17_Chr8g0362741 | 40.000 | 160 | 72 | 5 | 17 | 171 | 22 | 162 | 2.54e-33 | 119 |
Msa1181810 | MtrunA17_Chr1g0184241 | 38.509 | 161 | 94 | 2 | 17 | 175 | 23 | 180 | 5.58e-32 | 117 |
Msa1181810 | MtrunA17_Chr7g0266651 | 37.975 | 158 | 96 | 2 | 19 | 175 | 15 | 171 | 8.70e-32 | 117 |
Msa1181810 | MtrunA17_Chr2g0311741 | 41.667 | 144 | 72 | 4 | 39 | 175 | 2 | 140 | 1.03e-30 | 113 |
Msa1181810 | MtrunA17_Chr4g0066991 | 37.267 | 161 | 77 | 5 | 17 | 175 | 22 | 160 | 1.35e-30 | 114 |
Msa1181810 | MtrunA17_Chr1g0161081 | 37.888 | 161 | 91 | 3 | 19 | 175 | 28 | 183 | 1.39e-30 | 114 |
Msa1181810 | MtrunA17_Chr1g0161111 | 37.888 | 161 | 91 | 3 | 19 | 175 | 87 | 242 | 2.76e-30 | 114 |
Msa1181810 | MtrunA17_Chr1g0161041 | 38.509 | 161 | 90 | 3 | 19 | 175 | 51 | 206 | 5.39e-30 | 113 |
Msa1181810 | MtrunA17_Chr2g0311751 | 41.463 | 123 | 70 | 2 | 54 | 176 | 21 | 141 | 8.61e-29 | 104 |
Msa1181810 | MtrunA17_Chr1g0167931 | 39.264 | 163 | 56 | 4 | 15 | 175 | 7 | 128 | 4.10e-27 | 103 |
Msa1181810 | MtrunA17_Chr7g0235991 | 38.793 | 116 | 69 | 2 | 60 | 175 | 21 | 134 | 2.27e-24 | 94.0 |
Msa1181810 | MtrunA17_Chr7g0235981 | 34.395 | 157 | 69 | 5 | 21 | 176 | 12 | 135 | 7.13e-23 | 92.8 |
Msa1181810 | MtrunA17_Chr2g0311641 | 36.364 | 132 | 75 | 5 | 26 | 153 | 20 | 146 | 9.52e-19 | 79.0 |
Msa1181810 | MtrunA17_Chr7g0242551 | 30.120 | 166 | 108 | 4 | 14 | 172 | 1 | 165 | 1.38e-18 | 81.6 |
Msa1181810 | MtrunA17_Chr2g0311621 | 41.000 | 100 | 53 | 3 | 26 | 123 | 20 | 115 | 9.27e-18 | 74.7 |
Msa1181810 | MtrunA17_Chr2g0311631 | 36.364 | 132 | 75 | 5 | 26 | 153 | 20 | 146 | 2.62e-17 | 78.2 |
Msa1181810 | MtrunA17_Chr8g0375571 | 31.469 | 143 | 95 | 2 | 27 | 167 | 10 | 151 | 6.76e-17 | 76.6 |
Msa1181810 | MtrunA17_Chr3g0093741 | 30.573 | 157 | 94 | 4 | 26 | 175 | 16 | 164 | 1.56e-14 | 70.1 |
Msa1181810 | MtrunA17_Chr5g0420891 | 31.788 | 151 | 90 | 6 | 28 | 173 | 12 | 154 | 4.10e-14 | 66.6 |
Msa1181810 | MtrunA17_Chr1g0179801 | 30.405 | 148 | 90 | 4 | 27 | 165 | 26 | 169 | 8.38e-14 | 68.2 |
Msa1181810 | MtrunA17_Chr3g0093751 | 29.299 | 157 | 96 | 4 | 26 | 175 | 16 | 164 | 9.23e-14 | 68.2 |
Msa1181810 | MtrunA17_Chr8g0375591 | 34.906 | 106 | 66 | 2 | 28 | 130 | 11 | 116 | 9.71e-14 | 64.7 |
Msa1181810 | MtrunA17_Chr5g0421011 | 31.159 | 138 | 77 | 5 | 47 | 173 | 25 | 155 | 2.11e-13 | 67.0 |
Msa1181810 | MtrunA17_Chr8g0375641 | 30.000 | 150 | 96 | 5 | 27 | 171 | 17 | 162 | 2.38e-13 | 64.7 |
Msa1181810 | MtrunA17_Chr3g0128001 | 32.110 | 109 | 68 | 1 | 60 | 168 | 38 | 140 | 2.54e-13 | 66.6 |
Msa1181810 | MtrunA17_Chr8g0375661 | 28.378 | 148 | 101 | 4 | 27 | 171 | 17 | 162 | 3.67e-13 | 63.9 |
Msa1181810 | MtrunA17_Chr5g0423201 | 30.667 | 150 | 96 | 4 | 27 | 173 | 12 | 156 | 4.66e-13 | 65.9 |
Msa1181810 | MtrunA17_Chr5g0426891 | 26.087 | 138 | 99 | 2 | 27 | 161 | 3 | 140 | 6.98e-13 | 65.5 |
Msa1181810 | MtrunA17_Chr5g0423211 | 31.788 | 151 | 92 | 6 | 27 | 173 | 12 | 155 | 7.46e-13 | 65.5 |
Msa1181810 | MtrunA17_Chr5g0421101 | 31.544 | 149 | 91 | 5 | 27 | 171 | 12 | 153 | 9.09e-13 | 65.1 |
Msa1181810 | MtrunA17_Chr4g0006371 | 25.767 | 163 | 104 | 3 | 15 | 161 | 1 | 162 | 1.42e-12 | 64.7 |
Msa1181810 | MtrunA17_Chr8g0375671 | 29.932 | 147 | 98 | 4 | 28 | 171 | 18 | 162 | 1.45e-12 | 64.7 |
Msa1181810 | MtrunA17_Chr3g0126741 | 29.012 | 162 | 98 | 4 | 4 | 161 | 13 | 161 | 2.22e-12 | 63.9 |
Msa1181810 | MtrunA17_Chr5g0420901 | 31.788 | 151 | 90 | 6 | 28 | 173 | 12 | 154 | 3.23e-12 | 63.5 |
Msa1181810 | MtrunA17_Chr3g0113641 | 24.503 | 151 | 110 | 2 | 14 | 161 | 1 | 150 | 3.54e-12 | 63.5 |
Msa1181810 | MtrunA17_Chr3g0093761 | 29.114 | 158 | 94 | 6 | 26 | 175 | 16 | 163 | 3.59e-12 | 63.5 |
Msa1181810 | MtrunA17_Chr5g0420951 | 27.381 | 168 | 111 | 4 | 11 | 173 | 1 | 162 | 3.83e-12 | 63.5 |
Msa1181810 | MtrunA17_Chr5g0421091 | 31.333 | 150 | 92 | 6 | 28 | 173 | 11 | 153 | 5.94e-12 | 62.8 |
Msa1181810 | MtrunA17_Chr8g0345831 | 29.245 | 106 | 72 | 1 | 56 | 161 | 38 | 140 | 9.01e-12 | 62.4 |
Msa1181810 | MtrunA17_Chr5g0423221 | 28.289 | 152 | 96 | 6 | 27 | 173 | 36 | 179 | 2.21e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1181810 | AT5G59540.2 | 55.152 | 165 | 66 | 5 | 17 | 175 | 14 | 176 | 2.03e-56 | 179 |
Msa1181810 | AT5G59540.1 | 55.152 | 165 | 66 | 5 | 17 | 175 | 14 | 176 | 1.01e-55 | 180 |
Msa1181810 | AT1G06640.3 | 50.595 | 168 | 72 | 4 | 16 | 175 | 14 | 178 | 1.79e-52 | 169 |
Msa1181810 | AT1G06640.2 | 50.595 | 168 | 72 | 4 | 16 | 175 | 14 | 178 | 2.14e-52 | 170 |
Msa1181810 | AT1G04350.1 | 50.602 | 166 | 70 | 5 | 16 | 175 | 10 | 169 | 5.05e-52 | 170 |
Msa1181810 | AT1G06650.1 | 48.193 | 166 | 79 | 3 | 16 | 175 | 14 | 178 | 6.92e-52 | 168 |
Msa1181810 | AT1G06620.2 | 46.286 | 175 | 87 | 4 | 5 | 174 | 2 | 174 | 9.18e-52 | 167 |
Msa1181810 | AT1G06640.1 | 50.595 | 168 | 72 | 4 | 16 | 175 | 14 | 178 | 1.04e-51 | 169 |
Msa1181810 | AT1G06650.2 | 48.193 | 166 | 79 | 3 | 16 | 175 | 14 | 178 | 3.27e-51 | 168 |
Msa1181810 | AT5G43440.2 | 46.707 | 167 | 81 | 2 | 15 | 175 | 11 | 175 | 3.67e-51 | 166 |
Msa1181810 | AT1G06620.1 | 46.286 | 175 | 87 | 4 | 5 | 174 | 2 | 174 | 9.58e-51 | 167 |
Msa1181810 | AT1G06645.1 | 47.778 | 180 | 86 | 3 | 4 | 176 | 16 | 194 | 1.91e-50 | 166 |
Msa1181810 | AT5G43440.1 | 46.707 | 167 | 81 | 2 | 15 | 175 | 11 | 175 | 3.18e-50 | 166 |
Msa1181810 | AT5G59530.1 | 52.439 | 164 | 71 | 7 | 17 | 175 | 13 | 174 | 2.98e-49 | 163 |
Msa1181810 | AT2G30830.1 | 45.963 | 161 | 85 | 2 | 16 | 175 | 9 | 168 | 3.05e-47 | 157 |
Msa1181810 | AT2G30840.2 | 45.455 | 165 | 82 | 4 | 16 | 174 | 9 | 171 | 3.12e-47 | 156 |
Msa1181810 | AT2G30840.3 | 45.122 | 164 | 84 | 3 | 16 | 174 | 9 | 171 | 4.67e-47 | 157 |
Msa1181810 | AT2G30840.1 | 45.122 | 164 | 84 | 3 | 16 | 174 | 9 | 171 | 4.91e-47 | 157 |
Msa1181810 | AT5G43450.2 | 43.713 | 167 | 83 | 4 | 15 | 175 | 11 | 172 | 4.19e-46 | 153 |
Msa1181810 | AT1G03410.2 | 46.341 | 164 | 82 | 3 | 16 | 174 | 8 | 170 | 1.26e-45 | 153 |
Msa1181810 | AT5G43450.1 | 43.713 | 167 | 83 | 4 | 15 | 175 | 11 | 172 | 2.20e-45 | 153 |
Msa1181810 | AT1G03410.1 | 47.273 | 165 | 79 | 4 | 16 | 174 | 45 | 207 | 4.00e-45 | 153 |
Msa1181810 | AT2G25450.1 | 45.963 | 161 | 83 | 3 | 16 | 174 | 9 | 167 | 4.17e-45 | 152 |
Msa1181810 | AT1G04380.2 | 43.478 | 161 | 72 | 4 | 16 | 175 | 13 | 155 | 5.93e-43 | 144 |
Msa1181810 | AT3G61400.2 | 41.808 | 177 | 95 | 3 | 5 | 174 | 2 | 177 | 2.18e-42 | 143 |
Msa1181810 | AT1G04380.1 | 43.478 | 161 | 72 | 4 | 16 | 175 | 13 | 155 | 4.46e-42 | 144 |
Msa1181810 | AT3G61400.1 | 41.808 | 177 | 95 | 3 | 5 | 174 | 2 | 177 | 8.28e-42 | 144 |
Msa1181810 | AT1G03400.1 | 44.512 | 164 | 75 | 6 | 16 | 174 | 8 | 160 | 5.43e-38 | 133 |
Msa1181810 | AT1G03400.2 | 44.512 | 164 | 75 | 6 | 16 | 174 | 8 | 160 | 1.81e-37 | 132 |
Msa1181810 | AT3G13610.1 | 30.573 | 157 | 92 | 6 | 26 | 175 | 25 | 171 | 5.49e-17 | 77.4 |
Msa1181810 | AT3G12900.1 | 30.921 | 152 | 100 | 4 | 26 | 175 | 20 | 168 | 1.17e-16 | 76.6 |
Msa1181810 | AT1G55290.1 | 30.496 | 141 | 85 | 4 | 26 | 160 | 24 | 157 | 3.46e-16 | 75.1 |
Msa1181810 | AT2G36690.2 | 30.667 | 150 | 92 | 5 | 25 | 165 | 18 | 164 | 2.79e-14 | 70.1 |
Msa1181810 | AT2G36690.1 | 30.667 | 150 | 92 | 5 | 25 | 165 | 18 | 164 | 2.79e-14 | 70.1 |
Msa1181810 | AT4G10500.1 | 28.431 | 102 | 70 | 1 | 60 | 161 | 44 | 142 | 1.12e-12 | 65.5 |
Msa1181810 | AT4G10490.1 | 23.894 | 113 | 83 | 1 | 49 | 161 | 31 | 140 | 1.29e-11 | 62.4 |
Msa1181810 | AT2G38240.1 | 27.703 | 148 | 97 | 3 | 28 | 171 | 12 | 153 | 1.38e-11 | 62.0 |
Msa1181810 | AT3G55970.2 | 25.294 | 170 | 117 | 4 | 15 | 175 | 1 | 169 | 2.13e-11 | 61.2 |
Msa1181810 | AT3G55970.1 | 25.294 | 170 | 117 | 4 | 15 | 175 | 1 | 169 | 2.49e-11 | 61.6 |
Find 39 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATACCACAGGAATCTCTTC+TGG | 0.327757 | 8_1:-16338602 | None:intergenic |
TCTTCTGGATTGAGAGTATC+AGG | 0.343071 | 8_1:-16338587 | None:intergenic |
ATAATTGCTATTGTAAATAA+AGG | 0.349980 | 8_1:-16338504 | None:intergenic |
AAGGAAGCATGTGAAACATT+AGG | 0.387874 | 8_1:+16338353 | Msa1181810:CDS |
TTGGCTTTCTCATATTTGTC+AGG | 0.399031 | 8_1:-16338242 | None:intergenic |
AATAACATGGCTAGTGTTGT+TGG | 0.420974 | 8_1:-16338261 | None:intergenic |
ATAGCCCACCGGCACTCAAT+TGG | 0.428978 | 8_1:+16338534 | Msa1181810:CDS |
GCATTTGATGAAACAAAATC+TGG | 0.443417 | 8_1:+16338161 | Msa1181810:CDS |
GTTCTTGAGGAGTTGAAAGA+TGG | 0.453205 | 8_1:+16338413 | Msa1181810:CDS |
AGTTGAAAGATGGGGTAAAG+AGG | 0.490256 | 8_1:+16338423 | Msa1181810:CDS |
AAGAGATTCCTGTGGTATGC+AGG | 0.491788 | 8_1:+16338606 | Msa1181810:CDS |
TTCATTATAGAATCAACGTT+AGG | 0.506798 | 8_1:-16338128 | None:intergenic |
GGTTGACAATGGAATATCTC+AGG | 0.506900 | 8_1:-16338221 | None:intergenic |
TTGTTGATGGAGGACTTAAG+AGG | 0.512431 | 8_1:+16338195 | Msa1181810:CDS |
AACTCCTCAAGAACACTCAA+AGG | 0.516232 | 8_1:-16338404 | None:intergenic |
GGTGTGAAAGGACTTGTTGA+TGG | 0.516751 | 8_1:+16338182 | Msa1181810:CDS |
TTCTTGAGGAGTTGAAAGAT+GGG | 0.523847 | 8_1:+16338414 | Msa1181810:CDS |
CATATTTGTCAGGTTGACAA+TGG | 0.526470 | 8_1:-16338232 | None:intergenic |
ACTCCTCAAGAACACTCAAA+GGG | 0.527377 | 8_1:-16338403 | None:intergenic |
TCCCTCCAATTGAGTGCCGG+TGG | 0.531130 | 8_1:-16338539 | None:intergenic |
TGACTTTCTCAACTATACCT+TGG | 0.540967 | 8_1:-16338331 | None:intergenic |
GCCCACCGGCACTCAATTGG+AGG | 0.544222 | 8_1:+16338537 | Msa1181810:CDS |
AATCCCTTTGAGTGTTCTTG+AGG | 0.545874 | 8_1:+16338400 | Msa1181810:CDS |
GAAACAAAATCTGGTGTGAA+AGG | 0.554447 | 8_1:+16338170 | Msa1181810:CDS |
CCCTCCAATTGAGTGCCGGT+GGG | 0.563381 | 8_1:-16338538 | None:intergenic |
TACTAGTACCTGCATACCAC+AGG | 0.580193 | 8_1:-16338614 | None:intergenic |
GTTAGGCATGGTTGTATCAG+TGG | 0.585606 | 8_1:-16338111 | None:intergenic |
ATATCTGCAAGATCTATGAC+AGG | 0.589209 | 8_1:-16338284 | None:intergenic |
TATAGAATCAACGTTAGGCA+TGG | 0.592736 | 8_1:-16338123 | None:intergenic |
TTATGATATTTATAGCCCAC+CGG | 0.601907 | 8_1:+16338523 | Msa1181810:CDS |
GTATCCCTCCAATTGAGTGC+CGG | 0.606446 | 8_1:-16338542 | None:intergenic |
AGGTATAGTTGAGAAAGTCA+AGG | 0.629042 | 8_1:+16338334 | Msa1181810:CDS |
TCTTGAGGAGTTGAAAGATG+GGG | 0.646657 | 8_1:+16338415 | Msa1181810:CDS |
CCCACCGGCACTCAATTGGA+GGG | 0.649414 | 8_1:+16338538 | Msa1181810:CDS |
CAATCCAGAAGAGATTCCTG+TGG | 0.674493 | 8_1:+16338598 | Msa1181810:CDS |
GATCTATGACAGGAATAACA+TGG | 0.685513 | 8_1:-16338274 | None:intergenic |
TCTGGATTGAGAGTATCAGG+TGG | 0.693497 | 8_1:-16338584 | None:intergenic |
AAAGATTCAAGTATTCACCA+AGG | 0.698468 | 8_1:+16338314 | Msa1181810:CDS |
GTGAAAGGACTTGTTGATGG+AGG | 0.720260 | 8_1:+16338185 | Msa1181810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAATTGCTATTGTAAATAA+AGG | - | chr8_1:16338507-16338526 | None:intergenic | 15.0% |
! | TTCATTATAGAATCAACGTT+AGG | - | chr8_1:16338131-16338150 | None:intergenic | 25.0% |
!!! | TGAAACATTAGGTTTTTTTC+AGG | + | chr8_1:16338364-16338383 | Msa1181810:CDS | 25.0% |
!!! | TTTTTTCAGGTTGTTAATCA+TGG | + | chr8_1:16338377-16338396 | Msa1181810:CDS | 25.0% |
GCATTTGATGAAACAAAATC+TGG | + | chr8_1:16338161-16338180 | Msa1181810:CDS | 30.0% | |
AAAGATTCAAGTATTCACCA+AGG | + | chr8_1:16338314-16338333 | Msa1181810:CDS | 30.0% | |
TTATGATATTTATAGCCCAC+CGG | + | chr8_1:16338523-16338542 | Msa1181810:CDS | 30.0% | |
TATAGAATCAACGTTAGGCA+TGG | - | chr8_1:16338126-16338145 | None:intergenic | 35.0% | |
GAAACAAAATCTGGTGTGAA+AGG | + | chr8_1:16338170-16338189 | Msa1181810:CDS | 35.0% | |
!! | CATATTTGTCAGGTTGACAA+TGG | - | chr8_1:16338235-16338254 | None:intergenic | 35.0% |
! | TTGGCTTTCTCATATTTGTC+AGG | - | chr8_1:16338245-16338264 | None:intergenic | 35.0% |
AATAACATGGCTAGTGTTGT+TGG | - | chr8_1:16338264-16338283 | None:intergenic | 35.0% | |
GATCTATGACAGGAATAACA+TGG | - | chr8_1:16338277-16338296 | None:intergenic | 35.0% | |
ATATCTGCAAGATCTATGAC+AGG | - | chr8_1:16338287-16338306 | None:intergenic | 35.0% | |
TGACTTTCTCAACTATACCT+TGG | - | chr8_1:16338334-16338353 | None:intergenic | 35.0% | |
AGGTATAGTTGAGAAAGTCA+AGG | + | chr8_1:16338334-16338353 | Msa1181810:CDS | 35.0% | |
! | AAGGAAGCATGTGAAACATT+AGG | + | chr8_1:16338353-16338372 | Msa1181810:CDS | 35.0% |
TTCTTGAGGAGTTGAAAGAT+GGG | + | chr8_1:16338414-16338433 | Msa1181810:CDS | 35.0% | |
! | TTGTTGATGGAGGACTTAAG+AGG | + | chr8_1:16338195-16338214 | Msa1181810:CDS | 40.0% |
GGTTGACAATGGAATATCTC+AGG | - | chr8_1:16338224-16338243 | None:intergenic | 40.0% | |
AATCCCTTTGAGTGTTCTTG+AGG | + | chr8_1:16338400-16338419 | Msa1181810:CDS | 40.0% | |
ACTCCTCAAGAACACTCAAA+GGG | - | chr8_1:16338406-16338425 | None:intergenic | 40.0% | |
AACTCCTCAAGAACACTCAA+AGG | - | chr8_1:16338407-16338426 | None:intergenic | 40.0% | |
GTTCTTGAGGAGTTGAAAGA+TGG | + | chr8_1:16338413-16338432 | Msa1181810:CDS | 40.0% | |
TCTTGAGGAGTTGAAAGATG+GGG | + | chr8_1:16338415-16338434 | Msa1181810:CDS | 40.0% | |
AGTTGAAAGATGGGGTAAAG+AGG | + | chr8_1:16338423-16338442 | Msa1181810:CDS | 40.0% | |
!! | GGATACTTTTGCGTGTTACT+TGG | + | chr8_1:16338559-16338578 | Msa1181810:CDS | 40.0% |
!! | TCTTCTGGATTGAGAGTATC+AGG | - | chr8_1:16338590-16338609 | None:intergenic | 40.0% |
GTTAGGCATGGTTGTATCAG+TGG | - | chr8_1:16338114-16338133 | None:intergenic | 45.0% | |
!! | GGTGTGAAAGGACTTGTTGA+TGG | + | chr8_1:16338182-16338201 | Msa1181810:CDS | 45.0% |
!! | GTGAAAGGACTTGTTGATGG+AGG | + | chr8_1:16338185-16338204 | Msa1181810:CDS | 45.0% |
!! | TCTGGATTGAGAGTATCAGG+TGG | - | chr8_1:16338587-16338606 | None:intergenic | 45.0% |
CAATCCAGAAGAGATTCCTG+TGG | + | chr8_1:16338598-16338617 | Msa1181810:CDS | 45.0% | |
CATACCACAGGAATCTCTTC+TGG | - | chr8_1:16338605-16338624 | None:intergenic | 45.0% | |
AAGAGATTCCTGTGGTATGC+AGG | + | chr8_1:16338606-16338625 | Msa1181810:CDS | 45.0% | |
GTATCCCTCCAATTGAGTGC+CGG | - | chr8_1:16338545-16338564 | None:intergenic | 50.0% | |
ATAGCCCACCGGCACTCAAT+TGG | + | chr8_1:16338534-16338553 | Msa1181810:CDS | 55.0% | |
!! | CCCTCCAATTGAGTGCCGGT+GGG | - | chr8_1:16338541-16338560 | None:intergenic | 60.0% |
CCCACCGGCACTCAATTGGA+GGG | + | chr8_1:16338538-16338557 | Msa1181810:CDS | 60.0% | |
!! | TCCCTCCAATTGAGTGCCGG+TGG | - | chr8_1:16338542-16338561 | None:intergenic | 60.0% |
GCCCACCGGCACTCAATTGG+AGG | + | chr8_1:16338537-16338556 | Msa1181810:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 16338104 | 16338634 | 16338104 | ID=Msa1181810;Name=Msa1181810 |
chr8_1 | mRNA | 16338104 | 16338634 | 16338104 | ID=Msa1181810-mRNA-1;Parent=Msa1181810;Name=Msa1181810-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|176 |
chr8_1 | exon | 16338104 | 16338634 | 16338104 | ID=Msa1181810-mRNA-1:exon:6133;Parent=Msa1181810-mRNA-1 |
chr8_1 | CDS | 16338104 | 16338634 | 16338104 | ID=Msa1181810-mRNA-1:cds;Parent=Msa1181810-mRNA-1 |
Gene Sequence |
Protein sequence |