Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181800 | AET01266.1 | 71.429 | 175 | 17 | 1 | 1 | 142 | 1 | 175 | 1.35e-80 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181800 | sp|Q9LTH7|ACH12_ARATH | 46.341 | 164 | 49 | 5 | 17 | 142 | 14 | 176 | 1.25e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037880 | Msa1181800 | 0.811171 | 7.998642e-51 | -8.615850e-47 |
| Msa0653490 | Msa1181800 | 0.803395 | 3.558280e-49 | -8.615850e-47 |
| Msa0784290 | Msa1181800 | 0.814071 | 1.856545e-51 | -8.615850e-47 |
| Msa0820850 | Msa1181800 | 0.819250 | 1.281709e-52 | -8.615850e-47 |
| Msa0153830 | Msa1181800 | 0.816311 | 5.903714e-52 | -8.615850e-47 |
| Msa0216530 | Msa1181800 | 0.819182 | 1.328611e-52 | -8.615850e-47 |
| Msa0233300 | Msa1181800 | 0.833767 | 4.414351e-56 | -8.615850e-47 |
| Msa0382180 | Msa1181800 | 0.807653 | 4.550453e-50 | -8.615850e-47 |
| Msa0431690 | Msa1181800 | 0.802327 | 5.913646e-49 | -8.615850e-47 |
| Msa1043050 | Msa1181800 | 0.801579 | 8.422595e-49 | -8.615850e-47 |
| Msa1087990 | Msa1181800 | 0.800244 | 1.578458e-48 | -8.615850e-47 |
| Msa0339620 | Msa1181800 | 0.808313 | 3.292571e-50 | -8.615850e-47 |
| Msa0344910 | Msa1181800 | 0.839121 | 1.914944e-57 | -8.615850e-47 |
| Msa0344980 | Msa1181800 | 0.814884 | 1.227163e-51 | -8.615850e-47 |
| Msa1150710 | Msa1181800 | 0.803135 | 4.027906e-49 | -8.615850e-47 |
| Msa1181800 | Msa1181810 | 0.804012 | 2.650136e-49 | -8.615850e-47 |
| Msa1181800 | Msa1269940 | 0.809219 | 2.108491e-50 | -8.615850e-47 |
| Msa1181800 | Msa1427230 | 0.800344 | 1.505890e-48 | -8.615850e-47 |
| Msa1181800 | Msa1460800 | 0.800099 | 1.689379e-48 | -8.615850e-47 |
| Msa0523940 | Msa1181800 | 0.801489 | 8.790017e-49 | -8.615850e-47 |
| Msa0861130 | Msa1181800 | 0.820016 | 8.568081e-53 | -8.615850e-47 |
| Msa0864070 | Msa1181800 | 0.826271 | 2.972971e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181800 | MtrunA17_Chr8g0336781 | 71.429 | 175 | 17 | 1 | 1 | 142 | 36 | 210 | 2.01e-84 | 253 |
| Msa1181800 | MtrunA17_Chr8g0336791 | 62.857 | 175 | 32 | 1 | 1 | 142 | 1 | 175 | 3.02e-77 | 228 |
| Msa1181800 | MtrunA17_Chr8g0336831 | 62.286 | 175 | 33 | 1 | 1 | 142 | 1 | 175 | 1.79e-75 | 225 |
| Msa1181800 | MtrunA17_Chr8g0336861 | 64.571 | 175 | 29 | 1 | 1 | 142 | 1 | 175 | 1.81e-74 | 226 |
| Msa1181800 | MtrunA17_Chr8g0336851 | 65.714 | 175 | 26 | 2 | 1 | 142 | 1 | 174 | 2.34e-74 | 226 |
| Msa1181800 | MtrunA17_Chr8g0348081 | 64.571 | 175 | 28 | 2 | 1 | 142 | 1 | 174 | 4.29e-73 | 223 |
| Msa1181800 | MtrunA17_Chr8g0336631 | 65.341 | 176 | 26 | 3 | 1 | 142 | 1 | 175 | 1.21e-72 | 221 |
| Msa1181800 | MtrunA17_Chr8g0336761 | 65.714 | 175 | 26 | 2 | 1 | 142 | 1 | 174 | 3.26e-72 | 220 |
| Msa1181800 | MtrunA17_Chr4g0066121 | 56.250 | 176 | 42 | 3 | 1 | 142 | 1 | 175 | 4.23e-60 | 189 |
| Msa1181800 | MtrunA17_Chr2g0311761 | 53.179 | 173 | 44 | 4 | 5 | 142 | 11 | 181 | 9.69e-51 | 166 |
| Msa1181800 | MtrunA17_Chr2g0311831 | 51.429 | 175 | 44 | 5 | 5 | 142 | 11 | 181 | 1.31e-47 | 157 |
| Msa1181800 | MtrunA17_Chr2g0311921 | 50.920 | 163 | 44 | 3 | 15 | 142 | 6 | 167 | 2.67e-46 | 154 |
| Msa1181800 | MtrunA17_Chr2g0311861 | 50.633 | 158 | 61 | 5 | 1 | 142 | 1 | 157 | 3.58e-40 | 137 |
| Msa1181800 | MtrunA17_Chr8g0336751 | 44.186 | 172 | 59 | 4 | 6 | 142 | 38 | 207 | 7.77e-39 | 135 |
| Msa1181800 | MtrunA17_Chr1g0168001 | 45.238 | 168 | 50 | 5 | 15 | 142 | 7 | 172 | 9.32e-38 | 127 |
| Msa1181800 | MtrunA17_Chr1g0167951 | 42.857 | 161 | 57 | 4 | 15 | 142 | 7 | 165 | 9.15e-37 | 129 |
| Msa1181800 | MtrunA17_Chr1g0167911 | 44.444 | 162 | 54 | 4 | 15 | 142 | 7 | 166 | 1.03e-36 | 129 |
| Msa1181800 | MtrunA17_Chr1g0167961 | 44.172 | 163 | 54 | 5 | 15 | 142 | 22 | 182 | 2.45e-36 | 128 |
| Msa1181800 | MtrunA17_Chr8g0354261 | 43.976 | 166 | 51 | 4 | 16 | 142 | 21 | 183 | 5.16e-36 | 127 |
| Msa1181800 | MtrunA17_Chr8g0354241 | 42.771 | 166 | 53 | 4 | 16 | 142 | 21 | 183 | 3.71e-34 | 122 |
| Msa1181800 | MtrunA17_Chr6g0472861 | 38.462 | 169 | 62 | 4 | 15 | 142 | 15 | 182 | 7.14e-29 | 108 |
| Msa1181800 | MtrunA17_Chr7g0235951 | 37.500 | 160 | 65 | 4 | 17 | 142 | 22 | 180 | 8.04e-29 | 108 |
| Msa1181800 | MtrunA17_Chr7g0236011 | 36.095 | 169 | 73 | 3 | 17 | 151 | 22 | 189 | 1.02e-28 | 108 |
| Msa1181800 | MtrunA17_Chr7g0247991 | 38.272 | 162 | 61 | 4 | 17 | 142 | 22 | 180 | 1.31e-28 | 107 |
| Msa1181800 | MtrunA17_Chr1g0187811 | 38.596 | 171 | 61 | 5 | 15 | 142 | 132 | 301 | 1.33e-28 | 109 |
| Msa1181800 | MtrunA17_Chr4g0055591 | 37.580 | 157 | 66 | 3 | 17 | 142 | 14 | 169 | 2.14e-28 | 107 |
| Msa1181800 | MtrunA17_Chr7g0225881 | 35.955 | 178 | 77 | 3 | 1 | 142 | 1 | 177 | 4.00e-28 | 106 |
| Msa1181800 | MtrunA17_Chr8g0364471 | 37.500 | 160 | 65 | 4 | 17 | 142 | 22 | 180 | 6.59e-28 | 106 |
| Msa1181800 | MtrunA17_Chr1g0187821 | 37.349 | 166 | 61 | 5 | 17 | 142 | 18 | 180 | 1.59e-27 | 105 |
| Msa1181800 | MtrunA17_Chr8g0335411 | 35.000 | 160 | 69 | 3 | 17 | 142 | 22 | 180 | 1.29e-26 | 102 |
| Msa1181800 | MtrunA17_Chr4g0011311 | 35.625 | 160 | 68 | 4 | 17 | 142 | 22 | 180 | 1.62e-25 | 98.6 |
| Msa1181800 | MtrunA17_Chr1g0187831 | 36.310 | 168 | 66 | 5 | 15 | 142 | 17 | 183 | 3.21e-25 | 99.0 |
| Msa1181800 | MtrunA17_Chr8g0362741 | 38.028 | 142 | 67 | 4 | 17 | 138 | 22 | 162 | 3.69e-25 | 97.4 |
| Msa1181800 | MtrunA17_Chr8g0364161 | 35.897 | 156 | 65 | 4 | 17 | 138 | 22 | 176 | 5.58e-25 | 94.7 |
| Msa1181800 | MtrunA17_Chr2g0311711 | 34.161 | 161 | 69 | 2 | 17 | 141 | 20 | 179 | 1.36e-24 | 97.1 |
| Msa1181800 | MtrunA17_Chr7g0235981 | 37.984 | 129 | 75 | 4 | 17 | 142 | 8 | 134 | 1.37e-23 | 94.0 |
| Msa1181800 | MtrunA17_Chr2g0311701 | 33.540 | 161 | 70 | 4 | 17 | 141 | 22 | 181 | 2.13e-23 | 94.0 |
| Msa1181800 | MtrunA17_Chr1g0184241 | 34.375 | 160 | 71 | 3 | 16 | 142 | 22 | 180 | 5.50e-23 | 92.8 |
| Msa1181800 | MtrunA17_Chr1g0161081 | 31.677 | 161 | 76 | 2 | 15 | 142 | 24 | 183 | 6.41e-22 | 90.1 |
| Msa1181800 | MtrunA17_Chr2g0311681 | 32.768 | 177 | 81 | 4 | 1 | 141 | 1 | 175 | 1.70e-21 | 88.6 |
| Msa1181800 | MtrunA17_Chr2g0311751 | 44.211 | 95 | 52 | 1 | 49 | 143 | 48 | 141 | 2.34e-21 | 84.7 |
| Msa1181800 | MtrunA17_Chr2g0311691 | 33.898 | 177 | 79 | 5 | 1 | 141 | 1 | 175 | 4.27e-21 | 87.8 |
| Msa1181800 | MtrunA17_Chr7g0266651 | 30.864 | 162 | 77 | 3 | 15 | 142 | 11 | 171 | 1.47e-20 | 86.3 |
| Msa1181800 | MtrunA17_Chr2g0311741 | 46.809 | 94 | 49 | 1 | 49 | 142 | 48 | 140 | 2.54e-20 | 85.1 |
| Msa1181800 | MtrunA17_Chr1g0161111 | 30.435 | 161 | 78 | 2 | 15 | 142 | 83 | 242 | 2.77e-20 | 85.9 |
| Msa1181800 | MtrunA17_Chr1g0161041 | 31.677 | 161 | 76 | 2 | 15 | 142 | 47 | 206 | 1.10e-19 | 84.0 |
| Msa1181800 | MtrunA17_Chr7g0235991 | 38.043 | 92 | 56 | 1 | 51 | 142 | 44 | 134 | 2.91e-17 | 74.7 |
| Msa1181800 | MtrunA17_Chr4g0066991 | 31.875 | 160 | 54 | 4 | 17 | 142 | 22 | 160 | 4.02e-17 | 76.6 |
| Msa1181800 | MtrunA17_Chr1g0167931 | 39.394 | 99 | 26 | 2 | 15 | 79 | 7 | 105 | 5.82e-13 | 64.7 |
| Msa1181800 | MtrunA17_Chr1g0161101 | 35.714 | 112 | 64 | 3 | 16 | 122 | 100 | 208 | 3.86e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181800 | AT5G59540.2 | 46.341 | 164 | 49 | 5 | 17 | 142 | 14 | 176 | 3.42e-39 | 134 |
| Msa1181800 | AT5G59540.1 | 46.341 | 164 | 49 | 5 | 17 | 142 | 14 | 176 | 1.27e-38 | 134 |
| Msa1181800 | AT1G04350.1 | 44.099 | 161 | 55 | 4 | 17 | 143 | 11 | 170 | 7.58e-37 | 129 |
| Msa1181800 | AT1G06620.2 | 41.772 | 158 | 56 | 2 | 19 | 141 | 18 | 174 | 4.81e-36 | 125 |
| Msa1181800 | AT1G06650.1 | 41.818 | 165 | 56 | 3 | 17 | 142 | 15 | 178 | 1.34e-35 | 125 |
| Msa1181800 | AT1G06620.1 | 41.772 | 158 | 56 | 2 | 19 | 141 | 18 | 174 | 2.65e-35 | 125 |
| Msa1181800 | AT1G06650.2 | 41.818 | 165 | 56 | 3 | 17 | 142 | 15 | 178 | 3.59e-35 | 125 |
| Msa1181800 | AT1G06640.3 | 40.606 | 165 | 58 | 3 | 17 | 142 | 15 | 178 | 3.68e-35 | 124 |
| Msa1181800 | AT1G06640.2 | 40.606 | 165 | 58 | 3 | 17 | 142 | 15 | 178 | 5.51e-35 | 124 |
| Msa1181800 | AT1G06640.1 | 40.606 | 165 | 58 | 3 | 17 | 142 | 15 | 178 | 1.50e-34 | 124 |
| Msa1181800 | AT2G30840.2 | 39.877 | 163 | 59 | 3 | 17 | 141 | 10 | 171 | 1.51e-34 | 122 |
| Msa1181800 | AT5G43440.2 | 39.394 | 165 | 63 | 2 | 15 | 142 | 11 | 175 | 4.35e-34 | 121 |
| Msa1181800 | AT2G30840.1 | 39.877 | 163 | 59 | 3 | 17 | 141 | 10 | 171 | 4.47e-34 | 122 |
| Msa1181800 | AT2G30840.3 | 39.877 | 163 | 59 | 3 | 17 | 141 | 10 | 171 | 5.19e-34 | 122 |
| Msa1181800 | AT5G43440.1 | 39.394 | 165 | 63 | 2 | 15 | 142 | 11 | 175 | 2.35e-33 | 120 |
| Msa1181800 | AT2G30830.1 | 39.375 | 160 | 62 | 3 | 17 | 142 | 10 | 168 | 7.16e-33 | 119 |
| Msa1181800 | AT5G59530.1 | 43.636 | 165 | 51 | 7 | 17 | 142 | 13 | 174 | 8.28e-32 | 116 |
| Msa1181800 | AT1G06645.1 | 39.735 | 151 | 52 | 1 | 17 | 128 | 28 | 178 | 5.14e-31 | 114 |
| Msa1181800 | AT5G43450.2 | 38.650 | 163 | 64 | 3 | 15 | 142 | 11 | 172 | 6.24e-31 | 112 |
| Msa1181800 | AT5G43450.1 | 38.650 | 163 | 64 | 3 | 15 | 142 | 11 | 172 | 1.89e-30 | 113 |
| Msa1181800 | AT1G03410.2 | 38.037 | 163 | 62 | 4 | 17 | 141 | 9 | 170 | 1.49e-29 | 110 |
| Msa1181800 | AT1G03410.1 | 38.037 | 163 | 62 | 4 | 17 | 141 | 46 | 207 | 1.89e-29 | 110 |
| Msa1181800 | AT2G25450.1 | 37.107 | 159 | 65 | 3 | 17 | 141 | 10 | 167 | 2.82e-29 | 109 |
| Msa1181800 | AT1G04380.2 | 50.526 | 95 | 46 | 1 | 48 | 142 | 62 | 155 | 7.44e-29 | 107 |
| Msa1181800 | AT1G04380.1 | 50.526 | 95 | 46 | 1 | 48 | 142 | 62 | 155 | 3.25e-28 | 107 |
| Msa1181800 | AT1G03400.1 | 37.908 | 153 | 66 | 2 | 17 | 141 | 9 | 160 | 1.09e-27 | 105 |
| Msa1181800 | AT1G03400.2 | 37.908 | 153 | 66 | 2 | 17 | 141 | 9 | 160 | 1.59e-27 | 105 |
| Msa1181800 | AT3G61400.2 | 34.132 | 167 | 69 | 2 | 15 | 141 | 12 | 177 | 1.34e-26 | 101 |
| Msa1181800 | AT3G61400.1 | 34.132 | 167 | 69 | 2 | 15 | 141 | 12 | 177 | 3.47e-26 | 101 |
Find 30 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACAAAAGCTGGTGTAAA+AGG | 0.285364 | 8_1:+16335065 | Msa1181800:CDS |
| TCTTCTGGTTTGAGAGTATC+AGG | 0.295106 | 8_1:-16335482 | None:intergenic |
| CACAGCACAGGAAACTCTTC+TGG | 0.345221 | 8_1:-16335497 | None:intergenic |
| TTGGCTTTCTCATGTTTGTC+AGG | 0.408748 | 8_1:-16335137 | None:intergenic |
| ATAGCTCACCAGCACTCAAT+TGG | 0.417970 | 8_1:+16335429 | Msa1181800:CDS |
| AATAACATGGCTTGTGTTGT+TGG | 0.428788 | 8_1:-16335156 | None:intergenic |
| CATGTTTGTCAGGTTGATGA+TGG | 0.437515 | 8_1:-16335127 | None:intergenic |
| AAGAGTTTCCTGTGCTGTGC+AGG | 0.457821 | 8_1:+16335501 | Msa1181800:CDS |
| GTTCTTTCAATATAGAATCA+AGG | 0.486469 | 8_1:-16335028 | None:intergenic |
| TTCAATATAGAATCAAGGTT+AGG | 0.492206 | 8_1:-16335023 | None:intergenic |
| ATCTCCTCAAGAACACTCAA+AGG | 0.510634 | 8_1:-16335299 | None:intergenic |
| GAGTGTTCTTGAGGAGATGA+AGG | 0.513387 | 8_1:+16335304 | Msa1181800:CDS |
| GGTGTAAAAGGACTTGTTGA+TGG | 0.518526 | 8_1:+16335077 | Msa1181800:CDS |
| TATAGAATCAAGGTTAGGCT+TGG | 0.520854 | 8_1:-16335018 | None:intergenic |
| GCTCACCAGCACTCAATTGG+AGG | 0.527842 | 8_1:+16335432 | Msa1181800:CDS |
| CTATCCCTCCAATTGAGTGC+TGG | 0.534831 | 8_1:-16335437 | None:intergenic |
| TCTCCTCAAGAACACTCAAA+GGG | 0.535297 | 8_1:-16335298 | None:intergenic |
| GGTTGATGATGGAATAAACT+TGG | 0.541944 | 8_1:-16335116 | None:intergenic |
| AGATGAAGGATGGTGTGAAG+AGG | 0.547649 | 8_1:+16335318 | Msa1181800:CDS |
| AATCCCTTTGAGTGTTCTTG+AGG | 0.553310 | 8_1:+16335295 | Msa1181800:CDS |
| TGTGAAGAGGTTTCATGAGA+TGG | 0.568486 | 8_1:+16335331 | Msa1181800:CDS |
| GAATTTGATGAAACAAAAGC+TGG | 0.578863 | 8_1:+16335056 | Msa1181800:CDS |
| AAAATTACTATTATAAACAA+AGG | 0.603110 | 8_1:-16335399 | None:intergenic |
| GTTAGGCTTGGTTGTACCCG+CGG | 0.609084 | 8_1:-16335006 | None:intergenic |
| TATACATACCTGCACAGCAC+AGG | 0.626589 | 8_1:-16335509 | None:intergenic |
| CTCACCAGCACTCAATTGGA+GGG | 0.626812 | 8_1:+16335433 | Msa1181800:CDS |
| GTTCTTGAGGAGATGAAGGA+TGG | 0.628456 | 8_1:+16335308 | Msa1181800:CDS |
| TCTGGTTTGAGAGTATCAGG+TGG | 0.638557 | 8_1:-16335479 | None:intergenic |
| GGTCTATGACAGGAATAACA+TGG | 0.670694 | 8_1:-16335169 | None:intergenic |
| GTAAAAGGACTTGTTGATGG+AGG | 0.724997 | 8_1:+16335080 | Msa1181800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTACTATTATAAACAA+AGG | - | chr8_1:16335402-16335421 | None:intergenic | 10.0% |
| ! | TTCAATATAGAATCAAGGTT+AGG | - | chr8_1:16335026-16335045 | None:intergenic | 25.0% |
| ! | GTTCTTTCAATATAGAATCA+AGG | - | chr8_1:16335031-16335050 | None:intergenic | 25.0% |
| ! | CTTTATTGTCAATCTTATCA+AGG | - | chr8_1:16335193-16335212 | None:intergenic | 25.0% |
| !!! | TTTTTTCAGGTTGTTAATCA+TGG | + | chr8_1:16335272-16335291 | Msa1181800:intron | 25.0% |
| ! | TTTATTTGCTCCTTGAAATT+TGG | + | chr8_1:16335547-16335566 | Msa1181800:intron | 25.0% |
| ! | ATGATCATAACCAAATTTCA+AGG | - | chr8_1:16335560-16335579 | None:intergenic | 25.0% |
| GAATTTGATGAAACAAAAGC+TGG | + | chr8_1:16335056-16335075 | Msa1181800:CDS | 30.0% | |
| AAAGATCCAAGTATTCATCA+AGG | + | chr8_1:16335209-16335228 | Msa1181800:intron | 30.0% | |
| AAGATCCAAGTATTCATCAA+GGG | + | chr8_1:16335210-16335229 | Msa1181800:intron | 30.0% | |
| !!! | TGAAACTTGAGGTTTTTTTC+AGG | + | chr8_1:16335259-16335278 | Msa1181800:intron | 30.0% |
| GTAGCACTAAAATTTCAGAT+TGG | + | chr8_1:16335582-16335601 | Msa1181800:intron | 30.0% | |
| TATAGAATCAAGGTTAGGCT+TGG | - | chr8_1:16335021-16335040 | None:intergenic | 35.0% | |
| GAAACAAAAGCTGGTGTAAA+AGG | + | chr8_1:16335065-16335084 | Msa1181800:CDS | 35.0% | |
| !! | GGTTGATGATGGAATAAACT+TGG | - | chr8_1:16335119-16335138 | None:intergenic | 35.0% |
| ! | AATAACATGGCTTGTGTTGT+TGG | - | chr8_1:16335159-16335178 | None:intergenic | 35.0% |
| ATCTTATCAAGGTCTATGAC+AGG | - | chr8_1:16335182-16335201 | None:intergenic | 35.0% | |
| ACAATCCCTTGATGAATACT+TGG | - | chr8_1:16335218-16335237 | None:intergenic | 35.0% | |
| AGGGATTGTTAGCAAAATCA+AGG | + | chr8_1:16335229-16335248 | Msa1181800:intron | 35.0% | |
| !! | GGTGTAAAAGGACTTGTTGA+TGG | + | chr8_1:16335077-16335096 | Msa1181800:CDS | 40.0% |
| !! | GTAAAAGGACTTGTTGATGG+AGG | + | chr8_1:16335080-16335099 | Msa1181800:CDS | 40.0% |
| !! | CATGTTTGTCAGGTTGATGA+TGG | - | chr8_1:16335130-16335149 | None:intergenic | 40.0% |
| ! | TTGGCTTTCTCATGTTTGTC+AGG | - | chr8_1:16335140-16335159 | None:intergenic | 40.0% |
| GGTCTATGACAGGAATAACA+TGG | - | chr8_1:16335172-16335191 | None:intergenic | 40.0% | |
| ! | AAGGAAGCATGTGAAACTTG+AGG | + | chr8_1:16335248-16335267 | Msa1181800:intron | 40.0% |
| AATCCCTTTGAGTGTTCTTG+AGG | + | chr8_1:16335295-16335314 | Msa1181800:CDS | 40.0% | |
| TCTCCTCAAGAACACTCAAA+GGG | - | chr8_1:16335301-16335320 | None:intergenic | 40.0% | |
| ATCTCCTCAAGAACACTCAA+AGG | - | chr8_1:16335302-16335321 | None:intergenic | 40.0% | |
| TGTGAAGAGGTTTCATGAGA+TGG | + | chr8_1:16335331-16335350 | Msa1181800:CDS | 40.0% | |
| !! | TCTTCTGGTTTGAGAGTATC+AGG | - | chr8_1:16335485-16335504 | None:intergenic | 40.0% |
| GAGTGTTCTTGAGGAGATGA+AGG | + | chr8_1:16335304-16335323 | Msa1181800:CDS | 45.0% | |
| GTTCTTGAGGAGATGAAGGA+TGG | + | chr8_1:16335308-16335327 | Msa1181800:CDS | 45.0% | |
| AGATGAAGGATGGTGTGAAG+AGG | + | chr8_1:16335318-16335337 | Msa1181800:CDS | 45.0% | |
| ATAGCTCACCAGCACTCAAT+TGG | + | chr8_1:16335429-16335448 | Msa1181800:CDS | 45.0% | |
| !! | TCTGGTTTGAGAGTATCAGG+TGG | - | chr8_1:16335482-16335501 | None:intergenic | 45.0% |
| TATACATACCTGCACAGCAC+AGG | - | chr8_1:16335512-16335531 | None:intergenic | 45.0% | |
| CTCACCAGCACTCAATTGGA+GGG | + | chr8_1:16335433-16335452 | Msa1181800:CDS | 50.0% | |
| CTATCCCTCCAATTGAGTGC+TGG | - | chr8_1:16335440-16335459 | None:intergenic | 50.0% | |
| CACAGCACAGGAAACTCTTC+TGG | - | chr8_1:16335500-16335519 | None:intergenic | 50.0% | |
| AAGAGTTTCCTGTGCTGTGC+AGG | + | chr8_1:16335501-16335520 | Msa1181800:CDS | 50.0% | |
| ! | GTTAGGCTTGGTTGTACCCG+CGG | - | chr8_1:16335009-16335028 | None:intergenic | 55.0% |
| GCTCACCAGCACTCAATTGG+AGG | + | chr8_1:16335432-16335451 | Msa1181800:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 16334999 | 16335630 | 16334999 | ID=Msa1181800;Name=Msa1181800 |
| chr8_1 | mRNA | 16334999 | 16335630 | 16334999 | ID=Msa1181800-mRNA-1;Parent=Msa1181800;Name=Msa1181800-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.66|1|1|3|0|151 |
| chr8_1 | exon | 16334999 | 16335181 | 16334999 | ID=Msa1181800-mRNA-1:exon:6134;Parent=Msa1181800-mRNA-1 |
| chr8_1 | exon | 16335281 | 16335522 | 16335281 | ID=Msa1181800-mRNA-1:exon:6135;Parent=Msa1181800-mRNA-1 |
| chr8_1 | exon | 16335600 | 16335630 | 16335600 | ID=Msa1181800-mRNA-1:exon:6136;Parent=Msa1181800-mRNA-1 |
| chr8_1 | CDS | 16334999 | 16335181 | 16334999 | ID=Msa1181800-mRNA-1:cds;Parent=Msa1181800-mRNA-1 |
| chr8_1 | CDS | 16335281 | 16335522 | 16335281 | ID=Msa1181800-mRNA-1:cds;Parent=Msa1181800-mRNA-1 |
| chr8_1 | CDS | 16335600 | 16335630 | 16335600 | ID=Msa1181800-mRNA-1:cds;Parent=Msa1181800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
