Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182560 | I3SS52 | 95.181 | 166 | 8 | 0 | 1 | 166 | 1 | 166 | 6.23e-114 | 329 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1182560 | Msa1229810 | 0.931624 | 2.868870e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182560 | MtrunA17_Chr8g0337391 | 95.181 | 166 | 8 | 0 | 1 | 166 | 1 | 166 | 1.20e-117 | 329 |
| Msa1182560 | MtrunA17_Chr8g0335231 | 29.167 | 120 | 82 | 2 | 33 | 152 | 32 | 148 | 9.65e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182560 | AT1G64850.1 | 67.308 | 156 | 51 | 0 | 1 | 156 | 1 | 156 | 1.80e-77 | 228 |
| Msa1182560 | AT4G37445.2 | 31.008 | 129 | 78 | 3 | 39 | 163 | 20 | 141 | 7.51e-14 | 65.5 |
| Msa1182560 | AT4G37445.1 | 31.008 | 129 | 78 | 3 | 39 | 163 | 36 | 157 | 1.06e-13 | 65.5 |
Find 55 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATACAGCGATTCTTATTT+AGG | 0.199783 | 8_1:-17698901 | None:intergenic |
| CTGCGCCTTGATTCTTTCAT+TGG | 0.232249 | 8_1:-17699008 | None:intergenic |
| TAAATAAGAATCGCTGTATT+TGG | 0.270159 | 8_1:+17698903 | Msa1182560:three_prime_UTR |
| CAGACTGGTCTCCCATCTTC+TGG | 0.317809 | 8_1:-17698769 | None:intergenic |
| AATTTAGGCGAATTGAGTTC+TGG | 0.320339 | 8_1:+17698972 | Msa1182560:three_prime_UTR |
| ACATAACTGAAAAGAGAAAA+TGG | 0.338996 | 8_1:+17695304 | None:intergenic |
| TGTAGCGTGTGCGTGGAAAT+TGG | 0.376347 | 8_1:+17695327 | Msa1182560:five_prime_UTR |
| CATAACATAGTCAACAAGTT+TGG | 0.382241 | 8_1:+17695530 | Msa1182560:five_prime_UTR |
| CTTGATTCTTTCATTGGCCC+TGG | 0.383148 | 8_1:-17699002 | None:intergenic |
| TTCTTATAAAACAGAATGAT+AGG | 0.392550 | 8_1:+17698823 | Msa1182560:three_prime_UTR |
| TGAAAATCAACGCTATGCTT+TGG | 0.402636 | 8_1:-17695433 | None:intergenic |
| GATATCAACAAGATTATTCC+TGG | 0.423948 | 8_1:+17696859 | Msa1182560:CDS |
| CAGAAGATGGGAGACCAGTC+TGG | 0.428838 | 8_1:+17698770 | Msa1182560:CDS |
| ATGCATAGCATAGCCTTTGA+TGG | 0.431609 | 8_1:-17699061 | None:intergenic |
| AACAAAACAAAACATTATCA+TGG | 0.438334 | 8_1:+17695569 | Msa1182560:exon |
| TCCAATGCCAGGGACACCTT+CGG | 0.439714 | 8_1:-17698681 | None:intergenic |
| ACCGAAGGTGTCCCTGGCAT+TGG | 0.448225 | 8_1:+17698680 | Msa1182560:CDS |
| AGTTGTGTGGTTCCAGAAGA+TGG | 0.456737 | 8_1:+17698757 | Msa1182560:CDS |
| ATTTAGGCGAATTGAGTTCT+GGG | 0.466964 | 8_1:+17698973 | Msa1182560:three_prime_UTR |
| AGAGCCACCGAAGGTGTCCC+TGG | 0.468274 | 8_1:+17698674 | Msa1182560:CDS |
| TTGAGTTCTGGGGACTCACC+AGG | 0.477039 | 8_1:+17698984 | Msa1182560:three_prime_UTR |
| TCAGAAACTTATCATCACTT+TGG | 0.481962 | 8_1:+17698619 | Msa1182560:CDS |
| TTTGTTGCCATTGCAACACT+TGG | 0.485125 | 8_1:-17698650 | None:intergenic |
| ACTCTTGACTTTACCATCAA+AGG | 0.488999 | 8_1:+17699048 | Msa1182560:three_prime_UTR |
| CAAATCTTCGATAAATTACA+AGG | 0.489770 | 8_1:+17695594 | Msa1182560:CDS |
| AGGGGTGCATAAATTGCATT+GGG | 0.501336 | 8_1:-17698722 | None:intergenic |
| AAGGGGTGCATAAATTGCAT+TGG | 0.507133 | 8_1:-17698723 | None:intergenic |
| GAAGTTTAAGAGTGGAGTGA+AGG | 0.517037 | 8_1:-17695499 | None:intergenic |
| TGGCAATACTATGTACAATC+AGG | 0.524648 | 8_1:-17698851 | None:intergenic |
| CAGGGCCAATGAAAGAATCA+AGG | 0.526519 | 8_1:+17699003 | Msa1182560:three_prime_UTR |
| TTTGATGGAGGATCGAAATG+AGG | 0.530263 | 8_1:-17696883 | None:intergenic |
| ACACAACTGCAAGGGTAACA+AGG | 0.552118 | 8_1:-17698742 | None:intergenic |
| TTGTCTTTGAAGTTTAAGAG+TGG | 0.554071 | 8_1:-17695507 | None:intergenic |
| ACAAAACAAAACATTATCAT+GGG | 0.565013 | 8_1:+17695570 | Msa1182560:exon |
| TGTCCCTGGCATTGGAAAAG+TGG | 0.577787 | 8_1:+17698688 | Msa1182560:CDS |
| TTGTTACCCTTGCAGTTGTG+TGG | 0.580042 | 8_1:+17698744 | Msa1182560:CDS |
| CATTTAATGCAGGTGAGGAG+TGG | 0.581643 | 8_1:+17696602 | Msa1182560:intron |
| AATGCCAGGGACACCTTCGG+TGG | 0.584890 | 8_1:-17698678 | None:intergenic |
| TCTGGAACCACACAACTGCA+AGG | 0.586781 | 8_1:-17698751 | None:intergenic |
| GGAGGATCGAAATGAGGACC+AGG | 0.588209 | 8_1:-17696877 | None:intergenic |
| CACAACTGCAAGGGTAACAA+GGG | 0.588713 | 8_1:-17698741 | None:intergenic |
| GAATGTGATATGAACTTGGA+TGG | 0.590741 | 8_1:+17698527 | Msa1182560:CDS |
| AACTGTCAGACAAATCATGC+AGG | 0.595607 | 8_1:+17696909 | Msa1182560:CDS |
| AATGTGATATGAACTTGGAT+GGG | 0.624339 | 8_1:+17698528 | Msa1182560:CDS |
| GTTGTGTGGTTCCAGAAGAT+GGG | 0.625857 | 8_1:+17698758 | Msa1182560:CDS |
| CTGGAACCACACAACTGCAA+GGG | 0.636117 | 8_1:-17698750 | None:intergenic |
| GCAGGAATGTGATATGAACT+TGG | 0.636985 | 8_1:+17698523 | Msa1182560:intron |
| TTTAGGCGAATTGAGTTCTG+GGG | 0.643553 | 8_1:+17698974 | Msa1182560:three_prime_UTR |
| ATGTGATATGAACTTGGATG+GGG | 0.646533 | 8_1:+17698529 | Msa1182560:CDS |
| TGTAGCACCAAGTGTTGCAA+TGG | 0.657378 | 8_1:+17698643 | Msa1182560:CDS |
| GTACTACTCAGATTCCAGAC+TGG | 0.660523 | 8_1:-17698784 | None:intergenic |
| AAAATGGTGTAGCGTGTGCG+TGG | 0.664549 | 8_1:+17695320 | Msa1182560:five_prime_UTR |
| TGAGTTCTGGGGACTCACCA+GGG | 0.669924 | 8_1:+17698985 | Msa1182560:three_prime_UTR |
| ACAACTGCAAGGGTAACAAG+GGG | 0.709809 | 8_1:-17698740 | None:intergenic |
| CAATTCTAACATGAAAACAG+TGG | 0.712226 | 8_1:-17698871 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTATCTTTTATTTTT+TGG | + | chr8_1:17695674-17695693 | Msa1182560:intron | 10.0% |
| !!! | AAAATTTACTTTTACAAATT+TGG | + | chr8_1:17697827-17697846 | Msa1182560:intron | 10.0% |
| !! | GAAATTTAGATATATAATAT+AGG | + | chr8_1:17698403-17698422 | Msa1182560:intron | 10.0% |
| !!! | AATTTTATTTATCAGAAAAA+AGG | - | chr8_1:17698956-17698975 | None:intergenic | 10.0% |
| !!! | TTTTCTGATAAATAAAATTT+AGG | + | chr8_1:17698957-17698976 | Msa1182560:three_prime_UTR | 10.0% |
| !!! | TGTTTTGTTTGATAATAATA+AGG | - | chr8_1:17695558-17695577 | None:intergenic | 15.0% |
| !! | TAAATAAACAAGTATATAGT+TGG | - | chr8_1:17696958-17696977 | None:intergenic | 15.0% |
| !! | ACAATTAAATAGATAATACA+TGG | - | chr8_1:17697153-17697172 | None:intergenic | 15.0% |
| !! | AACAAAACAAAACATTATCA+TGG | + | chr8_1:17695569-17695588 | Msa1182560:exon | 20.0% |
| !! | ACAAAACAAAACATTATCAT+GGG | + | chr8_1:17695570-17695589 | Msa1182560:exon | 20.0% |
| !! | TAAAGAAAAATCAGCAAAAA+AGG | - | chr8_1:17695662-17695681 | None:intergenic | 20.0% |
| !! | TGGAATTAAGGAAATTTAAT+TGG | + | chr8_1:17695868-17695887 | Msa1182560:intron | 20.0% |
| !!! | TTGATTTATTTGTTATCTTC+TGG | + | chr8_1:17696471-17696490 | Msa1182560:intron | 20.0% |
| !!! | AGTTTTATAATTCTCTACAA+GGG | + | chr8_1:17697332-17697351 | Msa1182560:intron | 20.0% |
| !!! | TTTTTAATCTTTAAGAAGCT+CGG | + | chr8_1:17697553-17697572 | Msa1182560:intron | 20.0% |
| !!! | CTGATAATACTAAGTTTTTA+AGG | - | chr8_1:17697732-17697751 | None:intergenic | 20.0% |
| !! | TTAGTATTATCAGATTCATA+AGG | + | chr8_1:17697739-17697758 | Msa1182560:intron | 20.0% |
| !!! | TTTTATTCCAACAATTTTCA+TGG | - | chr8_1:17697809-17697828 | None:intergenic | 20.0% |
| !! | TTGTACTAAATAGAATATCA+TGG | - | chr8_1:17698099-17698118 | None:intergenic | 20.0% |
| !!! | TCATTCTGTTTTATAAGAAA+TGG | - | chr8_1:17698822-17698841 | None:intergenic | 20.0% |
| !! | TTCTTATAAAACAGAATGAT+AGG | + | chr8_1:17698823-17698842 | Msa1182560:three_prime_UTR | 20.0% |
| ! | CAAATCTTCGATAAATTACA+AGG | + | chr8_1:17695594-17695613 | Msa1182560:CDS | 25.0% |
| ! | AAAAAAGGTAATTCCAAAAC+AGG | - | chr8_1:17695647-17695666 | None:intergenic | 25.0% |
| ! | GTAAGTAACACAGTTTATTA+TGG | + | chr8_1:17695848-17695867 | Msa1182560:intron | 25.0% |
| ! | CACAGTTTATTATGGAATTA+AGG | + | chr8_1:17695856-17695875 | Msa1182560:intron | 25.0% |
| ! | GAAATTTAATTGGAGTCTTA+TGG | + | chr8_1:17695878-17695897 | Msa1182560:intron | 25.0% |
| ! | CTTTCTATTAATCAAGCTTA+AGG | - | chr8_1:17696113-17696132 | None:intergenic | 25.0% |
| ! | GACATGATTTATCATAGAAA+TGG | - | chr8_1:17696520-17696539 | None:intergenic | 25.0% |
| ! | AGTGGAGAAAAAAACAAATT+AGG | + | chr8_1:17696620-17696639 | Msa1182560:CDS | 25.0% |
| !! | AATTGTTTATACGAGAGTTT+TGG | + | chr8_1:17697167-17697186 | Msa1182560:intron | 25.0% |
| !!! | CAGTTTTATAATTCTCTACA+AGG | + | chr8_1:17697331-17697350 | Msa1182560:intron | 25.0% |
| !! | GTTTTATAATTCTCTACAAG+GGG | + | chr8_1:17697333-17697352 | Msa1182560:intron | 25.0% |
| !!! | TATAGTTTTTGCTTTGGAAT+TGG | + | chr8_1:17697522-17697541 | Msa1182560:intron | 25.0% |
| ! | TCAGTAAACATAATTCACTT+AGG | + | chr8_1:17697677-17697696 | Msa1182560:intron | 25.0% |
| ! | CAGTAAACATAATTCACTTA+GGG | + | chr8_1:17697678-17697697 | Msa1182560:intron | 25.0% |
| ! | TTCAATACCATGAAAATTGT+TGG | + | chr8_1:17697799-17697818 | Msa1182560:intron | 25.0% |
| ! | TTGTTAAATAACAGGTACAA+TGG | + | chr8_1:17698034-17698053 | Msa1182560:intron | 25.0% |
| !!! | TGTTTTAACATAGTCAAACA+TGG | - | chr8_1:17698369-17698388 | None:intergenic | 25.0% |
| !! | AAATACAGCGATTCTTATTT+AGG | - | chr8_1:17698904-17698923 | None:intergenic | 25.0% |
| ! | TAAATAAGAATCGCTGTATT+TGG | + | chr8_1:17698903-17698922 | Msa1182560:three_prime_UTR | 25.0% |
| !! | TTGTCTTTGAAGTTTAAGAG+TGG | - | chr8_1:17695510-17695529 | None:intergenic | 30.0% |
| CATAACATAGTCAACAAGTT+TGG | + | chr8_1:17695530-17695549 | Msa1182560:five_prime_UTR | 30.0% | |
| ! | TCTTTCTTTCTTTCCTGTTT+TGG | + | chr8_1:17695631-17695650 | Msa1182560:intron | 30.0% |
| ! | TTACAACAGCTTGATTTTAG+AGG | + | chr8_1:17695802-17695821 | Msa1182560:intron | 30.0% |
| ! | TTAATTGGAGTCTTATGGTA+CGG | + | chr8_1:17695883-17695902 | Msa1182560:intron | 30.0% |
| CATTTGATTGAATCTGAATG+AGG | + | chr8_1:17695928-17695947 | Msa1182560:intron | 30.0% | |
| !! | TTGAGTTGATCAATCATCTT+AGG | - | chr8_1:17695978-17695997 | None:intergenic | 30.0% |
| ATCAACTCAAGTATGATTTC+TGG | + | chr8_1:17695988-17696007 | Msa1182560:intron | 30.0% | |
| ! | CTTTATAGCACTAACACTTT+TGG | + | chr8_1:17696133-17696152 | Msa1182560:intron | 30.0% |
| AAACACATGATACTTGATCA+TGG | - | chr8_1:17696354-17696373 | None:intergenic | 30.0% | |
| GAAAAGTTGCATAAATCCAT+AGG | + | chr8_1:17696439-17696458 | Msa1182560:intron | 30.0% | |
| TGTATTCATTCATGTACTCA+AGG | + | chr8_1:17696541-17696560 | Msa1182560:intron | 30.0% | |
| GATATCAACAAGATTATTCC+TGG | + | chr8_1:17696859-17696878 | Msa1182560:CDS | 30.0% | |
| AATGCATGTAGTGCATTATA+TGG | - | chr8_1:17697048-17697067 | None:intergenic | 30.0% | |
| TAATGGAATTGATGAACAAG+TGG | - | chr8_1:17697093-17697112 | None:intergenic | 30.0% | |
| ACTCTTCACTGTGATAATAA+TGG | - | chr8_1:17697110-17697129 | None:intergenic | 30.0% | |
| ATACTCAGTAAAAGTGACAA+TGG | + | chr8_1:17697240-17697259 | Msa1182560:intron | 30.0% | |
| TACTCAGTAAAAGTGACAAT+GGG | + | chr8_1:17697241-17697260 | Msa1182560:intron | 30.0% | |
| TGGAATGAAAATTGTTGAGA+AGG | + | chr8_1:17697278-17697297 | Msa1182560:intron | 30.0% | |
| !!! | TAGGGTTTTTAAGTCAATGA+TGG | + | chr8_1:17697392-17697411 | Msa1182560:intron | 30.0% |
| GGTATAACATAGAACTACAA+CGG | + | chr8_1:17697413-17697432 | Msa1182560:intron | 30.0% | |
| ! | AGTGCTTATAGTTTTTGCTT+TGG | + | chr8_1:17697516-17697535 | Msa1182560:intron | 30.0% |
| TTTGACAGTATTCTTGAGAA+AGG | + | chr8_1:17697616-17697635 | Msa1182560:intron | 30.0% | |
| AAAAATTGCATAGTACATGC+TGG | + | chr8_1:17697874-17697893 | Msa1182560:intron | 30.0% | |
| AAAATTGCATAGTACATGCT+GGG | + | chr8_1:17697875-17697894 | Msa1182560:intron | 30.0% | |
| ACGCAATGTTGTTAAATAAC+AGG | + | chr8_1:17698026-17698045 | Msa1182560:intron | 30.0% | |
| !! | AGTACAAAGTGTTGTCAAAT+AGG | + | chr8_1:17698112-17698131 | Msa1182560:intron | 30.0% |
| !! | AAAGAAGTGTTGTCAAATAG+CGG | + | chr8_1:17698203-17698222 | Msa1182560:intron | 30.0% |
| ! | CATGAAAATTTGTTCGTAGT+TGG | - | chr8_1:17698451-17698470 | None:intergenic | 30.0% |
| TTCATGCATGTTATAGTTCT+TGG | + | chr8_1:17698465-17698484 | Msa1182560:intron | 30.0% | |
| AATGTGATATGAACTTGGAT+GGG | + | chr8_1:17698528-17698547 | Msa1182560:CDS | 30.0% | |
| TCAGAAACTTATCATCACTT+TGG | + | chr8_1:17698619-17698638 | Msa1182560:CDS | 30.0% | |
| CAATTCTAACATGAAAACAG+TGG | - | chr8_1:17698874-17698893 | None:intergenic | 30.0% | |
| TGAAAATCAACGCTATGCTT+TGG | - | chr8_1:17695436-17695455 | None:intergenic | 35.0% | |
| CATGTACATCATTTGTAGGT+GGG | - | chr8_1:17695702-17695721 | None:intergenic | 35.0% | |
| CATCCATGTACATCATTTGT+AGG | - | chr8_1:17695706-17695725 | None:intergenic | 35.0% | |
| !! | CTGTGTTACTTACACAATCA+AGG | - | chr8_1:17695841-17695860 | None:intergenic | 35.0% |
| !! | GAGTTTGCTTTTGTCAGATA+TGG | + | chr8_1:17696015-17696034 | Msa1182560:intron | 35.0% |
| ! | ATAGCACTAACACTTTTGGT+AGG | + | chr8_1:17696137-17696156 | Msa1182560:intron | 35.0% |
| ! | TCGGTGCTTCATAGATAAAA+AGG | + | chr8_1:17696279-17696298 | Msa1182560:intron | 35.0% |
| ACATGATACTTGATCATGGA+GGG | - | chr8_1:17696350-17696369 | None:intergenic | 35.0% | |
| ! | TATGCAACTTTTCAGCTCAA+AGG | - | chr8_1:17696432-17696451 | None:intergenic | 35.0% |
| ATTCATGTACTCAAGGAATC+TGG | + | chr8_1:17696548-17696567 | Msa1182560:intron | 35.0% | |
| TATGCCATGACATTTAATGC+AGG | + | chr8_1:17696592-17696611 | Msa1182560:intron | 35.0% | |
| ! | TGTCTGACAGTTTCTTTTGA+TGG | - | chr8_1:17696901-17696920 | None:intergenic | 35.0% |
| ! | CCGGCATATAATCATTTTCA+CGG | - | chr8_1:17697000-17697019 | None:intergenic | 35.0% |
| CCGTGAAAATGATTATATGC+CGG | + | chr8_1:17696997-17697016 | Msa1182560:intron | 35.0% | |
| CGTGAAAATGATTATATGCC+GGG | + | chr8_1:17696998-17697017 | Msa1182560:intron | 35.0% | |
| TATTATGCTACAAAGCAACC+CGG | - | chr8_1:17697019-17697038 | None:intergenic | 35.0% | |
| ! | TTCTCCGTCTTTTCAATGAT+AGG | + | chr8_1:17697067-17697086 | Msa1182560:intron | 35.0% |
| !!! | ATACGAGAGTTTTGGTTCAT+TGG | + | chr8_1:17697175-17697194 | Msa1182560:intron | 35.0% |
| AATGGGAGATGTTCAAAATG+TGG | + | chr8_1:17697258-17697277 | Msa1182560:intron | 35.0% | |
| !!! | CTTCAACGTTTTGGTTTTCA+TGG | + | chr8_1:17697302-17697321 | Msa1182560:intron | 35.0% |
| TTATAATTCTCTACAAGGGG+TGG | + | chr8_1:17697336-17697355 | Msa1182560:intron | 35.0% | |
| TATAATTCTCTACAAGGGGT+GGG | + | chr8_1:17697337-17697356 | Msa1182560:intron | 35.0% | |
| GGATTTAAACAGTGCAGTAA+GGG | + | chr8_1:17697459-17697478 | Msa1182560:intron | 35.0% | |
| GAGTGATTCAAAACTGCTAT+CGG | + | chr8_1:17697771-17697790 | Msa1182560:intron | 35.0% | |
| !! | ACAAAGTGTTGTCAAATAGG+AGG | + | chr8_1:17698115-17698134 | Msa1182560:intron | 35.0% |
| TGTCAAATAGGAGGCTATAA+CGG | + | chr8_1:17698124-17698143 | Msa1182560:intron | 35.0% | |
| GCTATTTGACAACACTTCTT+TGG | - | chr8_1:17698204-17698223 | None:intergenic | 35.0% | |
| GAGATCCAGAAATGATAACA+CGG | + | chr8_1:17698275-17698294 | Msa1182560:intron | 35.0% | |
| ATCATAGACCATGAGTTGTT+GGG | + | chr8_1:17698315-17698334 | Msa1182560:intron | 35.0% | |
| AAAATGTTCCCAACAACTCA+TGG | - | chr8_1:17698326-17698345 | None:intergenic | 35.0% | |
| GTCAAACATGGAAAGAAAGA+TGG | - | chr8_1:17698357-17698376 | None:intergenic | 35.0% | |
| GAATGTGATATGAACTTGGA+TGG | + | chr8_1:17698527-17698546 | Msa1182560:CDS | 35.0% | |
| ATGTGATATGAACTTGGATG+GGG | + | chr8_1:17698529-17698548 | Msa1182560:CDS | 35.0% | |
| !!! | ATGTATCAGCTGTCATTTTC+TGG | - | chr8_1:17698586-17698605 | None:intergenic | 35.0% |
| TGGCAATACTATGTACAATC+AGG | - | chr8_1:17698854-17698873 | None:intergenic | 35.0% | |
| AATTTAGGCGAATTGAGTTC+TGG | + | chr8_1:17698972-17698991 | Msa1182560:three_prime_UTR | 35.0% | |
| ATTTAGGCGAATTGAGTTCT+GGG | + | chr8_1:17698973-17698992 | Msa1182560:three_prime_UTR | 35.0% | |
| ACTCTTGACTTTACCATCAA+AGG | + | chr8_1:17699048-17699067 | Msa1182560:three_prime_UTR | 35.0% | |
| GAAGTTTAAGAGTGGAGTGA+AGG | - | chr8_1:17695502-17695521 | None:intergenic | 40.0% | |
| CCATGTACATCATTTGTAGG+TGG | - | chr8_1:17695703-17695722 | None:intergenic | 40.0% | |
| CCACCTACAAATGATGTACA+TGG | + | chr8_1:17695700-17695719 | Msa1182560:intron | 40.0% | |
| AACACACACACATAGACACA+GGG | - | chr8_1:17695778-17695797 | None:intergenic | 40.0% | |
| AAACACACACACATAGACAC+AGG | - | chr8_1:17695779-17695798 | None:intergenic | 40.0% | |
| !! | CTCAAGTATGATTTCTGGCT+TGG | + | chr8_1:17695993-17696012 | Msa1182560:intron | 40.0% |
| TGGCTCACTTTACTGAATAG+CGG | + | chr8_1:17696035-17696054 | Msa1182560:intron | 40.0% | |
| GTTGTGTTCGATGTCTATGT+CGG | + | chr8_1:17696260-17696279 | Msa1182560:intron | 40.0% | |
| CACATGATACTTGATCATGG+AGG | - | chr8_1:17696351-17696370 | None:intergenic | 40.0% | |
| AGGCTGTTAGAACAGTAACT+TGG | - | chr8_1:17696412-17696431 | None:intergenic | 40.0% | |
| AGTTGCATAAATCCATAGGC+AGG | + | chr8_1:17696443-17696462 | Msa1182560:intron | 40.0% | |
| GTTGCATAAATCCATAGGCA+GGG | + | chr8_1:17696444-17696463 | Msa1182560:intron | 40.0% | |
| AAATCAATCAACCCTGCCTA+TGG | - | chr8_1:17696458-17696477 | None:intergenic | 40.0% | |
| CTCACCTGCATTAAATGTCA+TGG | - | chr8_1:17696599-17696618 | None:intergenic | 40.0% | |
| CATGACATTTAATGCAGGTG+AGG | + | chr8_1:17696597-17696616 | Msa1182560:intron | 40.0% | |
| TTTGATGGAGGATCGAAATG+AGG | - | chr8_1:17696886-17696905 | None:intergenic | 40.0% | |
| ! | CTGACAGTTTCTTTTGATGG+AGG | - | chr8_1:17696898-17696917 | None:intergenic | 40.0% |
| AACTGTCAGACAAATCATGC+AGG | + | chr8_1:17696909-17696928 | Msa1182560:CDS | 40.0% | |
| GTGGCCTATCATTGAAAAGA+CGG | - | chr8_1:17697074-17697093 | None:intergenic | 40.0% | |
| ! | TGAGAAGGACTTCAACGTTT+TGG | + | chr8_1:17697293-17697312 | Msa1182560:intron | 40.0% |
| TACTTAAGCAGAATGTCGCT+CGG | - | chr8_1:17697374-17697393 | None:intergenic | 40.0% | |
| AGCGACATTCTGCTTAAGTA+GGG | + | chr8_1:17697374-17697393 | Msa1182560:intron | 40.0% | |
| GGGATTTAAACAGTGCAGTA+AGG | + | chr8_1:17697458-17697477 | Msa1182560:intron | 40.0% | |
| TCAAGTTATCACCATGCACA+TGG | - | chr8_1:17697647-17697666 | None:intergenic | 40.0% | |
| TGCTTATTTGTACCAAGGCA+TGG | - | chr8_1:17697907-17697926 | None:intergenic | 40.0% | |
| ACCTCTGCTTATTTGTACCA+AGG | - | chr8_1:17697912-17697931 | None:intergenic | 40.0% | |
| CATGTCCGTGTTATCATTTC+TGG | - | chr8_1:17698283-17698302 | None:intergenic | 40.0% | |
| GATCATAGACCATGAGTTGT+TGG | + | chr8_1:17698314-17698333 | Msa1182560:intron | 40.0% | |
| GCAGGAATGTGATATGAACT+TGG | + | chr8_1:17698523-17698542 | Msa1182560:intron | 40.0% | |
| TTTGTTGCCATTGCAACACT+TGG | - | chr8_1:17698653-17698672 | None:intergenic | 40.0% | |
| ! | AGGGGTGCATAAATTGCATT+GGG | - | chr8_1:17698725-17698744 | None:intergenic | 40.0% |
| ! | AAGGGGTGCATAAATTGCAT+TGG | - | chr8_1:17698726-17698745 | None:intergenic | 40.0% |
| TTTAGGCGAATTGAGTTCTG+GGG | + | chr8_1:17698974-17698993 | Msa1182560:three_prime_UTR | 40.0% | |
| ATGCATAGCATAGCCTTTGA+TGG | - | chr8_1:17699064-17699083 | None:intergenic | 40.0% | |
| GGCTCACTTTACTGAATAGC+GGG | + | chr8_1:17696036-17696055 | Msa1182560:intron | 45.0% | |
| ! | ACACTTTTGGTAGGTGTGTC+CGG | + | chr8_1:17696146-17696165 | Msa1182560:intron | 45.0% |
| TGTCAGTGATGTGTAGGTGT+GGG | - | chr8_1:17696175-17696194 | None:intergenic | 45.0% | |
| TCAGACTGTCAGTGATGTGT+AGG | - | chr8_1:17696181-17696200 | None:intergenic | 45.0% | |
| TACTGCAGCCTCTATGTAGT+CGG | + | chr8_1:17696302-17696321 | Msa1182560:intron | 45.0% | |
| CATTTAATGCAGGTGAGGAG+TGG | + | chr8_1:17696602-17696621 | Msa1182560:intron | 45.0% | |
| GAGCGACATTCTGCTTAAGT+AGG | + | chr8_1:17697373-17697392 | Msa1182560:intron | 45.0% | |
| GCTATAGCACTGTCGCATAA+CGG | + | chr8_1:17697437-17697456 | Msa1182560:intron | 45.0% | |
| CTATAGCACTGTCGCATAAC+GGG | + | chr8_1:17697438-17697457 | Msa1182560:intron | 45.0% | |
| CAGTCTCAGAATACCTCGTA+GGG | + | chr8_1:17697576-17697595 | Msa1182560:intron | 45.0% | |
| CTTATTGCTTTCTCCCTACG+AGG | - | chr8_1:17697592-17697611 | None:intergenic | 45.0% | |
| GAAAGGATTCACCATGTGCA+TGG | + | chr8_1:17697633-17697652 | Msa1182560:intron | 45.0% | |
| TTGCATAGTACATGCTGGGT+TGG | + | chr8_1:17697879-17697898 | Msa1182560:intron | 45.0% | |
| TGCATAGTACATGCTGGGTT+GGG | + | chr8_1:17697880-17697899 | Msa1182560:intron | 45.0% | |
| GCCTTGGTACAAATAAGCAG+AGG | + | chr8_1:17697908-17697927 | Msa1182560:intron | 45.0% | |
| TTCCTGCGCATTGTTAAACG+AGG | - | chr8_1:17698510-17698529 | None:intergenic | 45.0% | |
| ! | TGTAGCACCAAGTGTTGCAA+TGG | + | chr8_1:17698643-17698662 | Msa1182560:CDS | 45.0% |
| ACAACTGCAAGGGTAACAAG+GGG | - | chr8_1:17698743-17698762 | None:intergenic | 45.0% | |
| CACAACTGCAAGGGTAACAA+GGG | - | chr8_1:17698744-17698763 | None:intergenic | 45.0% | |
| ACACAACTGCAAGGGTAACA+AGG | - | chr8_1:17698745-17698764 | None:intergenic | 45.0% | |
| TTGTTACCCTTGCAGTTGTG+TGG | + | chr8_1:17698744-17698763 | Msa1182560:CDS | 45.0% | |
| AGTTGTGTGGTTCCAGAAGA+TGG | + | chr8_1:17698757-17698776 | Msa1182560:CDS | 45.0% | |
| GTTGTGTGGTTCCAGAAGAT+GGG | + | chr8_1:17698758-17698777 | Msa1182560:CDS | 45.0% | |
| GTACTACTCAGATTCCAGAC+TGG | - | chr8_1:17698787-17698806 | None:intergenic | 45.0% | |
| CTTGATTCTTTCATTGGCCC+TGG | - | chr8_1:17699005-17699024 | None:intergenic | 45.0% | |
| CAGGGCCAATGAAAGAATCA+AGG | + | chr8_1:17699003-17699022 | Msa1182560:three_prime_UTR | 45.0% | |
| CTGCGCCTTGATTCTTTCAT+TGG | - | chr8_1:17699011-17699030 | None:intergenic | 45.0% | |
| AAAATGGTGTAGCGTGTGCG+TGG | + | chr8_1:17695320-17695339 | Msa1182560:five_prime_UTR | 50.0% | |
| TGTAGCGTGTGCGTGGAAAT+TGG | + | chr8_1:17695327-17695346 | Msa1182560:five_prime_UTR | 50.0% | |
| !! | ACTTTACTGAATAGCGGGCC+AGG | + | chr8_1:17696041-17696060 | Msa1182560:intron | 50.0% |
| CTGTCAGTGATGTGTAGGTG+TGG | - | chr8_1:17696176-17696195 | None:intergenic | 50.0% | |
| CTACGTCTCCGACTACATAG+AGG | - | chr8_1:17696313-17696332 | None:intergenic | 50.0% | |
| CTCTATGTAGTCGGAGACGT+AGG | + | chr8_1:17696311-17696330 | Msa1182560:intron | 50.0% | |
| TCTCTACAAGGGGTGGGAAT+AGG | + | chr8_1:17697343-17697362 | Msa1182560:intron | 50.0% | |
| GCAGTCTCAGAATACCTCGT+AGG | + | chr8_1:17697575-17697594 | Msa1182560:intron | 50.0% | |
| GCTATAGCACTGTCGCATAG+CGG | + | chr8_1:17698148-17698167 | Msa1182560:intron | 50.0% | |
| TGCCTCGTTTAACAATGCGC+AGG | + | chr8_1:17698505-17698524 | Msa1182560:intron | 50.0% | |
| GCAACAAAAAGAGCCACCGA+AGG | + | chr8_1:17698665-17698684 | Msa1182560:CDS | 50.0% | |
| ! | TGTCCCTGGCATTGGAAAAG+TGG | + | chr8_1:17698688-17698707 | Msa1182560:CDS | 50.0% |
| !! | GCACCACTTTTCCAATGCCA+GGG | - | chr8_1:17698694-17698713 | None:intergenic | 50.0% |
| !! | TGCACCACTTTTCCAATGCC+AGG | - | chr8_1:17698695-17698714 | None:intergenic | 50.0% |
| CTGGAACCACACAACTGCAA+GGG | - | chr8_1:17698753-17698772 | None:intergenic | 50.0% | |
| ! | TCTGGAACCACACAACTGCA+AGG | - | chr8_1:17698754-17698773 | None:intergenic | 50.0% |
| !! | TTACTGAATAGCGGGCCAGG+TGG | + | chr8_1:17696044-17696063 | Msa1182560:intron | 55.0% |
| GATGTGTAGGTGTGGGACAC+CGG | - | chr8_1:17696168-17696187 | None:intergenic | 55.0% | |
| GTCGGAGACGTAGGCACAAT+TGG | + | chr8_1:17696320-17696339 | Msa1182560:intron | 55.0% | |
| GGAGGATCGAAATGAGGACC+AGG | - | chr8_1:17696880-17696899 | None:intergenic | 55.0% | |
| TCCAATGCCAGGGACACCTT+CGG | - | chr8_1:17698684-17698703 | None:intergenic | 55.0% | |
| !! | CAGACTGGTCTCCCATCTTC+TGG | - | chr8_1:17698772-17698791 | None:intergenic | 55.0% |
| CAGAAGATGGGAGACCAGTC+TGG | + | chr8_1:17698770-17698789 | Msa1182560:CDS | 55.0% | |
| !! | TTGAGTTCTGGGGACTCACC+AGG | + | chr8_1:17698984-17699003 | Msa1182560:three_prime_UTR | 55.0% |
| !! | TGAGTTCTGGGGACTCACCA+GGG | + | chr8_1:17698985-17699004 | Msa1182560:three_prime_UTR | 55.0% |
| AATGCCAGGGACACCTTCGG+TGG | - | chr8_1:17698681-17698700 | None:intergenic | 60.0% | |
| !! | ACCGAAGGTGTCCCTGGCAT+TGG | + | chr8_1:17698680-17698699 | Msa1182560:CDS | 60.0% |
| ! | GCTGGGTTGGGACCATGCCT+TGG | + | chr8_1:17697892-17697911 | Msa1182560:intron | 65.0% |
| !! | AGAGCCACCGAAGGTGTCCC+TGG | + | chr8_1:17698674-17698693 | Msa1182560:CDS | 65.0% |
| AGCGGGCCAGGTGGCACGAG+CGG | + | chr8_1:17696053-17696072 | Msa1182560:intron | 75.0% | |
| CTCTCCCCGCTCGTGCCACC+TGG | - | chr8_1:17696062-17696081 | None:intergenic | 75.0% | |
| ! | GCGGGCCAGGTGGCACGAGC+GGG | + | chr8_1:17696054-17696073 | Msa1182560:intron | 80.0% |
| ! | CGGGCCAGGTGGCACGAGCG+GGG | + | chr8_1:17696055-17696074 | Msa1182560:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 17695319 | 17699095 | 17695319 | ID=Msa1182560;Name=Msa1182560 |
| chr8_1 | mRNA | 17695319 | 17699095 | 17695319 | ID=Msa1182560-mRNA-1;Parent=Msa1182560;Name=Msa1182560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=269|1|1|1|0.33|0.5|4|296|166 |
| chr8_1 | exon | 17695319 | 17695615 | 17695319 | ID=Msa1182560-mRNA-1:exon:6649;Parent=Msa1182560-mRNA-1 |
| chr8_1 | exon | 17696614 | 17696740 | 17696614 | ID=Msa1182560-mRNA-1:exon:6650;Parent=Msa1182560-mRNA-1 |
| chr8_1 | exon | 17696858 | 17696930 | 17696858 | ID=Msa1182560-mRNA-1:exon:6651;Parent=Msa1182560-mRNA-1 |
| chr8_1 | exon | 17698527 | 17699095 | 17698527 | ID=Msa1182560-mRNA-1:exon:6652;Parent=Msa1182560-mRNA-1 |
| chr8_1 | five_prime_UTR | 17695319 | 17695587 | 17695319 | ID=Msa1182560-mRNA-1:five_prime_utr;Parent=Msa1182560-mRNA-1 |
| chr8_1 | CDS | 17695588 | 17695615 | 17695588 | ID=Msa1182560-mRNA-1:cds;Parent=Msa1182560-mRNA-1 |
| chr8_1 | CDS | 17696614 | 17696740 | 17696614 | ID=Msa1182560-mRNA-1:cds;Parent=Msa1182560-mRNA-1 |
| chr8_1 | CDS | 17696858 | 17696930 | 17696858 | ID=Msa1182560-mRNA-1:cds;Parent=Msa1182560-mRNA-1 |
| chr8_1 | CDS | 17698527 | 17698799 | 17698527 | ID=Msa1182560-mRNA-1:cds;Parent=Msa1182560-mRNA-1 |
| chr8_1 | three_prime_UTR | 17698800 | 17699095 | 17698800 | ID=Msa1182560-mRNA-1:three_prime_utr;Parent=Msa1182560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
