Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229810 | XP_013443983.1 | 96.319 | 163 | 6 | 0 | 1 | 163 | 1 | 163 | 1.07e-112 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607540 | Msa1229810 | 0.810558 | 1.085867e-50 | -8.615850e-47 |
| Msa0626820 | Msa1229810 | 0.806869 | 6.670971e-50 | -8.615850e-47 |
| Msa0812760 | Msa1229810 | 0.803277 | 3.764340e-49 | -8.615850e-47 |
| Msa0220740 | Msa1229810 | 0.803752 | 3.000680e-49 | -8.615850e-47 |
| Msa1229810 | Msa1452240 | 0.806903 | 6.560630e-50 | -8.615850e-47 |
| Msa1182560 | Msa1229810 | 0.931624 | 2.868870e-94 | -8.615850e-47 |
| Msa1205130 | Msa1229810 | 0.807243 | 5.559468e-50 | -8.615850e-47 |
| Msa0554740 | Msa1229810 | 0.801487 | 8.797376e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229810 | MtrunA17_Chr8g0337391 | 96.319 | 163 | 6 | 0 | 1 | 163 | 1 | 163 | 9.86e-117 | 327 |
| Msa1229810 | MtrunA17_Chr8g0335231 | 29.915 | 117 | 79 | 2 | 36 | 152 | 35 | 148 | 1.25e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229810 | AT1G64850.1 | 66.026 | 156 | 53 | 0 | 1 | 156 | 1 | 156 | 6.12e-76 | 224 |
| Msa1229810 | AT4G37445.2 | 31.008 | 129 | 78 | 3 | 39 | 163 | 20 | 141 | 8.09e-14 | 65.5 |
| Msa1229810 | AT4G37445.1 | 31.008 | 129 | 78 | 3 | 39 | 163 | 36 | 157 | 1.24e-13 | 65.1 |
Find 56 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATACAGCGATTCTTATTT+AGG | 0.199783 | 8_2:-5762406 | None:intergenic |
| CTGCGCCTTGATTCTTTCAT+TGG | 0.232249 | 8_2:-5762514 | None:intergenic |
| TAAATAAGAATCGCTGTATT+TGG | 0.270159 | 8_2:+5762408 | Msa1229810:three_prime_UTR |
| CAGACTGGTCTCCCATCTTC+TGG | 0.317809 | 8_2:-5762274 | None:intergenic |
| AATTTAGGCGAATTGAGTTC+TGG | 0.320339 | 8_2:+5762478 | Msa1229810:three_prime_UTR |
| ACATAACTGAAAAGAGAAAA+TGG | 0.338996 | 8_2:+5758808 | None:intergenic |
| TGTAGCGTGTGCGTGGAAAT+TGG | 0.376347 | 8_2:+5758831 | Msa1229810:five_prime_UTR |
| CATAACATAGTCAACAAGTT+TGG | 0.382241 | 8_2:+5759044 | Msa1229810:five_prime_UTR |
| CTTGATTCTTTCATTGGCCC+TGG | 0.383148 | 8_2:-5762508 | None:intergenic |
| TTCTTATAAAACAGAATGAT+AGG | 0.392550 | 8_2:+5762328 | Msa1229810:three_prime_UTR |
| TGAAAATCAACGCTATGCTT+TGG | 0.402636 | 8_2:-5758937 | None:intergenic |
| GATATCAACAAGATTATTCC+TGG | 0.423948 | 8_2:+5760364 | Msa1229810:CDS |
| CAGAAGATGGGAGACCAGTC+TGG | 0.428838 | 8_2:+5762275 | Msa1229810:CDS |
| ATGCATAGCATAGCCTTTGA+TGG | 0.431609 | 8_2:-5762567 | None:intergenic |
| AACAAAACAAAACATTATCA+TGG | 0.438334 | 8_2:+5759083 | Msa1229810:exon |
| TCCAATGCCAGGGACACCTT+CGG | 0.439714 | 8_2:-5762186 | None:intergenic |
| ACCGAAGGTGTCCCTGGCAT+TGG | 0.448225 | 8_2:+5762185 | Msa1229810:CDS |
| AGTTGTGTGGTTCCAGAAGA+TGG | 0.456737 | 8_2:+5762262 | Msa1229810:CDS |
| ATTTAGGCGAATTGAGTTCT+GGG | 0.466964 | 8_2:+5762479 | Msa1229810:three_prime_UTR |
| AGAGCCACCGAAGGTGTCCC+TGG | 0.468274 | 8_2:+5762179 | Msa1229810:CDS |
| TTGAGTTCTGGGGACTCACC+AGG | 0.477039 | 8_2:+5762490 | Msa1229810:three_prime_UTR |
| TCAGAAACTTATCATCACTT+TGG | 0.481962 | 8_2:+5762124 | Msa1229810:CDS |
| TTTGTTGCCATTGCAACACT+TGG | 0.485125 | 8_2:-5762155 | None:intergenic |
| ACTCTTGACTTTACCATCAA+AGG | 0.488999 | 8_2:+5762554 | Msa1229810:three_prime_UTR |
| CAAATCTTCGATAAATTACA+AGG | 0.489770 | 8_2:+5759108 | Msa1229810:CDS |
| CTCAAGTACTCTGTGTCGAC+TGG | 0.491796 | 8_2:-5760184 | None:intergenic |
| AGGGGTGCATAAATTGCATT+GGG | 0.501336 | 8_2:-5762227 | None:intergenic |
| AAGGGGTGCATAAATTGCAT+TGG | 0.507133 | 8_2:-5762228 | None:intergenic |
| GAAGTTTAAGAGTGGAGTGA+AGG | 0.517037 | 8_2:-5759013 | None:intergenic |
| TGGCAATACTATGTACAATC+AGG | 0.524648 | 8_2:-5762356 | None:intergenic |
| CAGGGCCAATGAAAGAATCA+AGG | 0.526519 | 8_2:+5762509 | Msa1229810:three_prime_UTR |
| TTTGATGGAGGATCGAAATG+AGG | 0.530263 | 8_2:-5760388 | None:intergenic |
| ACACAACTGCAAGGGTAACA+AGG | 0.552118 | 8_2:-5762247 | None:intergenic |
| TTGTCTTTGAAGTTTAAGAG+TGG | 0.554071 | 8_2:-5759021 | None:intergenic |
| ACAAAACAAAACATTATCAT+GGG | 0.565013 | 8_2:+5759084 | Msa1229810:exon |
| TGTCCCTGGCATTGGAAAAG+TGG | 0.577787 | 8_2:+5762193 | Msa1229810:CDS |
| TTGTTACCCTTGCAGTTGTG+TGG | 0.580042 | 8_2:+5762249 | Msa1229810:CDS |
| CATTTAATGCAGGTGAGGAG+TGG | 0.581643 | 8_2:+5760107 | Msa1229810:intron |
| AATGCCAGGGACACCTTCGG+TGG | 0.584890 | 8_2:-5762183 | None:intergenic |
| TCTGGAACCACACAACTGCA+AGG | 0.586781 | 8_2:-5762256 | None:intergenic |
| GGAGGATCGAAATGAGGACC+AGG | 0.588209 | 8_2:-5760382 | None:intergenic |
| CACAACTGCAAGGGTAACAA+GGG | 0.588713 | 8_2:-5762246 | None:intergenic |
| GAATGTGATATGAACTTGGA+TGG | 0.590741 | 8_2:+5762032 | Msa1229810:CDS |
| AACTGTCAGACAAATCATGC+AGG | 0.595607 | 8_2:+5760414 | Msa1229810:CDS |
| AATGTGATATGAACTTGGAT+GGG | 0.624339 | 8_2:+5762033 | Msa1229810:CDS |
| GTTGTGTGGTTCCAGAAGAT+GGG | 0.625857 | 8_2:+5762263 | Msa1229810:CDS |
| CTGGAACCACACAACTGCAA+GGG | 0.636117 | 8_2:-5762255 | None:intergenic |
| GCAGGAATGTGATATGAACT+TGG | 0.636985 | 8_2:+5762028 | Msa1229810:intron |
| TTTAGGCGAATTGAGTTCTG+GGG | 0.643553 | 8_2:+5762480 | Msa1229810:three_prime_UTR |
| ATGTGATATGAACTTGGATG+GGG | 0.646533 | 8_2:+5762034 | Msa1229810:CDS |
| TGTAGCACCAAGTGTTGCAA+TGG | 0.657378 | 8_2:+5762148 | Msa1229810:CDS |
| GTACTACTCAGATTCCAGAC+TGG | 0.660523 | 8_2:-5762289 | None:intergenic |
| AAAATGGTGTAGCGTGTGCG+TGG | 0.664549 | 8_2:+5758824 | Msa1229810:five_prime_UTR |
| TGAGTTCTGGGGACTCACCA+GGG | 0.669924 | 8_2:+5762491 | Msa1229810:three_prime_UTR |
| ACAACTGCAAGGGTAACAAG+GGG | 0.709809 | 8_2:-5762245 | None:intergenic |
| CAATTCTAACATGAAAACAG+TGG | 0.712226 | 8_2:-5762376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTATCTTTTATTTTT+TGG | + | chr8_2:5759180-5759199 | Msa1229810:intron | 10.0% |
| !!! | AAAATTTACTTTTACAAATT+TGG | + | chr8_2:5761332-5761351 | Msa1229810:intron | 10.0% |
| !! | GAAATTTAGATATATAATAT+AGG | + | chr8_2:5761908-5761927 | Msa1229810:intron | 10.0% |
| !!! | AATTTTATTTATCAGAAAAA+AGG | - | chr8_2:5762462-5762481 | None:intergenic | 10.0% |
| !!! | TTTTCTGATAAATAAAATTT+AGG | + | chr8_2:5762463-5762482 | Msa1229810:three_prime_UTR | 10.0% |
| !!! | TGTTTTGTTTGATAATAATA+AGG | - | chr8_2:5759072-5759091 | None:intergenic | 15.0% |
| !! | GAATAATGAATAAATTTGAA+TGG | + | chr8_2:5760307-5760326 | Msa1229810:intron | 15.0% |
| !! | TAAATAAACAAGTATATAGT+TGG | - | chr8_2:5760463-5760482 | None:intergenic | 15.0% |
| !! | ACAATTAAATAGATAATACA+TGG | - | chr8_2:5760658-5760677 | None:intergenic | 15.0% |
| !!! | TTTTTAATCTTTAAGAAGTT+CGG | + | chr8_2:5761058-5761077 | Msa1229810:intron | 15.0% |
| !! | AACAAAACAAAACATTATCA+TGG | + | chr8_2:5759083-5759102 | Msa1229810:exon | 20.0% |
| !! | ACAAAACAAAACATTATCAT+GGG | + | chr8_2:5759084-5759103 | Msa1229810:exon | 20.0% |
| !! | TAAAGAAAAATCAGCAAAAA+AGG | - | chr8_2:5759168-5759187 | None:intergenic | 20.0% |
| !! | TGGAATTAAGGAAATTTAAT+TGG | + | chr8_2:5759374-5759393 | Msa1229810:intron | 20.0% |
| !!! | TTGATTTATTTGTTATCTTC+TGG | + | chr8_2:5759976-5759995 | Msa1229810:intron | 20.0% |
| !!! | AGTTTTATAATTCTCTACAA+GGG | + | chr8_2:5760837-5760856 | Msa1229810:intron | 20.0% |
| !!! | TTTTATTCCAACAATTTTCA+TGG | - | chr8_2:5761314-5761333 | None:intergenic | 20.0% |
| !! | TTGTACTAAATAGAATATCA+TGG | - | chr8_2:5761604-5761623 | None:intergenic | 20.0% |
| !!! | TCATTCTGTTTTATAAGAAA+TGG | - | chr8_2:5762327-5762346 | None:intergenic | 20.0% |
| !! | TTCTTATAAAACAGAATGAT+AGG | + | chr8_2:5762328-5762347 | Msa1229810:three_prime_UTR | 20.0% |
| ! | CAAATCTTCGATAAATTACA+AGG | + | chr8_2:5759108-5759127 | Msa1229810:CDS | 25.0% |
| ! | AAAAAAGGTAATTCCAAAAC+AGG | - | chr8_2:5759153-5759172 | None:intergenic | 25.0% |
| ! | GTAAGTAACACAGTTTATTA+TGG | + | chr8_2:5759354-5759373 | Msa1229810:intron | 25.0% |
| ! | CACAGTTTATTATGGAATTA+AGG | + | chr8_2:5759362-5759381 | Msa1229810:intron | 25.0% |
| ! | GAAATTTAATTGGAGTCTTA+TGG | + | chr8_2:5759384-5759403 | Msa1229810:intron | 25.0% |
| ! | CTTTCTATTAATCAAGCTTA+AGG | - | chr8_2:5759618-5759637 | None:intergenic | 25.0% |
| ! | GACATGATTTATCATAGAAA+TGG | - | chr8_2:5760025-5760044 | None:intergenic | 25.0% |
| ! | AGTGGAGAAAAAAACAAATT+AGG | + | chr8_2:5760125-5760144 | Msa1229810:CDS | 25.0% |
| !! | AATTGTTTATACGAGAGTTT+TGG | + | chr8_2:5760672-5760691 | Msa1229810:intron | 25.0% |
| !!! | CAGTTTTATAATTCTCTACA+AGG | + | chr8_2:5760836-5760855 | Msa1229810:intron | 25.0% |
| !! | GTTTTATAATTCTCTACAAG+GGG | + | chr8_2:5760838-5760857 | Msa1229810:intron | 25.0% |
| !!! | TATAGTTTTTGCTTTGGAAT+TGG | + | chr8_2:5761027-5761046 | Msa1229810:intron | 25.0% |
| ! | TCAGTAAACATAATTCACTT+AGG | + | chr8_2:5761182-5761201 | Msa1229810:intron | 25.0% |
| ! | CAGTAAACATAATTCACTTA+GGG | + | chr8_2:5761183-5761202 | Msa1229810:intron | 25.0% |
| !! | CTGATAATACTGAGTTTTTA+AGG | - | chr8_2:5761237-5761256 | None:intergenic | 25.0% |
| ! | TCAGTATTATCAGATTCATA+AGG | + | chr8_2:5761244-5761263 | Msa1229810:intron | 25.0% |
| ! | TTCAATACCATGAAAATTGT+TGG | + | chr8_2:5761304-5761323 | Msa1229810:intron | 25.0% |
| ! | TTGTTAAATAACAGGTACAA+TGG | + | chr8_2:5761539-5761558 | Msa1229810:intron | 25.0% |
| !!! | TGTTTTAACATAGTCAAACA+TGG | - | chr8_2:5761874-5761893 | None:intergenic | 25.0% |
| !! | AAATACAGCGATTCTTATTT+AGG | - | chr8_2:5762409-5762428 | None:intergenic | 25.0% |
| ! | TAAATAAGAATCGCTGTATT+TGG | + | chr8_2:5762408-5762427 | Msa1229810:three_prime_UTR | 25.0% |
| !! | TTGTCTTTGAAGTTTAAGAG+TGG | - | chr8_2:5759024-5759043 | None:intergenic | 30.0% |
| CATAACATAGTCAACAAGTT+TGG | + | chr8_2:5759044-5759063 | Msa1229810:five_prime_UTR | 30.0% | |
| ! | TCTTTCTTTCTTTCCTGTTT+TGG | + | chr8_2:5759137-5759156 | Msa1229810:intron | 30.0% |
| ! | TTACAACAGCTTGATTTTAG+AGG | + | chr8_2:5759308-5759327 | Msa1229810:intron | 30.0% |
| ! | TTAATTGGAGTCTTATGGTA+TGG | + | chr8_2:5759389-5759408 | Msa1229810:intron | 30.0% |
| ! | TCATTGATTGAATCTGAATG+AGG | + | chr8_2:5759433-5759452 | Msa1229810:intron | 30.0% |
| !! | TTGAGTTGATCAATCATCTT+AGG | - | chr8_2:5759483-5759502 | None:intergenic | 30.0% |
| ATCAACTCAAGTATGATTTC+TGG | + | chr8_2:5759493-5759512 | Msa1229810:intron | 30.0% | |
| TCGTTGCTTCATAGATAAAA+AGG | + | chr8_2:5759784-5759803 | Msa1229810:intron | 30.0% | |
| GAAAAGTTGCATAAATCCAT+AGG | + | chr8_2:5759944-5759963 | Msa1229810:intron | 30.0% | |
| !! | ATCGAGTTTTTCAGAATGTA+AGG | + | chr8_2:5760158-5760177 | Msa1229810:CDS | 30.0% |
| GATATCAACAAGATTATTCC+TGG | + | chr8_2:5760364-5760383 | Msa1229810:CDS | 30.0% | |
| ! | AACAAGTATATAGTTGGTCT+CGG | - | chr8_2:5760457-5760476 | None:intergenic | 30.0% |
| AATGCATGTAGTGCATTATA+TGG | - | chr8_2:5760553-5760572 | None:intergenic | 30.0% | |
| TAATGGAATTGATGAACAAG+TGG | - | chr8_2:5760598-5760617 | None:intergenic | 30.0% | |
| ACTCTTCACTGTGATAATAA+TGG | - | chr8_2:5760615-5760634 | None:intergenic | 30.0% | |
| ATACTCAGTAAAAGTGACAA+TGG | + | chr8_2:5760745-5760764 | Msa1229810:intron | 30.0% | |
| TACTCAGTAAAAGTGACAAT+GGG | + | chr8_2:5760746-5760765 | Msa1229810:intron | 30.0% | |
| TGGAATGAAAATTGTTGAGA+AGG | + | chr8_2:5760783-5760802 | Msa1229810:intron | 30.0% | |
| !!! | TAGGGTTTTTAAGTCAATGA+TGG | + | chr8_2:5760897-5760916 | Msa1229810:intron | 30.0% |
| GGTATAACATAGAACTACAA+CGG | + | chr8_2:5760918-5760937 | Msa1229810:intron | 30.0% | |
| ! | AGTGCTTATAGTTTTTGCTT+TGG | + | chr8_2:5761021-5761040 | Msa1229810:intron | 30.0% |
| TTTGACAGTATTCTTGAGAA+AGG | + | chr8_2:5761121-5761140 | Msa1229810:intron | 30.0% | |
| AAAAATTGCATAGTACATGC+TGG | + | chr8_2:5761379-5761398 | Msa1229810:intron | 30.0% | |
| AAAATTGCATAGTACATGCT+GGG | + | chr8_2:5761380-5761399 | Msa1229810:intron | 30.0% | |
| ACGCAATGTTGTTAAATAAC+AGG | + | chr8_2:5761531-5761550 | Msa1229810:intron | 30.0% | |
| !! | AGTACAAAGTGTTGTCAAAT+AGG | + | chr8_2:5761617-5761636 | Msa1229810:intron | 30.0% |
| !! | AAAGAAGTGTTGTCAAATAG+CGG | + | chr8_2:5761708-5761727 | Msa1229810:intron | 30.0% |
| ! | CATGAAAATTTGTTCGTAGT+TGG | - | chr8_2:5761956-5761975 | None:intergenic | 30.0% |
| TTCATGCATGTTATAGTTCT+TGG | + | chr8_2:5761970-5761989 | Msa1229810:intron | 30.0% | |
| AATGTGATATGAACTTGGAT+GGG | + | chr8_2:5762033-5762052 | Msa1229810:CDS | 30.0% | |
| TCAGAAACTTATCATCACTT+TGG | + | chr8_2:5762124-5762143 | Msa1229810:CDS | 30.0% | |
| CAATTCTAACATGAAAACAG+TGG | - | chr8_2:5762379-5762398 | None:intergenic | 30.0% | |
| TGAAAATCAACGCTATGCTT+TGG | - | chr8_2:5758940-5758959 | None:intergenic | 35.0% | |
| CATGTACATCATTTGTAGGT+GGG | - | chr8_2:5759208-5759227 | None:intergenic | 35.0% | |
| CATCCATGTACATCATTTGT+AGG | - | chr8_2:5759212-5759231 | None:intergenic | 35.0% | |
| !! | CTGTGTTACTTACACAATCA+AGG | - | chr8_2:5759347-5759366 | None:intergenic | 35.0% |
| !! | GAGTTTGCTTTTGTCAGATA+TGG | + | chr8_2:5759520-5759539 | Msa1229810:intron | 35.0% |
| AAACACACGATACTTGATCA+TGG | - | chr8_2:5759859-5759878 | None:intergenic | 35.0% | |
| ! | TATGCAACTTTTCAGCTCAA+AGG | - | chr8_2:5759937-5759956 | None:intergenic | 35.0% |
| ATTCATGTACTCGAGTAATC+TGG | + | chr8_2:5760053-5760072 | Msa1229810:intron | 35.0% | |
| TATGCCATGACATTTAATGC+AGG | + | chr8_2:5760097-5760116 | Msa1229810:intron | 35.0% | |
| ! | TGTCTGACAGTTTCTTTTGA+TGG | - | chr8_2:5760406-5760425 | None:intergenic | 35.0% |
| ! | CCGGCATATAATCATTTTCA+CGG | - | chr8_2:5760505-5760524 | None:intergenic | 35.0% |
| CCGTGAAAATGATTATATGC+CGG | + | chr8_2:5760502-5760521 | Msa1229810:intron | 35.0% | |
| CGTGAAAATGATTATATGCC+GGG | + | chr8_2:5760503-5760522 | Msa1229810:intron | 35.0% | |
| TATTATGCTACAAAGCAACC+CGG | - | chr8_2:5760524-5760543 | None:intergenic | 35.0% | |
| ! | TTCTCCGTCTTTTCAATGAT+AGG | + | chr8_2:5760572-5760591 | Msa1229810:intron | 35.0% |
| !!! | ATACGAGAGTTTTGGTTCAT+TGG | + | chr8_2:5760680-5760699 | Msa1229810:intron | 35.0% |
| AATGGGAGATGTTCAAAATG+TGG | + | chr8_2:5760763-5760782 | Msa1229810:intron | 35.0% | |
| !!! | CTTCAACGTTTTGGTTTTCA+TGG | + | chr8_2:5760807-5760826 | Msa1229810:intron | 35.0% |
| TTATAATTCTCTACAAGGGG+TGG | + | chr8_2:5760841-5760860 | Msa1229810:intron | 35.0% | |
| TATAATTCTCTACAAGGGGT+GGG | + | chr8_2:5760842-5760861 | Msa1229810:intron | 35.0% | |
| GGATTTAAACAGTGCAGTAA+GGG | + | chr8_2:5760964-5760983 | Msa1229810:intron | 35.0% | |
| GAGTGATTCAAAACTGCTAT+CGG | + | chr8_2:5761276-5761295 | Msa1229810:intron | 35.0% | |
| !! | ACAAAGTGTTGTCAAATAGG+AGG | + | chr8_2:5761620-5761639 | Msa1229810:intron | 35.0% |
| TGTCAAATAGGAGGCTATAA+CGG | + | chr8_2:5761629-5761648 | Msa1229810:intron | 35.0% | |
| GCTATTTGACAACACTTCTT+TGG | - | chr8_2:5761709-5761728 | None:intergenic | 35.0% | |
| GAGATCCAGAAATGATAACA+CGG | + | chr8_2:5761780-5761799 | Msa1229810:intron | 35.0% | |
| ATCATAGACCATGAGTTGTT+GGG | + | chr8_2:5761820-5761839 | Msa1229810:intron | 35.0% | |
| AAAATGTTCCCAACAACTCA+TGG | - | chr8_2:5761831-5761850 | None:intergenic | 35.0% | |
| GTCAAACATGGAAAGAAAGA+TGG | - | chr8_2:5761862-5761881 | None:intergenic | 35.0% | |
| GAATGTGATATGAACTTGGA+TGG | + | chr8_2:5762032-5762051 | Msa1229810:CDS | 35.0% | |
| ATGTGATATGAACTTGGATG+GGG | + | chr8_2:5762034-5762053 | Msa1229810:CDS | 35.0% | |
| !!! | ATGTATCAGCTGTCATTTTC+TGG | - | chr8_2:5762091-5762110 | None:intergenic | 35.0% |
| TGGCAATACTATGTACAATC+AGG | - | chr8_2:5762359-5762378 | None:intergenic | 35.0% | |
| AATTTAGGCGAATTGAGTTC+TGG | + | chr8_2:5762478-5762497 | Msa1229810:three_prime_UTR | 35.0% | |
| ATTTAGGCGAATTGAGTTCT+GGG | + | chr8_2:5762479-5762498 | Msa1229810:three_prime_UTR | 35.0% | |
| ACTCTTGACTTTACCATCAA+AGG | + | chr8_2:5762554-5762573 | Msa1229810:three_prime_UTR | 35.0% | |
| GAAGTTTAAGAGTGGAGTGA+AGG | - | chr8_2:5759016-5759035 | None:intergenic | 40.0% | |
| CCATGTACATCATTTGTAGG+TGG | - | chr8_2:5759209-5759228 | None:intergenic | 40.0% | |
| CCACCTACAAATGATGTACA+TGG | + | chr8_2:5759206-5759225 | Msa1229810:intron | 40.0% | |
| AACACACACACATAGACACA+GGG | - | chr8_2:5759284-5759303 | None:intergenic | 40.0% | |
| AAACACACACACATAGACAC+AGG | - | chr8_2:5759285-5759304 | None:intergenic | 40.0% | |
| !! | CTCAAGTATGATTTCTGGCT+TGG | + | chr8_2:5759498-5759517 | Msa1229810:intron | 40.0% |
| TGGCTCACTTTACTGAATAG+CGG | + | chr8_2:5759540-5759559 | Msa1229810:intron | 40.0% | |
| !!! | CTCTATAGCACTGACACTTT+TGG | + | chr8_2:5759638-5759657 | Msa1229810:intron | 40.0% |
| !!! | ATAGCACTGACACTTTTGGT+AGG | + | chr8_2:5759642-5759661 | Msa1229810:intron | 40.0% |
| ACACGATACTTGATCATGGA+GGG | - | chr8_2:5759855-5759874 | None:intergenic | 40.0% | |
| AGGCTGTTAGAACAGTAACT+TGG | - | chr8_2:5759917-5759936 | None:intergenic | 40.0% | |
| AGTTGCATAAATCCATAGGC+AGG | + | chr8_2:5759948-5759967 | Msa1229810:intron | 40.0% | |
| GTTGCATAAATCCATAGGCA+GGG | + | chr8_2:5759949-5759968 | Msa1229810:intron | 40.0% | |
| AAATCAATCAACCCTGCCTA+TGG | - | chr8_2:5759963-5759982 | None:intergenic | 40.0% | |
| CTCACCTGCATTAAATGTCA+TGG | - | chr8_2:5760104-5760123 | None:intergenic | 40.0% | |
| CATGACATTTAATGCAGGTG+AGG | + | chr8_2:5760102-5760121 | Msa1229810:intron | 40.0% | |
| TTTGATGGAGGATCGAAATG+AGG | - | chr8_2:5760391-5760410 | None:intergenic | 40.0% | |
| ! | CTGACAGTTTCTTTTGATGG+AGG | - | chr8_2:5760403-5760422 | None:intergenic | 40.0% |
| AACTGTCAGACAAATCATGC+AGG | + | chr8_2:5760414-5760433 | Msa1229810:CDS | 40.0% | |
| GTGGCCTATCATTGAAAAGA+CGG | - | chr8_2:5760579-5760598 | None:intergenic | 40.0% | |
| ! | TGAGAAGGACTTCAACGTTT+TGG | + | chr8_2:5760798-5760817 | Msa1229810:intron | 40.0% |
| TACTTAAGCAGAATGTCGCT+CGG | - | chr8_2:5760879-5760898 | None:intergenic | 40.0% | |
| AGCGACATTCTGCTTAAGTA+GGG | + | chr8_2:5760879-5760898 | Msa1229810:intron | 40.0% | |
| GGGATTTAAACAGTGCAGTA+AGG | + | chr8_2:5760963-5760982 | Msa1229810:intron | 40.0% | |
| TCAAGTTATCACCATGCACA+TGG | - | chr8_2:5761152-5761171 | None:intergenic | 40.0% | |
| TGCTTATTTGTACCAAGGCA+TGG | - | chr8_2:5761412-5761431 | None:intergenic | 40.0% | |
| ACCTCTGCTTATTTGTACCA+AGG | - | chr8_2:5761417-5761436 | None:intergenic | 40.0% | |
| CATGTCCGTGTTATCATTTC+TGG | - | chr8_2:5761788-5761807 | None:intergenic | 40.0% | |
| GATCATAGACCATGAGTTGT+TGG | + | chr8_2:5761819-5761838 | Msa1229810:intron | 40.0% | |
| GCAGGAATGTGATATGAACT+TGG | + | chr8_2:5762028-5762047 | Msa1229810:intron | 40.0% | |
| TTTGTTGCCATTGCAACACT+TGG | - | chr8_2:5762158-5762177 | None:intergenic | 40.0% | |
| ! | AGGGGTGCATAAATTGCATT+GGG | - | chr8_2:5762230-5762249 | None:intergenic | 40.0% |
| ! | AAGGGGTGCATAAATTGCAT+TGG | - | chr8_2:5762231-5762250 | None:intergenic | 40.0% |
| TTTAGGCGAATTGAGTTCTG+GGG | + | chr8_2:5762480-5762499 | Msa1229810:three_prime_UTR | 40.0% | |
| ATGCATAGCATAGCCTTTGA+TGG | - | chr8_2:5762570-5762589 | None:intergenic | 40.0% | |
| GGCTCACTTTACTGAATAGC+GGG | + | chr8_2:5759541-5759560 | Msa1229810:intron | 45.0% | |
| ! | ACACTTTTGGTAGGTGTGTC+CGG | + | chr8_2:5759651-5759670 | Msa1229810:intron | 45.0% |
| TGTCAGTGATGTGTAGGTGT+GGG | - | chr8_2:5759680-5759699 | None:intergenic | 45.0% | |
| TCAGACTGTCAGTGATGTGT+AGG | - | chr8_2:5759686-5759705 | None:intergenic | 45.0% | |
| TACTGCAGCCTCTATGTAGT+CGG | + | chr8_2:5759807-5759826 | Msa1229810:intron | 45.0% | |
| CACACGATACTTGATCATGG+AGG | - | chr8_2:5759856-5759875 | None:intergenic | 45.0% | |
| CATTTAATGCAGGTGAGGAG+TGG | + | chr8_2:5760107-5760126 | Msa1229810:intron | 45.0% | |
| GAGCGACATTCTGCTTAAGT+AGG | + | chr8_2:5760878-5760897 | Msa1229810:intron | 45.0% | |
| GCTATAGCACTGTCGCATAA+CGG | + | chr8_2:5760942-5760961 | Msa1229810:intron | 45.0% | |
| CTATAGCACTGTCGCATAAC+GGG | + | chr8_2:5760943-5760962 | Msa1229810:intron | 45.0% | |
| CAGTCTCAGAATACCTCGTA+GGG | + | chr8_2:5761081-5761100 | Msa1229810:intron | 45.0% | |
| CTTATTGCTTTCTCCCTACG+AGG | - | chr8_2:5761097-5761116 | None:intergenic | 45.0% | |
| GAAAGGATTCACCATGTGCA+TGG | + | chr8_2:5761138-5761157 | Msa1229810:intron | 45.0% | |
| TTGCATAGTACATGCTGGGT+TGG | + | chr8_2:5761384-5761403 | Msa1229810:intron | 45.0% | |
| TGCATAGTACATGCTGGGTT+GGG | + | chr8_2:5761385-5761404 | Msa1229810:intron | 45.0% | |
| GCCTTGGTACAAATAAGCAG+AGG | + | chr8_2:5761413-5761432 | Msa1229810:intron | 45.0% | |
| TTCCTGCGCATTGTTAAACG+AGG | - | chr8_2:5762015-5762034 | None:intergenic | 45.0% | |
| ! | TGTAGCACCAAGTGTTGCAA+TGG | + | chr8_2:5762148-5762167 | Msa1229810:CDS | 45.0% |
| ACAACTGCAAGGGTAACAAG+GGG | - | chr8_2:5762248-5762267 | None:intergenic | 45.0% | |
| CACAACTGCAAGGGTAACAA+GGG | - | chr8_2:5762249-5762268 | None:intergenic | 45.0% | |
| ACACAACTGCAAGGGTAACA+AGG | - | chr8_2:5762250-5762269 | None:intergenic | 45.0% | |
| TTGTTACCCTTGCAGTTGTG+TGG | + | chr8_2:5762249-5762268 | Msa1229810:CDS | 45.0% | |
| AGTTGTGTGGTTCCAGAAGA+TGG | + | chr8_2:5762262-5762281 | Msa1229810:CDS | 45.0% | |
| GTTGTGTGGTTCCAGAAGAT+GGG | + | chr8_2:5762263-5762282 | Msa1229810:CDS | 45.0% | |
| GTACTACTCAGATTCCAGAC+TGG | - | chr8_2:5762292-5762311 | None:intergenic | 45.0% | |
| CTTGATTCTTTCATTGGCCC+TGG | - | chr8_2:5762511-5762530 | None:intergenic | 45.0% | |
| CAGGGCCAATGAAAGAATCA+AGG | + | chr8_2:5762509-5762528 | Msa1229810:three_prime_UTR | 45.0% | |
| CTGCGCCTTGATTCTTTCAT+TGG | - | chr8_2:5762517-5762536 | None:intergenic | 45.0% | |
| AAAATGGTGTAGCGTGTGCG+TGG | + | chr8_2:5758824-5758843 | Msa1229810:five_prime_UTR | 50.0% | |
| TGTAGCGTGTGCGTGGAAAT+TGG | + | chr8_2:5758831-5758850 | Msa1229810:five_prime_UTR | 50.0% | |
| !! | ACTTTACTGAATAGCGGGCC+AGG | + | chr8_2:5759546-5759565 | Msa1229810:intron | 50.0% |
| CTGTCAGTGATGTGTAGGTG+TGG | - | chr8_2:5759681-5759700 | None:intergenic | 50.0% | |
| CTACGTCTCCGACTACATAG+AGG | - | chr8_2:5759818-5759837 | None:intergenic | 50.0% | |
| CTCTATGTAGTCGGAGACGT+AGG | + | chr8_2:5759816-5759835 | Msa1229810:intron | 50.0% | |
| ! | CTCAAGTACTCTGTGTCGAC+TGG | - | chr8_2:5760187-5760206 | None:intergenic | 50.0% |
| TCTCTACAAGGGGTGGGAAT+AGG | + | chr8_2:5760848-5760867 | Msa1229810:intron | 50.0% | |
| GCAGTCTCAGAATACCTCGT+AGG | + | chr8_2:5761080-5761099 | Msa1229810:intron | 50.0% | |
| GCTATAGCACTGTCGCATAG+CGG | + | chr8_2:5761653-5761672 | Msa1229810:intron | 50.0% | |
| TGCCTCGTTTAACAATGCGC+AGG | + | chr8_2:5762010-5762029 | Msa1229810:intron | 50.0% | |
| GCAACAAAAAGAGCCACCGA+AGG | + | chr8_2:5762170-5762189 | Msa1229810:CDS | 50.0% | |
| ! | TGTCCCTGGCATTGGAAAAG+TGG | + | chr8_2:5762193-5762212 | Msa1229810:CDS | 50.0% |
| !! | GCACCACTTTTCCAATGCCA+GGG | - | chr8_2:5762199-5762218 | None:intergenic | 50.0% |
| !! | TGCACCACTTTTCCAATGCC+AGG | - | chr8_2:5762200-5762219 | None:intergenic | 50.0% |
| CTGGAACCACACAACTGCAA+GGG | - | chr8_2:5762258-5762277 | None:intergenic | 50.0% | |
| ! | TCTGGAACCACACAACTGCA+AGG | - | chr8_2:5762259-5762278 | None:intergenic | 50.0% |
| !! | TTACTGAATAGCGGGCCAGG+TGG | + | chr8_2:5759549-5759568 | Msa1229810:intron | 55.0% |
| GATGTGTAGGTGTGGGACAC+CGG | - | chr8_2:5759673-5759692 | None:intergenic | 55.0% | |
| GTCGGAGACGTAGGCACAAT+TGG | + | chr8_2:5759825-5759844 | Msa1229810:intron | 55.0% | |
| GGAGGATCGAAATGAGGACC+AGG | - | chr8_2:5760385-5760404 | None:intergenic | 55.0% | |
| TCCAATGCCAGGGACACCTT+CGG | - | chr8_2:5762189-5762208 | None:intergenic | 55.0% | |
| !! | CAGACTGGTCTCCCATCTTC+TGG | - | chr8_2:5762277-5762296 | None:intergenic | 55.0% |
| CAGAAGATGGGAGACCAGTC+TGG | + | chr8_2:5762275-5762294 | Msa1229810:CDS | 55.0% | |
| !! | TTGAGTTCTGGGGACTCACC+AGG | + | chr8_2:5762490-5762509 | Msa1229810:three_prime_UTR | 55.0% |
| !! | TGAGTTCTGGGGACTCACCA+GGG | + | chr8_2:5762491-5762510 | Msa1229810:three_prime_UTR | 55.0% |
| AATGCCAGGGACACCTTCGG+TGG | - | chr8_2:5762186-5762205 | None:intergenic | 60.0% | |
| !! | ACCGAAGGTGTCCCTGGCAT+TGG | + | chr8_2:5762185-5762204 | Msa1229810:CDS | 60.0% |
| ! | GCTGGGTTGGGACCATGCCT+TGG | + | chr8_2:5761397-5761416 | Msa1229810:intron | 65.0% |
| !! | AGAGCCACCGAAGGTGTCCC+TGG | + | chr8_2:5762179-5762198 | Msa1229810:CDS | 65.0% |
| AGCGGGCCAGGTGGCACGAG+CGG | + | chr8_2:5759558-5759577 | Msa1229810:intron | 75.0% | |
| CTCTCCCCGCTCGTGCCACC+TGG | - | chr8_2:5759567-5759586 | None:intergenic | 75.0% | |
| ! | GCGGGCCAGGTGGCACGAGC+GGG | + | chr8_2:5759559-5759578 | Msa1229810:intron | 80.0% |
| ! | CGGGCCAGGTGGCACGAGCG+GGG | + | chr8_2:5759560-5759579 | Msa1229810:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 5758823 | 5762601 | 5758823 | ID=Msa1229810;Name=Msa1229810 |
| chr8_2 | mRNA | 5758823 | 5762601 | 5758823 | ID=Msa1229810-mRNA-1;Parent=Msa1229810;Name=Msa1229810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=279|1|1|1|0.33|0.5|4|297|166 |
| chr8_2 | exon | 5758823 | 5759129 | 5758823 | ID=Msa1229810-mRNA-1:exon:1957;Parent=Msa1229810-mRNA-1 |
| chr8_2 | exon | 5760119 | 5760245 | 5760119 | ID=Msa1229810-mRNA-1:exon:1958;Parent=Msa1229810-mRNA-1 |
| chr8_2 | exon | 5760363 | 5760435 | 5760363 | ID=Msa1229810-mRNA-1:exon:1959;Parent=Msa1229810-mRNA-1 |
| chr8_2 | exon | 5762032 | 5762601 | 5762032 | ID=Msa1229810-mRNA-1:exon:1960;Parent=Msa1229810-mRNA-1 |
| chr8_2 | five_prime_UTR | 5758823 | 5759101 | 5758823 | ID=Msa1229810-mRNA-1:five_prime_utr;Parent=Msa1229810-mRNA-1 |
| chr8_2 | CDS | 5759102 | 5759129 | 5759102 | ID=Msa1229810-mRNA-1:cds;Parent=Msa1229810-mRNA-1 |
| chr8_2 | CDS | 5760119 | 5760245 | 5760119 | ID=Msa1229810-mRNA-1:cds;Parent=Msa1229810-mRNA-1 |
| chr8_2 | CDS | 5760363 | 5760435 | 5760363 | ID=Msa1229810-mRNA-1:cds;Parent=Msa1229810-mRNA-1 |
| chr8_2 | CDS | 5762032 | 5762304 | 5762032 | ID=Msa1229810-mRNA-1:cds;Parent=Msa1229810-mRNA-1 |
| chr8_2 | three_prime_UTR | 5762305 | 5762601 | 5762305 | ID=Msa1229810-mRNA-1:three_prime_utr;Parent=Msa1229810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
