Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183240 | sp|D7SSD8|MJE1_VITVI | 53.125 | 256 | 117 | 3 | 27 | 281 | 7 | 260 | 2.34e-90 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183240 | A0A396GD32 | 95.374 | 281 | 13 | 0 | 1 | 281 | 1 | 281 | 0.0 | 527 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0993700 | Msa1183240 | 0.858216 | 9.594131e-63 | -8.615850e-47 |
| Msa1148200 | Msa1183240 | 0.824245 | 8.958273e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183240 | MtrunA17_Chr8g0336391 | 95.374 | 281 | 13 | 0 | 1 | 281 | 1 | 281 | 0.0 | 527 |
| Msa1183240 | MtrunA17_Chr8g0336411 | 68.085 | 282 | 88 | 2 | 1 | 281 | 1 | 281 | 3.96e-138 | 390 |
| Msa1183240 | MtrunA17_Chr8g0336441 | 67.260 | 281 | 89 | 1 | 1 | 281 | 1 | 278 | 6.38e-136 | 385 |
| Msa1183240 | MtrunA17_Chr8g0336401 | 66.197 | 284 | 93 | 2 | 1 | 281 | 1 | 284 | 1.18e-133 | 379 |
| Msa1183240 | MtrunA17_Chr3g0104871 | 67.037 | 270 | 86 | 1 | 12 | 281 | 4 | 270 | 1.01e-127 | 363 |
| Msa1183240 | MtrunA17_Chr8g0336381 | 63.281 | 256 | 93 | 1 | 27 | 281 | 7 | 262 | 4.55e-120 | 344 |
| Msa1183240 | MtrunA17_Chr5g0402871 | 53.077 | 260 | 120 | 2 | 23 | 281 | 1 | 259 | 1.56e-98 | 289 |
| Msa1183240 | MtrunA17_Chr5g0402851 | 55.078 | 256 | 113 | 2 | 27 | 281 | 8 | 262 | 4.72e-98 | 288 |
| Msa1183240 | MtrunA17_Chr5g0402841 | 51.562 | 256 | 121 | 3 | 27 | 281 | 8 | 261 | 9.62e-86 | 257 |
| Msa1183240 | MtrunA17_Chr8g0374141 | 42.023 | 257 | 140 | 5 | 27 | 281 | 53 | 302 | 3.33e-64 | 203 |
| Msa1183240 | MtrunA17_Chr5g0402901 | 41.245 | 257 | 142 | 5 | 27 | 281 | 12 | 261 | 7.68e-62 | 196 |
| Msa1183240 | MtrunA17_Chr5g0402881 | 40.078 | 257 | 145 | 6 | 27 | 281 | 29 | 278 | 1.43e-57 | 186 |
| Msa1183240 | MtrunA17_Chr7g0219561 | 38.189 | 254 | 149 | 4 | 27 | 278 | 124 | 371 | 3.33e-50 | 169 |
| Msa1183240 | MtrunA17_Chr5g0428471 | 36.328 | 256 | 157 | 3 | 27 | 281 | 30 | 280 | 4.34e-49 | 164 |
| Msa1183240 | MtrunA17_Chr3g0128581 | 36.759 | 253 | 153 | 3 | 27 | 278 | 36 | 282 | 1.39e-46 | 157 |
| Msa1183240 | MtrunA17_Chr3g0077351 | 33.588 | 262 | 167 | 3 | 20 | 279 | 87 | 343 | 8.14e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183240 | AT3G50440.1 | 44.531 | 256 | 137 | 3 | 28 | 281 | 22 | 274 | 5.06e-74 | 228 |
| Msa1183240 | AT2G23620.1 | 43.798 | 258 | 138 | 5 | 27 | 281 | 9 | 262 | 8.30e-67 | 209 |
| Msa1183240 | AT2G23610.1 | 45.136 | 257 | 132 | 6 | 29 | 281 | 11 | 262 | 1.45e-65 | 206 |
| Msa1183240 | AT2G23600.1 | 43.411 | 258 | 139 | 5 | 27 | 281 | 9 | 262 | 1.04e-64 | 204 |
| Msa1183240 | AT2G23600.2 | 43.411 | 258 | 139 | 5 | 27 | 281 | 24 | 277 | 1.52e-64 | 204 |
| Msa1183240 | AT2G23580.1 | 42.146 | 261 | 145 | 4 | 24 | 281 | 5 | 262 | 6.28e-62 | 196 |
| Msa1183240 | AT2G23560.1 | 40.996 | 261 | 145 | 5 | 24 | 281 | 5 | 259 | 1.49e-60 | 193 |
| Msa1183240 | AT2G23550.1 | 41.221 | 262 | 146 | 5 | 24 | 281 | 5 | 262 | 2.70e-60 | 192 |
| Msa1183240 | AT2G23550.4 | 41.221 | 262 | 146 | 5 | 24 | 281 | 12 | 269 | 3.35e-60 | 192 |
| Msa1183240 | AT4G37150.1 | 40.078 | 257 | 148 | 4 | 27 | 281 | 3 | 255 | 4.40e-59 | 189 |
| Msa1183240 | AT2G23590.1 | 40.078 | 257 | 140 | 5 | 27 | 281 | 27 | 271 | 2.87e-57 | 185 |
| Msa1183240 | AT5G10300.1 | 39.216 | 255 | 152 | 2 | 27 | 281 | 6 | 257 | 8.14e-55 | 178 |
| Msa1183240 | AT5G58310.1 | 36.434 | 258 | 154 | 3 | 27 | 278 | 5 | 258 | 6.05e-52 | 171 |
| Msa1183240 | AT3G29770.1 | 39.921 | 253 | 146 | 3 | 28 | 279 | 139 | 386 | 2.39e-51 | 173 |
| Msa1183240 | AT1G33990.1 | 36.220 | 254 | 155 | 4 | 28 | 279 | 98 | 346 | 3.85e-51 | 171 |
| Msa1183240 | AT2G23610.2 | 39.844 | 256 | 106 | 6 | 27 | 281 | 9 | 217 | 2.36e-50 | 165 |
| Msa1183240 | AT4G09900.1 | 34.252 | 254 | 160 | 4 | 28 | 279 | 99 | 347 | 2.79e-49 | 167 |
| Msa1183240 | AT4G16690.1 | 37.109 | 256 | 143 | 4 | 27 | 276 | 12 | 255 | 2.86e-49 | 164 |
| Msa1183240 | AT1G26360.1 | 37.549 | 253 | 152 | 3 | 28 | 279 | 190 | 437 | 5.91e-49 | 168 |
| Msa1183240 | AT3G10870.1 | 35.178 | 253 | 161 | 2 | 27 | 278 | 20 | 270 | 1.50e-46 | 157 |
| Msa1183240 | AT1G69240.1 | 36.078 | 255 | 155 | 4 | 28 | 279 | 188 | 437 | 3.20e-46 | 161 |
| Msa1183240 | AT2G23550.2 | 36.782 | 261 | 130 | 5 | 24 | 281 | 5 | 233 | 3.64e-46 | 155 |
| Msa1183240 | AT2G23600.3 | 44.785 | 163 | 86 | 3 | 27 | 186 | 24 | 185 | 1.21e-41 | 142 |
| Msa1183240 | AT2G23550.3 | 44.242 | 165 | 87 | 3 | 24 | 184 | 12 | 175 | 2.02e-39 | 137 |
| Msa1183240 | AT2G23580.2 | 42.771 | 166 | 92 | 2 | 24 | 186 | 5 | 170 | 3.76e-39 | 136 |
| Msa1183240 | AT5G10300.2 | 41.358 | 162 | 95 | 0 | 27 | 188 | 6 | 167 | 5.31e-38 | 133 |
| Msa1183240 | AT4G37140.1 | 51.456 | 103 | 50 | 0 | 27 | 129 | 3 | 105 | 7.92e-36 | 125 |
| Msa1183240 | AT2G23570.1 | 40.884 | 181 | 102 | 3 | 103 | 281 | 1 | 178 | 2.13e-35 | 125 |
| Msa1183240 | AT4G37140.2 | 50.000 | 90 | 45 | 0 | 27 | 116 | 3 | 92 | 6.11e-30 | 109 |
| Msa1183240 | AT3G29770.2 | 52.778 | 72 | 34 | 0 | 28 | 99 | 139 | 210 | 2.07e-19 | 85.9 |
Find 68 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCATTGATGACATTTA+TGG | 0.079683 | 8_1:+18480279 | Msa1183240:CDS |
| CATCTTGGATGCCATGAATT+TGG | 0.134984 | 8_1:-18480801 | None:intergenic |
| TAGAAGGATTAGTTCTTTAA+TGG | 0.232720 | 8_1:+18480718 | Msa1183240:CDS |
| AGTTCAGCATCTTTATAAAT+TGG | 0.246349 | 8_1:-18480994 | None:intergenic |
| GCACAATTAACACAAATTAT+AGG | 0.265798 | 8_1:-18480094 | None:intergenic |
| AGGGTGGAACTAAGCTTCTT+TGG | 0.287632 | 8_1:-18481198 | None:intergenic |
| TGAATCTCTTGTACCTGAAT+TGG | 0.306427 | 8_1:-18480238 | None:intergenic |
| TACCCTTCCATTTCTATCAT+TGG | 0.315130 | 8_1:-18481040 | None:intergenic |
| ACTATTGAATTGGCTGGTTC+AGG | 0.333088 | 8_1:+18480208 | Msa1183240:CDS |
| ATCTTGGATGCCATGAATTT+GGG | 0.341185 | 8_1:-18480800 | None:intergenic |
| TAATGTTACAACTATTGAAT+TGG | 0.359160 | 8_1:+18480198 | Msa1183240:CDS |
| CAAACCTGCAACTGCTAGAT+TGG | 0.368595 | 8_1:+18480772 | Msa1183240:CDS |
| TGAGAAGGTGGAAGTGATAG+AGG | 0.372293 | 8_1:+18481146 | Msa1183240:CDS |
| CTAGCAGTTGCAGGTTTGTT+GGG | 0.377021 | 8_1:-18480767 | None:intergenic |
| TGTACCTCTTGAAGAACAAC+TGG | 0.381557 | 8_1:-18480448 | None:intergenic |
| TTCAGGTATCAATCCAATTC+AGG | 0.386595 | 8_1:+18480225 | Msa1183240:CDS |
| GCAAACTTTGTGCTGATTCA+TGG | 0.390525 | 8_1:+18480115 | Msa1183240:CDS |
| TCTAGCAGTTGCAGGTTTGT+TGG | 0.395041 | 8_1:-18480768 | None:intergenic |
| TGGTGCATGGTGTTGGTATA+AGG | 0.400591 | 8_1:+18480147 | Msa1183240:CDS |
| ATTGGTTGGACCCAAATTCA+TGG | 0.411752 | 8_1:+18480790 | Msa1183240:CDS |
| ACAGTTACCAATGATAGAAA+TGG | 0.420687 | 8_1:+18481033 | Msa1183240:CDS |
| ATCACTTCCACCTTCTCAAA+TGG | 0.422893 | 8_1:-18481141 | None:intergenic |
| CCAACCAATCTAGCAGTTGC+AGG | 0.423936 | 8_1:-18480776 | None:intergenic |
| TTTACAAATGTGGATGATTG+AGG | 0.432754 | 8_1:+18481110 | Msa1183240:CDS |
| AAATTTATAAGATGATGAAA+AGG | 0.434435 | 8_1:+18480029 | None:intergenic |
| AAGGAAAAGGTGATTCTTGT+TGG | 0.440376 | 8_1:+18480316 | Msa1183240:CDS |
| CTTGTTGGTCATAGTCTTGG+TGG | 0.441219 | 8_1:+18480331 | Msa1183240:CDS |
| ATTCTTGTTGGTCATAGTCT+TGG | 0.443284 | 8_1:+18480328 | Msa1183240:CDS |
| CCATCATGTAGCAAGCTAGA+AGG | 0.455347 | 8_1:+18480702 | Msa1183240:intron |
| GTTACAACTATTGAATTGGC+TGG | 0.461529 | 8_1:+18480202 | Msa1183240:CDS |
| ATCTCTTCCTCCAAAGGAAA+AGG | 0.464266 | 8_1:+18480303 | Msa1183240:CDS |
| CCTGCAACTGCTAGATTGGT+TGG | 0.480634 | 8_1:+18480776 | Msa1183240:CDS |
| TTGTTGGTCATAGTCTTGGT+GGG | 0.483396 | 8_1:+18480332 | Msa1183240:CDS |
| GCATCTTTATAAATTGGTAC+AGG | 0.494562 | 8_1:-18480988 | None:intergenic |
| AATTTATAAGATGATGAAAA+GGG | 0.497143 | 8_1:+18480030 | None:intergenic |
| AAATTGGTACAGGTCTCACT+AGG | 0.515680 | 8_1:-18480978 | None:intergenic |
| GTCTCACTAGGGACAATGCA+AGG | 0.519627 | 8_1:-18480966 | None:intergenic |
| TTACAAATGTGGATGATTGA+GGG | 0.527104 | 8_1:+18481111 | Msa1183240:CDS |
| TGGTGATAATTGATACATCT+TGG | 0.534510 | 8_1:-18480816 | None:intergenic |
| CAAAAGTGACAATTTGATAA+CGG | 0.537259 | 8_1:+18481083 | Msa1183240:CDS |
| GATTCCATAAATGTCATCAA+TGG | 0.541738 | 8_1:-18480283 | None:intergenic |
| TATGGAATCTCTTCCTCCAA+AGG | 0.542372 | 8_1:+18480297 | Msa1183240:CDS |
| CTGATTCATGGTGGAAGCCA+TGG | 0.542667 | 8_1:+18480127 | Msa1183240:CDS |
| GGTGTCCACATCTGTTGCTA+TGG | 0.544684 | 8_1:+18480354 | Msa1183240:CDS |
| GCAACTATGCTGAAATCTGC+TGG | 0.549763 | 8_1:+18480172 | Msa1183240:CDS |
| TTGTGCAATCTTTAGAAGGG+TGG | 0.551296 | 8_1:-18481214 | None:intergenic |
| GAAGCCATGGTGCATGGTGT+TGG | 0.558171 | 8_1:+18480140 | Msa1183240:CDS |
| ATACCCAGTTGTTCTTCAAG+AGG | 0.566134 | 8_1:+18480444 | Msa1183240:CDS |
| AAGTGGTCCATTTGAGAAGG+TGG | 0.568965 | 8_1:+18481134 | Msa1183240:CDS |
| TGTTGGTCATAGTCTTGGTG+GGG | 0.581014 | 8_1:+18480333 | Msa1183240:CDS |
| ATTAACATATATACCTCAGA+TGG | 0.582287 | 8_1:-18480836 | None:intergenic |
| GAAGAACAACTGGGTATGAG+AGG | 0.584782 | 8_1:-18480438 | None:intergenic |
| TTACCAATGATAGAAATGGA+AGG | 0.600752 | 8_1:+18481037 | Msa1183240:CDS |
| GGGAAGTGGTCCATTTGAGA+AGG | 0.602052 | 8_1:+18481131 | Msa1183240:CDS |
| TAACGGAGGATTTACAAATG+TGG | 0.603019 | 8_1:+18481100 | Msa1183240:CDS |
| ATGTGGATGATTGAGGGAAG+TGG | 0.609911 | 8_1:+18481117 | Msa1183240:CDS |
| TACCAATGATAGAAATGGAA+GGG | 0.611098 | 8_1:+18481038 | Msa1183240:CDS |
| GATAGAGGATTCTGATCACA+TGG | 0.632772 | 8_1:+18481161 | Msa1183240:CDS |
| AATTGGTACAGGTCTCACTA+GGG | 0.640202 | 8_1:-18480977 | None:intergenic |
| ATGGTGGAAGCCATGGTGCA+TGG | 0.643508 | 8_1:+18480134 | Msa1183240:CDS |
| TCTCACTAGGGACAATGCAA+GGG | 0.646794 | 8_1:-18480965 | None:intergenic |
| AAGTGACAATTTGATAACGG+AGG | 0.648075 | 8_1:+18481086 | Msa1183240:CDS |
| TATACCAACACCATGCACCA+TGG | 0.667607 | 8_1:-18480144 | None:intergenic |
| AACTTTGTGCTGATTCATGG+TGG | 0.673588 | 8_1:+18480118 | Msa1183240:CDS |
| GTATCAATTATCACCATCTG+AGG | 0.677571 | 8_1:+18480823 | Msa1183240:CDS |
| ATAACAAAAGAATGTGCACA+AGG | 0.695826 | 8_1:-18480060 | None:intergenic |
| GTACCTCTTGAAGAACAACT+GGG | 0.719501 | 8_1:-18480447 | None:intergenic |
| TGCATGGTGTTGGTATAAGG+TGG | 0.723340 | 8_1:+18480150 | Msa1183240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAATTTTTAATTTAATTG+AGG | - | chr8_1:18480554-18480573 | None:intergenic | 10.0% |
| !!! | AAGTCAAAATTAAATTTTTA+TGG | - | chr8_1:18480866-18480885 | None:intergenic | 10.0% |
| !!! | ATAAAAATTTAATTTTGACT+TGG | + | chr8_1:18480865-18480884 | Msa1183240:intron | 10.0% |
| !!! | GTTAATTTTTAATTTAATTG+AGG | - | chr8_1:18480554-18480573 | None:intergenic | 10.0% |
| !!! | AAGTCAAAATTAAATTTTTA+TGG | - | chr8_1:18480866-18480885 | None:intergenic | 10.0% |
| !!! | ATAAAAATTTAATTTTGACT+TGG | + | chr8_1:18480865-18480884 | Msa1183240:intron | 10.0% |
| !!! | ATTTTCAAGAATAATTTTGT+GGG | - | chr8_1:18480513-18480532 | None:intergenic | 15.0% |
| !!! | TTAATCAAAGTTTAAAATTG+TGG | - | chr8_1:18480607-18480626 | None:intergenic | 15.0% |
| !! | TTGCTTATGATAAAAAATTT+AGG | - | chr8_1:18481066-18481085 | None:intergenic | 15.0% |
| !!! | ATTTTCAAGAATAATTTTGT+GGG | - | chr8_1:18480513-18480532 | None:intergenic | 15.0% |
| !!! | TTAATCAAAGTTTAAAATTG+TGG | - | chr8_1:18480607-18480626 | None:intergenic | 15.0% |
| !! | TTGCTTATGATAAAAAATTT+AGG | - | chr8_1:18481066-18481085 | None:intergenic | 15.0% |
| !! | TAATGTTACAACTATTGAAT+TGG | + | chr8_1:18480198-18480217 | Msa1183240:CDS | 20.0% |
| !!! | CATTTTCAAGAATAATTTTG+TGG | - | chr8_1:18480514-18480533 | None:intergenic | 20.0% |
| !! | TAATGTTACAACTATTGAAT+TGG | + | chr8_1:18480198-18480217 | Msa1183240:CDS | 20.0% |
| !!! | CATTTTCAAGAATAATTTTG+TGG | - | chr8_1:18480514-18480533 | None:intergenic | 20.0% |
| ! | GCACAATTAACACAAATTAT+AGG | - | chr8_1:18480097-18480116 | None:intergenic | 25.0% |
| !!! | TAGAAGGATTAGTTCTTTAA+TGG | + | chr8_1:18480718-18480737 | Msa1183240:CDS | 25.0% |
| ! | ATTAACATATATACCTCAGA+TGG | - | chr8_1:18480839-18480858 | None:intergenic | 25.0% |
| ! | AAATCCTACACATTTCAATT+TGG | - | chr8_1:18480943-18480962 | None:intergenic | 25.0% |
| ! | AGTTCAGCATCTTTATAAAT+TGG | - | chr8_1:18480997-18481016 | None:intergenic | 25.0% |
| ! | CAAAAGTGACAATTTGATAA+CGG | + | chr8_1:18481083-18481102 | Msa1183240:CDS | 25.0% |
| ! | GCACAATTAACACAAATTAT+AGG | - | chr8_1:18480097-18480116 | None:intergenic | 25.0% |
| !!! | TAGAAGGATTAGTTCTTTAA+TGG | + | chr8_1:18480718-18480737 | Msa1183240:CDS | 25.0% |
| ! | ATTAACATATATACCTCAGA+TGG | - | chr8_1:18480839-18480858 | None:intergenic | 25.0% |
| ! | AAATCCTACACATTTCAATT+TGG | - | chr8_1:18480943-18480962 | None:intergenic | 25.0% |
| ! | AGTTCAGCATCTTTATAAAT+TGG | - | chr8_1:18480997-18481016 | None:intergenic | 25.0% |
| ! | CAAAAGTGACAATTTGATAA+CGG | + | chr8_1:18481083-18481102 | Msa1183240:CDS | 25.0% |
| ATAACAAAAGAATGTGCACA+AGG | - | chr8_1:18480063-18480082 | None:intergenic | 30.0% | |
| ! | TGAACCATTGATGACATTTA+TGG | + | chr8_1:18480279-18480298 | Msa1183240:CDS | 30.0% |
| GATTCCATAAATGTCATCAA+TGG | - | chr8_1:18480286-18480305 | None:intergenic | 30.0% | |
| ! | ACAGAGTTTTTCTTCTTTGA+TGG | + | chr8_1:18480743-18480762 | Msa1183240:CDS | 30.0% |
| TGGTGATAATTGATACATCT+TGG | - | chr8_1:18480819-18480838 | None:intergenic | 30.0% | |
| AACTCCAAATTGAAATGTGT+AGG | + | chr8_1:18480936-18480955 | Msa1183240:intron | 30.0% | |
| GCATCTTTATAAATTGGTAC+AGG | - | chr8_1:18480991-18481010 | None:intergenic | 30.0% | |
| ACAGTTACCAATGATAGAAA+TGG | + | chr8_1:18481033-18481052 | Msa1183240:CDS | 30.0% | |
| TTACCAATGATAGAAATGGA+AGG | + | chr8_1:18481037-18481056 | Msa1183240:CDS | 30.0% | |
| TACCAATGATAGAAATGGAA+GGG | + | chr8_1:18481038-18481057 | Msa1183240:CDS | 30.0% | |
| TTTACAAATGTGGATGATTG+AGG | + | chr8_1:18481110-18481129 | Msa1183240:CDS | 30.0% | |
| TTACAAATGTGGATGATTGA+GGG | + | chr8_1:18481111-18481130 | Msa1183240:CDS | 30.0% | |
| !! | CTTTTGTGCAATCTTTAGAA+GGG | - | chr8_1:18481220-18481239 | None:intergenic | 30.0% |
| ! | ACTTTTGTGCAATCTTTAGA+AGG | - | chr8_1:18481221-18481240 | None:intergenic | 30.0% |
| ATAACAAAAGAATGTGCACA+AGG | - | chr8_1:18480063-18480082 | None:intergenic | 30.0% | |
| ! | TGAACCATTGATGACATTTA+TGG | + | chr8_1:18480279-18480298 | Msa1183240:CDS | 30.0% |
| GATTCCATAAATGTCATCAA+TGG | - | chr8_1:18480286-18480305 | None:intergenic | 30.0% | |
| ! | ACAGAGTTTTTCTTCTTTGA+TGG | + | chr8_1:18480743-18480762 | Msa1183240:CDS | 30.0% |
| TGGTGATAATTGATACATCT+TGG | - | chr8_1:18480819-18480838 | None:intergenic | 30.0% | |
| AACTCCAAATTGAAATGTGT+AGG | + | chr8_1:18480936-18480955 | Msa1183240:intron | 30.0% | |
| GCATCTTTATAAATTGGTAC+AGG | - | chr8_1:18480991-18481010 | None:intergenic | 30.0% | |
| ACAGTTACCAATGATAGAAA+TGG | + | chr8_1:18481033-18481052 | Msa1183240:CDS | 30.0% | |
| TTACCAATGATAGAAATGGA+AGG | + | chr8_1:18481037-18481056 | Msa1183240:CDS | 30.0% | |
| TACCAATGATAGAAATGGAA+GGG | + | chr8_1:18481038-18481057 | Msa1183240:CDS | 30.0% | |
| TTTACAAATGTGGATGATTG+AGG | + | chr8_1:18481110-18481129 | Msa1183240:CDS | 30.0% | |
| TTACAAATGTGGATGATTGA+GGG | + | chr8_1:18481111-18481130 | Msa1183240:CDS | 30.0% | |
| !! | CTTTTGTGCAATCTTTAGAA+GGG | - | chr8_1:18481220-18481239 | None:intergenic | 30.0% |
| ! | ACTTTTGTGCAATCTTTAGA+AGG | - | chr8_1:18481221-18481240 | None:intergenic | 30.0% |
| GTTACAACTATTGAATTGGC+TGG | + | chr8_1:18480202-18480221 | Msa1183240:CDS | 35.0% | |
| TTCAGGTATCAATCCAATTC+AGG | + | chr8_1:18480225-18480244 | Msa1183240:CDS | 35.0% | |
| TGAATCTCTTGTACCTGAAT+TGG | - | chr8_1:18480241-18480260 | None:intergenic | 35.0% | |
| ! | ACAAGAATCACCTTTTCCTT+TGG | - | chr8_1:18480316-18480335 | None:intergenic | 35.0% |
| AAGGAAAAGGTGATTCTTGT+TGG | + | chr8_1:18480316-18480335 | Msa1183240:CDS | 35.0% | |
| ATTCTTGTTGGTCATAGTCT+TGG | + | chr8_1:18480328-18480347 | Msa1183240:CDS | 35.0% | |
| !!! | CTGCAACTGAGATTTTTTGA+GGG | - | chr8_1:18480387-18480406 | None:intergenic | 35.0% |
| !!! | ACTGCAACTGAGATTTTTTG+AGG | - | chr8_1:18480388-18480407 | None:intergenic | 35.0% |
| ATCTTGGATGCCATGAATTT+GGG | - | chr8_1:18480803-18480822 | None:intergenic | 35.0% | |
| GTATCAATTATCACCATCTG+AGG | + | chr8_1:18480823-18480842 | Msa1183240:CDS | 35.0% | |
| TACCCTTCCATTTCTATCAT+TGG | - | chr8_1:18481043-18481062 | None:intergenic | 35.0% | |
| !! | AAGTGACAATTTGATAACGG+AGG | + | chr8_1:18481086-18481105 | Msa1183240:CDS | 35.0% |
| TAACGGAGGATTTACAAATG+TGG | + | chr8_1:18481100-18481119 | Msa1183240:CDS | 35.0% | |
| GTTACAACTATTGAATTGGC+TGG | + | chr8_1:18480202-18480221 | Msa1183240:CDS | 35.0% | |
| TTCAGGTATCAATCCAATTC+AGG | + | chr8_1:18480225-18480244 | Msa1183240:CDS | 35.0% | |
| TGAATCTCTTGTACCTGAAT+TGG | - | chr8_1:18480241-18480260 | None:intergenic | 35.0% | |
| ! | ACAAGAATCACCTTTTCCTT+TGG | - | chr8_1:18480316-18480335 | None:intergenic | 35.0% |
| AAGGAAAAGGTGATTCTTGT+TGG | + | chr8_1:18480316-18480335 | Msa1183240:CDS | 35.0% | |
| ATTCTTGTTGGTCATAGTCT+TGG | + | chr8_1:18480328-18480347 | Msa1183240:CDS | 35.0% | |
| !!! | CTGCAACTGAGATTTTTTGA+GGG | - | chr8_1:18480387-18480406 | None:intergenic | 35.0% |
| !!! | ACTGCAACTGAGATTTTTTG+AGG | - | chr8_1:18480388-18480407 | None:intergenic | 35.0% |
| ATCTTGGATGCCATGAATTT+GGG | - | chr8_1:18480803-18480822 | None:intergenic | 35.0% | |
| GTATCAATTATCACCATCTG+AGG | + | chr8_1:18480823-18480842 | Msa1183240:CDS | 35.0% | |
| TACCCTTCCATTTCTATCAT+TGG | - | chr8_1:18481043-18481062 | None:intergenic | 35.0% | |
| !! | AAGTGACAATTTGATAACGG+AGG | + | chr8_1:18481086-18481105 | Msa1183240:CDS | 35.0% |
| TAACGGAGGATTTACAAATG+TGG | + | chr8_1:18481100-18481119 | Msa1183240:CDS | 35.0% | |
| !! | GCAAACTTTGTGCTGATTCA+TGG | + | chr8_1:18480115-18480134 | Msa1183240:CDS | 40.0% |
| !! | AACTTTGTGCTGATTCATGG+TGG | + | chr8_1:18480118-18480137 | Msa1183240:CDS | 40.0% |
| ! | ACTATTGAATTGGCTGGTTC+AGG | + | chr8_1:18480208-18480227 | Msa1183240:CDS | 40.0% |
| TATGGAATCTCTTCCTCCAA+AGG | + | chr8_1:18480297-18480316 | Msa1183240:CDS | 40.0% | |
| ATCTCTTCCTCCAAAGGAAA+AGG | + | chr8_1:18480303-18480322 | Msa1183240:CDS | 40.0% | |
| ! | AGAATCACCTTTTCCTTTGG+AGG | - | chr8_1:18480313-18480332 | None:intergenic | 40.0% |
| ! | TTGTTGGTCATAGTCTTGGT+GGG | + | chr8_1:18480332-18480351 | Msa1183240:CDS | 40.0% |
| ! | CTTTTCCATAGCAACAGATG+TGG | - | chr8_1:18480362-18480381 | None:intergenic | 40.0% |
| ATACCCAGTTGTTCTTCAAG+AGG | + | chr8_1:18480444-18480463 | Msa1183240:CDS | 40.0% | |
| GTACCTCTTGAAGAACAACT+GGG | - | chr8_1:18480450-18480469 | None:intergenic | 40.0% | |
| TGTACCTCTTGAAGAACAAC+TGG | - | chr8_1:18480451-18480470 | None:intergenic | 40.0% | |
| ATTGGTTGGACCCAAATTCA+TGG | + | chr8_1:18480790-18480809 | Msa1183240:CDS | 40.0% | |
| CATCTTGGATGCCATGAATT+TGG | - | chr8_1:18480804-18480823 | None:intergenic | 40.0% | |
| AATTGGTACAGGTCTCACTA+GGG | - | chr8_1:18480980-18480999 | None:intergenic | 40.0% | |
| AAATTGGTACAGGTCTCACT+AGG | - | chr8_1:18480981-18481000 | None:intergenic | 40.0% | |
| ATCACTTCCACCTTCTCAAA+TGG | - | chr8_1:18481144-18481163 | None:intergenic | 40.0% | |
| GATAGAGGATTCTGATCACA+TGG | + | chr8_1:18481161-18481180 | Msa1183240:CDS | 40.0% | |
| ! | TTGTGCAATCTTTAGAAGGG+TGG | - | chr8_1:18481217-18481236 | None:intergenic | 40.0% |
| !! | GCAAACTTTGTGCTGATTCA+TGG | + | chr8_1:18480115-18480134 | Msa1183240:CDS | 40.0% |
| !! | AACTTTGTGCTGATTCATGG+TGG | + | chr8_1:18480118-18480137 | Msa1183240:CDS | 40.0% |
| ! | ACTATTGAATTGGCTGGTTC+AGG | + | chr8_1:18480208-18480227 | Msa1183240:CDS | 40.0% |
| TATGGAATCTCTTCCTCCAA+AGG | + | chr8_1:18480297-18480316 | Msa1183240:CDS | 40.0% | |
| ATCTCTTCCTCCAAAGGAAA+AGG | + | chr8_1:18480303-18480322 | Msa1183240:CDS | 40.0% | |
| ! | AGAATCACCTTTTCCTTTGG+AGG | - | chr8_1:18480313-18480332 | None:intergenic | 40.0% |
| ! | TTGTTGGTCATAGTCTTGGT+GGG | + | chr8_1:18480332-18480351 | Msa1183240:CDS | 40.0% |
| ! | CTTTTCCATAGCAACAGATG+TGG | - | chr8_1:18480362-18480381 | None:intergenic | 40.0% |
| ATACCCAGTTGTTCTTCAAG+AGG | + | chr8_1:18480444-18480463 | Msa1183240:CDS | 40.0% | |
| GTACCTCTTGAAGAACAACT+GGG | - | chr8_1:18480450-18480469 | None:intergenic | 40.0% | |
| TGTACCTCTTGAAGAACAAC+TGG | - | chr8_1:18480451-18480470 | None:intergenic | 40.0% | |
| ATTGGTTGGACCCAAATTCA+TGG | + | chr8_1:18480790-18480809 | Msa1183240:CDS | 40.0% | |
| CATCTTGGATGCCATGAATT+TGG | - | chr8_1:18480804-18480823 | None:intergenic | 40.0% | |
| AATTGGTACAGGTCTCACTA+GGG | - | chr8_1:18480980-18480999 | None:intergenic | 40.0% | |
| AAATTGGTACAGGTCTCACT+AGG | - | chr8_1:18480981-18481000 | None:intergenic | 40.0% | |
| ATCACTTCCACCTTCTCAAA+TGG | - | chr8_1:18481144-18481163 | None:intergenic | 40.0% | |
| GATAGAGGATTCTGATCACA+TGG | + | chr8_1:18481161-18481180 | Msa1183240:CDS | 40.0% | |
| ! | TTGTGCAATCTTTAGAAGGG+TGG | - | chr8_1:18481217-18481236 | None:intergenic | 40.0% |
| TATACCAACACCATGCACCA+TGG | - | chr8_1:18480147-18480166 | None:intergenic | 45.0% | |
| !! | TGGTGCATGGTGTTGGTATA+AGG | + | chr8_1:18480147-18480166 | Msa1183240:CDS | 45.0% |
| !! | TGCATGGTGTTGGTATAAGG+TGG | + | chr8_1:18480150-18480169 | Msa1183240:CDS | 45.0% |
| GCAACTATGCTGAAATCTGC+TGG | + | chr8_1:18480172-18480191 | Msa1183240:CDS | 45.0% | |
| ! | CTTGTTGGTCATAGTCTTGG+TGG | + | chr8_1:18480331-18480350 | Msa1183240:CDS | 45.0% |
| ! | TGTTGGTCATAGTCTTGGTG+GGG | + | chr8_1:18480333-18480352 | Msa1183240:CDS | 45.0% |
| GAAGAACAACTGGGTATGAG+AGG | - | chr8_1:18480441-18480460 | None:intergenic | 45.0% | |
| !! | CCTTCTAGCTTGCTACATGA+TGG | - | chr8_1:18480705-18480724 | None:intergenic | 45.0% |
| CCATCATGTAGCAAGCTAGA+AGG | + | chr8_1:18480702-18480721 | Msa1183240:intron | 45.0% | |
| ! | CTAGCAGTTGCAGGTTTGTT+GGG | - | chr8_1:18480770-18480789 | None:intergenic | 45.0% |
| TCTAGCAGTTGCAGGTTTGT+TGG | - | chr8_1:18480771-18480790 | None:intergenic | 45.0% | |
| CAAACCTGCAACTGCTAGAT+TGG | + | chr8_1:18480772-18480791 | Msa1183240:CDS | 45.0% | |
| TCTCACTAGGGACAATGCAA+GGG | - | chr8_1:18480968-18480987 | None:intergenic | 45.0% | |
| ATGTGGATGATTGAGGGAAG+TGG | + | chr8_1:18481117-18481136 | Msa1183240:CDS | 45.0% | |
| AAGTGGTCCATTTGAGAAGG+TGG | + | chr8_1:18481134-18481153 | Msa1183240:CDS | 45.0% | |
| TGAGAAGGTGGAAGTGATAG+AGG | + | chr8_1:18481146-18481165 | Msa1183240:CDS | 45.0% | |
| AGGGTGGAACTAAGCTTCTT+TGG | - | chr8_1:18481201-18481220 | None:intergenic | 45.0% | |
| TATACCAACACCATGCACCA+TGG | - | chr8_1:18480147-18480166 | None:intergenic | 45.0% | |
| !! | TGGTGCATGGTGTTGGTATA+AGG | + | chr8_1:18480147-18480166 | Msa1183240:CDS | 45.0% |
| !! | TGCATGGTGTTGGTATAAGG+TGG | + | chr8_1:18480150-18480169 | Msa1183240:CDS | 45.0% |
| GCAACTATGCTGAAATCTGC+TGG | + | chr8_1:18480172-18480191 | Msa1183240:CDS | 45.0% | |
| ! | CTTGTTGGTCATAGTCTTGG+TGG | + | chr8_1:18480331-18480350 | Msa1183240:CDS | 45.0% |
| ! | TGTTGGTCATAGTCTTGGTG+GGG | + | chr8_1:18480333-18480352 | Msa1183240:CDS | 45.0% |
| GAAGAACAACTGGGTATGAG+AGG | - | chr8_1:18480441-18480460 | None:intergenic | 45.0% | |
| !! | CCTTCTAGCTTGCTACATGA+TGG | - | chr8_1:18480705-18480724 | None:intergenic | 45.0% |
| CCATCATGTAGCAAGCTAGA+AGG | + | chr8_1:18480702-18480721 | Msa1183240:intron | 45.0% | |
| ! | CTAGCAGTTGCAGGTTTGTT+GGG | - | chr8_1:18480770-18480789 | None:intergenic | 45.0% |
| TCTAGCAGTTGCAGGTTTGT+TGG | - | chr8_1:18480771-18480790 | None:intergenic | 45.0% | |
| CAAACCTGCAACTGCTAGAT+TGG | + | chr8_1:18480772-18480791 | Msa1183240:CDS | 45.0% | |
| TCTCACTAGGGACAATGCAA+GGG | - | chr8_1:18480968-18480987 | None:intergenic | 45.0% | |
| ATGTGGATGATTGAGGGAAG+TGG | + | chr8_1:18481117-18481136 | Msa1183240:CDS | 45.0% | |
| AAGTGGTCCATTTGAGAAGG+TGG | + | chr8_1:18481134-18481153 | Msa1183240:CDS | 45.0% | |
| TGAGAAGGTGGAAGTGATAG+AGG | + | chr8_1:18481146-18481165 | Msa1183240:CDS | 45.0% | |
| AGGGTGGAACTAAGCTTCTT+TGG | - | chr8_1:18481201-18481220 | None:intergenic | 45.0% | |
| ! | CTGATTCATGGTGGAAGCCA+TGG | + | chr8_1:18480127-18480146 | Msa1183240:CDS | 50.0% |
| GGTGTCCACATCTGTTGCTA+TGG | + | chr8_1:18480354-18480373 | Msa1183240:CDS | 50.0% | |
| CCAACCAATCTAGCAGTTGC+AGG | - | chr8_1:18480779-18480798 | None:intergenic | 50.0% | |
| CCTGCAACTGCTAGATTGGT+TGG | + | chr8_1:18480776-18480795 | Msa1183240:CDS | 50.0% | |
| GTCTCACTAGGGACAATGCA+AGG | - | chr8_1:18480969-18480988 | None:intergenic | 50.0% | |
| GGGAAGTGGTCCATTTGAGA+AGG | + | chr8_1:18481131-18481150 | Msa1183240:CDS | 50.0% | |
| ! | CTGATTCATGGTGGAAGCCA+TGG | + | chr8_1:18480127-18480146 | Msa1183240:CDS | 50.0% |
| GGTGTCCACATCTGTTGCTA+TGG | + | chr8_1:18480354-18480373 | Msa1183240:CDS | 50.0% | |
| CCAACCAATCTAGCAGTTGC+AGG | - | chr8_1:18480779-18480798 | None:intergenic | 50.0% | |
| CCTGCAACTGCTAGATTGGT+TGG | + | chr8_1:18480776-18480795 | Msa1183240:CDS | 50.0% | |
| GTCTCACTAGGGACAATGCA+AGG | - | chr8_1:18480969-18480988 | None:intergenic | 50.0% | |
| GGGAAGTGGTCCATTTGAGA+AGG | + | chr8_1:18481131-18481150 | Msa1183240:CDS | 50.0% | |
| ! | ATGGTGGAAGCCATGGTGCA+TGG | + | chr8_1:18480134-18480153 | Msa1183240:CDS | 55.0% |
| GAAGCCATGGTGCATGGTGT+TGG | + | chr8_1:18480140-18480159 | Msa1183240:CDS | 55.0% | |
| ! | ATGGTGGAAGCCATGGTGCA+TGG | + | chr8_1:18480134-18480153 | Msa1183240:CDS | 55.0% |
| GAAGCCATGGTGCATGGTGT+TGG | + | chr8_1:18480140-18480159 | Msa1183240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 18480040 | 18481245 | 18480040 | ID=Msa1183240;Name=Msa1183240 |
| chr8_1 | mRNA | 18480040 | 18481245 | 18480040 | ID=Msa1183240-mRNA-1;Parent=Msa1183240;Name=Msa1183240-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|281 |
| chr8_1 | exon | 18480040 | 18480465 | 18480040 | ID=Msa1183240-mRNA-1:exon:7083;Parent=Msa1183240-mRNA-1 |
| chr8_1 | exon | 18480713 | 18480844 | 18480713 | ID=Msa1183240-mRNA-1:exon:7084;Parent=Msa1183240-mRNA-1 |
| chr8_1 | exon | 18480958 | 18481245 | 18480958 | ID=Msa1183240-mRNA-1:exon:7085;Parent=Msa1183240-mRNA-1 |
| chr8_1 | CDS | 18480040 | 18480465 | 18480040 | ID=Msa1183240-mRNA-1:cds;Parent=Msa1183240-mRNA-1 |
| chr8_1 | CDS | 18480713 | 18480844 | 18480713 | ID=Msa1183240-mRNA-1:cds;Parent=Msa1183240-mRNA-1 |
| chr8_1 | CDS | 18480958 | 18481245 | 18480958 | ID=Msa1183240-mRNA-1:cds;Parent=Msa1183240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
