Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993700 | XP_024627785.1 | 73.810 | 42 | 11 | 0 | 257 | 298 | 27 | 68 | 2.72e-12 | 77.8 |
| Msa0993700 | XP_024627785.1 | 93.487 | 261 | 10 | 2 | 1 | 254 | 1 | 261 | 9.23e-176 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993700 | sp|D7SSD8|MJE1_VITVI | 52.119 | 236 | 103 | 5 | 27 | 254 | 7 | 240 | 1.09e-75 | 235 |
| Msa0993700 | sp|D7SSD8|MJE1_VITVI | 73.810 | 42 | 11 | 0 | 255 | 296 | 5 | 46 | 9.63e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993700 | A0A396GD32 | 73.810 | 42 | 11 | 0 | 257 | 298 | 27 | 68 | 1.30e-12 | 77.8 |
| Msa0993700 | A0A396GD32 | 93.487 | 261 | 10 | 2 | 1 | 254 | 1 | 261 | 4.41e-176 | 497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0633940 | Msa0993700 | 0.809742 | 1.627795e-50 | -8.615850e-47 |
| Msa0633970 | Msa0993700 | 0.812963 | 3.254761e-51 | -8.615850e-47 |
| Msa0150920 | Msa0993700 | 0.806056 | 9.898511e-50 | -8.615850e-47 |
| Msa0366510 | Msa0993700 | 0.825730 | 3.996699e-54 | -8.615850e-47 |
| Msa0459300 | Msa0993700 | 0.801883 | 7.296126e-49 | -8.615850e-47 |
| Msa0993700 | Msa1148200 | 0.812682 | 3.749885e-51 | -8.615850e-47 |
| Msa0993700 | Msa1183240 | 0.858216 | 9.594131e-63 | -8.615850e-47 |
| Msa0993700 | Msa1309390 | 0.839960 | 1.158997e-57 | -8.615850e-47 |
| Msa0593870 | Msa0993700 | 0.814833 | 1.259911e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993700 | MtrunA17_Chr8g0336391 | 93.487 | 261 | 10 | 2 | 1 | 254 | 1 | 261 | 8.49e-180 | 497 |
| Msa0993700 | MtrunA17_Chr8g0336391 | 73.810 | 42 | 11 | 0 | 257 | 298 | 27 | 68 | 2.50e-16 | 77.8 |
| Msa0993700 | MtrunA17_Chr8g0336411 | 65.267 | 262 | 82 | 4 | 1 | 254 | 1 | 261 | 1.03e-116 | 338 |
| Msa0993700 | MtrunA17_Chr8g0336411 | 79.070 | 43 | 9 | 0 | 256 | 298 | 27 | 69 | 3.60e-18 | 82.8 |
| Msa0993700 | MtrunA17_Chr8g0336441 | 65.517 | 261 | 80 | 3 | 1 | 254 | 1 | 258 | 1.47e-115 | 335 |
| Msa0993700 | MtrunA17_Chr8g0336441 | 74.419 | 43 | 11 | 0 | 256 | 298 | 26 | 68 | 1.15e-17 | 81.6 |
| Msa0993700 | MtrunA17_Chr8g0336401 | 64.394 | 264 | 84 | 4 | 1 | 254 | 1 | 264 | 2.51e-114 | 332 |
| Msa0993700 | MtrunA17_Chr8g0336401 | 74.419 | 43 | 11 | 0 | 256 | 298 | 26 | 68 | 1.76e-17 | 80.9 |
| Msa0993700 | MtrunA17_Chr3g0104871 | 64.000 | 250 | 80 | 3 | 12 | 254 | 4 | 250 | 4.48e-106 | 310 |
| Msa0993700 | MtrunA17_Chr3g0104871 | 50.769 | 65 | 25 | 1 | 256 | 313 | 18 | 82 | 8.21e-16 | 76.3 |
| Msa0993700 | MtrunA17_Chr8g0336381 | 61.441 | 236 | 83 | 3 | 27 | 254 | 7 | 242 | 3.37e-102 | 300 |
| Msa0993700 | MtrunA17_Chr8g0336381 | 93.023 | 43 | 3 | 0 | 255 | 297 | 5 | 47 | 1.07e-23 | 97.8 |
| Msa0993700 | MtrunA17_Chr5g0402871 | 50.417 | 240 | 110 | 4 | 23 | 254 | 1 | 239 | 8.92e-81 | 245 |
| Msa0993700 | MtrunA17_Chr5g0402871 | 78.049 | 41 | 9 | 0 | 257 | 297 | 5 | 45 | 1.45e-16 | 78.2 |
| Msa0993700 | MtrunA17_Chr5g0402851 | 52.542 | 236 | 103 | 4 | 27 | 254 | 8 | 242 | 7.83e-80 | 243 |
| Msa0993700 | MtrunA17_Chr5g0402851 | 75.000 | 44 | 11 | 0 | 254 | 297 | 5 | 48 | 5.88e-17 | 79.3 |
| Msa0993700 | MtrunA17_Chr5g0402841 | 49.153 | 236 | 110 | 5 | 27 | 254 | 8 | 241 | 3.11e-68 | 213 |
| Msa0993700 | MtrunA17_Chr5g0402841 | 75.000 | 44 | 11 | 0 | 254 | 297 | 5 | 48 | 5.30e-17 | 79.3 |
| Msa0993700 | MtrunA17_Chr8g0374141 | 39.241 | 237 | 128 | 7 | 27 | 254 | 53 | 282 | 1.22e-47 | 162 |
| Msa0993700 | MtrunA17_Chr8g0374141 | 61.905 | 42 | 16 | 0 | 255 | 296 | 51 | 92 | 9.27e-12 | 64.7 |
| Msa0993700 | MtrunA17_Chr5g0402901 | 38.819 | 237 | 129 | 7 | 27 | 254 | 12 | 241 | 3.26e-46 | 157 |
| Msa0993700 | MtrunA17_Chr5g0402901 | 42.857 | 70 | 33 | 1 | 252 | 314 | 7 | 76 | 1.24e-12 | 67.0 |
| Msa0993700 | MtrunA17_Chr5g0402881 | 37.553 | 237 | 132 | 8 | 27 | 254 | 29 | 258 | 3.22e-42 | 147 |
| Msa0993700 | MtrunA17_Chr5g0402881 | 50.000 | 58 | 29 | 0 | 252 | 309 | 24 | 81 | 2.79e-13 | 68.9 |
| Msa0993700 | MtrunA17_Chr5g0428471 | 35.319 | 235 | 139 | 5 | 27 | 253 | 30 | 259 | 2.55e-38 | 137 |
| Msa0993700 | MtrunA17_Chr7g0219561 | 36.017 | 236 | 136 | 6 | 27 | 253 | 124 | 353 | 1.22e-36 | 135 |
| Msa0993700 | MtrunA17_Chr3g0128581 | 34.468 | 235 | 140 | 5 | 27 | 253 | 36 | 264 | 1.35e-35 | 130 |
| Msa0993700 | MtrunA17_Chr3g0077351 | 30.041 | 243 | 156 | 5 | 20 | 253 | 87 | 324 | 1.42e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993700 | AT3G50440.1 | 41.525 | 236 | 126 | 5 | 28 | 254 | 22 | 254 | 9.37e-57 | 185 |
| Msa0993700 | AT2G23620.1 | 40.756 | 238 | 127 | 7 | 27 | 254 | 9 | 242 | 4.09e-49 | 165 |
| Msa0993700 | AT2G23620.1 | 59.524 | 42 | 17 | 0 | 255 | 296 | 7 | 48 | 6.66e-13 | 68.2 |
| Msa0993700 | AT2G23600.1 | 40.756 | 238 | 127 | 7 | 27 | 254 | 9 | 242 | 1.03e-48 | 164 |
| Msa0993700 | AT2G23600.1 | 61.905 | 42 | 16 | 0 | 255 | 296 | 7 | 48 | 4.58e-13 | 68.6 |
| Msa0993700 | AT2G23600.2 | 40.756 | 238 | 127 | 7 | 27 | 254 | 24 | 257 | 1.38e-48 | 164 |
| Msa0993700 | AT2G23600.2 | 61.905 | 42 | 16 | 0 | 255 | 296 | 22 | 63 | 5.69e-13 | 68.6 |
| Msa0993700 | AT2G23610.1 | 41.350 | 237 | 123 | 8 | 29 | 254 | 11 | 242 | 1.23e-46 | 158 |
| Msa0993700 | AT2G23610.1 | 53.333 | 45 | 21 | 0 | 252 | 296 | 4 | 48 | 3.97e-13 | 68.6 |
| Msa0993700 | AT2G23580.1 | 39.004 | 241 | 134 | 6 | 24 | 254 | 5 | 242 | 2.20e-44 | 152 |
| Msa0993700 | AT2G23580.1 | 46.269 | 67 | 29 | 1 | 255 | 314 | 6 | 72 | 5.15e-14 | 71.2 |
| Msa0993700 | AT2G23550.1 | 38.430 | 242 | 134 | 7 | 24 | 254 | 5 | 242 | 3.47e-43 | 149 |
| Msa0993700 | AT2G23550.1 | 46.970 | 66 | 28 | 1 | 255 | 313 | 6 | 71 | 1.86e-12 | 66.6 |
| Msa0993700 | AT2G23550.4 | 38.430 | 242 | 134 | 7 | 24 | 254 | 12 | 249 | 3.60e-43 | 149 |
| Msa0993700 | AT2G23550.4 | 46.970 | 66 | 28 | 1 | 255 | 313 | 13 | 78 | 1.85e-12 | 67.0 |
| Msa0993700 | AT2G23560.1 | 37.759 | 241 | 134 | 7 | 24 | 254 | 5 | 239 | 4.91e-43 | 149 |
| Msa0993700 | AT2G23560.1 | 44.776 | 67 | 30 | 1 | 255 | 314 | 6 | 72 | 3.57e-15 | 74.3 |
| Msa0993700 | AT2G23590.1 | 37.553 | 237 | 127 | 7 | 27 | 254 | 27 | 251 | 2.71e-42 | 147 |
| Msa0993700 | AT2G23590.1 | 55.102 | 49 | 22 | 0 | 248 | 296 | 18 | 66 | 2.31e-14 | 72.4 |
| Msa0993700 | AT4G37150.1 | 36.287 | 237 | 138 | 6 | 27 | 254 | 3 | 235 | 5.94e-42 | 146 |
| Msa0993700 | AT4G37150.1 | 58.537 | 41 | 17 | 0 | 256 | 296 | 2 | 42 | 1.80e-12 | 66.6 |
| Msa0993700 | AT5G10300.1 | 36.170 | 235 | 140 | 4 | 27 | 254 | 6 | 237 | 9.85e-40 | 140 |
| Msa0993700 | AT5G10300.1 | 60.976 | 41 | 16 | 0 | 257 | 297 | 6 | 46 | 1.46e-11 | 63.9 |
| Msa0993700 | AT5G58310.1 | 35.000 | 240 | 139 | 5 | 27 | 253 | 5 | 240 | 1.73e-39 | 140 |
| Msa0993700 | AT5G58310.1 | 55.814 | 43 | 19 | 0 | 255 | 297 | 3 | 45 | 1.18e-12 | 67.4 |
| Msa0993700 | AT3G29770.1 | 37.607 | 234 | 133 | 5 | 28 | 253 | 139 | 367 | 2.38e-37 | 137 |
| Msa0993700 | AT3G29770.1 | 60.417 | 48 | 18 | 1 | 252 | 298 | 132 | 179 | 2.51e-12 | 67.4 |
| Msa0993700 | AT4G16690.1 | 35.417 | 240 | 130 | 6 | 27 | 253 | 12 | 239 | 6.19e-37 | 133 |
| Msa0993700 | AT1G33990.1 | 32.766 | 235 | 144 | 6 | 28 | 253 | 98 | 327 | 4.80e-36 | 133 |
| Msa0993700 | AT3G10870.1 | 32.766 | 235 | 148 | 4 | 27 | 253 | 20 | 252 | 2.64e-35 | 129 |
| Msa0993700 | AT1G26360.1 | 35.470 | 234 | 138 | 5 | 28 | 253 | 190 | 418 | 1.60e-34 | 130 |
| Msa0993700 | AT4G09900.1 | 30.213 | 235 | 150 | 6 | 28 | 253 | 99 | 328 | 2.29e-33 | 126 |
| Msa0993700 | AT2G23550.2 | 34.468 | 235 | 124 | 6 | 24 | 254 | 5 | 213 | 1.17e-32 | 121 |
| Msa0993700 | AT2G23600.3 | 41.718 | 163 | 84 | 5 | 27 | 179 | 24 | 185 | 1.46e-32 | 119 |
| Msa0993700 | AT2G23600.3 | 61.905 | 42 | 16 | 0 | 255 | 296 | 22 | 63 | 1.76e-13 | 68.2 |
| Msa0993700 | AT1G69240.1 | 33.898 | 236 | 141 | 6 | 28 | 253 | 188 | 418 | 8.71e-32 | 123 |
| Msa0993700 | AT2G23610.2 | 35.593 | 236 | 97 | 8 | 27 | 254 | 9 | 197 | 1.18e-31 | 118 |
| Msa0993700 | AT2G23610.2 | 57.143 | 42 | 18 | 0 | 255 | 296 | 7 | 48 | 2.80e-13 | 68.6 |
| Msa0993700 | AT2G23550.3 | 41.818 | 165 | 84 | 5 | 24 | 177 | 12 | 175 | 3.29e-31 | 116 |
| Msa0993700 | AT2G23550.3 | 46.970 | 66 | 28 | 1 | 255 | 313 | 13 | 78 | 1.56e-12 | 65.9 |
| Msa0993700 | AT2G23580.2 | 40.361 | 166 | 89 | 4 | 24 | 179 | 5 | 170 | 7.17e-31 | 115 |
| Msa0993700 | AT2G23580.2 | 46.269 | 67 | 29 | 1 | 255 | 314 | 6 | 72 | 2.26e-14 | 71.2 |
| Msa0993700 | AT5G10300.2 | 38.889 | 162 | 92 | 2 | 27 | 181 | 6 | 167 | 1.38e-30 | 115 |
| Msa0993700 | AT5G10300.2 | 60.976 | 41 | 16 | 0 | 257 | 297 | 6 | 46 | 9.90e-12 | 63.5 |
| Msa0993700 | AT4G37140.1 | 46.602 | 103 | 48 | 2 | 27 | 122 | 3 | 105 | 8.05e-28 | 105 |
| Msa0993700 | AT4G37140.1 | 58.537 | 41 | 17 | 0 | 256 | 296 | 2 | 42 | 2.15e-13 | 66.6 |
| Msa0993700 | AT2G23570.1 | 37.888 | 161 | 95 | 3 | 96 | 254 | 1 | 158 | 5.26e-25 | 99.4 |
| Msa0993700 | AT4G37140.2 | 44.444 | 90 | 43 | 2 | 27 | 109 | 3 | 92 | 1.71e-22 | 90.5 |
| Msa0993700 | AT4G37140.2 | 58.537 | 41 | 17 | 0 | 256 | 296 | 2 | 42 | 3.22e-14 | 68.2 |
| Msa0993700 | AT3G29770.2 | 41.489 | 94 | 53 | 1 | 28 | 119 | 139 | 232 | 3.86e-17 | 80.5 |
| Msa0993700 | AT3G29770.2 | 60.417 | 48 | 18 | 1 | 252 | 298 | 132 | 179 | 3.57e-12 | 66.2 |
Find 76 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCATTGATGACATTTA+TGG | 0.079683 | 6_4:+66724424 | Msa0993700:CDS |
| CATCTTGGATGCCATGAATT+TGG | 0.134984 | 6_4:-66724932 | None:intergenic |
| TTGCATCTGCTTTGGATAAT+TGG | 0.165856 | 6_4:-66727567 | None:intergenic |
| TAGAAGGATTAGTTCTTTAA+TGG | 0.232720 | 6_4:+66724849 | Msa0993700:CDS |
| AGTTCAGCATCTTTATAAAT+TGG | 0.246349 | 6_4:-66725125 | None:intergenic |
| GCACAATTAACACAAATTAT+AGG | 0.265798 | 6_4:-66724239 | None:intergenic |
| TGAATCTCTTGTACCTGAAT+TGG | 0.306427 | 6_4:-66724383 | None:intergenic |
| TACCCTTCCATTTCTATCAT+TGG | 0.315130 | 6_4:-66725171 | None:intergenic |
| ATCTTGGATGCCATGAATTT+GGG | 0.341185 | 6_4:-66724931 | None:intergenic |
| TGAACTTCTTGCATCTGCTT+TGG | 0.355856 | 6_4:-66727575 | None:intergenic |
| TAATGTTACAACTATTGAAT+TGG | 0.359160 | 6_4:+66724343 | Msa0993700:CDS |
| AAGCACTTTGTGTTGATTCA+TGG | 0.366129 | 6_4:+66727444 | Msa0993700:CDS |
| CAAACCTGCAACTGCTAGAT+TGG | 0.368595 | 6_4:+66724903 | Msa0993700:CDS |
| TGAGAAGGTGGAAGTGATAG+AGG | 0.372293 | 6_4:+66725277 | Msa0993700:CDS |
| CTAGCAGTTGCAGGTTTGTT+GGG | 0.377021 | 6_4:-66724898 | None:intergenic |
| CCAAAGGAAAAGGTGATTCT+TGG | 0.379863 | 6_4:+66724458 | Msa0993700:CDS |
| TGTACCTCTTGAAGAACAAC+TGG | 0.381557 | 6_4:-66724578 | None:intergenic |
| TTCAGGTATCAATCCAATTC+AGG | 0.386595 | 6_4:+66724370 | Msa0993700:intron |
| GCAAACTTTGTGCTGATTCA+TGG | 0.390525 | 6_4:+66724260 | Msa0993700:CDS |
| TCTAGCAGTTGCAGGTTTGT+TGG | 0.395041 | 6_4:-66724899 | None:intergenic |
| TGGTGCATGGTGTTGGTATA+AGG | 0.400591 | 6_4:+66724292 | Msa0993700:CDS |
| ATTGGTTGGACCCAAATTCA+TGG | 0.411752 | 6_4:+66724921 | Msa0993700:CDS |
| ACAGTTACCAATGATAGAAA+TGG | 0.420687 | 6_4:+66725164 | Msa0993700:CDS |
| ATCACTTCCACCTTCTCAAA+TGG | 0.422893 | 6_4:-66725272 | None:intergenic |
| CCAACCAATCTAGCAGTTGC+AGG | 0.423936 | 6_4:-66724907 | None:intergenic |
| TTTACAAATGTGGATGATTG+AGG | 0.432754 | 6_4:+66725241 | Msa0993700:CDS |
| AAATTTATAAGATGATGAAA+AGG | 0.434435 | 6_4:+66724174 | None:intergenic |
| CCATCATGTAGCAAGCTAGA+AGG | 0.455347 | 6_4:+66724833 | Msa0993700:intron |
| GTTACAACTATTGAATTGGC+TGG | 0.461529 | 6_4:+66724347 | Msa0993700:CDS |
| ATCTCTTCCTCCAAAGGAAA+AGG | 0.464266 | 6_4:+66724448 | Msa0993700:CDS |
| CCTGCAACTGCTAGATTGGT+TGG | 0.480634 | 6_4:+66724907 | Msa0993700:CDS |
| GCATCTTTATAAATTGGTAC+AGG | 0.494562 | 6_4:-66725119 | None:intergenic |
| AATTTATAAGATGATGAAAA+GGG | 0.497143 | 6_4:+66724175 | None:intergenic |
| TTGATTCATGGAGGCATCCA+TGG | 0.503684 | 6_4:+66727456 | Msa0993700:CDS |
| TAAATGTCATCAAAGGTTGA+TGG | 0.511909 | 6_4:-66727613 | None:intergenic |
| AAATTGGTACAGGTCTCACT+AGG | 0.515680 | 6_4:-66725109 | None:intergenic |
| GTCTCACTAGGGACAATGCA+AGG | 0.519627 | 6_4:-66725097 | None:intergenic |
| TTACAAATGTGGATGATTGA+GGG | 0.527104 | 6_4:+66725242 | Msa0993700:CDS |
| TGGTGATAATTGATACATCT+TGG | 0.534510 | 6_4:-66724947 | None:intergenic |
| GCAACTGAACTAAAATCAGC+TGG | 0.536127 | 6_4:+66727501 | Msa0993700:CDS |
| CAAAAGTGACAATTTGATAA+CGG | 0.537259 | 6_4:+66725214 | Msa0993700:CDS |
| GATTCCATAAATGTCATCAA+TGG | 0.541738 | 6_4:-66724428 | None:intergenic |
| TATGGAATCTCTTCCTCCAA+AGG | 0.542372 | 6_4:+66724442 | Msa0993700:CDS |
| CTGATTCATGGTGGAAGCCA+TGG | 0.542667 | 6_4:+66724272 | Msa0993700:CDS |
| GGTGTCCACATCTGTTGCTA+TGG | 0.544684 | 6_4:+66724484 | Msa0993700:CDS |
| GCAACTATGCTGAAATCTGC+TGG | 0.549763 | 6_4:+66724317 | Msa0993700:CDS |
| AAGGAAAAGGTGATTCTTGG+TGG | 0.551606 | 6_4:+66724461 | Msa0993700:CDS |
| GCATCCATGGTGCATGGTGT+TGG | 0.551656 | 6_4:+66727469 | Msa0993700:CDS |
| GAAGCCATGGTGCATGGTGT+TGG | 0.558171 | 6_4:+66724285 | Msa0993700:CDS |
| ATACCCAGTTGTTCTTCAAG+AGG | 0.566134 | 6_4:+66724574 | Msa0993700:CDS |
| AAGTGGTCCATTTGAGAAGG+TGG | 0.568965 | 6_4:+66725265 | Msa0993700:CDS |
| AGGAAAAGGTGATTCTTGGT+GGG | 0.581335 | 6_4:+66724462 | Msa0993700:CDS |
| ATTAACATATATACCTCAGA+TGG | 0.582287 | 6_4:-66724967 | None:intergenic |
| GAAGAACAACTGGGTATGAG+AGG | 0.584782 | 6_4:-66724568 | None:intergenic |
| CACTTTGTGTTGATTCATGG+AGG | 0.589315 | 6_4:+66727447 | Msa0993700:CDS |
| TTACCAATGATAGAAATGGA+AGG | 0.600752 | 6_4:+66725168 | Msa0993700:CDS |
| GGGAAGTGGTCCATTTGAGA+AGG | 0.602052 | 6_4:+66725262 | Msa0993700:CDS |
| TAACGGAGGATTTACAAATG+TGG | 0.603019 | 6_4:+66725231 | Msa0993700:CDS |
| ATGTGGATGATTGAGGGAAG+TGG | 0.609911 | 6_4:+66725248 | Msa0993700:CDS |
| TACCAATGATAGAAATGGAA+GGG | 0.611098 | 6_4:+66725169 | Msa0993700:CDS |
| GGAAAAGGTGATTCTTGGTG+GGG | 0.614732 | 6_4:+66724463 | Msa0993700:CDS |
| TAAAGTCACAGCACTAGACA+TGG | 0.625449 | 6_4:+66727527 | Msa0993700:CDS |
| GATAGAGGATTCTGATCACA+TGG | 0.632772 | 6_4:+66725292 | Msa0993700:CDS |
| TATACCAACACCATGCACCA+TGG | 0.635877 | 6_4:-66727473 | None:intergenic |
| GCACTAGACATGGCTGCTTG+TGG | 0.636797 | 6_4:+66727537 | Msa0993700:CDS |
| AATTGGTACAGGTCTCACTA+GGG | 0.640202 | 6_4:-66725108 | None:intergenic |
| ATGGTGGAAGCCATGGTGCA+TGG | 0.643508 | 6_4:+66724279 | Msa0993700:CDS |
| TCTCACTAGGGACAATGCAA+GGG | 0.646794 | 6_4:-66725096 | None:intergenic |
| AAGTGACAATTTGATAACGG+AGG | 0.648075 | 6_4:+66725217 | Msa0993700:CDS |
| ATGGAGGCATCCATGGTGCA+TGG | 0.656739 | 6_4:+66727463 | Msa0993700:CDS |
| TATACCAACACCATGCACCA+TGG | 0.667607 | 6_4:-66724289 | None:intergenic |
| AACTTTGTGCTGATTCATGG+TGG | 0.673588 | 6_4:+66724263 | Msa0993700:CDS |
| GTATCAATTATCACCATCTG+AGG | 0.677571 | 6_4:+66724954 | Msa0993700:CDS |
| ATAACAAAAGAATGTGCACA+AGG | 0.695826 | 6_4:-66724205 | None:intergenic |
| GTACCTCTTGAAGAACAACT+GGG | 0.719501 | 6_4:-66724577 | None:intergenic |
| TGCATGGTGTTGGTATAAGG+TGG | 0.723340 | 6_4:+66724295 | Msa0993700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTATTTTTATTT+TGG | + | chr6_4:66727057-66727076 | Msa0993700:intron | 0.0% |
| !!! | GTTAATTTTTAATTTAATTG+AGG | - | chr6_4:66724684-66724703 | None:intergenic | 10.0% |
| !!! | AAGTCAAAATTAAATTTTTA+TGG | - | chr6_4:66724997-66725016 | None:intergenic | 10.0% |
| !!! | ATAAAAATTTAATTTTGACT+TGG | + | chr6_4:66724996-66725015 | Msa0993700:intron | 10.0% |
| !!! | AGAGAATAATATTTTTTTAA+TGG | + | chr6_4:66726253-66726272 | Msa0993700:intron | 10.0% |
| !! | TTTGTTAATATGAAATTAAA+TGG | + | chr6_4:66726689-66726708 | Msa0993700:intron | 10.0% |
| !!! | ATTTTCAAGAATAATTTTGT+GGG | - | chr6_4:66724643-66724662 | None:intergenic | 15.0% |
| !!! | TTAATCAAAGTTTAAAATTG+TGG | - | chr6_4:66724737-66724756 | None:intergenic | 15.0% |
| !! | TTGCTTATGATAAAAAATTT+AGG | - | chr6_4:66725197-66725216 | None:intergenic | 15.0% |
| !! | ATACTGTTACATTAAAATTA+AGG | - | chr6_4:66725381-66725400 | None:intergenic | 15.0% |
| !!! | AATTTTAATGTAACAGTATA+TGG | + | chr6_4:66725382-66725401 | Msa0993700:intron | 15.0% |
| !!! | ATTTTAATGTAACAGTATAT+GGG | + | chr6_4:66725383-66725402 | Msa0993700:intron | 15.0% |
| !! | ATATTTCAACTATGAATAAA+TGG | + | chr6_4:66725414-66725433 | Msa0993700:intron | 15.0% |
| !!! | TCTTTTAAGTATATATGTAT+AGG | - | chr6_4:66726312-66726331 | None:intergenic | 15.0% |
| !! | ATATATACTTAAAAGAAGTT+GGG | + | chr6_4:66726316-66726335 | Msa0993700:intron | 15.0% |
| !! | AATAGTAATAAAATATCCAT+AGG | - | chr6_4:66726367-66726386 | None:intergenic | 15.0% |
| !! | TGTATTTATCTTTCAAAATA+TGG | + | chr6_4:66726489-66726508 | Msa0993700:intron | 15.0% |
| !! | CATCTTTATAAGAAATATTT+AGG | + | chr6_4:66726822-66726841 | Msa0993700:intron | 15.0% |
| !!! | GGTTTTTTAAATCTAAATAT+AGG | + | chr6_4:66726843-66726862 | Msa0993700:intron | 15.0% |
| !! | TAATGTTACAACTATTGAAT+TGG | + | chr6_4:66724343-66724362 | Msa0993700:CDS | 20.0% |
| !!! | CATTTTCAAGAATAATTTTG+TGG | - | chr6_4:66724644-66724663 | None:intergenic | 20.0% |
| !! | AAAGAATGAAGTAAAAACAA+CGG | - | chr6_4:66725447-66725466 | None:intergenic | 20.0% |
| !! | ATAAACTATACATCAAATAG+AGG | - | chr6_4:66725500-66725519 | None:intergenic | 20.0% |
| !! | TGTTCTTAACTTTATAATCT+AGG | + | chr6_4:66725552-66725571 | Msa0993700:intron | 20.0% |
| !! | GTTCTTAACTTTATAATCTA+GGG | + | chr6_4:66725553-66725572 | Msa0993700:intron | 20.0% |
| !!! | AAAAAATTATTGTTGGTGTT+CGG | - | chr6_4:66726127-66726146 | None:intergenic | 20.0% |
| !! | CATATATACTTAAAAGAAGT+TGG | + | chr6_4:66726315-66726334 | Msa0993700:intron | 20.0% |
| !! | TATATACTTAAAAGAAGTTG+GGG | + | chr6_4:66726317-66726336 | Msa0993700:intron | 20.0% |
| !! | AAACTAAACTATTCTGTATA+TGG | - | chr6_4:66726399-66726418 | None:intergenic | 20.0% |
| !! | ATATACAGAATAGTTTAGTT+TGG | + | chr6_4:66726398-66726417 | Msa0993700:intron | 20.0% |
| !! | TTTATCTTTCAAAATATGGA+TGG | + | chr6_4:66726493-66726512 | Msa0993700:intron | 20.0% |
| !! | AAAAAACTTTCACAATTGAA+CGG | + | chr6_4:66726591-66726610 | Msa0993700:intron | 20.0% |
| !!! | ATCGTGCTATTTTTTTTTTT+GGG | - | chr6_4:66726643-66726662 | None:intergenic | 20.0% |
| !!! | AATCGTGCTATTTTTTTTTT+TGG | - | chr6_4:66726644-66726663 | None:intergenic | 20.0% |
| !!! | AAGTAGTTTTATACTAATGT+GGG | + | chr6_4:66726948-66726967 | Msa0993700:intron | 20.0% |
| !! | TAGTTGAACAATAAAAAAGA+GGG | - | chr6_4:66726990-66727009 | None:intergenic | 20.0% |
| !! | TTAGTTGAACAATAAAAAAG+AGG | - | chr6_4:66726991-66727010 | None:intergenic | 20.0% |
| !!! | AAAATTTAGCCAAATGTTTT+TGG | + | chr6_4:66727150-66727169 | Msa0993700:intron | 20.0% |
| !!! | TTTTTAGCCATAGTATAATT+GGG | + | chr6_4:66727197-66727216 | Msa0993700:intron | 20.0% |
| !! | CTTAAACTTTCCATTAATAA+TGG | - | chr6_4:66727289-66727308 | None:intergenic | 20.0% |
| !! | TTTAACAACGATTGTTAATT+AGG | + | chr6_4:66727339-66727358 | Msa0993700:intron | 20.0% |
| ! | GCACAATTAACACAAATTAT+AGG | - | chr6_4:66724242-66724261 | None:intergenic | 25.0% |
| !!! | TAGAAGGATTAGTTCTTTAA+TGG | + | chr6_4:66724849-66724868 | Msa0993700:CDS | 25.0% |
| ! | ATTAACATATATACCTCAGA+TGG | - | chr6_4:66724970-66724989 | None:intergenic | 25.0% |
| ! | AAATCCTACACATTTCAATT+TGG | - | chr6_4:66725074-66725093 | None:intergenic | 25.0% |
| ! | AGTTCAGCATCTTTATAAAT+TGG | - | chr6_4:66725128-66725147 | None:intergenic | 25.0% |
| ! | CAAAAGTGACAATTTGATAA+CGG | + | chr6_4:66725214-66725233 | Msa0993700:CDS | 25.0% |
| ! | TGTTTCAACTTTCAACATAA+AGG | + | chr6_4:66725467-66725486 | Msa0993700:intron | 25.0% |
| ! | CAAAAGATAGACTTGTAATA+TGG | - | chr6_4:66725737-66725756 | None:intergenic | 25.0% |
| ! | TTGAGAGTAACTTATATTGT+TGG | + | chr6_4:66725977-66725996 | Msa0993700:intron | 25.0% |
| ! | AGCATATTGAAAGATGAATT+TGG | - | chr6_4:66726039-66726058 | None:intergenic | 25.0% |
| !!! | ACCAACAATAATTTTTTTCG+AGG | + | chr6_4:66726130-66726149 | Msa0993700:intron | 25.0% |
| ! | TCCTCGAAAAAAATTATTGT+TGG | - | chr6_4:66726134-66726153 | None:intergenic | 25.0% |
| !! | TTCATTTTATTCACTTTGCA+CGG | - | chr6_4:66726180-66726199 | None:intergenic | 25.0% |
| ! | AAAGTGAATAAAATGAAGAG+CGG | + | chr6_4:66726183-66726202 | Msa0993700:intron | 25.0% |
| !!! | TAGGCAATTTAGTTTTGAAA+GGG | - | chr6_4:66726223-66726242 | None:intergenic | 25.0% |
| !!! | TTAGGCAATTTAGTTTTGAA+AGG | - | chr6_4:66726224-66726243 | None:intergenic | 25.0% |
| !!! | TTATTCTCTAGCTTCATTTT+AGG | - | chr6_4:66726242-66726261 | None:intergenic | 25.0% |
| ! | AATGGTATGTTTATGTGAAA+TGG | + | chr6_4:66726271-66726290 | Msa0993700:intron | 25.0% |
| ! | ATGGTATGTTTATGTGAAAT+GGG | + | chr6_4:66726272-66726291 | Msa0993700:intron | 25.0% |
| ! | ATATACTTAAAAGAAGTTGG+GGG | + | chr6_4:66726318-66726337 | Msa0993700:intron | 25.0% |
| !! | TAATTTGTAAGTGTATGTTG+AGG | - | chr6_4:66726730-66726749 | None:intergenic | 25.0% |
| !!! | CAAGTAGTTTTATACTAATG+TGG | + | chr6_4:66726947-66726966 | Msa0993700:intron | 25.0% |
| !!! | AGTAGTTTTATACTAATGTG+GGG | + | chr6_4:66726949-66726968 | Msa0993700:intron | 25.0% |
| !!! | ATGATTCCTTCTTTTTCATA+TGG | + | chr6_4:66727020-66727039 | Msa0993700:intron | 25.0% |
| !!! | TGATTCCTTCTTTTTCATAT+GGG | + | chr6_4:66727021-66727040 | Msa0993700:intron | 25.0% |
| !!! | GTTTTTAGCCATAGTATAAT+TGG | + | chr6_4:66727196-66727215 | Msa0993700:intron | 25.0% |
| !! | TTTTAGCCATAGTATAATTG+GGG | + | chr6_4:66727198-66727217 | Msa0993700:intron | 25.0% |
| ! | TTATTAAACAGCCATAAAGT+AGG | + | chr6_4:66727255-66727274 | Msa0993700:intron | 25.0% |
| ! | GGTTTAACAACCATTATTAA+TGG | + | chr6_4:66727276-66727295 | Msa0993700:intron | 25.0% |
| !! | GTCTTTGAAAACTAGAAATT+TGG | - | chr6_4:66727383-66727402 | None:intergenic | 25.0% |
| ! | AACATCTTCAAAATCAATGT+TGG | - | chr6_4:66727414-66727433 | None:intergenic | 25.0% |
| !!! | GATTTTGAAGATGTTTAAAC+AGG | + | chr6_4:66727419-66727438 | Msa0993700:intron | 25.0% |
| ATAACAAAAGAATGTGCACA+AGG | - | chr6_4:66724208-66724227 | None:intergenic | 30.0% | |
| ! | TGAACCATTGATGACATTTA+TGG | + | chr6_4:66724424-66724443 | Msa0993700:CDS | 30.0% |
| GATTCCATAAATGTCATCAA+TGG | - | chr6_4:66724431-66724450 | None:intergenic | 30.0% | |
| ! | ACAGAGTTTTTCTTCTTTGA+TGG | + | chr6_4:66724874-66724893 | Msa0993700:CDS | 30.0% |
| TGGTGATAATTGATACATCT+TGG | - | chr6_4:66724950-66724969 | None:intergenic | 30.0% | |
| AACTCCAAATTGAAATGTGT+AGG | + | chr6_4:66725067-66725086 | Msa0993700:intron | 30.0% | |
| GCATCTTTATAAATTGGTAC+AGG | - | chr6_4:66725122-66725141 | None:intergenic | 30.0% | |
| ACAGTTACCAATGATAGAAA+TGG | + | chr6_4:66725164-66725183 | Msa0993700:CDS | 30.0% | |
| TTACCAATGATAGAAATGGA+AGG | + | chr6_4:66725168-66725187 | Msa0993700:CDS | 30.0% | |
| TACCAATGATAGAAATGGAA+GGG | + | chr6_4:66725169-66725188 | Msa0993700:CDS | 30.0% | |
| TTTACAAATGTGGATGATTG+AGG | + | chr6_4:66725241-66725260 | Msa0993700:CDS | 30.0% | |
| TTACAAATGTGGATGATTGA+GGG | + | chr6_4:66725242-66725261 | Msa0993700:CDS | 30.0% | |
| !! | CTTTTGTGCAATCTTTAGAA+GGG | - | chr6_4:66725351-66725370 | None:intergenic | 30.0% |
| ! | ACTTTTGTGCAATCTTTAGA+AGG | - | chr6_4:66725352-66725371 | None:intergenic | 30.0% |
| ! | TTTATAATCTAGGGCTTGTT+AGG | + | chr6_4:66725562-66725581 | Msa0993700:intron | 30.0% |
| !! | TTATAATCTAGGGCTTGTTA+GGG | + | chr6_4:66725563-66725582 | Msa0993700:intron | 30.0% |
| AGATAGACTTGTAATATGGA+AGG | - | chr6_4:66725733-66725752 | None:intergenic | 30.0% | |
| ACAGTTATTACATCTCAAAC+CGG | - | chr6_4:66725852-66725871 | None:intergenic | 30.0% | |
| TTGAGATGTAATAACTGTGT+TGG | + | chr6_4:66725854-66725873 | Msa0993700:intron | 30.0% | |
| ACTATTCTGTATATGGTCAA+TGG | - | chr6_4:66726392-66726411 | None:intergenic | 30.0% | |
| AAGCCAAATCTTAATCGTAA+CGG | - | chr6_4:66726424-66726443 | None:intergenic | 30.0% | |
| !! | GATTCCTTCTTTTTCATATG+GGG | + | chr6_4:66727022-66727041 | Msa0993700:intron | 30.0% |
| TGGTTGTTAAACCTACTTTA+TGG | - | chr6_4:66727269-66727288 | None:intergenic | 30.0% | |
| TCGTTGTTAAACCTACTTTA+TGG | - | chr6_4:66727330-66727349 | None:intergenic | 30.0% | |
| GTTACAACTATTGAATTGGC+TGG | + | chr6_4:66724347-66724366 | Msa0993700:CDS | 35.0% | |
| TTCAGGTATCAATCCAATTC+AGG | + | chr6_4:66724370-66724389 | Msa0993700:intron | 35.0% | |
| TGAATCTCTTGTACCTGAAT+TGG | - | chr6_4:66724386-66724405 | None:intergenic | 35.0% | |
| !!! | CTGCAACTGAGATTTTTTGA+GGG | - | chr6_4:66724517-66724536 | None:intergenic | 35.0% |
| !!! | ACTGCAACTGAGATTTTTTG+AGG | - | chr6_4:66724518-66724537 | None:intergenic | 35.0% |
| ATCTTGGATGCCATGAATTT+GGG | - | chr6_4:66724934-66724953 | None:intergenic | 35.0% | |
| GTATCAATTATCACCATCTG+AGG | + | chr6_4:66724954-66724973 | Msa0993700:CDS | 35.0% | |
| TACCCTTCCATTTCTATCAT+TGG | - | chr6_4:66725174-66725193 | None:intergenic | 35.0% | |
| !! | AAGTGACAATTTGATAACGG+AGG | + | chr6_4:66725217-66725236 | Msa0993700:CDS | 35.0% |
| TAACGGAGGATTTACAAATG+TGG | + | chr6_4:66725231-66725250 | Msa0993700:CDS | 35.0% | |
| TAATGTAACAGTATATGGGC+TGG | + | chr6_4:66725387-66725406 | Msa0993700:intron | 35.0% | |
| TAAGAAAGGAGAAGACATGA+AGG | - | chr6_4:66725663-66725682 | None:intergenic | 35.0% | |
| ! | ATTTGGTAGCACAATAGAGA+GGG | - | chr6_4:66725686-66725705 | None:intergenic | 35.0% |
| AGACTTGTAATATGGAAGGT+TGG | - | chr6_4:66725729-66725748 | None:intergenic | 35.0% | |
| ! | AAAATACAGGGTTTTCATGG+TGG | - | chr6_4:66725813-66725832 | None:intergenic | 35.0% |
| ! | ACCATGAAAACCCTGTATTT+TGG | + | chr6_4:66725812-66725831 | Msa0993700:intron | 35.0% |
| ! | ACCAAAATACAGGGTTTTCA+TGG | - | chr6_4:66725816-66725835 | None:intergenic | 35.0% |
| ! | TGATGGAGTACCAAAATACA+GGG | - | chr6_4:66725825-66725844 | None:intergenic | 35.0% |
| CAGTTATTACATCTCAAACC+GGG | - | chr6_4:66725851-66725870 | None:intergenic | 35.0% | |
| ! | GCAAATGACTTTTCAACATG+TGG | + | chr6_4:66726061-66726080 | Msa0993700:intron | 35.0% |
| TGTTTATGTGAAATGGGATG+TGG | + | chr6_4:66726278-66726297 | Msa0993700:intron | 35.0% | |
| !! | AGTTGGGGGTGTTTATAATA+AGG | + | chr6_4:66726332-66726351 | Msa0993700:intron | 35.0% |
| !! | GTTGGGGGTGTTTATAATAA+GGG | + | chr6_4:66726333-66726352 | Msa0993700:intron | 35.0% |
| !! | TTGGGGGTGTTTATAATAAG+GGG | + | chr6_4:66726334-66726353 | Msa0993700:intron | 35.0% |
| ! | TAGCGAGAGTACAATCAAAT+TGG | - | chr6_4:66726534-66726553 | None:intergenic | 35.0% |
| ! | TGATTGTACTCTCGCTATTT+TGG | + | chr6_4:66726537-66726556 | Msa0993700:intron | 35.0% |
| TCTCACTCTAATGACATCAA+TGG | + | chr6_4:66726756-66726775 | Msa0993700:intron | 35.0% | |
| AGCTCGAATTCACTACATAT+AGG | + | chr6_4:66726780-66726799 | Msa0993700:intron | 35.0% | |
| ! | TTTCGTTCAGTCAGTTTTTC+TGG | + | chr6_4:66726896-66726915 | Msa0993700:intron | 35.0% |
| !! | AGTTTTTCTGGCATCTTTTG+AGG | + | chr6_4:66726908-66726927 | Msa0993700:intron | 35.0% |
| !!! | TTTAGCCAAATGTTTTTGGC+TGG | + | chr6_4:66727154-66727173 | Msa0993700:intron | 35.0% |
| TTTAGCCAGCCAAAAACATT+TGG | - | chr6_4:66727162-66727181 | None:intergenic | 35.0% | |
| ! | TGGCTGGCTAAATAACTTTA+TGG | + | chr6_4:66727170-66727189 | Msa0993700:intron | 35.0% |
| TGGCTAAATAACTTTATGGC+TGG | + | chr6_4:66727174-66727193 | Msa0993700:intron | 35.0% | |
| AGTGTACCCCAATTATACTA+TGG | - | chr6_4:66727207-66727226 | None:intergenic | 35.0% | |
| TATTTAGCCAGCCATAAAGT+AGG | + | chr6_4:66727316-66727335 | Msa0993700:intron | 35.0% | |
| TGTTAAACCTACTTTATGGC+TGG | - | chr6_4:66727265-66727284 | None:intergenic | 35.0% | |
| !! | AAGCACTTTGTGTTGATTCA+TGG | + | chr6_4:66727444-66727463 | Msa0993700:CDS | 35.0% |
| ! | TTGCATCTGCTTTGGATAAT+TGG | - | chr6_4:66727570-66727589 | None:intergenic | 35.0% |
| !! | GCAAACTTTGTGCTGATTCA+TGG | + | chr6_4:66724260-66724279 | Msa0993700:CDS | 40.0% |
| !! | AACTTTGTGCTGATTCATGG+TGG | + | chr6_4:66724263-66724282 | Msa0993700:CDS | 40.0% |
| ! | ACTATTGAATTGGCTGGTTC+AGG | + | chr6_4:66724353-66724372 | Msa0993700:intron | 40.0% |
| TATGGAATCTCTTCCTCCAA+AGG | + | chr6_4:66724442-66724461 | Msa0993700:CDS | 40.0% | |
| ATCTCTTCCTCCAAAGGAAA+AGG | + | chr6_4:66724448-66724467 | Msa0993700:CDS | 40.0% | |
| ! | AGAATCACCTTTTCCTTTGG+AGG | - | chr6_4:66724458-66724477 | None:intergenic | 40.0% |
| ! | CCAAGAATCACCTTTTCCTT+TGG | - | chr6_4:66724461-66724480 | None:intergenic | 40.0% |
| CCAAAGGAAAAGGTGATTCT+TGG | + | chr6_4:66724458-66724477 | Msa0993700:CDS | 40.0% | |
| AAGGAAAAGGTGATTCTTGG+TGG | + | chr6_4:66724461-66724480 | Msa0993700:CDS | 40.0% | |
| AGGAAAAGGTGATTCTTGGT+GGG | + | chr6_4:66724462-66724481 | Msa0993700:CDS | 40.0% | |
| ! | CTTTTCCATAGCAACAGATG+TGG | - | chr6_4:66724492-66724511 | None:intergenic | 40.0% |
| ATACCCAGTTGTTCTTCAAG+AGG | + | chr6_4:66724574-66724593 | Msa0993700:CDS | 40.0% | |
| GTACCTCTTGAAGAACAACT+GGG | - | chr6_4:66724580-66724599 | None:intergenic | 40.0% | |
| TGTACCTCTTGAAGAACAAC+TGG | - | chr6_4:66724581-66724600 | None:intergenic | 40.0% | |
| ATTGGTTGGACCCAAATTCA+TGG | + | chr6_4:66724921-66724940 | Msa0993700:CDS | 40.0% | |
| CATCTTGGATGCCATGAATT+TGG | - | chr6_4:66724935-66724954 | None:intergenic | 40.0% | |
| AATTGGTACAGGTCTCACTA+GGG | - | chr6_4:66725111-66725130 | None:intergenic | 40.0% | |
| AAATTGGTACAGGTCTCACT+AGG | - | chr6_4:66725112-66725131 | None:intergenic | 40.0% | |
| ATCACTTCCACCTTCTCAAA+TGG | - | chr6_4:66725275-66725294 | None:intergenic | 40.0% | |
| GATAGAGGATTCTGATCACA+TGG | + | chr6_4:66725292-66725311 | Msa0993700:CDS | 40.0% | |
| ! | TTGTGCAATCTTTAGAAGGG+TGG | - | chr6_4:66725348-66725367 | None:intergenic | 40.0% |
| !! | AGATGACATAGTGGTTTGGT+TGG | - | chr6_4:66725640-66725659 | None:intergenic | 40.0% |
| AAGGAGATGACATAGTGGTT+TGG | - | chr6_4:66725644-66725663 | None:intergenic | 40.0% | |
| ACATGAAGGAGATGACATAG+TGG | - | chr6_4:66725649-66725668 | None:intergenic | 40.0% | |
| CACAATAGAGAGGGTAAGAA+AGG | - | chr6_4:66725677-66725696 | None:intergenic | 40.0% | |
| ! | GATTTGGTAGCACAATAGAG+AGG | - | chr6_4:66725687-66725706 | None:intergenic | 40.0% |
| CTTGTAATATGGAAGGTTGG+TGG | - | chr6_4:66725726-66725745 | None:intergenic | 40.0% | |
| !! | TTCATGGTGGCTTTTTAGGA+TGG | - | chr6_4:66725800-66725819 | None:intergenic | 40.0% |
| ! | GGTTTTCATGGTGGCTTTTT+AGG | - | chr6_4:66725804-66725823 | None:intergenic | 40.0% |
| ! | GTGATGGAGTACCAAAATAC+AGG | - | chr6_4:66725826-66725845 | None:intergenic | 40.0% |
| !! | TGGGGGTGTTTATAATAAGG+GGG | + | chr6_4:66726335-66726354 | Msa0993700:intron | 40.0% |
| AATAAGGGGGTTAAAGCCTA+TGG | + | chr6_4:66726348-66726367 | Msa0993700:intron | 40.0% | |
| TGGCCGTTACGATTAAGATT+TGG | + | chr6_4:66726418-66726437 | Msa0993700:intron | 40.0% | |
| TTGGCCCCATATGAAAAAGA+AGG | - | chr6_4:66727029-66727048 | None:intergenic | 40.0% | |
| !! | CACTTTGTGTTGATTCATGG+AGG | + | chr6_4:66727447-66727466 | Msa0993700:CDS | 40.0% |
| GCAACTGAACTAAAATCAGC+TGG | + | chr6_4:66727501-66727520 | Msa0993700:CDS | 40.0% | |
| TAAAGTCACAGCACTAGACA+TGG | + | chr6_4:66727527-66727546 | Msa0993700:CDS | 40.0% | |
| TGAACTTCTTGCATCTGCTT+TGG | - | chr6_4:66727578-66727597 | None:intergenic | 40.0% | |
| TATACCAACACCATGCACCA+TGG | - | chr6_4:66724292-66724311 | None:intergenic | 45.0% | |
| !! | TGGTGCATGGTGTTGGTATA+AGG | + | chr6_4:66724292-66724311 | Msa0993700:CDS | 45.0% |
| !! | TGCATGGTGTTGGTATAAGG+TGG | + | chr6_4:66724295-66724314 | Msa0993700:CDS | 45.0% |
| GCAACTATGCTGAAATCTGC+TGG | + | chr6_4:66724317-66724336 | Msa0993700:CDS | 45.0% | |
| GGAAAAGGTGATTCTTGGTG+GGG | + | chr6_4:66724463-66724482 | Msa0993700:CDS | 45.0% | |
| GAAGAACAACTGGGTATGAG+AGG | - | chr6_4:66724571-66724590 | None:intergenic | 45.0% | |
| !! | CCTTCTAGCTTGCTACATGA+TGG | - | chr6_4:66724836-66724855 | None:intergenic | 45.0% |
| CCATCATGTAGCAAGCTAGA+AGG | + | chr6_4:66724833-66724852 | Msa0993700:intron | 45.0% | |
| ! | CTAGCAGTTGCAGGTTTGTT+GGG | - | chr6_4:66724901-66724920 | None:intergenic | 45.0% |
| TCTAGCAGTTGCAGGTTTGT+TGG | - | chr6_4:66724902-66724921 | None:intergenic | 45.0% | |
| CAAACCTGCAACTGCTAGAT+TGG | + | chr6_4:66724903-66724922 | Msa0993700:CDS | 45.0% | |
| TCTCACTAGGGACAATGCAA+GGG | - | chr6_4:66725099-66725118 | None:intergenic | 45.0% | |
| ATGTGGATGATTGAGGGAAG+TGG | + | chr6_4:66725248-66725267 | Msa0993700:CDS | 45.0% | |
| AAGTGGTCCATTTGAGAAGG+TGG | + | chr6_4:66725265-66725284 | Msa0993700:CDS | 45.0% | |
| TGAGAAGGTGGAAGTGATAG+AGG | + | chr6_4:66725277-66725296 | Msa0993700:CDS | 45.0% | |
| AGGGTGGAACTAAGCTTCTT+TGG | - | chr6_4:66725332-66725351 | None:intergenic | 45.0% | |
| !!! | TCTAGGGCTTGTTAGGGTTT+TGG | + | chr6_4:66725569-66725588 | Msa0993700:intron | 45.0% |
| TTGAGGGAGAGCTAGTGATT+TGG | - | chr6_4:66725703-66725722 | None:intergenic | 45.0% | |
| !! | TATGGAAGGTTGGTGGTTGA+GGG | - | chr6_4:66725719-66725738 | None:intergenic | 45.0% |
| !! | ATATGGAAGGTTGGTGGTTG+AGG | - | chr6_4:66725720-66725739 | None:intergenic | 45.0% |
| ATGGAGATCCTCTAACATGG+AGG | - | chr6_4:66725774-66725793 | None:intergenic | 45.0% | |
| CACATGGAGATCCTCTAACA+TGG | - | chr6_4:66725777-66725796 | None:intergenic | 45.0% | |
| !!! | TGGCTTTTTAGGATGGCACA+TGG | - | chr6_4:66725793-66725812 | None:intergenic | 45.0% |
| TTTGGTACTCCATCACTTCC+CGG | + | chr6_4:66725830-66725849 | Msa0993700:intron | 45.0% | |
| !! | TTGATTCATGGAGGCATCCA+TGG | + | chr6_4:66727456-66727475 | Msa0993700:CDS | 45.0% |
| TATACCAACACCATGCACCA+TGG | - | chr6_4:66724292-66724311 | None:intergenic | 45.0% | |
| !! | TAAAAATAAAATAAAATGAT+TGG | - | chr6_4:66727048-66727067 | None:intergenic | 5.0% |
| ! | CTGATTCATGGTGGAAGCCA+TGG | + | chr6_4:66724272-66724291 | Msa0993700:CDS | 50.0% |
| GGTGTCCACATCTGTTGCTA+TGG | + | chr6_4:66724484-66724503 | Msa0993700:CDS | 50.0% | |
| CCAACCAATCTAGCAGTTGC+AGG | - | chr6_4:66724910-66724929 | None:intergenic | 50.0% | |
| CCTGCAACTGCTAGATTGGT+TGG | + | chr6_4:66724907-66724926 | Msa0993700:CDS | 50.0% | |
| GTCTCACTAGGGACAATGCA+AGG | - | chr6_4:66725100-66725119 | None:intergenic | 50.0% | |
| GGGAAGTGGTCCATTTGAGA+AGG | + | chr6_4:66725262-66725281 | Msa0993700:CDS | 50.0% | |
| ! | TCCTCTAACATGGAGGTGCA+AGG | - | chr6_4:66725767-66725786 | None:intergenic | 50.0% |
| CATCTCAAACCGGGAAGTGA+TGG | - | chr6_4:66725842-66725861 | None:intergenic | 50.0% | |
| ! | ATGGTGGAAGCCATGGTGCA+TGG | + | chr6_4:66724279-66724298 | Msa0993700:CDS | 55.0% |
| GAAGCCATGGTGCATGGTGT+TGG | + | chr6_4:66724285-66724304 | Msa0993700:CDS | 55.0% | |
| GCCTTGCACCTCCATGTTAG+AGG | + | chr6_4:66725763-66725782 | Msa0993700:intron | 55.0% | |
| !! | ATGGAGGCATCCATGGTGCA+TGG | + | chr6_4:66727463-66727482 | Msa0993700:CDS | 55.0% |
| GCATCCATGGTGCATGGTGT+TGG | + | chr6_4:66727469-66727488 | Msa0993700:CDS | 55.0% | |
| GCACTAGACATGGCTGCTTG+TGG | + | chr6_4:66727537-66727556 | Msa0993700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 66724185 | 66727626 | 66724185 | ID=Msa0993700;Name=Msa0993700 |
| chr6_4 | mRNA | 66724185 | 66727626 | 66724185 | ID=Msa0993700-mRNA-1;Parent=Msa0993700;Name=Msa0993700-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0.5|0.2|5|0|315 |
| chr6_4 | exon | 66724185 | 66724368 | 66724185 | ID=Msa0993700-mRNA-1:exon:12443;Parent=Msa0993700-mRNA-1 |
| chr6_4 | exon | 66724375 | 66724595 | 66724375 | ID=Msa0993700-mRNA-1:exon:12444;Parent=Msa0993700-mRNA-1 |
| chr6_4 | exon | 66724844 | 66724975 | 66724844 | ID=Msa0993700-mRNA-1:exon:12445;Parent=Msa0993700-mRNA-1 |
| chr6_4 | exon | 66725089 | 66725313 | 66725089 | ID=Msa0993700-mRNA-1:exon:12446;Parent=Msa0993700-mRNA-1 |
| chr6_4 | exon | 66727441 | 66727626 | 66727441 | ID=Msa0993700-mRNA-1:exon:12447;Parent=Msa0993700-mRNA-1 |
| chr6_4 | CDS | 66724185 | 66724368 | 66724185 | ID=Msa0993700-mRNA-1:cds;Parent=Msa0993700-mRNA-1 |
| chr6_4 | CDS | 66724375 | 66724595 | 66724375 | ID=Msa0993700-mRNA-1:cds;Parent=Msa0993700-mRNA-1 |
| chr6_4 | CDS | 66724844 | 66724975 | 66724844 | ID=Msa0993700-mRNA-1:cds;Parent=Msa0993700-mRNA-1 |
| chr6_4 | CDS | 66725089 | 66725313 | 66725089 | ID=Msa0993700-mRNA-1:cds;Parent=Msa0993700-mRNA-1 |
| chr6_4 | CDS | 66727441 | 66727626 | 66727441 | ID=Msa0993700-mRNA-1:cds;Parent=Msa0993700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
