Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1184170 | XP_013450544.1 | 84.615 | 130 | 17 | 2 | 336 | 464 | 859 | 986 | 3.56e-52 | 202 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1184170 | sp|F4HWY6|MYO11_ARATH | 61.832 | 131 | 48 | 1 | 335 | 465 | 862 | 990 | 7.91e-38 | 151 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0488800 | Msa1184170 | 0.808463 | 3.059186e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1184170 | MtrunA17_Chr7g0274361 | 98.095 | 105 | 2 | 0 | 360 | 464 | 863 | 967 | 6.62e-55 | 198 |
Msa1184170 | MtrunA17_Chr2g0291211 | 73.109 | 119 | 29 | 2 | 60 | 176 | 21 | 138 | 8.94e-46 | 167 |
Msa1184170 | MtrunA17_Chr4g0070771 | 60.163 | 123 | 48 | 1 | 343 | 464 | 864 | 986 | 1.98e-36 | 144 |
Msa1184170 | MtrunA17_Chr1g0190471 | 68.571 | 105 | 33 | 0 | 360 | 464 | 914 | 1018 | 9.33e-35 | 139 |
Msa1184170 | MtrunA17_Chr4g0008951 | 48.333 | 180 | 25 | 4 | 220 | 332 | 471 | 649 | 1.96e-34 | 137 |
Msa1184170 | MtrunA17_Chr2g0309291 | 61.765 | 102 | 37 | 1 | 356 | 457 | 877 | 976 | 4.45e-29 | 122 |
Msa1184170 | MtrunA17_Chr7g0239721 | 39.674 | 184 | 44 | 3 | 220 | 336 | 431 | 614 | 1.89e-27 | 116 |
Msa1184170 | MtrunA17_Chr1g0183001 | 48.819 | 127 | 60 | 3 | 341 | 467 | 867 | 988 | 4.12e-22 | 100 |
Msa1184170 | MtrunA17_Chr3g0112411 | 36.957 | 184 | 49 | 3 | 220 | 336 | 431 | 614 | 1.23e-21 | 98.6 |
Msa1184170 | MtrunA17_Chr7g0262581 | 48.031 | 127 | 61 | 3 | 341 | 467 | 866 | 987 | 3.57e-21 | 97.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1184170 | AT1G54560.1 | 61.832 | 131 | 48 | 1 | 335 | 465 | 862 | 990 | 8.04e-39 | 151 |
Msa1184170 | AT1G54560.2 | 61.832 | 131 | 48 | 1 | 335 | 465 | 859 | 987 | 9.85e-39 | 151 |
Msa1184170 | AT5G20490.3 | 58.871 | 124 | 50 | 1 | 343 | 465 | 798 | 921 | 2.62e-35 | 141 |
Msa1184170 | AT5G20490.2 | 58.871 | 124 | 50 | 1 | 343 | 465 | 864 | 987 | 3.02e-35 | 140 |
Msa1184170 | AT5G20490.1 | 58.871 | 124 | 50 | 1 | 343 | 465 | 863 | 986 | 3.22e-35 | 140 |
Msa1184170 | AT5G20470.1 | 61.818 | 110 | 42 | 0 | 356 | 465 | 97 | 206 | 2.49e-32 | 130 |
Msa1184170 | AT1G08730.1 | 56.923 | 130 | 54 | 1 | 335 | 464 | 867 | 994 | 1.93e-29 | 123 |
Msa1184170 | AT1G08730.2 | 56.923 | 130 | 54 | 1 | 335 | 464 | 859 | 986 | 2.02e-29 | 123 |
Msa1184170 | AT1G17580.1 | 51.852 | 135 | 61 | 3 | 334 | 467 | 854 | 985 | 3.95e-29 | 122 |
Msa1184170 | AT2G31900.4 | 54.098 | 122 | 47 | 3 | 360 | 473 | 881 | 1001 | 2.95e-28 | 119 |
Msa1184170 | AT2G31900.1 | 54.098 | 122 | 47 | 3 | 360 | 473 | 881 | 1001 | 2.95e-28 | 119 |
Msa1184170 | AT2G31900.2 | 54.098 | 122 | 47 | 3 | 360 | 473 | 881 | 1001 | 3.23e-28 | 119 |
Msa1184170 | AT2G31900.5 | 54.098 | 122 | 47 | 3 | 360 | 473 | 766 | 886 | 3.51e-28 | 119 |
Msa1184170 | AT2G31900.3 | 54.098 | 122 | 47 | 3 | 360 | 473 | 623 | 743 | 3.98e-28 | 119 |
Msa1184170 | AT3G55610.2 | 40.217 | 184 | 43 | 3 | 220 | 336 | 431 | 614 | 9.66e-27 | 114 |
Msa1184170 | AT1G04160.1 | 51.969 | 127 | 56 | 3 | 341 | 467 | 865 | 986 | 1.06e-26 | 115 |
Msa1184170 | AT1G04160.2 | 51.969 | 127 | 56 | 3 | 341 | 467 | 865 | 986 | 1.14e-26 | 115 |
Msa1184170 | AT3G55610.1 | 40.217 | 184 | 43 | 3 | 220 | 336 | 431 | 614 | 1.37e-26 | 114 |
Msa1184170 | AT2G39800.3 | 39.227 | 181 | 46 | 3 | 220 | 336 | 431 | 611 | 1.04e-25 | 111 |
Msa1184170 | AT5G43900.3 | 55.357 | 112 | 47 | 2 | 356 | 467 | 937 | 1045 | 1.05e-24 | 108 |
Msa1184170 | AT5G43900.1 | 55.357 | 112 | 47 | 2 | 356 | 467 | 877 | 985 | 1.06e-24 | 108 |
Msa1184170 | AT5G43900.2 | 55.357 | 112 | 47 | 2 | 356 | 467 | 934 | 1042 | 1.15e-24 | 108 |
Msa1184170 | AT2G39800.2 | 38.043 | 184 | 47 | 4 | 220 | 336 | 328 | 511 | 2.19e-23 | 103 |
Msa1184170 | AT2G39800.1 | 38.043 | 184 | 47 | 4 | 220 | 336 | 431 | 614 | 2.29e-23 | 104 |
Msa1184170 | AT2G39800.4 | 38.043 | 184 | 47 | 4 | 220 | 336 | 431 | 614 | 2.29e-23 | 104 |
Msa1184170 | AT4G28710.1 | 49.606 | 127 | 59 | 3 | 341 | 467 | 871 | 992 | 7.21e-23 | 103 |
Msa1184170 | AT2G44200.1 | 72.131 | 61 | 17 | 0 | 61 | 121 | 22 | 82 | 8.97e-18 | 86.3 |
Msa1184170 | AT2G20290.4 | 44.882 | 127 | 65 | 2 | 341 | 467 | 859 | 980 | 3.58e-15 | 79.3 |
Msa1184170 | AT2G20290.1 | 44.882 | 127 | 65 | 2 | 341 | 467 | 870 | 991 | 3.72e-15 | 79.3 |
Msa1184170 | AT2G20290.3 | 44.882 | 127 | 65 | 2 | 341 | 467 | 859 | 980 | 3.90e-15 | 79.0 |
Msa1184170 | AT2G20290.2 | 44.882 | 127 | 65 | 2 | 341 | 467 | 859 | 980 | 3.91e-15 | 79.0 |
Msa1184170 | AT4G33200.3 | 43.689 | 103 | 53 | 3 | 334 | 435 | 862 | 960 | 7.31e-12 | 68.6 |
Msa1184170 | AT4G33200.2 | 43.689 | 103 | 53 | 3 | 334 | 435 | 862 | 960 | 7.56e-12 | 68.6 |
Msa1184170 | AT4G33200.1 | 43.689 | 103 | 53 | 3 | 334 | 435 | 862 | 960 | 7.99e-12 | 68.6 |
Msa1184170 | AT4G33200.4 | 43.689 | 103 | 53 | 3 | 334 | 435 | 862 | 960 | 8.21e-12 | 68.6 |
Msa1184170 | AT1G04600.1 | 38.596 | 114 | 62 | 2 | 343 | 455 | 863 | 969 | 9.91e-12 | 68.2 |
Find 112 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGCCAACCTTGCCATTTC+TGG | 0.082081 | 8_1:-19772036 | None:intergenic |
AATTGGCGGGGTTTGGAATT+TGG | 0.121133 | 8_1:+19770262 | Msa1184170:CDS |
CGGAATGGCTTATTACTTAA+AGG | 0.197712 | 8_1:+19771028 | Msa1184170:CDS |
ATTGGCGGGGTTTGGAATTT+GGG | 0.209909 | 8_1:+19770263 | Msa1184170:CDS |
TACCTTTCTTCAGCCTTTCT+AGG | 0.223759 | 8_1:-19772082 | None:intergenic |
CGGCTTTCCAAACGTTAAAA+TGG | 0.244644 | 8_1:-19769316 | None:intergenic |
ACCTTCCTCTTCTGCTTCTA+AGG | 0.260807 | 8_1:+19769686 | Msa1184170:CDS |
GCATCGGTTGGATCGGATTT+AGG | 0.271226 | 8_1:-19769663 | None:intergenic |
ACAGTCAGTGGTAAACTTAT+TGG | 0.283272 | 8_1:+19771221 | Msa1184170:CDS |
TTCAACTCTTATGCAATTCA+TGG | 0.288852 | 8_1:+19773700 | Msa1184170:three_prime_UTR |
TAGCGAGTTTCGTCTTCTTC+AGG | 0.292067 | 8_1:+19769409 | Msa1184170:CDS |
AGCAGAAGTTGAGAGTTTAA+AGG | 0.297990 | 8_1:+19772666 | Msa1184170:CDS |
TGCTTTAGATTCTTCTAGAT+TGG | 0.299225 | 8_1:-19772467 | None:intergenic |
TTTAGCACGGCACTAGCTTT+TGG | 0.332476 | 8_1:-19771788 | None:intergenic |
CGTAAATATCATACTATGAT+AGG | 0.342206 | 8_1:+19773780 | Msa1184170:three_prime_UTR |
CAGTCAGTGGTAAACTTATT+GGG | 0.342857 | 8_1:+19771222 | Msa1184170:CDS |
ACCTGGGTCTCTTGAATAAC+AGG | 0.348834 | 8_1:-19772607 | None:intergenic |
CGGCGAGTGTGAGAGGTGAT+AGG | 0.361885 | 8_1:-19769247 | None:intergenic |
GTGTGGCCGCATTTGATCTT+CGG | 0.365281 | 8_1:-19771063 | None:intergenic |
CTTTAGGCTTCAAGAGAAAC+TGG | 0.373193 | 8_1:+19772169 | Msa1184170:intron |
TACGATTCGGGATTATCCTT+TGG | 0.373378 | 8_1:+19769603 | Msa1184170:CDS |
TGTGGCCGCATTTGATCTTC+GGG | 0.377586 | 8_1:-19771062 | None:intergenic |
CTCCTTTGCAAGCATGGAAG+TGG | 0.396423 | 8_1:-19772548 | None:intergenic |
CAGCCAACCTTGCCATTTCT+GGG | 0.398372 | 8_1:-19772035 | None:intergenic |
ATATTTACCTTGAGTAGATC+TGG | 0.406296 | 8_1:-19771269 | None:intergenic |
TTTGATTGTGTATATTCTAC+AGG | 0.409026 | 8_1:+19773813 | Msa1184170:three_prime_UTR |
AACCTTCACGTTGGAGTTCA+AGG | 0.410020 | 8_1:-19771501 | None:intergenic |
CGTCTTCTTCAGGGAAAGGC+TGG | 0.419475 | 8_1:+19769419 | Msa1184170:CDS |
CTATGTTAGTTACCCAGAAA+TGG | 0.430251 | 8_1:+19772023 | Msa1184170:CDS |
AACAGGAGGTGCTTCTTCAA+TGG | 0.434920 | 8_1:-19772590 | None:intergenic |
CAGGGTTTCGTTTGGTGTGT+GGG | 0.447001 | 8_1:+19773569 | Msa1184170:intron |
TTCTTGCTCCTTTGCAAGCA+TGG | 0.447770 | 8_1:-19772554 | None:intergenic |
TGCATAAGAGTTGAAATGCT+TGG | 0.449626 | 8_1:-19773692 | None:intergenic |
TTTCTTCAGCCTTTCTAGGT+TGG | 0.449763 | 8_1:-19772078 | None:intergenic |
TAAAACATCTGAAGGTTTCA+AGG | 0.450452 | 8_1:+19769626 | Msa1184170:CDS |
CTTTGCTCTGCATATCCTGC+AGG | 0.464178 | 8_1:-19772516 | None:intergenic |
GGTTGTAATTTCAGCGATAC+CGG | 0.465623 | 8_1:+19771196 | Msa1184170:intron |
ATCATTCTTCCAACCTAGAA+AGG | 0.471188 | 8_1:+19772069 | Msa1184170:CDS |
AGTTTACCACTGACTGTATC+CGG | 0.476556 | 8_1:-19771215 | None:intergenic |
AGCGAGTTTCGTCTTCTTCA+GGG | 0.479075 | 8_1:+19769410 | Msa1184170:CDS |
TTATGCAATTCATGGTTACA+TGG | 0.479966 | 8_1:+19773708 | Msa1184170:three_prime_UTR |
GTTTCGTCTTCTTCAGGGAA+AGG | 0.489572 | 8_1:+19769415 | Msa1184170:CDS |
TCTGGGTAACTAACATAGAA+TGG | 0.491015 | 8_1:-19772018 | None:intergenic |
GTTCTGGTGTGACAAATTGC+AGG | 0.492018 | 8_1:+19770218 | Msa1184170:CDS |
TGAAATTGCAGGGTTTCGTT+TGG | 0.494240 | 8_1:+19773561 | Msa1184170:intron |
TCCTTTGGTAAAACATCTGA+AGG | 0.503657 | 8_1:+19769618 | Msa1184170:CDS |
GTATTGCAGCTGCAGATTAG+TGG | 0.509159 | 8_1:+19773626 | Msa1184170:CDS |
TTTATTTGATTGCAGTCACC+AGG | 0.510866 | 8_1:+19769563 | Msa1184170:intron |
TTACCCAGAAATGGCAAGGT+TGG | 0.511235 | 8_1:+19772032 | Msa1184170:CDS |
CTTGCAGATGTTCAAATGTA+TGG | 0.512027 | 8_1:+19771761 | Msa1184170:intron |
ATAGGTTGGACAACTGAGCC+TGG | 0.516815 | 8_1:+19769821 | Msa1184170:intron |
GTGTGTCTTCAACAATAACC+TGG | 0.522981 | 8_1:-19772624 | None:intergenic |
AAACGGTGAGTGAGTGTTCG+AGG | 0.524336 | 8_1:-19769199 | None:intergenic |
TGTTGCTTTGGAATGTTTGG+CGG | 0.526887 | 8_1:+19770344 | Msa1184170:CDS |
ACATACCTTAGAAGCAGAAG+AGG | 0.529706 | 8_1:-19769691 | None:intergenic |
TATCATACTATGATAGGCTA+AGG | 0.530076 | 8_1:+19773786 | Msa1184170:three_prime_UTR |
CTTATTACTTAAAGGAGGAA+AGG | 0.531505 | 8_1:+19771036 | Msa1184170:CDS |
AATGGTGAGGGGTGAAAAGA+CGG | 0.531998 | 8_1:-19769298 | None:intergenic |
TTGCAGTCACCAGGAGAGGT+TGG | 0.533295 | 8_1:+19769572 | Msa1184170:intron |
TTCTAGGTTGGAAGAATGAT+CGG | 0.533680 | 8_1:-19772066 | None:intergenic |
GAAGAGGAAGGTGCATCGGT+TGG | 0.537194 | 8_1:-19769675 | None:intergenic |
TCCAAACGTTAAAATGGTGA+GGG | 0.538195 | 8_1:-19769310 | None:intergenic |
GGCGAGTGTGAGAGGTGATA+GGG | 0.538963 | 8_1:-19769246 | None:intergenic |
AACCTAGAAAGGCTGAAGAA+AGG | 0.540687 | 8_1:+19772080 | Msa1184170:CDS |
AGCAGAAGAGGAAGGTGCAT+CGG | 0.541174 | 8_1:-19769679 | None:intergenic |
TTCCAAACGTTAAAATGGTG+AGG | 0.547112 | 8_1:-19769311 | None:intergenic |
TGAAATGCTTGGATCGCTAT+CGG | 0.548124 | 8_1:-19773681 | None:intergenic |
GCAGGGTTTCGTTTGGTGTG+TGG | 0.549581 | 8_1:+19773568 | Msa1184170:intron |
CGCTTCAGCAATATTTAGCA+CGG | 0.550469 | 8_1:-19771801 | None:intergenic |
TAACTACATCTAGTATCTCC+AGG | 0.550832 | 8_1:-19769839 | None:intergenic |
GTTGCTTTGGAATGTTTGGC+GGG | 0.555896 | 8_1:+19770345 | Msa1184170:CDS |
GGAAGGTGCATCGGTTGGAT+CGG | 0.561720 | 8_1:-19769670 | None:intergenic |
ATCCTTGAACTCCAACGTGA+AGG | 0.565086 | 8_1:+19771499 | Msa1184170:CDS |
GCTGTGAAACGATGGTGAAA+CGG | 0.574161 | 8_1:-19769216 | None:intergenic |
ATTGGCAATTCGAAGCGGAA+TGG | 0.575491 | 8_1:+19771013 | Msa1184170:CDS |
AGACTCGAAAACTGAATCGC+AGG | 0.579247 | 8_1:-19770300 | None:intergenic |
AACGGTGAGTGAGTGTTCGA+GGG | 0.580528 | 8_1:-19769198 | None:intergenic |
TCCTGTTATTCAAGAGACCC+AGG | 0.583194 | 8_1:+19772606 | Msa1184170:CDS |
CACAAGGATCTGTCATGTAA+TGG | 0.583937 | 8_1:+19771460 | Msa1184170:CDS |
TGGTGCACTTAAAGAAGCAA+AGG | 0.584874 | 8_1:+19772189 | Msa1184170:CDS |
AAAACTGCAGAACTCCCTGC+AGG | 0.585169 | 8_1:+19772501 | Msa1184170:CDS |
AACCACTTCCATGCTTGCAA+AGG | 0.589102 | 8_1:+19772546 | Msa1184170:CDS |
TTGATTGCAGTCACCAGGAG+AGG | 0.592164 | 8_1:+19769568 | Msa1184170:intron |
GAATTAATAGATAACAGCAT+TGG | 0.593270 | 8_1:+19770995 | Msa1184170:intron |
AATGGCTTATTACTTAAAGG+AGG | 0.594695 | 8_1:+19771031 | Msa1184170:CDS |
AAAACGACGGCGAGTGTGAG+AGG | 0.595341 | 8_1:-19769254 | None:intergenic |
TTGCACAGTTGAAATTGTAG+AGG | 0.600256 | 8_1:+19771856 | Msa1184170:CDS |
TTAGTTACCCAGAAATGGCA+AGG | 0.602241 | 8_1:+19772028 | Msa1184170:CDS |
ATCAAATGCGGCCACACACA+AGG | 0.609948 | 8_1:+19771069 | Msa1184170:CDS |
TATTGTTGAAGACACACAGA+AGG | 0.615421 | 8_1:+19772630 | Msa1184170:CDS |
GGAGACTCTTCTTGTACACA+AGG | 0.627269 | 8_1:+19771444 | Msa1184170:intron |
GGTGAGTCTGAGAGGTGAGA+CGG | 0.632273 | 8_1:-19769277 | None:intergenic |
ACCTTAGAAGCAGAAGAGGA+AGG | 0.633895 | 8_1:-19769687 | None:intergenic |
GAAAAGACGGTGAGTCTGAG+AGG | 0.634974 | 8_1:-19769285 | None:intergenic |
TTTGCTCTGCATATCCTGCA+GGG | 0.636069 | 8_1:-19772515 | None:intergenic |
TGAAATTCCAGATCTACTCA+AGG | 0.642854 | 8_1:+19771262 | Msa1184170:CDS |
CCAAACGTTAAAATGGTGAG+GGG | 0.649730 | 8_1:-19769309 | None:intergenic |
TGTGTCTTCAACAATAACCT+GGG | 0.649976 | 8_1:-19772623 | None:intergenic |
AAATAGGTAAACCTTGTGTG+TGG | 0.652655 | 8_1:-19771080 | None:intergenic |
AACGAGTGGAGGAACTCACA+TGG | 0.660298 | 8_1:+19772224 | Msa1184170:CDS |
AAGGATCTGTCATGTAATGG+TGG | 0.660536 | 8_1:+19771463 | Msa1184170:CDS |
GCAGATGTTCAAATGTATGG+TGG | 0.661578 | 8_1:+19771764 | Msa1184170:intron |
GAAAACGAGCTGTGAAACGA+TGG | 0.664401 | 8_1:-19769224 | None:intergenic |
ACGGTGAGTGAGTGTTCGAG+GGG | 0.668456 | 8_1:-19769197 | None:intergenic |
GTGAGGCCAAACCTTCACGT+TGG | 0.680539 | 8_1:-19771510 | None:intergenic |
GCGATACCGGATACAGTCAG+TGG | 0.683351 | 8_1:+19771209 | Msa1184170:CDS |
TGGGTCTCTTGAATAACAGG+AGG | 0.686984 | 8_1:-19772604 | None:intergenic |
GGAAGCCCGAAGATCAAATG+CGG | 0.687939 | 8_1:+19771057 | Msa1184170:CDS |
AGAGGTGAGACGGAAAACGA+CGG | 0.696263 | 8_1:-19769267 | None:intergenic |
GGAAGAGTAATTACGAAACG+AGG | 0.697124 | 8_1:-19769442 | None:intergenic |
ACAGCATTGGCAATTCGAAG+CGG | 0.702791 | 8_1:+19771008 | Msa1184170:CDS |
TCTGTTTACGAAGTTCATCG+AGG | 0.731722 | 8_1:-19769367 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAATTGAGAATTGAATT+GGG | - | chr8_1:19769468-19769487 | None:intergenic | 15.0% |
!! | ATAAAAATTGAGAATTGAAT+TGG | - | chr8_1:19769469-19769488 | None:intergenic | 15.0% |
!!! | ATTCAATTCTCAATTTTTAT+TGG | + | chr8_1:19769469-19769488 | Msa1184170:intron | 15.0% |
!! | TTGACTTAAATATTTATATC+TGG | - | chr8_1:19769889-19769908 | None:intergenic | 15.0% |
!! | ACATAATTAATAACTAAAGA+TGG | - | chr8_1:19770426-19770445 | None:intergenic | 15.0% |
!! | TTATGTGTTTCATTTAAATA+CGG | + | chr8_1:19770639-19770658 | Msa1184170:intron | 15.0% |
!!! | TGCTAAATAATTTTTGAAAA+TGG | - | chr8_1:19770842-19770861 | None:intergenic | 15.0% |
!!! | ATATTTCCTTTTAGTTAATA+TGG | + | chr8_1:19770943-19770962 | Msa1184170:intron | 15.0% |
!! | AATAAAGAAGAAATATGTAA+AGG | - | chr8_1:19771173-19771192 | None:intergenic | 15.0% |
!!! | TTGTTTTTTCTAAGAATAAT+TGG | + | chr8_1:19771583-19771602 | Msa1184170:intron | 15.0% |
!! | TTTATTAATTGTGAACATTA+TGG | - | chr8_1:19773280-19773299 | None:intergenic | 15.0% |
!!! | TTAAGCATACATTTTTTTAT+TGG | + | chr8_1:19773427-19773446 | Msa1184170:intron | 15.0% |
!! | AAAAATTGAGAATTGAATTG+GGG | - | chr8_1:19769467-19769486 | None:intergenic | 20.0% |
!!! | AAATCCCAATTTGATTTTTT+AGG | + | chr8_1:19769494-19769513 | Msa1184170:intron | 20.0% |
!!! | AATCCCAATTTGATTTTTTA+GGG | + | chr8_1:19769495-19769514 | Msa1184170:intron | 20.0% |
!! | TAACCCTAAAAAATCAAATT+GGG | - | chr8_1:19769501-19769520 | None:intergenic | 20.0% |
!!! | AATTTGATTTTTTAGGGTTA+GGG | + | chr8_1:19769501-19769520 | Msa1184170:intron | 20.0% |
!!! | TAATACATCTGTAATTCTTT+TGG | + | chr8_1:19769791-19769810 | Msa1184170:intron | 20.0% |
!!! | ATAAGATATAAAAAGTGTGT+TGG | + | chr8_1:19769911-19769930 | Msa1184170:intron | 20.0% |
!!! | TTGTTTGTTGTTTTGTAAAT+TGG | + | chr8_1:19770245-19770264 | Msa1184170:CDS | 20.0% |
!! | CAATATCCATATTAACTAAA+AGG | - | chr8_1:19770952-19770971 | None:intergenic | 20.0% |
!!! | TTTACCTATTTATTTTAGTC+AGG | + | chr8_1:19771092-19771111 | Msa1184170:intron | 20.0% |
!!! | TTACCTATTTATTTTAGTCA+GGG | + | chr8_1:19771093-19771112 | Msa1184170:intron | 20.0% |
!! | ACATATTTCTTCTTTATTGT+AGG | + | chr8_1:19771175-19771194 | Msa1184170:intron | 20.0% |
!! | AATAATGTCATGATATTCTT+AGG | + | chr8_1:19771423-19771442 | Msa1184170:intron | 20.0% |
!! | CTTGTATTAACAAAGATAAA+TGG | + | chr8_1:19771738-19771757 | Msa1184170:intron | 20.0% |
!! | ATTTATGATACCAATATTTC+AGG | + | chr8_1:19771981-19772000 | Msa1184170:intron | 20.0% |
!!! | TTTTGTAAAATTGCACAAAT+TGG | + | chr8_1:19772346-19772365 | Msa1184170:intron | 20.0% |
!! | TTTGTAAAATTGCACAAATT+GGG | + | chr8_1:19772347-19772366 | Msa1184170:intron | 20.0% |
!!! | TTTAGTTCTTACAAAATAAG+AGG | - | chr8_1:19772424-19772443 | None:intergenic | 20.0% |
!! | TAAGAACTAAAGAAACTATA+TGG | + | chr8_1:19772433-19772452 | Msa1184170:intron | 20.0% |
!! | ATATTCCTTGAATTAATACT+TGG | + | chr8_1:19773181-19773200 | Msa1184170:intron | 20.0% |
!! | TTAGACAAATTATAATACCA+AGG | + | chr8_1:19773384-19773403 | Msa1184170:intron | 20.0% |
!! | TAGACAAATTATAATACCAA+GGG | + | chr8_1:19773385-19773404 | Msa1184170:intron | 20.0% |
!!! | TTTCATAATTTTTAATCCCT+TGG | - | chr8_1:19773404-19773423 | None:intergenic | 20.0% |
! | AAAATTGAGAATTGAATTGG+GGG | - | chr8_1:19769466-19769485 | None:intergenic | 25.0% |
! | CTAACCCTAAAAAATCAAAT+TGG | - | chr8_1:19769502-19769521 | None:intergenic | 25.0% |
!!! | CAATTTGATTTTTTAGGGTT+AGG | + | chr8_1:19769500-19769519 | Msa1184170:intron | 25.0% |
!!! | AATTCTTTTGGTTCTTACAT+AGG | + | chr8_1:19769803-19769822 | Msa1184170:intron | 25.0% |
!!! | TTTTAGTTTGTTGATGTCTT+GGG | + | chr8_1:19770100-19770119 | Msa1184170:intron | 25.0% |
!! | TTGTTAATGGACAACATTAA+TGG | + | chr8_1:19770134-19770153 | Msa1184170:intron | 25.0% |
!! | TGTTAATGGACAACATTAAT+GGG | + | chr8_1:19770135-19770154 | Msa1184170:intron | 25.0% |
! | GTTATTAGAATGCATAATGT+TGG | + | chr8_1:19770165-19770184 | Msa1184170:intron | 25.0% |
!!! | TTTGTTGTTTTGTAAATTGG+CGG | + | chr8_1:19770248-19770267 | Msa1184170:CDS | 25.0% |
!!! | GTATTTTAGTTTTGTTGCTT+TGG | + | chr8_1:19770332-19770351 | Msa1184170:CDS | 25.0% |
! | TTAATTAATACTTTGTCCTC+TGG | + | chr8_1:19770738-19770757 | Msa1184170:intron | 25.0% |
! | TAATTAATACTTTGTCCTCT+GGG | + | chr8_1:19770739-19770758 | Msa1184170:intron | 25.0% |
! | GAAATATTGCATAAACGAAA+AGG | - | chr8_1:19770930-19770949 | None:intergenic | 25.0% |
! | GAATTAATAGATAACAGCAT+TGG | + | chr8_1:19770995-19771014 | Msa1184170:intron | 25.0% |
! | AAAGAAGAAATATGTAAAGG+TGG | - | chr8_1:19771170-19771189 | None:intergenic | 25.0% |
!!! | TCGAAGAACATTTTTTTCAA+GGG | - | chr8_1:19771341-19771360 | None:intergenic | 25.0% |
!! | GCTTTTCATATAAATCCATT+TGG | - | chr8_1:19771538-19771557 | None:intergenic | 25.0% |
!! | TGGATTTATATGAAAAGCAT+TGG | + | chr8_1:19771540-19771559 | Msa1184170:intron | 25.0% |
! | ATGTTTATTTATGTGGTCAA+TGG | - | chr8_1:19771894-19771913 | None:intergenic | 25.0% |
! | ATTGACCACATAAATAAACA+TGG | + | chr8_1:19771893-19771912 | Msa1184170:intron | 25.0% |
! | AACGTTTCAAGATAACAAAA+AGG | - | chr8_1:19771949-19771968 | None:intergenic | 25.0% |
!!! | TTAAACTTTTTTCTAGTTGG+AGG | - | chr8_1:19772252-19772271 | None:intergenic | 25.0% |
! | TCCAACTAGAAAAAAGTTTA+AGG | + | chr8_1:19772251-19772270 | Msa1184170:CDS | 25.0% |
! | CCAACTAGAAAAAAGTTTAA+GGG | + | chr8_1:19772252-19772271 | Msa1184170:CDS | 25.0% |
! | TTTGGCAGTTAGATAAAATA+TGG | + | chr8_1:19772286-19772305 | Msa1184170:intron | 25.0% |
! | ACAAATTGGGAATAAAAACA+AGG | + | chr8_1:19772360-19772379 | Msa1184170:intron | 25.0% |
! | TTACAAAATAAGAGGATACT+TGG | - | chr8_1:19772416-19772435 | None:intergenic | 25.0% |
!!! | TCATTGATTTGTATGCTTAT+TGG | + | chr8_1:19772804-19772823 | Msa1184170:intron | 25.0% |
!!! | CATTGATTTGTATGCTTATT+GGG | + | chr8_1:19772805-19772824 | Msa1184170:intron | 25.0% |
! | TGTATGGAATTAGGAATATT+TGG | + | chr8_1:19772866-19772885 | Msa1184170:intron | 25.0% |
! | GTATGGAATTAGGAATATTT+GGG | + | chr8_1:19772867-19772886 | Msa1184170:intron | 25.0% |
!!! | ATTTCGATAGTTTTTTTTCC+AGG | + | chr8_1:19772924-19772943 | Msa1184170:intron | 25.0% |
!! | AAATCTGAAGTGTTATTCTA+AGG | - | chr8_1:19773041-19773060 | None:intergenic | 25.0% |
! | ATCTCTTCTTAAGATTATAG+TGG | + | chr8_1:19773477-19773496 | Msa1184170:intron | 25.0% |
!! | TATTATGTAGCAGAATTTTC+TGG | + | chr8_1:19773596-19773615 | Msa1184170:CDS | 25.0% |
! | CGTAAATATCATACTATGAT+AGG | + | chr8_1:19773780-19773799 | Msa1184170:three_prime_UTR | 25.0% |
! | TTTGATTGTGTATATTCTAC+AGG | + | chr8_1:19773813-19773832 | Msa1184170:three_prime_UTR | 25.0% |
! | GTTGGAGTTTTTATACGATT+CGG | + | chr8_1:19769590-19769609 | Msa1184170:CDS | 30.0% |
! | TTGGAGTTTTTATACGATTC+GGG | + | chr8_1:19769591-19769610 | Msa1184170:CDS | 30.0% |
TAAAACATCTGAAGGTTTCA+AGG | + | chr8_1:19769626-19769645 | Msa1184170:CDS | 30.0% | |
!! | AAAAGTGTGTTGGTGTATTT+TGG | + | chr8_1:19769921-19769940 | Msa1184170:intron | 30.0% |
TTTCTGACATTCATATGTTC+TGG | + | chr8_1:19769975-19769994 | Msa1184170:intron | 30.0% | |
ACTAAAACCAACACTACTAA+GGG | - | chr8_1:19770087-19770106 | None:intergenic | 30.0% | |
AACTAAAACCAACACTACTA+AGG | - | chr8_1:19770088-19770107 | None:intergenic | 30.0% | |
!!! | GTTTTAGTTTGTTGATGTCT+TGG | + | chr8_1:19770099-19770118 | Msa1184170:intron | 30.0% |
GCATAATGTTGGTCATTATT+TGG | + | chr8_1:19770176-19770195 | Msa1184170:intron | 30.0% | |
TAATGTTGGTCATTATTTGG+AGG | + | chr8_1:19770179-19770198 | Msa1184170:intron | 30.0% | |
!!! | TTGTTGTTTTGTAAATTGGC+GGG | + | chr8_1:19770249-19770268 | Msa1184170:CDS | 30.0% |
!!! | TTTTGTTGCTTTGGAATGTT+TGG | + | chr8_1:19770341-19770360 | Msa1184170:CDS | 30.0% |
ACCATTGTTTCATATTAGTG+TGG | + | chr8_1:19770498-19770517 | Msa1184170:intron | 30.0% | |
CCATTGTTTCATATTAGTGT+GGG | + | chr8_1:19770499-19770518 | Msa1184170:intron | 30.0% | |
TTTCATATTAGTGTGGGTAT+TGG | + | chr8_1:19770505-19770524 | Msa1184170:intron | 30.0% | |
CTAGTAAATGGTACATGTAA+TGG | - | chr8_1:19770543-19770562 | None:intergenic | 30.0% | |
ATGAAACACATAATTCAGCA+AGG | - | chr8_1:19770632-19770651 | None:intergenic | 30.0% | |
AATTAATACTTTGTCCTCTG+GGG | + | chr8_1:19770740-19770759 | Msa1184170:intron | 30.0% | |
AGACTCAAATATAATCAGGA+GGG | - | chr8_1:19770768-19770787 | None:intergenic | 30.0% | |
AATGGAAGATGAATAAGACA+GGG | - | chr8_1:19770824-19770843 | None:intergenic | 30.0% | |
AAATGGAAGATGAATAAGAC+AGG | - | chr8_1:19770825-19770844 | None:intergenic | 30.0% | |
AATGGCTTATTACTTAAAGG+AGG | + | chr8_1:19771031-19771050 | Msa1184170:CDS | 30.0% | |
CTTATTACTTAAAGGAGGAA+AGG | + | chr8_1:19771036-19771055 | Msa1184170:CDS | 30.0% | |
TAGCCCTGACTAAAATAAAT+AGG | - | chr8_1:19771099-19771118 | None:intergenic | 30.0% | |
ATATTTACCTTGAGTAGATC+TGG | - | chr8_1:19771272-19771291 | None:intergenic | 30.0% | |
!!! | AAGAACATTTTTTTCAAGGG+AGG | - | chr8_1:19771338-19771357 | None:intergenic | 30.0% |
!!! | CTCGAAGAACATTTTTTTCA+AGG | - | chr8_1:19771342-19771361 | None:intergenic | 30.0% |
TTGTGACGTGAATGAATTTA+TGG | + | chr8_1:19771386-19771405 | Msa1184170:intron | 30.0% | |
TATAAATCCATTTGGAAGTG+AGG | - | chr8_1:19771530-19771549 | None:intergenic | 30.0% | |
TTGTGATGATTGAATATGCA+TGG | + | chr8_1:19771667-19771686 | Msa1184170:intron | 30.0% | |
ACCACATAAATAAACATGGA+AGG | + | chr8_1:19771897-19771916 | Msa1184170:intron | 30.0% | |
CAAAAAGGAAAACTATTCCA+AGG | - | chr8_1:19771934-19771953 | None:intergenic | 30.0% | |
GGAATAATGACCTGAAATAT+TGG | - | chr8_1:19771994-19772013 | None:intergenic | 30.0% | |
!!! | CCCTTAAACTTTTTTCTAGT+TGG | - | chr8_1:19772255-19772274 | None:intergenic | 30.0% |
! | TGCTTTAGATTCTTCTAGAT+TGG | - | chr8_1:19772470-19772489 | None:intergenic | 30.0% |
CAGTTAACAAGCATTATACA+TGG | - | chr8_1:19772724-19772743 | None:intergenic | 30.0% | |
! | AACAAGTTGGATAACATGTA+TGG | + | chr8_1:19772850-19772869 | Msa1184170:intron | 30.0% |
TGGATAACATGTATGGAATT+AGG | + | chr8_1:19772857-19772876 | Msa1184170:intron | 30.0% | |
AATTAGGAATATTTGGGTGA+GGG | + | chr8_1:19772873-19772892 | Msa1184170:intron | 30.0% | |
TTTATCTCTGTTTACAAGCT+AGG | - | chr8_1:19772978-19772997 | None:intergenic | 30.0% | |
!! | TGTTATTCTAAGGTTTCCTT+CGG | - | chr8_1:19773031-19773050 | None:intergenic | 30.0% |
AGAATTAGAAGCAGTTTCAA+TGG | + | chr8_1:19773076-19773095 | Msa1184170:intron | 30.0% | |
!! | TGTTACATGCCTTTTGATTA+GGG | - | chr8_1:19773104-19773123 | None:intergenic | 30.0% |
!! | ATGTTACATGCCTTTTGATT+AGG | - | chr8_1:19773105-19773124 | None:intergenic | 30.0% |
AACTGCCAAGTATTAATTCA+AGG | - | chr8_1:19773189-19773208 | None:intergenic | 30.0% | |
!!! | ACTTAAGCTTTTAGGATGAT+CGG | - | chr8_1:19773335-19773354 | None:intergenic | 30.0% |
! | TCCTAAAAGCTTAAGTTGTT+AGG | + | chr8_1:19773339-19773358 | Msa1184170:intron | 30.0% |
! | TCCTAACAACTTAAGCTTTT+AGG | - | chr8_1:19773343-19773362 | None:intergenic | 30.0% |
! | TTCCATTTTGTTGAAATTGC+AGG | + | chr8_1:19773550-19773569 | Msa1184170:intron | 30.0% |
! | TCCATTTTGTTGAAATTGCA+GGG | + | chr8_1:19773551-19773570 | Msa1184170:intron | 30.0% |
!!! | TAGCAGAATTTTCTGGTTTT+GGG | + | chr8_1:19773603-19773622 | Msa1184170:CDS | 30.0% |
TTCAACTCTTATGCAATTCA+TGG | + | chr8_1:19773700-19773719 | Msa1184170:three_prime_UTR | 30.0% | |
TTATGCAATTCATGGTTACA+TGG | + | chr8_1:19773708-19773727 | Msa1184170:three_prime_UTR | 30.0% | |
TATCATACTATGATAGGCTA+AGG | + | chr8_1:19773786-19773805 | Msa1184170:three_prime_UTR | 30.0% | |
! | AGATTTGTGTGTTTTGTGAG+AGG | - | chr8_1:19769157-19769176 | None:intergenic | 35.0% |
TCCAAACGTTAAAATGGTGA+GGG | - | chr8_1:19769313-19769332 | None:intergenic | 35.0% | |
TTCCAAACGTTAAAATGGTG+AGG | - | chr8_1:19769314-19769333 | None:intergenic | 35.0% | |
! | TTCATCGAGGTTTTTCTCTT+CGG | - | chr8_1:19769357-19769376 | None:intergenic | 35.0% |
TTTATTTGATTGCAGTCACC+AGG | + | chr8_1:19769563-19769582 | Msa1184170:intron | 35.0% | |
TCCTTTGGTAAAACATCTGA+AGG | + | chr8_1:19769618-19769637 | Msa1184170:CDS | 35.0% | |
! | ACCTTCAGATGTTTTACCAA+AGG | - | chr8_1:19769622-19769641 | None:intergenic | 35.0% |
TGCACAAGATATTCTGTGAA+AGG | - | chr8_1:19769750-19769769 | None:intergenic | 35.0% | |
TATCTTGTGCATCACATTCT+TGG | + | chr8_1:19769759-19769778 | Msa1184170:intron | 35.0% | |
!!! | CTTTTGGTTCTTACATAGGT+TGG | + | chr8_1:19769807-19769826 | Msa1184170:intron | 35.0% |
TAACTACATCTAGTATCTCC+AGG | - | chr8_1:19769842-19769861 | None:intergenic | 35.0% | |
!!! | TGTTGGTGTATTTTGGTTGA+AGG | + | chr8_1:19769928-19769947 | Msa1184170:intron | 35.0% |
!!! | TATTTTGGTTGAAGGCAAAC+AGG | + | chr8_1:19769936-19769955 | Msa1184170:intron | 35.0% |
!! | CAAACAGGTTAGTTTAGTTG+TGG | + | chr8_1:19769951-19769970 | Msa1184170:intron | 35.0% |
TTTGTTGATGTCTTGGGTAT+TGG | + | chr8_1:19770106-19770125 | Msa1184170:intron | 35.0% | |
TTGTTGATGTCTTGGGTATT+GGG | + | chr8_1:19770107-19770126 | Msa1184170:intron | 35.0% | |
! | GACAACATTAATGGGTCTAA+GGG | + | chr8_1:19770143-19770162 | Msa1184170:intron | 35.0% |
! | TTTTCGTTGTAACAGAGTTC+TGG | + | chr8_1:19770202-19770221 | Msa1184170:intron | 35.0% |
!!! | TGTTGTTTTGTAAATTGGCG+GGG | + | chr8_1:19770250-19770269 | Msa1184170:CDS | 35.0% |
CCCACACTAATATGAAACAA+TGG | - | chr8_1:19770502-19770521 | None:intergenic | 35.0% | |
ACCATTTACTAGAGCATGTT+TGG | + | chr8_1:19770551-19770570 | Msa1184170:intron | 35.0% | |
ACCAAACATGCTCTAGTAAA+TGG | - | chr8_1:19770555-19770574 | None:intergenic | 35.0% | |
ATACGGATCTTGAAAAGTTG+TGG | + | chr8_1:19770656-19770675 | Msa1184170:intron | 35.0% | |
GAGACTCAAATATAATCAGG+AGG | - | chr8_1:19770769-19770788 | None:intergenic | 35.0% | |
GTCGAGACTCAAATATAATC+AGG | - | chr8_1:19770772-19770791 | None:intergenic | 35.0% | |
TGCTCTTGTTCAGGTATTTA+TGG | + | chr8_1:19770796-19770815 | Msa1184170:intron | 35.0% | |
CGGAATGGCTTATTACTTAA+AGG | + | chr8_1:19771028-19771047 | Msa1184170:CDS | 35.0% | |
AAATAGGTAAACCTTGTGTG+TGG | - | chr8_1:19771083-19771102 | None:intergenic | 35.0% | |
ACAGTCAGTGGTAAACTTAT+TGG | + | chr8_1:19771221-19771240 | Msa1184170:CDS | 35.0% | |
CAGTCAGTGGTAAACTTATT+GGG | + | chr8_1:19771222-19771241 | Msa1184170:CDS | 35.0% | |
TGAAATTCCAGATCTACTCA+AGG | + | chr8_1:19771262-19771281 | Msa1184170:CDS | 35.0% | |
GATCATAGTTGCCTCAAAAT+CGG | + | chr8_1:19771711-19771730 | Msa1184170:intron | 35.0% | |
ATCATAGTTGCCTCAAAATC+GGG | + | chr8_1:19771712-19771731 | Msa1184170:intron | 35.0% | |
CTTGCAGATGTTCAAATGTA+TGG | + | chr8_1:19771761-19771780 | Msa1184170:intron | 35.0% | |
TTGCACAGTTGAAATTGTAG+AGG | + | chr8_1:19771856-19771875 | Msa1184170:CDS | 35.0% | |
GCCTTCCATGTTTATTTATG+TGG | - | chr8_1:19771901-19771920 | None:intergenic | 35.0% | |
TAACTAACATAGAATGGAGC+TGG | - | chr8_1:19772015-19772034 | None:intergenic | 35.0% | |
TCTGGGTAACTAACATAGAA+TGG | - | chr8_1:19772021-19772040 | None:intergenic | 35.0% | |
CTATGTTAGTTACCCAGAAA+TGG | + | chr8_1:19772023-19772042 | Msa1184170:CDS | 35.0% | |
! | TTCTAGGTTGGAAGAATGAT+CGG | - | chr8_1:19772069-19772088 | None:intergenic | 35.0% |
ATCATTCTTCCAACCTAGAA+AGG | + | chr8_1:19772069-19772088 | Msa1184170:CDS | 35.0% | |
TATCTGTTTCCATGTGCTTT+AGG | + | chr8_1:19772153-19772172 | Msa1184170:intron | 35.0% | |
TTAAGGGTGAGATATACGTT+TGG | + | chr8_1:19772268-19772287 | Msa1184170:intron | 35.0% | |
GGCAGTTAGATAAAATATGG+AGG | + | chr8_1:19772289-19772308 | Msa1184170:intron | 35.0% | |
TGTGTCTTCAACAATAACCT+GGG | - | chr8_1:19772626-19772645 | None:intergenic | 35.0% | |
TATTGTTGAAGACACACAGA+AGG | + | chr8_1:19772630-19772649 | Msa1184170:CDS | 35.0% | |
AGCAGAAGTTGAGAGTTTAA+AGG | + | chr8_1:19772666-19772685 | Msa1184170:CDS | 35.0% | |
!!! | CTTATTGGGCTACTTTTCAT+TGG | + | chr8_1:19772819-19772838 | Msa1184170:intron | 35.0% |
! | ATTGGTTAGCTGAAACAAGT+TGG | + | chr8_1:19772837-19772856 | Msa1184170:intron | 35.0% |
GAATTAGGAATATTTGGGTG+AGG | + | chr8_1:19772872-19772891 | Msa1184170:intron | 35.0% | |
!!! | GATAGTTTTTTTTCCAGGTC+TGG | + | chr8_1:19772929-19772948 | Msa1184170:intron | 35.0% |
TACAAGCTAGGTTGTATCAT+TGG | - | chr8_1:19772966-19772985 | None:intergenic | 35.0% | |
TCAATGGATCCCTAATCAAA+AGG | + | chr8_1:19773092-19773111 | Msa1184170:intron | 35.0% | |
ATACTGCTTCTCATATCAAC+TGG | - | chr8_1:19773141-19773160 | None:intergenic | 35.0% | |
! | CAAGTCTTTTCCCATTAAGT+GGG | + | chr8_1:19773231-19773250 | Msa1184170:intron | 35.0% |
ATGTAGTTGACCCACTTAAT+GGG | - | chr8_1:19773244-19773263 | None:intergenic | 35.0% | |
GATGATCGGTTATTGTCATT+AGG | - | chr8_1:19773321-19773340 | None:intergenic | 35.0% | |
! | AAGCTTAAGTTGTTAGGAAG+AGG | + | chr8_1:19773345-19773364 | Msa1184170:intron | 35.0% |
ACCCTGCAATTTCAACAAAA+TGG | - | chr8_1:19773555-19773574 | None:intergenic | 35.0% | |
!!! | GTAGCAGAATTTTCTGGTTT+TGG | + | chr8_1:19773602-19773621 | Msa1184170:CDS | 35.0% |
!!! | AGCAGAATTTTCTGGTTTTG+GGG | + | chr8_1:19773604-19773623 | Msa1184170:CDS | 35.0% |
TGCATAAGAGTTGAAATGCT+TGG | - | chr8_1:19773695-19773714 | None:intergenic | 35.0% | |
CCAAACGTTAAAATGGTGAG+GGG | - | chr8_1:19769312-19769331 | None:intergenic | 40.0% | |
CGGCTTTCCAAACGTTAAAA+TGG | - | chr8_1:19769319-19769338 | None:intergenic | 40.0% | |
TCTGTTTACGAAGTTCATCG+AGG | - | chr8_1:19769370-19769389 | None:intergenic | 40.0% | |
GGAAGAGTAATTACGAAACG+AGG | - | chr8_1:19769445-19769464 | None:intergenic | 40.0% | |
ATAAAAACTCCAACCTCTCC+TGG | - | chr8_1:19769584-19769603 | None:intergenic | 40.0% | |
! | TACGATTCGGGATTATCCTT+TGG | + | chr8_1:19769603-19769622 | Msa1184170:CDS | 40.0% |
ACATACCTTAGAAGCAGAAG+AGG | - | chr8_1:19769694-19769713 | None:intergenic | 40.0% | |
! | TTGGGTTGTGTTTGATGTTG+TGG | + | chr8_1:19770040-19770059 | Msa1184170:intron | 40.0% |
TTGTGTTTGATGTTGTGGCT+TGG | + | chr8_1:19770045-19770064 | Msa1184170:intron | 40.0% | |
!! | GGTATTGGGTGGTTTGTTAA+TGG | + | chr8_1:19770121-19770140 | Msa1184170:intron | 40.0% |
! | GGACAACATTAATGGGTCTA+AGG | + | chr8_1:19770142-19770161 | Msa1184170:intron | 40.0% |
! | TTTTGTAAATTGGCGGGGTT+TGG | + | chr8_1:19770255-19770274 | Msa1184170:CDS | 40.0% |
!! | TGTTGCTTTGGAATGTTTGG+CGG | + | chr8_1:19770344-19770363 | Msa1184170:CDS | 40.0% |
!! | AATACCTGAACAAGAGCATC+AGG | - | chr8_1:19770794-19770813 | None:intergenic | 40.0% |
!!! | GTCAGGGCTATAGTTTTTTC+AGG | + | chr8_1:19771109-19771128 | Msa1184170:intron | 40.0% |
GGTTGTAATTTCAGCGATAC+CGG | + | chr8_1:19771196-19771215 | Msa1184170:intron | 40.0% | |
! | AGTTTACCACTGACTGTATC+CGG | - | chr8_1:19771218-19771237 | None:intergenic | 40.0% |
CACAAGGATCTGTCATGTAA+TGG | + | chr8_1:19771460-19771479 | Msa1184170:CDS | 40.0% | |
AAGGATCTGTCATGTAATGG+TGG | + | chr8_1:19771463-19771482 | Msa1184170:CDS | 40.0% | |
! | ATACAAGCTTCCCGATTTTG+AGG | - | chr8_1:19771725-19771744 | None:intergenic | 40.0% |
GCAGATGTTCAAATGTATGG+TGG | + | chr8_1:19771764-19771783 | Msa1184170:intron | 40.0% | |
CGCTTCAGCAATATTTAGCA+CGG | - | chr8_1:19771804-19771823 | None:intergenic | 40.0% | |
TTAGTTACCCAGAAATGGCA+AGG | + | chr8_1:19772028-19772047 | Msa1184170:CDS | 40.0% | |
TTTCTTCAGCCTTTCTAGGT+TGG | - | chr8_1:19772081-19772100 | None:intergenic | 40.0% | |
AACCTAGAAAGGCTGAAGAA+AGG | + | chr8_1:19772080-19772099 | Msa1184170:CDS | 40.0% | |
TACCTTTCTTCAGCCTTTCT+AGG | - | chr8_1:19772085-19772104 | None:intergenic | 40.0% | |
CTTTAGGCTTCAAGAGAAAC+TGG | + | chr8_1:19772169-19772188 | Msa1184170:intron | 40.0% | |
TGGTGCACTTAAAGAAGCAA+AGG | + | chr8_1:19772189-19772208 | Msa1184170:CDS | 40.0% | |
GGATAAGCTTGAAAAACGAG+TGG | + | chr8_1:19772210-19772229 | Msa1184170:CDS | 40.0% | |
TAAGCTTGAAAAACGAGTGG+AGG | + | chr8_1:19772213-19772232 | Msa1184170:CDS | 40.0% | |
!! | ATTCTTCTAGATTGGTCTGC+AGG | - | chr8_1:19772462-19772481 | None:intergenic | 40.0% |
GTGTGTCTTCAACAATAACC+TGG | - | chr8_1:19772627-19772646 | None:intergenic | 40.0% | |
! | TAAGATGCTTTCAGTACCGA+AGG | + | chr8_1:19773012-19773031 | Msa1184170:intron | 40.0% |
TGCTTCTCATATCAACTGGT+GGG | - | chr8_1:19773137-19773156 | None:intergenic | 40.0% | |
CCACTTAATGGGAAAAGACT+TGG | - | chr8_1:19773233-19773252 | None:intergenic | 40.0% | |
! | CCAAGTCTTTTCCCATTAAG+TGG | + | chr8_1:19773230-19773249 | Msa1184170:intron | 40.0% |
CATGTAGTTGACCCACTTAA+TGG | - | chr8_1:19773245-19773264 | None:intergenic | 40.0% | |
AGTTCTTGTGAGGTGTATAG+TGG | + | chr8_1:19773508-19773527 | Msa1184170:intron | 40.0% | |
TGAAATTGCAGGGTTTCGTT+TGG | + | chr8_1:19773561-19773580 | Msa1184170:intron | 40.0% | |
TGAAATGCTTGGATCGCTAT+CGG | - | chr8_1:19773684-19773703 | None:intergenic | 40.0% | |
GCTGTGAAACGATGGTGAAA+CGG | - | chr8_1:19769219-19769238 | None:intergenic | 45.0% | |
GAAAACGAGCTGTGAAACGA+TGG | - | chr8_1:19769227-19769246 | None:intergenic | 45.0% | |
AATGGTGAGGGGTGAAAAGA+CGG | - | chr8_1:19769301-19769320 | None:intergenic | 45.0% | |
!! | CCCCTCACCATTTTAACGTT+TGG | + | chr8_1:19769309-19769328 | Msa1184170:CDS | 45.0% |
! | TTCGGCGCTATGCTTTTGTT+CGG | - | chr8_1:19769339-19769358 | None:intergenic | 45.0% |
TAGCGAGTTTCGTCTTCTTC+AGG | + | chr8_1:19769409-19769428 | Msa1184170:CDS | 45.0% | |
AGCGAGTTTCGTCTTCTTCA+GGG | + | chr8_1:19769410-19769429 | Msa1184170:CDS | 45.0% | |
GTTTCGTCTTCTTCAGGGAA+AGG | + | chr8_1:19769415-19769434 | Msa1184170:CDS | 45.0% | |
ACCTTCCTCTTCTGCTTCTA+AGG | + | chr8_1:19769686-19769705 | Msa1184170:CDS | 45.0% | |
ACCTTAGAAGCAGAAGAGGA+AGG | - | chr8_1:19769690-19769709 | None:intergenic | 45.0% | |
ATTCGAGCCCTTAGTAGTGT+TGG | + | chr8_1:19770077-19770096 | Msa1184170:intron | 45.0% | |
!! | TTGATGTCTTGGGTATTGGG+TGG | + | chr8_1:19770110-19770129 | Msa1184170:intron | 45.0% |
GTTCTGGTGTGACAAATTGC+AGG | + | chr8_1:19770218-19770237 | Msa1184170:CDS | 45.0% | |
! | AATTGGCGGGGTTTGGAATT+TGG | + | chr8_1:19770262-19770281 | Msa1184170:CDS | 45.0% |
! | ATTGGCGGGGTTTGGAATTT+GGG | + | chr8_1:19770263-19770282 | Msa1184170:CDS | 45.0% |
AGACTCGAAAACTGAATCGC+AGG | - | chr8_1:19770303-19770322 | None:intergenic | 45.0% | |
!! | GTTGCTTTGGAATGTTTGGC+GGG | + | chr8_1:19770345-19770364 | Msa1184170:CDS | 45.0% |
GGTACATGTAATGGTTGCCT+TGG | - | chr8_1:19770534-19770553 | None:intergenic | 45.0% | |
TCAAGTGAAGCTGGAGGAAA+CGG | - | chr8_1:19770590-19770609 | None:intergenic | 45.0% | |
TTTCCTCCAGCTTCACTTGA+AGG | + | chr8_1:19770590-19770609 | Msa1184170:intron | 45.0% | |
ACTACACCTTCAAGTGAAGC+TGG | - | chr8_1:19770599-19770618 | None:intergenic | 45.0% | |
TTTGCCTTGAACCCTGATTG+AGG | - | chr8_1:19770691-19770710 | None:intergenic | 45.0% | |
TCAATCAGGGTTCAAGGCAA+AGG | + | chr8_1:19770690-19770709 | Msa1184170:intron | 45.0% | |
!! | ACAGCATTGGCAATTCGAAG+CGG | + | chr8_1:19771008-19771027 | Msa1184170:CDS | 45.0% |
ATTGGCAATTCGAAGCGGAA+TGG | + | chr8_1:19771013-19771032 | Msa1184170:CDS | 45.0% | |
GGAGACTCTTCTTGTACACA+AGG | + | chr8_1:19771444-19771463 | Msa1184170:intron | 45.0% | |
ATCCTTGAACTCCAACGTGA+AGG | + | chr8_1:19771499-19771518 | Msa1184170:CDS | 45.0% | |
AACCTTCACGTTGGAGTTCA+AGG | - | chr8_1:19771504-19771523 | None:intergenic | 45.0% | |
TGAACTCCAACGTGAAGGTT+TGG | + | chr8_1:19771504-19771523 | Msa1184170:intron | 45.0% | |
!!! | TTTAGCACGGCACTAGCTTT+TGG | - | chr8_1:19771791-19771810 | None:intergenic | 45.0% |
! | GGAAGGCATGTTTGATTCCT+TGG | + | chr8_1:19771914-19771933 | Msa1184170:intron | 45.0% |
TTACCCAGAAATGGCAAGGT+TGG | + | chr8_1:19772032-19772051 | Msa1184170:CDS | 45.0% | |
CTCTTGAAGCCTAAAGCACA+TGG | - | chr8_1:19772165-19772184 | None:intergenic | 45.0% | |
GGATACTTGGTCACTTGCAT+AGG | - | chr8_1:19772403-19772422 | None:intergenic | 45.0% | |
TTTGCTCTGCATATCCTGCA+GGG | - | chr8_1:19772518-19772537 | None:intergenic | 45.0% | |
AACCACTTCCATGCTTGCAA+AGG | + | chr8_1:19772546-19772565 | Msa1184170:CDS | 45.0% | |
TTCTTGCTCCTTTGCAAGCA+TGG | - | chr8_1:19772557-19772576 | None:intergenic | 45.0% | |
!! | AACAGGAGGTGCTTCTTCAA+TGG | - | chr8_1:19772593-19772612 | None:intergenic | 45.0% |
TGGGTCTCTTGAATAACAGG+AGG | - | chr8_1:19772607-19772626 | None:intergenic | 45.0% | |
TCCTGTTATTCAAGAGACCC+AGG | + | chr8_1:19772606-19772625 | Msa1184170:CDS | 45.0% | |
ACCTGGGTCTCTTGAATAAC+AGG | - | chr8_1:19772610-19772629 | None:intergenic | 45.0% | |
GGATATATCATGTCCAGACC+TGG | - | chr8_1:19772945-19772964 | None:intergenic | 45.0% | |
CTGCTTCTCATATCAACTGG+TGG | - | chr8_1:19773138-19773157 | None:intergenic | 45.0% | |
GGTACACTCAAGTTCTTGTG+AGG | + | chr8_1:19773498-19773517 | Msa1184170:intron | 45.0% | |
GTATTGCAGCTGCAGATTAG+TGG | + | chr8_1:19773626-19773645 | Msa1184170:CDS | 45.0% | |
AACGGTGAGTGAGTGTTCGA+GGG | - | chr8_1:19769201-19769220 | None:intergenic | 50.0% | |
AAACGGTGAGTGAGTGTTCG+AGG | - | chr8_1:19769202-19769221 | None:intergenic | 50.0% | |
AGAGGTGAGACGGAAAACGA+CGG | - | chr8_1:19769270-19769289 | None:intergenic | 50.0% | |
GAAAAGACGGTGAGTCTGAG+AGG | - | chr8_1:19769288-19769307 | None:intergenic | 50.0% | |
TTGATTGCAGTCACCAGGAG+AGG | + | chr8_1:19769568-19769587 | Msa1184170:intron | 50.0% | |
!! | GCATCGGTTGGATCGGATTT+AGG | - | chr8_1:19769666-19769685 | None:intergenic | 50.0% |
! | AGCAGAAGAGGAAGGTGCAT+CGG | - | chr8_1:19769682-19769701 | None:intergenic | 50.0% |
CTGTGAAAGGTGAGTCTGAG+AGG | - | chr8_1:19769737-19769756 | None:intergenic | 50.0% | |
! | ATAGGTTGGACAACTGAGCC+TGG | + | chr8_1:19769821-19769840 | Msa1184170:intron | 50.0% |
!! | CTAGTTCTGCTGCAGTGTTG+TGG | + | chr8_1:19770013-19770032 | Msa1184170:intron | 50.0% |
! | CTGCAGTGTTGTGGCGTTTT+GGG | + | chr8_1:19770022-19770041 | Msa1184170:intron | 50.0% |
! | CGGGTCTGTCTGTTCAGTTT+TGG | + | chr8_1:19770364-19770383 | Msa1184170:intron | 50.0% |
!! | AGTGTGGGTATTGGACACCA+AGG | + | chr8_1:19770514-19770533 | Msa1184170:intron | 50.0% |
CAAGTGAAGCTGGAGGAAAC+GGG | - | chr8_1:19770589-19770608 | None:intergenic | 50.0% | |
ACACCTTCAAGTGAAGCTGG+AGG | - | chr8_1:19770596-19770615 | None:intergenic | 50.0% | |
TGGAACCATCCACCTCAATC+AGG | + | chr8_1:19770676-19770695 | Msa1184170:intron | 50.0% | |
GGAACCATCCACCTCAATCA+GGG | + | chr8_1:19770677-19770696 | Msa1184170:intron | 50.0% | |
TGAACCCTGATTGAGGTGGA+TGG | - | chr8_1:19770684-19770703 | None:intergenic | 50.0% | |
TCCACCTCAATCAGGGTTCA+AGG | + | chr8_1:19770684-19770703 | Msa1184170:intron | 50.0% | |
TCGACCTGATGCTCTTGTTC+AGG | + | chr8_1:19770787-19770806 | Msa1184170:intron | 50.0% | |
GGAAGCCCGAAGATCAAATG+CGG | + | chr8_1:19771057-19771076 | Msa1184170:CDS | 50.0% | |
TGTGGCCGCATTTGATCTTC+GGG | - | chr8_1:19771065-19771084 | None:intergenic | 50.0% | |
GTGTGGCCGCATTTGATCTT+CGG | - | chr8_1:19771066-19771085 | None:intergenic | 50.0% | |
ATCAAATGCGGCCACACACA+AGG | + | chr8_1:19771069-19771088 | Msa1184170:CDS | 50.0% | |
GGTTTGGCCTCACTTCCAAA+TGG | + | chr8_1:19771520-19771539 | Msa1184170:intron | 50.0% | |
! | CAGCCAACCTTGCCATTTCT+GGG | - | chr8_1:19772038-19772057 | None:intergenic | 50.0% |
! | TCAGCCAACCTTGCCATTTC+TGG | - | chr8_1:19772039-19772058 | None:intergenic | 50.0% |
AACGAGTGGAGGAACTCACA+TGG | + | chr8_1:19772224-19772243 | Msa1184170:CDS | 50.0% | |
AAAACTGCAGAACTCCCTGC+AGG | + | chr8_1:19772501-19772520 | Msa1184170:CDS | 50.0% | |
CTTTGCTCTGCATATCCTGC+AGG | - | chr8_1:19772519-19772538 | None:intergenic | 50.0% | |
CTCCTTTGCAAGCATGGAAG+TGG | - | chr8_1:19772551-19772570 | None:intergenic | 50.0% | |
AGGAATATTTGGGTGAGGGC+TGG | + | chr8_1:19772877-19772896 | Msa1184170:intron | 50.0% | |
!! | CAGGGTTTCGTTTGGTGTGT+GGG | + | chr8_1:19773569-19773588 | Msa1184170:intron | 50.0% |
ACGGTGAGTGAGTGTTCGAG+GGG | - | chr8_1:19769200-19769219 | None:intergenic | 55.0% | |
GGCGAGTGTGAGAGGTGATA+GGG | - | chr8_1:19769249-19769268 | None:intergenic | 55.0% | |
AAAACGACGGCGAGTGTGAG+AGG | - | chr8_1:19769257-19769276 | None:intergenic | 55.0% | |
GGTGAGTCTGAGAGGTGAGA+CGG | - | chr8_1:19769280-19769299 | None:intergenic | 55.0% | |
CGTCTTCTTCAGGGAAAGGC+TGG | + | chr8_1:19769419-19769438 | Msa1184170:CDS | 55.0% | |
TTGCAGTCACCAGGAGAGGT+TGG | + | chr8_1:19769572-19769591 | Msa1184170:intron | 55.0% | |
!! | GGAAGGTGCATCGGTTGGAT+CGG | - | chr8_1:19769673-19769692 | None:intergenic | 55.0% |
! | GAAGAGGAAGGTGCATCGGT+TGG | - | chr8_1:19769678-19769697 | None:intergenic | 55.0% |
! | GCTGCAGTGTTGTGGCGTTT+TGG | + | chr8_1:19770021-19770040 | Msa1184170:intron | 55.0% |
GCCTTGAACCCTGATTGAGG+TGG | - | chr8_1:19770688-19770707 | None:intergenic | 55.0% | |
GCGATACCGGATACAGTCAG+TGG | + | chr8_1:19771209-19771228 | Msa1184170:CDS | 55.0% | |
GTGAGGCCAAACCTTCACGT+TGG | - | chr8_1:19771513-19771532 | None:intergenic | 55.0% | |
!! | GCAGGGTTTCGTTTGGTGTG+TGG | + | chr8_1:19773568-19773587 | Msa1184170:intron | 55.0% |
CGGCGAGTGTGAGAGGTGAT+AGG | - | chr8_1:19769250-19769269 | None:intergenic | 60.0% | |
!! | TAATCAGGAGGGCACCCCAG+AGG | - | chr8_1:19770757-19770776 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 19769146 | 19773870 | 19769146 | ID=Msa1184170;Name=Msa1184170 |
chr8_1 | mRNA | 19769146 | 19773870 | 19769146 | ID=Msa1184170-mRNA-1;Parent=Msa1184170;Name=Msa1184170-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.58|0.53|1|0.75|0.69|13|215|491 |
chr8_1 | exon | 19769146 | 19769450 | 19769146 | ID=Msa1184170-mRNA-1:exon:7627;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19769578 | 19769707 | 19769578 | ID=Msa1184170-mRNA-1:exon:7628;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19769825 | 19769862 | 19769825 | ID=Msa1184170-mRNA-1:exon:7629;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19769950 | 19769957 | 19769950 | ID=Msa1184170-mRNA-1:exon:7630;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19770217 | 19770366 | 19770217 | ID=Msa1184170-mRNA-1:exon:7631;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19771005 | 19771090 | 19771005 | ID=Msa1184170-mRNA-1:exon:7632;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19771197 | 19771283 | 19771197 | ID=Msa1184170-mRNA-1:exon:7633;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19771445 | 19771520 | 19771445 | ID=Msa1184170-mRNA-1:exon:7634;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19771768 | 19771880 | 19771768 | ID=Msa1184170-mRNA-1:exon:7635;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19772016 | 19772101 | 19772016 | ID=Msa1184170-mRNA-1:exon:7636;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19772183 | 19772273 | 19772183 | ID=Msa1184170-mRNA-1:exon:7637;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19772466 | 19772687 | 19772466 | ID=Msa1184170-mRNA-1:exon:7638;Parent=Msa1184170-mRNA-1 |
chr8_1 | exon | 19773572 | 19773870 | 19773572 | ID=Msa1184170-mRNA-1:exon:7639;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19769146 | 19769450 | 19769146 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19769578 | 19769707 | 19769578 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19769825 | 19769862 | 19769825 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19769950 | 19769957 | 19769950 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19770217 | 19770366 | 19770217 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19771005 | 19771090 | 19771005 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19771197 | 19771283 | 19771197 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19771445 | 19771520 | 19771445 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19771768 | 19771880 | 19771768 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19772016 | 19772101 | 19772016 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19772183 | 19772273 | 19772183 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19772466 | 19772687 | 19772466 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | CDS | 19773572 | 19773655 | 19773572 | ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1 |
chr8_1 | three_prime_UTR | 19773656 | 19773870 | 19773656 | ID=Msa1184170-mRNA-1:three_prime_utr;Parent=Msa1184170-mRNA-1 |
Gene Sequence |
Protein sequence |