AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184170 MtrunA17_Chr7g0274361 98.095 105 2 0 360 464 863 967 6.62e-55 198
Msa1184170 MtrunA17_Chr2g0291211 73.109 119 29 2 60 176 21 138 8.94e-46 167
Msa1184170 MtrunA17_Chr4g0070771 60.163 123 48 1 343 464 864 986 1.98e-36 144
Msa1184170 MtrunA17_Chr1g0190471 68.571 105 33 0 360 464 914 1018 9.33e-35 139
Msa1184170 MtrunA17_Chr4g0008951 48.333 180 25 4 220 332 471 649 1.96e-34 137
Msa1184170 MtrunA17_Chr2g0309291 61.765 102 37 1 356 457 877 976 4.45e-29 122
Msa1184170 MtrunA17_Chr7g0239721 39.674 184 44 3 220 336 431 614 1.89e-27 116
Msa1184170 MtrunA17_Chr1g0183001 48.819 127 60 3 341 467 867 988 4.12e-22 100
Msa1184170 MtrunA17_Chr3g0112411 36.957 184 49 3 220 336 431 614 1.23e-21 98.6
Msa1184170 MtrunA17_Chr7g0262581 48.031 127 61 3 341 467 866 987 3.57e-21 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184170 AT1G54560.1 61.832 131 48 1 335 465 862 990 8.04e-39 151
Msa1184170 AT1G54560.2 61.832 131 48 1 335 465 859 987 9.85e-39 151
Msa1184170 AT5G20490.3 58.871 124 50 1 343 465 798 921 2.62e-35 141
Msa1184170 AT5G20490.2 58.871 124 50 1 343 465 864 987 3.02e-35 140
Msa1184170 AT5G20490.1 58.871 124 50 1 343 465 863 986 3.22e-35 140
Msa1184170 AT5G20470.1 61.818 110 42 0 356 465 97 206 2.49e-32 130
Msa1184170 AT1G08730.1 56.923 130 54 1 335 464 867 994 1.93e-29 123
Msa1184170 AT1G08730.2 56.923 130 54 1 335 464 859 986 2.02e-29 123
Msa1184170 AT1G17580.1 51.852 135 61 3 334 467 854 985 3.95e-29 122
Msa1184170 AT2G31900.4 54.098 122 47 3 360 473 881 1001 2.95e-28 119
Msa1184170 AT2G31900.1 54.098 122 47 3 360 473 881 1001 2.95e-28 119
Msa1184170 AT2G31900.2 54.098 122 47 3 360 473 881 1001 3.23e-28 119
Msa1184170 AT2G31900.5 54.098 122 47 3 360 473 766 886 3.51e-28 119
Msa1184170 AT2G31900.3 54.098 122 47 3 360 473 623 743 3.98e-28 119
Msa1184170 AT3G55610.2 40.217 184 43 3 220 336 431 614 9.66e-27 114
Msa1184170 AT1G04160.1 51.969 127 56 3 341 467 865 986 1.06e-26 115
Msa1184170 AT1G04160.2 51.969 127 56 3 341 467 865 986 1.14e-26 115
Msa1184170 AT3G55610.1 40.217 184 43 3 220 336 431 614 1.37e-26 114
Msa1184170 AT2G39800.3 39.227 181 46 3 220 336 431 611 1.04e-25 111
Msa1184170 AT5G43900.3 55.357 112 47 2 356 467 937 1045 1.05e-24 108
Msa1184170 AT5G43900.1 55.357 112 47 2 356 467 877 985 1.06e-24 108
Msa1184170 AT5G43900.2 55.357 112 47 2 356 467 934 1042 1.15e-24 108
Msa1184170 AT2G39800.2 38.043 184 47 4 220 336 328 511 2.19e-23 103
Msa1184170 AT2G39800.1 38.043 184 47 4 220 336 431 614 2.29e-23 104
Msa1184170 AT2G39800.4 38.043 184 47 4 220 336 431 614 2.29e-23 104
Msa1184170 AT4G28710.1 49.606 127 59 3 341 467 871 992 7.21e-23 103
Msa1184170 AT2G44200.1 72.131 61 17 0 61 121 22 82 8.97e-18 86.3
Msa1184170 AT2G20290.4 44.882 127 65 2 341 467 859 980 3.58e-15 79.3
Msa1184170 AT2G20290.1 44.882 127 65 2 341 467 870 991 3.72e-15 79.3
Msa1184170 AT2G20290.3 44.882 127 65 2 341 467 859 980 3.90e-15 79.0
Msa1184170 AT2G20290.2 44.882 127 65 2 341 467 859 980 3.91e-15 79.0
Msa1184170 AT4G33200.3 43.689 103 53 3 334 435 862 960 7.31e-12 68.6
Msa1184170 AT4G33200.2 43.689 103 53 3 334 435 862 960 7.56e-12 68.6
Msa1184170 AT4G33200.1 43.689 103 53 3 334 435 862 960 7.99e-12 68.6
Msa1184170 AT4G33200.4 43.689 103 53 3 334 435 862 960 8.21e-12 68.6
Msa1184170 AT1G04600.1 38.596 114 62 2 343 455 863 969 9.91e-12 68.2

Find 112 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCCAACCTTGCCATTTC+TGG 0.082081 8_1:-19772036 None:intergenic
AATTGGCGGGGTTTGGAATT+TGG 0.121133 8_1:+19770262 Msa1184170:CDS
CGGAATGGCTTATTACTTAA+AGG 0.197712 8_1:+19771028 Msa1184170:CDS
ATTGGCGGGGTTTGGAATTT+GGG 0.209909 8_1:+19770263 Msa1184170:CDS
TACCTTTCTTCAGCCTTTCT+AGG 0.223759 8_1:-19772082 None:intergenic
CGGCTTTCCAAACGTTAAAA+TGG 0.244644 8_1:-19769316 None:intergenic
ACCTTCCTCTTCTGCTTCTA+AGG 0.260807 8_1:+19769686 Msa1184170:CDS
GCATCGGTTGGATCGGATTT+AGG 0.271226 8_1:-19769663 None:intergenic
ACAGTCAGTGGTAAACTTAT+TGG 0.283272 8_1:+19771221 Msa1184170:CDS
TTCAACTCTTATGCAATTCA+TGG 0.288852 8_1:+19773700 Msa1184170:three_prime_UTR
TAGCGAGTTTCGTCTTCTTC+AGG 0.292067 8_1:+19769409 Msa1184170:CDS
AGCAGAAGTTGAGAGTTTAA+AGG 0.297990 8_1:+19772666 Msa1184170:CDS
TGCTTTAGATTCTTCTAGAT+TGG 0.299225 8_1:-19772467 None:intergenic
TTTAGCACGGCACTAGCTTT+TGG 0.332476 8_1:-19771788 None:intergenic
CGTAAATATCATACTATGAT+AGG 0.342206 8_1:+19773780 Msa1184170:three_prime_UTR
CAGTCAGTGGTAAACTTATT+GGG 0.342857 8_1:+19771222 Msa1184170:CDS
ACCTGGGTCTCTTGAATAAC+AGG 0.348834 8_1:-19772607 None:intergenic
CGGCGAGTGTGAGAGGTGAT+AGG 0.361885 8_1:-19769247 None:intergenic
GTGTGGCCGCATTTGATCTT+CGG 0.365281 8_1:-19771063 None:intergenic
CTTTAGGCTTCAAGAGAAAC+TGG 0.373193 8_1:+19772169 Msa1184170:intron
TACGATTCGGGATTATCCTT+TGG 0.373378 8_1:+19769603 Msa1184170:CDS
TGTGGCCGCATTTGATCTTC+GGG 0.377586 8_1:-19771062 None:intergenic
CTCCTTTGCAAGCATGGAAG+TGG 0.396423 8_1:-19772548 None:intergenic
CAGCCAACCTTGCCATTTCT+GGG 0.398372 8_1:-19772035 None:intergenic
ATATTTACCTTGAGTAGATC+TGG 0.406296 8_1:-19771269 None:intergenic
TTTGATTGTGTATATTCTAC+AGG 0.409026 8_1:+19773813 Msa1184170:three_prime_UTR
AACCTTCACGTTGGAGTTCA+AGG 0.410020 8_1:-19771501 None:intergenic
CGTCTTCTTCAGGGAAAGGC+TGG 0.419475 8_1:+19769419 Msa1184170:CDS
CTATGTTAGTTACCCAGAAA+TGG 0.430251 8_1:+19772023 Msa1184170:CDS
AACAGGAGGTGCTTCTTCAA+TGG 0.434920 8_1:-19772590 None:intergenic
CAGGGTTTCGTTTGGTGTGT+GGG 0.447001 8_1:+19773569 Msa1184170:intron
TTCTTGCTCCTTTGCAAGCA+TGG 0.447770 8_1:-19772554 None:intergenic
TGCATAAGAGTTGAAATGCT+TGG 0.449626 8_1:-19773692 None:intergenic
TTTCTTCAGCCTTTCTAGGT+TGG 0.449763 8_1:-19772078 None:intergenic
TAAAACATCTGAAGGTTTCA+AGG 0.450452 8_1:+19769626 Msa1184170:CDS
CTTTGCTCTGCATATCCTGC+AGG 0.464178 8_1:-19772516 None:intergenic
GGTTGTAATTTCAGCGATAC+CGG 0.465623 8_1:+19771196 Msa1184170:intron
ATCATTCTTCCAACCTAGAA+AGG 0.471188 8_1:+19772069 Msa1184170:CDS
AGTTTACCACTGACTGTATC+CGG 0.476556 8_1:-19771215 None:intergenic
AGCGAGTTTCGTCTTCTTCA+GGG 0.479075 8_1:+19769410 Msa1184170:CDS
TTATGCAATTCATGGTTACA+TGG 0.479966 8_1:+19773708 Msa1184170:three_prime_UTR
GTTTCGTCTTCTTCAGGGAA+AGG 0.489572 8_1:+19769415 Msa1184170:CDS
TCTGGGTAACTAACATAGAA+TGG 0.491015 8_1:-19772018 None:intergenic
GTTCTGGTGTGACAAATTGC+AGG 0.492018 8_1:+19770218 Msa1184170:CDS
TGAAATTGCAGGGTTTCGTT+TGG 0.494240 8_1:+19773561 Msa1184170:intron
TCCTTTGGTAAAACATCTGA+AGG 0.503657 8_1:+19769618 Msa1184170:CDS
GTATTGCAGCTGCAGATTAG+TGG 0.509159 8_1:+19773626 Msa1184170:CDS
TTTATTTGATTGCAGTCACC+AGG 0.510866 8_1:+19769563 Msa1184170:intron
TTACCCAGAAATGGCAAGGT+TGG 0.511235 8_1:+19772032 Msa1184170:CDS
CTTGCAGATGTTCAAATGTA+TGG 0.512027 8_1:+19771761 Msa1184170:intron
ATAGGTTGGACAACTGAGCC+TGG 0.516815 8_1:+19769821 Msa1184170:intron
GTGTGTCTTCAACAATAACC+TGG 0.522981 8_1:-19772624 None:intergenic
AAACGGTGAGTGAGTGTTCG+AGG 0.524336 8_1:-19769199 None:intergenic
TGTTGCTTTGGAATGTTTGG+CGG 0.526887 8_1:+19770344 Msa1184170:CDS
ACATACCTTAGAAGCAGAAG+AGG 0.529706 8_1:-19769691 None:intergenic
TATCATACTATGATAGGCTA+AGG 0.530076 8_1:+19773786 Msa1184170:three_prime_UTR
CTTATTACTTAAAGGAGGAA+AGG 0.531505 8_1:+19771036 Msa1184170:CDS
AATGGTGAGGGGTGAAAAGA+CGG 0.531998 8_1:-19769298 None:intergenic
TTGCAGTCACCAGGAGAGGT+TGG 0.533295 8_1:+19769572 Msa1184170:intron
TTCTAGGTTGGAAGAATGAT+CGG 0.533680 8_1:-19772066 None:intergenic
GAAGAGGAAGGTGCATCGGT+TGG 0.537194 8_1:-19769675 None:intergenic
TCCAAACGTTAAAATGGTGA+GGG 0.538195 8_1:-19769310 None:intergenic
GGCGAGTGTGAGAGGTGATA+GGG 0.538963 8_1:-19769246 None:intergenic
AACCTAGAAAGGCTGAAGAA+AGG 0.540687 8_1:+19772080 Msa1184170:CDS
AGCAGAAGAGGAAGGTGCAT+CGG 0.541174 8_1:-19769679 None:intergenic
TTCCAAACGTTAAAATGGTG+AGG 0.547112 8_1:-19769311 None:intergenic
TGAAATGCTTGGATCGCTAT+CGG 0.548124 8_1:-19773681 None:intergenic
GCAGGGTTTCGTTTGGTGTG+TGG 0.549581 8_1:+19773568 Msa1184170:intron
CGCTTCAGCAATATTTAGCA+CGG 0.550469 8_1:-19771801 None:intergenic
TAACTACATCTAGTATCTCC+AGG 0.550832 8_1:-19769839 None:intergenic
GTTGCTTTGGAATGTTTGGC+GGG 0.555896 8_1:+19770345 Msa1184170:CDS
GGAAGGTGCATCGGTTGGAT+CGG 0.561720 8_1:-19769670 None:intergenic
ATCCTTGAACTCCAACGTGA+AGG 0.565086 8_1:+19771499 Msa1184170:CDS
GCTGTGAAACGATGGTGAAA+CGG 0.574161 8_1:-19769216 None:intergenic
ATTGGCAATTCGAAGCGGAA+TGG 0.575491 8_1:+19771013 Msa1184170:CDS
AGACTCGAAAACTGAATCGC+AGG 0.579247 8_1:-19770300 None:intergenic
AACGGTGAGTGAGTGTTCGA+GGG 0.580528 8_1:-19769198 None:intergenic
TCCTGTTATTCAAGAGACCC+AGG 0.583194 8_1:+19772606 Msa1184170:CDS
CACAAGGATCTGTCATGTAA+TGG 0.583937 8_1:+19771460 Msa1184170:CDS
TGGTGCACTTAAAGAAGCAA+AGG 0.584874 8_1:+19772189 Msa1184170:CDS
AAAACTGCAGAACTCCCTGC+AGG 0.585169 8_1:+19772501 Msa1184170:CDS
AACCACTTCCATGCTTGCAA+AGG 0.589102 8_1:+19772546 Msa1184170:CDS
TTGATTGCAGTCACCAGGAG+AGG 0.592164 8_1:+19769568 Msa1184170:intron
GAATTAATAGATAACAGCAT+TGG 0.593270 8_1:+19770995 Msa1184170:intron
AATGGCTTATTACTTAAAGG+AGG 0.594695 8_1:+19771031 Msa1184170:CDS
AAAACGACGGCGAGTGTGAG+AGG 0.595341 8_1:-19769254 None:intergenic
TTGCACAGTTGAAATTGTAG+AGG 0.600256 8_1:+19771856 Msa1184170:CDS
TTAGTTACCCAGAAATGGCA+AGG 0.602241 8_1:+19772028 Msa1184170:CDS
ATCAAATGCGGCCACACACA+AGG 0.609948 8_1:+19771069 Msa1184170:CDS
TATTGTTGAAGACACACAGA+AGG 0.615421 8_1:+19772630 Msa1184170:CDS
GGAGACTCTTCTTGTACACA+AGG 0.627269 8_1:+19771444 Msa1184170:intron
GGTGAGTCTGAGAGGTGAGA+CGG 0.632273 8_1:-19769277 None:intergenic
ACCTTAGAAGCAGAAGAGGA+AGG 0.633895 8_1:-19769687 None:intergenic
GAAAAGACGGTGAGTCTGAG+AGG 0.634974 8_1:-19769285 None:intergenic
TTTGCTCTGCATATCCTGCA+GGG 0.636069 8_1:-19772515 None:intergenic
TGAAATTCCAGATCTACTCA+AGG 0.642854 8_1:+19771262 Msa1184170:CDS
CCAAACGTTAAAATGGTGAG+GGG 0.649730 8_1:-19769309 None:intergenic
TGTGTCTTCAACAATAACCT+GGG 0.649976 8_1:-19772623 None:intergenic
AAATAGGTAAACCTTGTGTG+TGG 0.652655 8_1:-19771080 None:intergenic
AACGAGTGGAGGAACTCACA+TGG 0.660298 8_1:+19772224 Msa1184170:CDS
AAGGATCTGTCATGTAATGG+TGG 0.660536 8_1:+19771463 Msa1184170:CDS
GCAGATGTTCAAATGTATGG+TGG 0.661578 8_1:+19771764 Msa1184170:intron
GAAAACGAGCTGTGAAACGA+TGG 0.664401 8_1:-19769224 None:intergenic
ACGGTGAGTGAGTGTTCGAG+GGG 0.668456 8_1:-19769197 None:intergenic
GTGAGGCCAAACCTTCACGT+TGG 0.680539 8_1:-19771510 None:intergenic
GCGATACCGGATACAGTCAG+TGG 0.683351 8_1:+19771209 Msa1184170:CDS
TGGGTCTCTTGAATAACAGG+AGG 0.686984 8_1:-19772604 None:intergenic
GGAAGCCCGAAGATCAAATG+CGG 0.687939 8_1:+19771057 Msa1184170:CDS
AGAGGTGAGACGGAAAACGA+CGG 0.696263 8_1:-19769267 None:intergenic
GGAAGAGTAATTACGAAACG+AGG 0.697124 8_1:-19769442 None:intergenic
ACAGCATTGGCAATTCGAAG+CGG 0.702791 8_1:+19771008 Msa1184170:CDS
TCTGTTTACGAAGTTCATCG+AGG 0.731722 8_1:-19769367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTGAGAATTGAATT+GGG - chr8_1:19769468-19769487 None:intergenic 15.0%
!! ATAAAAATTGAGAATTGAAT+TGG - chr8_1:19769469-19769488 None:intergenic 15.0%
!!! ATTCAATTCTCAATTTTTAT+TGG + chr8_1:19769469-19769488 Msa1184170:intron 15.0%
!! TTGACTTAAATATTTATATC+TGG - chr8_1:19769889-19769908 None:intergenic 15.0%
!! ACATAATTAATAACTAAAGA+TGG - chr8_1:19770426-19770445 None:intergenic 15.0%
!! TTATGTGTTTCATTTAAATA+CGG + chr8_1:19770639-19770658 Msa1184170:intron 15.0%
!!! TGCTAAATAATTTTTGAAAA+TGG - chr8_1:19770842-19770861 None:intergenic 15.0%
!!! ATATTTCCTTTTAGTTAATA+TGG + chr8_1:19770943-19770962 Msa1184170:intron 15.0%
!! AATAAAGAAGAAATATGTAA+AGG - chr8_1:19771173-19771192 None:intergenic 15.0%
!!! TTGTTTTTTCTAAGAATAAT+TGG + chr8_1:19771583-19771602 Msa1184170:intron 15.0%
!! TTTATTAATTGTGAACATTA+TGG - chr8_1:19773280-19773299 None:intergenic 15.0%
!!! TTAAGCATACATTTTTTTAT+TGG + chr8_1:19773427-19773446 Msa1184170:intron 15.0%
!! AAAAATTGAGAATTGAATTG+GGG - chr8_1:19769467-19769486 None:intergenic 20.0%
!!! AAATCCCAATTTGATTTTTT+AGG + chr8_1:19769494-19769513 Msa1184170:intron 20.0%
!!! AATCCCAATTTGATTTTTTA+GGG + chr8_1:19769495-19769514 Msa1184170:intron 20.0%
!! TAACCCTAAAAAATCAAATT+GGG - chr8_1:19769501-19769520 None:intergenic 20.0%
!!! AATTTGATTTTTTAGGGTTA+GGG + chr8_1:19769501-19769520 Msa1184170:intron 20.0%
!!! TAATACATCTGTAATTCTTT+TGG + chr8_1:19769791-19769810 Msa1184170:intron 20.0%
!!! ATAAGATATAAAAAGTGTGT+TGG + chr8_1:19769911-19769930 Msa1184170:intron 20.0%
!!! TTGTTTGTTGTTTTGTAAAT+TGG + chr8_1:19770245-19770264 Msa1184170:CDS 20.0%
!! CAATATCCATATTAACTAAA+AGG - chr8_1:19770952-19770971 None:intergenic 20.0%
!!! TTTACCTATTTATTTTAGTC+AGG + chr8_1:19771092-19771111 Msa1184170:intron 20.0%
!!! TTACCTATTTATTTTAGTCA+GGG + chr8_1:19771093-19771112 Msa1184170:intron 20.0%
!! ACATATTTCTTCTTTATTGT+AGG + chr8_1:19771175-19771194 Msa1184170:intron 20.0%
!! AATAATGTCATGATATTCTT+AGG + chr8_1:19771423-19771442 Msa1184170:intron 20.0%
!! CTTGTATTAACAAAGATAAA+TGG + chr8_1:19771738-19771757 Msa1184170:intron 20.0%
!! ATTTATGATACCAATATTTC+AGG + chr8_1:19771981-19772000 Msa1184170:intron 20.0%
!!! TTTTGTAAAATTGCACAAAT+TGG + chr8_1:19772346-19772365 Msa1184170:intron 20.0%
!! TTTGTAAAATTGCACAAATT+GGG + chr8_1:19772347-19772366 Msa1184170:intron 20.0%
!!! TTTAGTTCTTACAAAATAAG+AGG - chr8_1:19772424-19772443 None:intergenic 20.0%
!! TAAGAACTAAAGAAACTATA+TGG + chr8_1:19772433-19772452 Msa1184170:intron 20.0%
!! ATATTCCTTGAATTAATACT+TGG + chr8_1:19773181-19773200 Msa1184170:intron 20.0%
!! TTAGACAAATTATAATACCA+AGG + chr8_1:19773384-19773403 Msa1184170:intron 20.0%
!! TAGACAAATTATAATACCAA+GGG + chr8_1:19773385-19773404 Msa1184170:intron 20.0%
!!! TTTCATAATTTTTAATCCCT+TGG - chr8_1:19773404-19773423 None:intergenic 20.0%
! AAAATTGAGAATTGAATTGG+GGG - chr8_1:19769466-19769485 None:intergenic 25.0%
! CTAACCCTAAAAAATCAAAT+TGG - chr8_1:19769502-19769521 None:intergenic 25.0%
!!! CAATTTGATTTTTTAGGGTT+AGG + chr8_1:19769500-19769519 Msa1184170:intron 25.0%
!!! AATTCTTTTGGTTCTTACAT+AGG + chr8_1:19769803-19769822 Msa1184170:intron 25.0%
!!! TTTTAGTTTGTTGATGTCTT+GGG + chr8_1:19770100-19770119 Msa1184170:intron 25.0%
!! TTGTTAATGGACAACATTAA+TGG + chr8_1:19770134-19770153 Msa1184170:intron 25.0%
!! TGTTAATGGACAACATTAAT+GGG + chr8_1:19770135-19770154 Msa1184170:intron 25.0%
! GTTATTAGAATGCATAATGT+TGG + chr8_1:19770165-19770184 Msa1184170:intron 25.0%
!!! TTTGTTGTTTTGTAAATTGG+CGG + chr8_1:19770248-19770267 Msa1184170:CDS 25.0%
!!! GTATTTTAGTTTTGTTGCTT+TGG + chr8_1:19770332-19770351 Msa1184170:CDS 25.0%
! TTAATTAATACTTTGTCCTC+TGG + chr8_1:19770738-19770757 Msa1184170:intron 25.0%
! TAATTAATACTTTGTCCTCT+GGG + chr8_1:19770739-19770758 Msa1184170:intron 25.0%
! GAAATATTGCATAAACGAAA+AGG - chr8_1:19770930-19770949 None:intergenic 25.0%
! GAATTAATAGATAACAGCAT+TGG + chr8_1:19770995-19771014 Msa1184170:intron 25.0%
! AAAGAAGAAATATGTAAAGG+TGG - chr8_1:19771170-19771189 None:intergenic 25.0%
!!! TCGAAGAACATTTTTTTCAA+GGG - chr8_1:19771341-19771360 None:intergenic 25.0%
!! GCTTTTCATATAAATCCATT+TGG - chr8_1:19771538-19771557 None:intergenic 25.0%
!! TGGATTTATATGAAAAGCAT+TGG + chr8_1:19771540-19771559 Msa1184170:intron 25.0%
! ATGTTTATTTATGTGGTCAA+TGG - chr8_1:19771894-19771913 None:intergenic 25.0%
! ATTGACCACATAAATAAACA+TGG + chr8_1:19771893-19771912 Msa1184170:intron 25.0%
! AACGTTTCAAGATAACAAAA+AGG - chr8_1:19771949-19771968 None:intergenic 25.0%
!!! TTAAACTTTTTTCTAGTTGG+AGG - chr8_1:19772252-19772271 None:intergenic 25.0%
! TCCAACTAGAAAAAAGTTTA+AGG + chr8_1:19772251-19772270 Msa1184170:CDS 25.0%
! CCAACTAGAAAAAAGTTTAA+GGG + chr8_1:19772252-19772271 Msa1184170:CDS 25.0%
! TTTGGCAGTTAGATAAAATA+TGG + chr8_1:19772286-19772305 Msa1184170:intron 25.0%
! ACAAATTGGGAATAAAAACA+AGG + chr8_1:19772360-19772379 Msa1184170:intron 25.0%
! TTACAAAATAAGAGGATACT+TGG - chr8_1:19772416-19772435 None:intergenic 25.0%
!!! TCATTGATTTGTATGCTTAT+TGG + chr8_1:19772804-19772823 Msa1184170:intron 25.0%
!!! CATTGATTTGTATGCTTATT+GGG + chr8_1:19772805-19772824 Msa1184170:intron 25.0%
! TGTATGGAATTAGGAATATT+TGG + chr8_1:19772866-19772885 Msa1184170:intron 25.0%
! GTATGGAATTAGGAATATTT+GGG + chr8_1:19772867-19772886 Msa1184170:intron 25.0%
!!! ATTTCGATAGTTTTTTTTCC+AGG + chr8_1:19772924-19772943 Msa1184170:intron 25.0%
!! AAATCTGAAGTGTTATTCTA+AGG - chr8_1:19773041-19773060 None:intergenic 25.0%
! ATCTCTTCTTAAGATTATAG+TGG + chr8_1:19773477-19773496 Msa1184170:intron 25.0%
!! TATTATGTAGCAGAATTTTC+TGG + chr8_1:19773596-19773615 Msa1184170:CDS 25.0%
! CGTAAATATCATACTATGAT+AGG + chr8_1:19773780-19773799 Msa1184170:three_prime_UTR 25.0%
! TTTGATTGTGTATATTCTAC+AGG + chr8_1:19773813-19773832 Msa1184170:three_prime_UTR 25.0%
! GTTGGAGTTTTTATACGATT+CGG + chr8_1:19769590-19769609 Msa1184170:CDS 30.0%
! TTGGAGTTTTTATACGATTC+GGG + chr8_1:19769591-19769610 Msa1184170:CDS 30.0%
TAAAACATCTGAAGGTTTCA+AGG + chr8_1:19769626-19769645 Msa1184170:CDS 30.0%
!! AAAAGTGTGTTGGTGTATTT+TGG + chr8_1:19769921-19769940 Msa1184170:intron 30.0%
TTTCTGACATTCATATGTTC+TGG + chr8_1:19769975-19769994 Msa1184170:intron 30.0%
ACTAAAACCAACACTACTAA+GGG - chr8_1:19770087-19770106 None:intergenic 30.0%
AACTAAAACCAACACTACTA+AGG - chr8_1:19770088-19770107 None:intergenic 30.0%
!!! GTTTTAGTTTGTTGATGTCT+TGG + chr8_1:19770099-19770118 Msa1184170:intron 30.0%
GCATAATGTTGGTCATTATT+TGG + chr8_1:19770176-19770195 Msa1184170:intron 30.0%
TAATGTTGGTCATTATTTGG+AGG + chr8_1:19770179-19770198 Msa1184170:intron 30.0%
!!! TTGTTGTTTTGTAAATTGGC+GGG + chr8_1:19770249-19770268 Msa1184170:CDS 30.0%
!!! TTTTGTTGCTTTGGAATGTT+TGG + chr8_1:19770341-19770360 Msa1184170:CDS 30.0%
ACCATTGTTTCATATTAGTG+TGG + chr8_1:19770498-19770517 Msa1184170:intron 30.0%
CCATTGTTTCATATTAGTGT+GGG + chr8_1:19770499-19770518 Msa1184170:intron 30.0%
TTTCATATTAGTGTGGGTAT+TGG + chr8_1:19770505-19770524 Msa1184170:intron 30.0%
CTAGTAAATGGTACATGTAA+TGG - chr8_1:19770543-19770562 None:intergenic 30.0%
ATGAAACACATAATTCAGCA+AGG - chr8_1:19770632-19770651 None:intergenic 30.0%
AATTAATACTTTGTCCTCTG+GGG + chr8_1:19770740-19770759 Msa1184170:intron 30.0%
AGACTCAAATATAATCAGGA+GGG - chr8_1:19770768-19770787 None:intergenic 30.0%
AATGGAAGATGAATAAGACA+GGG - chr8_1:19770824-19770843 None:intergenic 30.0%
AAATGGAAGATGAATAAGAC+AGG - chr8_1:19770825-19770844 None:intergenic 30.0%
AATGGCTTATTACTTAAAGG+AGG + chr8_1:19771031-19771050 Msa1184170:CDS 30.0%
CTTATTACTTAAAGGAGGAA+AGG + chr8_1:19771036-19771055 Msa1184170:CDS 30.0%
TAGCCCTGACTAAAATAAAT+AGG - chr8_1:19771099-19771118 None:intergenic 30.0%
ATATTTACCTTGAGTAGATC+TGG - chr8_1:19771272-19771291 None:intergenic 30.0%
!!! AAGAACATTTTTTTCAAGGG+AGG - chr8_1:19771338-19771357 None:intergenic 30.0%
!!! CTCGAAGAACATTTTTTTCA+AGG - chr8_1:19771342-19771361 None:intergenic 30.0%
TTGTGACGTGAATGAATTTA+TGG + chr8_1:19771386-19771405 Msa1184170:intron 30.0%
TATAAATCCATTTGGAAGTG+AGG - chr8_1:19771530-19771549 None:intergenic 30.0%
TTGTGATGATTGAATATGCA+TGG + chr8_1:19771667-19771686 Msa1184170:intron 30.0%
ACCACATAAATAAACATGGA+AGG + chr8_1:19771897-19771916 Msa1184170:intron 30.0%
CAAAAAGGAAAACTATTCCA+AGG - chr8_1:19771934-19771953 None:intergenic 30.0%
GGAATAATGACCTGAAATAT+TGG - chr8_1:19771994-19772013 None:intergenic 30.0%
!!! CCCTTAAACTTTTTTCTAGT+TGG - chr8_1:19772255-19772274 None:intergenic 30.0%
! TGCTTTAGATTCTTCTAGAT+TGG - chr8_1:19772470-19772489 None:intergenic 30.0%
CAGTTAACAAGCATTATACA+TGG - chr8_1:19772724-19772743 None:intergenic 30.0%
! AACAAGTTGGATAACATGTA+TGG + chr8_1:19772850-19772869 Msa1184170:intron 30.0%
TGGATAACATGTATGGAATT+AGG + chr8_1:19772857-19772876 Msa1184170:intron 30.0%
AATTAGGAATATTTGGGTGA+GGG + chr8_1:19772873-19772892 Msa1184170:intron 30.0%
TTTATCTCTGTTTACAAGCT+AGG - chr8_1:19772978-19772997 None:intergenic 30.0%
!! TGTTATTCTAAGGTTTCCTT+CGG - chr8_1:19773031-19773050 None:intergenic 30.0%
AGAATTAGAAGCAGTTTCAA+TGG + chr8_1:19773076-19773095 Msa1184170:intron 30.0%
!! TGTTACATGCCTTTTGATTA+GGG - chr8_1:19773104-19773123 None:intergenic 30.0%
!! ATGTTACATGCCTTTTGATT+AGG - chr8_1:19773105-19773124 None:intergenic 30.0%
AACTGCCAAGTATTAATTCA+AGG - chr8_1:19773189-19773208 None:intergenic 30.0%
!!! ACTTAAGCTTTTAGGATGAT+CGG - chr8_1:19773335-19773354 None:intergenic 30.0%
! TCCTAAAAGCTTAAGTTGTT+AGG + chr8_1:19773339-19773358 Msa1184170:intron 30.0%
! TCCTAACAACTTAAGCTTTT+AGG - chr8_1:19773343-19773362 None:intergenic 30.0%
! TTCCATTTTGTTGAAATTGC+AGG + chr8_1:19773550-19773569 Msa1184170:intron 30.0%
! TCCATTTTGTTGAAATTGCA+GGG + chr8_1:19773551-19773570 Msa1184170:intron 30.0%
!!! TAGCAGAATTTTCTGGTTTT+GGG + chr8_1:19773603-19773622 Msa1184170:CDS 30.0%
TTCAACTCTTATGCAATTCA+TGG + chr8_1:19773700-19773719 Msa1184170:three_prime_UTR 30.0%
TTATGCAATTCATGGTTACA+TGG + chr8_1:19773708-19773727 Msa1184170:three_prime_UTR 30.0%
TATCATACTATGATAGGCTA+AGG + chr8_1:19773786-19773805 Msa1184170:three_prime_UTR 30.0%
! AGATTTGTGTGTTTTGTGAG+AGG - chr8_1:19769157-19769176 None:intergenic 35.0%
TCCAAACGTTAAAATGGTGA+GGG - chr8_1:19769313-19769332 None:intergenic 35.0%
TTCCAAACGTTAAAATGGTG+AGG - chr8_1:19769314-19769333 None:intergenic 35.0%
! TTCATCGAGGTTTTTCTCTT+CGG - chr8_1:19769357-19769376 None:intergenic 35.0%
TTTATTTGATTGCAGTCACC+AGG + chr8_1:19769563-19769582 Msa1184170:intron 35.0%
TCCTTTGGTAAAACATCTGA+AGG + chr8_1:19769618-19769637 Msa1184170:CDS 35.0%
! ACCTTCAGATGTTTTACCAA+AGG - chr8_1:19769622-19769641 None:intergenic 35.0%
TGCACAAGATATTCTGTGAA+AGG - chr8_1:19769750-19769769 None:intergenic 35.0%
TATCTTGTGCATCACATTCT+TGG + chr8_1:19769759-19769778 Msa1184170:intron 35.0%
!!! CTTTTGGTTCTTACATAGGT+TGG + chr8_1:19769807-19769826 Msa1184170:intron 35.0%
TAACTACATCTAGTATCTCC+AGG - chr8_1:19769842-19769861 None:intergenic 35.0%
!!! TGTTGGTGTATTTTGGTTGA+AGG + chr8_1:19769928-19769947 Msa1184170:intron 35.0%
!!! TATTTTGGTTGAAGGCAAAC+AGG + chr8_1:19769936-19769955 Msa1184170:intron 35.0%
!! CAAACAGGTTAGTTTAGTTG+TGG + chr8_1:19769951-19769970 Msa1184170:intron 35.0%
TTTGTTGATGTCTTGGGTAT+TGG + chr8_1:19770106-19770125 Msa1184170:intron 35.0%
TTGTTGATGTCTTGGGTATT+GGG + chr8_1:19770107-19770126 Msa1184170:intron 35.0%
! GACAACATTAATGGGTCTAA+GGG + chr8_1:19770143-19770162 Msa1184170:intron 35.0%
! TTTTCGTTGTAACAGAGTTC+TGG + chr8_1:19770202-19770221 Msa1184170:intron 35.0%
!!! TGTTGTTTTGTAAATTGGCG+GGG + chr8_1:19770250-19770269 Msa1184170:CDS 35.0%
CCCACACTAATATGAAACAA+TGG - chr8_1:19770502-19770521 None:intergenic 35.0%
ACCATTTACTAGAGCATGTT+TGG + chr8_1:19770551-19770570 Msa1184170:intron 35.0%
ACCAAACATGCTCTAGTAAA+TGG - chr8_1:19770555-19770574 None:intergenic 35.0%
ATACGGATCTTGAAAAGTTG+TGG + chr8_1:19770656-19770675 Msa1184170:intron 35.0%
GAGACTCAAATATAATCAGG+AGG - chr8_1:19770769-19770788 None:intergenic 35.0%
GTCGAGACTCAAATATAATC+AGG - chr8_1:19770772-19770791 None:intergenic 35.0%
TGCTCTTGTTCAGGTATTTA+TGG + chr8_1:19770796-19770815 Msa1184170:intron 35.0%
CGGAATGGCTTATTACTTAA+AGG + chr8_1:19771028-19771047 Msa1184170:CDS 35.0%
AAATAGGTAAACCTTGTGTG+TGG - chr8_1:19771083-19771102 None:intergenic 35.0%
ACAGTCAGTGGTAAACTTAT+TGG + chr8_1:19771221-19771240 Msa1184170:CDS 35.0%
CAGTCAGTGGTAAACTTATT+GGG + chr8_1:19771222-19771241 Msa1184170:CDS 35.0%
TGAAATTCCAGATCTACTCA+AGG + chr8_1:19771262-19771281 Msa1184170:CDS 35.0%
GATCATAGTTGCCTCAAAAT+CGG + chr8_1:19771711-19771730 Msa1184170:intron 35.0%
ATCATAGTTGCCTCAAAATC+GGG + chr8_1:19771712-19771731 Msa1184170:intron 35.0%
CTTGCAGATGTTCAAATGTA+TGG + chr8_1:19771761-19771780 Msa1184170:intron 35.0%
TTGCACAGTTGAAATTGTAG+AGG + chr8_1:19771856-19771875 Msa1184170:CDS 35.0%
GCCTTCCATGTTTATTTATG+TGG - chr8_1:19771901-19771920 None:intergenic 35.0%
TAACTAACATAGAATGGAGC+TGG - chr8_1:19772015-19772034 None:intergenic 35.0%
TCTGGGTAACTAACATAGAA+TGG - chr8_1:19772021-19772040 None:intergenic 35.0%
CTATGTTAGTTACCCAGAAA+TGG + chr8_1:19772023-19772042 Msa1184170:CDS 35.0%
! TTCTAGGTTGGAAGAATGAT+CGG - chr8_1:19772069-19772088 None:intergenic 35.0%
ATCATTCTTCCAACCTAGAA+AGG + chr8_1:19772069-19772088 Msa1184170:CDS 35.0%
TATCTGTTTCCATGTGCTTT+AGG + chr8_1:19772153-19772172 Msa1184170:intron 35.0%
TTAAGGGTGAGATATACGTT+TGG + chr8_1:19772268-19772287 Msa1184170:intron 35.0%
GGCAGTTAGATAAAATATGG+AGG + chr8_1:19772289-19772308 Msa1184170:intron 35.0%
TGTGTCTTCAACAATAACCT+GGG - chr8_1:19772626-19772645 None:intergenic 35.0%
TATTGTTGAAGACACACAGA+AGG + chr8_1:19772630-19772649 Msa1184170:CDS 35.0%
AGCAGAAGTTGAGAGTTTAA+AGG + chr8_1:19772666-19772685 Msa1184170:CDS 35.0%
!!! CTTATTGGGCTACTTTTCAT+TGG + chr8_1:19772819-19772838 Msa1184170:intron 35.0%
! ATTGGTTAGCTGAAACAAGT+TGG + chr8_1:19772837-19772856 Msa1184170:intron 35.0%
GAATTAGGAATATTTGGGTG+AGG + chr8_1:19772872-19772891 Msa1184170:intron 35.0%
!!! GATAGTTTTTTTTCCAGGTC+TGG + chr8_1:19772929-19772948 Msa1184170:intron 35.0%
TACAAGCTAGGTTGTATCAT+TGG - chr8_1:19772966-19772985 None:intergenic 35.0%
TCAATGGATCCCTAATCAAA+AGG + chr8_1:19773092-19773111 Msa1184170:intron 35.0%
ATACTGCTTCTCATATCAAC+TGG - chr8_1:19773141-19773160 None:intergenic 35.0%
! CAAGTCTTTTCCCATTAAGT+GGG + chr8_1:19773231-19773250 Msa1184170:intron 35.0%
ATGTAGTTGACCCACTTAAT+GGG - chr8_1:19773244-19773263 None:intergenic 35.0%
GATGATCGGTTATTGTCATT+AGG - chr8_1:19773321-19773340 None:intergenic 35.0%
! AAGCTTAAGTTGTTAGGAAG+AGG + chr8_1:19773345-19773364 Msa1184170:intron 35.0%
ACCCTGCAATTTCAACAAAA+TGG - chr8_1:19773555-19773574 None:intergenic 35.0%
!!! GTAGCAGAATTTTCTGGTTT+TGG + chr8_1:19773602-19773621 Msa1184170:CDS 35.0%
!!! AGCAGAATTTTCTGGTTTTG+GGG + chr8_1:19773604-19773623 Msa1184170:CDS 35.0%
TGCATAAGAGTTGAAATGCT+TGG - chr8_1:19773695-19773714 None:intergenic 35.0%
CCAAACGTTAAAATGGTGAG+GGG - chr8_1:19769312-19769331 None:intergenic 40.0%
CGGCTTTCCAAACGTTAAAA+TGG - chr8_1:19769319-19769338 None:intergenic 40.0%
TCTGTTTACGAAGTTCATCG+AGG - chr8_1:19769370-19769389 None:intergenic 40.0%
GGAAGAGTAATTACGAAACG+AGG - chr8_1:19769445-19769464 None:intergenic 40.0%
ATAAAAACTCCAACCTCTCC+TGG - chr8_1:19769584-19769603 None:intergenic 40.0%
! TACGATTCGGGATTATCCTT+TGG + chr8_1:19769603-19769622 Msa1184170:CDS 40.0%
ACATACCTTAGAAGCAGAAG+AGG - chr8_1:19769694-19769713 None:intergenic 40.0%
! TTGGGTTGTGTTTGATGTTG+TGG + chr8_1:19770040-19770059 Msa1184170:intron 40.0%
TTGTGTTTGATGTTGTGGCT+TGG + chr8_1:19770045-19770064 Msa1184170:intron 40.0%
!! GGTATTGGGTGGTTTGTTAA+TGG + chr8_1:19770121-19770140 Msa1184170:intron 40.0%
! GGACAACATTAATGGGTCTA+AGG + chr8_1:19770142-19770161 Msa1184170:intron 40.0%
! TTTTGTAAATTGGCGGGGTT+TGG + chr8_1:19770255-19770274 Msa1184170:CDS 40.0%
!! TGTTGCTTTGGAATGTTTGG+CGG + chr8_1:19770344-19770363 Msa1184170:CDS 40.0%
!! AATACCTGAACAAGAGCATC+AGG - chr8_1:19770794-19770813 None:intergenic 40.0%
!!! GTCAGGGCTATAGTTTTTTC+AGG + chr8_1:19771109-19771128 Msa1184170:intron 40.0%
GGTTGTAATTTCAGCGATAC+CGG + chr8_1:19771196-19771215 Msa1184170:intron 40.0%
! AGTTTACCACTGACTGTATC+CGG - chr8_1:19771218-19771237 None:intergenic 40.0%
CACAAGGATCTGTCATGTAA+TGG + chr8_1:19771460-19771479 Msa1184170:CDS 40.0%
AAGGATCTGTCATGTAATGG+TGG + chr8_1:19771463-19771482 Msa1184170:CDS 40.0%
! ATACAAGCTTCCCGATTTTG+AGG - chr8_1:19771725-19771744 None:intergenic 40.0%
GCAGATGTTCAAATGTATGG+TGG + chr8_1:19771764-19771783 Msa1184170:intron 40.0%
CGCTTCAGCAATATTTAGCA+CGG - chr8_1:19771804-19771823 None:intergenic 40.0%
TTAGTTACCCAGAAATGGCA+AGG + chr8_1:19772028-19772047 Msa1184170:CDS 40.0%
TTTCTTCAGCCTTTCTAGGT+TGG - chr8_1:19772081-19772100 None:intergenic 40.0%
AACCTAGAAAGGCTGAAGAA+AGG + chr8_1:19772080-19772099 Msa1184170:CDS 40.0%
TACCTTTCTTCAGCCTTTCT+AGG - chr8_1:19772085-19772104 None:intergenic 40.0%
CTTTAGGCTTCAAGAGAAAC+TGG + chr8_1:19772169-19772188 Msa1184170:intron 40.0%
TGGTGCACTTAAAGAAGCAA+AGG + chr8_1:19772189-19772208 Msa1184170:CDS 40.0%
GGATAAGCTTGAAAAACGAG+TGG + chr8_1:19772210-19772229 Msa1184170:CDS 40.0%
TAAGCTTGAAAAACGAGTGG+AGG + chr8_1:19772213-19772232 Msa1184170:CDS 40.0%
!! ATTCTTCTAGATTGGTCTGC+AGG - chr8_1:19772462-19772481 None:intergenic 40.0%
GTGTGTCTTCAACAATAACC+TGG - chr8_1:19772627-19772646 None:intergenic 40.0%
! TAAGATGCTTTCAGTACCGA+AGG + chr8_1:19773012-19773031 Msa1184170:intron 40.0%
TGCTTCTCATATCAACTGGT+GGG - chr8_1:19773137-19773156 None:intergenic 40.0%
CCACTTAATGGGAAAAGACT+TGG - chr8_1:19773233-19773252 None:intergenic 40.0%
! CCAAGTCTTTTCCCATTAAG+TGG + chr8_1:19773230-19773249 Msa1184170:intron 40.0%
CATGTAGTTGACCCACTTAA+TGG - chr8_1:19773245-19773264 None:intergenic 40.0%
AGTTCTTGTGAGGTGTATAG+TGG + chr8_1:19773508-19773527 Msa1184170:intron 40.0%
TGAAATTGCAGGGTTTCGTT+TGG + chr8_1:19773561-19773580 Msa1184170:intron 40.0%
TGAAATGCTTGGATCGCTAT+CGG - chr8_1:19773684-19773703 None:intergenic 40.0%
GCTGTGAAACGATGGTGAAA+CGG - chr8_1:19769219-19769238 None:intergenic 45.0%
GAAAACGAGCTGTGAAACGA+TGG - chr8_1:19769227-19769246 None:intergenic 45.0%
AATGGTGAGGGGTGAAAAGA+CGG - chr8_1:19769301-19769320 None:intergenic 45.0%
!! CCCCTCACCATTTTAACGTT+TGG + chr8_1:19769309-19769328 Msa1184170:CDS 45.0%
! TTCGGCGCTATGCTTTTGTT+CGG - chr8_1:19769339-19769358 None:intergenic 45.0%
TAGCGAGTTTCGTCTTCTTC+AGG + chr8_1:19769409-19769428 Msa1184170:CDS 45.0%
AGCGAGTTTCGTCTTCTTCA+GGG + chr8_1:19769410-19769429 Msa1184170:CDS 45.0%
GTTTCGTCTTCTTCAGGGAA+AGG + chr8_1:19769415-19769434 Msa1184170:CDS 45.0%
ACCTTCCTCTTCTGCTTCTA+AGG + chr8_1:19769686-19769705 Msa1184170:CDS 45.0%
ACCTTAGAAGCAGAAGAGGA+AGG - chr8_1:19769690-19769709 None:intergenic 45.0%
ATTCGAGCCCTTAGTAGTGT+TGG + chr8_1:19770077-19770096 Msa1184170:intron 45.0%
!! TTGATGTCTTGGGTATTGGG+TGG + chr8_1:19770110-19770129 Msa1184170:intron 45.0%
GTTCTGGTGTGACAAATTGC+AGG + chr8_1:19770218-19770237 Msa1184170:CDS 45.0%
! AATTGGCGGGGTTTGGAATT+TGG + chr8_1:19770262-19770281 Msa1184170:CDS 45.0%
! ATTGGCGGGGTTTGGAATTT+GGG + chr8_1:19770263-19770282 Msa1184170:CDS 45.0%
AGACTCGAAAACTGAATCGC+AGG - chr8_1:19770303-19770322 None:intergenic 45.0%
!! GTTGCTTTGGAATGTTTGGC+GGG + chr8_1:19770345-19770364 Msa1184170:CDS 45.0%
GGTACATGTAATGGTTGCCT+TGG - chr8_1:19770534-19770553 None:intergenic 45.0%
TCAAGTGAAGCTGGAGGAAA+CGG - chr8_1:19770590-19770609 None:intergenic 45.0%
TTTCCTCCAGCTTCACTTGA+AGG + chr8_1:19770590-19770609 Msa1184170:intron 45.0%
ACTACACCTTCAAGTGAAGC+TGG - chr8_1:19770599-19770618 None:intergenic 45.0%
TTTGCCTTGAACCCTGATTG+AGG - chr8_1:19770691-19770710 None:intergenic 45.0%
TCAATCAGGGTTCAAGGCAA+AGG + chr8_1:19770690-19770709 Msa1184170:intron 45.0%
!! ACAGCATTGGCAATTCGAAG+CGG + chr8_1:19771008-19771027 Msa1184170:CDS 45.0%
ATTGGCAATTCGAAGCGGAA+TGG + chr8_1:19771013-19771032 Msa1184170:CDS 45.0%
GGAGACTCTTCTTGTACACA+AGG + chr8_1:19771444-19771463 Msa1184170:intron 45.0%
ATCCTTGAACTCCAACGTGA+AGG + chr8_1:19771499-19771518 Msa1184170:CDS 45.0%
AACCTTCACGTTGGAGTTCA+AGG - chr8_1:19771504-19771523 None:intergenic 45.0%
TGAACTCCAACGTGAAGGTT+TGG + chr8_1:19771504-19771523 Msa1184170:intron 45.0%
!!! TTTAGCACGGCACTAGCTTT+TGG - chr8_1:19771791-19771810 None:intergenic 45.0%
! GGAAGGCATGTTTGATTCCT+TGG + chr8_1:19771914-19771933 Msa1184170:intron 45.0%
TTACCCAGAAATGGCAAGGT+TGG + chr8_1:19772032-19772051 Msa1184170:CDS 45.0%
CTCTTGAAGCCTAAAGCACA+TGG - chr8_1:19772165-19772184 None:intergenic 45.0%
GGATACTTGGTCACTTGCAT+AGG - chr8_1:19772403-19772422 None:intergenic 45.0%
TTTGCTCTGCATATCCTGCA+GGG - chr8_1:19772518-19772537 None:intergenic 45.0%
AACCACTTCCATGCTTGCAA+AGG + chr8_1:19772546-19772565 Msa1184170:CDS 45.0%
TTCTTGCTCCTTTGCAAGCA+TGG - chr8_1:19772557-19772576 None:intergenic 45.0%
!! AACAGGAGGTGCTTCTTCAA+TGG - chr8_1:19772593-19772612 None:intergenic 45.0%
TGGGTCTCTTGAATAACAGG+AGG - chr8_1:19772607-19772626 None:intergenic 45.0%
TCCTGTTATTCAAGAGACCC+AGG + chr8_1:19772606-19772625 Msa1184170:CDS 45.0%
ACCTGGGTCTCTTGAATAAC+AGG - chr8_1:19772610-19772629 None:intergenic 45.0%
GGATATATCATGTCCAGACC+TGG - chr8_1:19772945-19772964 None:intergenic 45.0%
CTGCTTCTCATATCAACTGG+TGG - chr8_1:19773138-19773157 None:intergenic 45.0%
GGTACACTCAAGTTCTTGTG+AGG + chr8_1:19773498-19773517 Msa1184170:intron 45.0%
GTATTGCAGCTGCAGATTAG+TGG + chr8_1:19773626-19773645 Msa1184170:CDS 45.0%
AACGGTGAGTGAGTGTTCGA+GGG - chr8_1:19769201-19769220 None:intergenic 50.0%
AAACGGTGAGTGAGTGTTCG+AGG - chr8_1:19769202-19769221 None:intergenic 50.0%
AGAGGTGAGACGGAAAACGA+CGG - chr8_1:19769270-19769289 None:intergenic 50.0%
GAAAAGACGGTGAGTCTGAG+AGG - chr8_1:19769288-19769307 None:intergenic 50.0%
TTGATTGCAGTCACCAGGAG+AGG + chr8_1:19769568-19769587 Msa1184170:intron 50.0%
!! GCATCGGTTGGATCGGATTT+AGG - chr8_1:19769666-19769685 None:intergenic 50.0%
! AGCAGAAGAGGAAGGTGCAT+CGG - chr8_1:19769682-19769701 None:intergenic 50.0%
CTGTGAAAGGTGAGTCTGAG+AGG - chr8_1:19769737-19769756 None:intergenic 50.0%
! ATAGGTTGGACAACTGAGCC+TGG + chr8_1:19769821-19769840 Msa1184170:intron 50.0%
!! CTAGTTCTGCTGCAGTGTTG+TGG + chr8_1:19770013-19770032 Msa1184170:intron 50.0%
! CTGCAGTGTTGTGGCGTTTT+GGG + chr8_1:19770022-19770041 Msa1184170:intron 50.0%
! CGGGTCTGTCTGTTCAGTTT+TGG + chr8_1:19770364-19770383 Msa1184170:intron 50.0%
!! AGTGTGGGTATTGGACACCA+AGG + chr8_1:19770514-19770533 Msa1184170:intron 50.0%
CAAGTGAAGCTGGAGGAAAC+GGG - chr8_1:19770589-19770608 None:intergenic 50.0%
ACACCTTCAAGTGAAGCTGG+AGG - chr8_1:19770596-19770615 None:intergenic 50.0%
TGGAACCATCCACCTCAATC+AGG + chr8_1:19770676-19770695 Msa1184170:intron 50.0%
GGAACCATCCACCTCAATCA+GGG + chr8_1:19770677-19770696 Msa1184170:intron 50.0%
TGAACCCTGATTGAGGTGGA+TGG - chr8_1:19770684-19770703 None:intergenic 50.0%
TCCACCTCAATCAGGGTTCA+AGG + chr8_1:19770684-19770703 Msa1184170:intron 50.0%
TCGACCTGATGCTCTTGTTC+AGG + chr8_1:19770787-19770806 Msa1184170:intron 50.0%
GGAAGCCCGAAGATCAAATG+CGG + chr8_1:19771057-19771076 Msa1184170:CDS 50.0%
TGTGGCCGCATTTGATCTTC+GGG - chr8_1:19771065-19771084 None:intergenic 50.0%
GTGTGGCCGCATTTGATCTT+CGG - chr8_1:19771066-19771085 None:intergenic 50.0%
ATCAAATGCGGCCACACACA+AGG + chr8_1:19771069-19771088 Msa1184170:CDS 50.0%
GGTTTGGCCTCACTTCCAAA+TGG + chr8_1:19771520-19771539 Msa1184170:intron 50.0%
! CAGCCAACCTTGCCATTTCT+GGG - chr8_1:19772038-19772057 None:intergenic 50.0%
! TCAGCCAACCTTGCCATTTC+TGG - chr8_1:19772039-19772058 None:intergenic 50.0%
AACGAGTGGAGGAACTCACA+TGG + chr8_1:19772224-19772243 Msa1184170:CDS 50.0%
AAAACTGCAGAACTCCCTGC+AGG + chr8_1:19772501-19772520 Msa1184170:CDS 50.0%
CTTTGCTCTGCATATCCTGC+AGG - chr8_1:19772519-19772538 None:intergenic 50.0%
CTCCTTTGCAAGCATGGAAG+TGG - chr8_1:19772551-19772570 None:intergenic 50.0%
AGGAATATTTGGGTGAGGGC+TGG + chr8_1:19772877-19772896 Msa1184170:intron 50.0%
!! CAGGGTTTCGTTTGGTGTGT+GGG + chr8_1:19773569-19773588 Msa1184170:intron 50.0%
ACGGTGAGTGAGTGTTCGAG+GGG - chr8_1:19769200-19769219 None:intergenic 55.0%
GGCGAGTGTGAGAGGTGATA+GGG - chr8_1:19769249-19769268 None:intergenic 55.0%
AAAACGACGGCGAGTGTGAG+AGG - chr8_1:19769257-19769276 None:intergenic 55.0%
GGTGAGTCTGAGAGGTGAGA+CGG - chr8_1:19769280-19769299 None:intergenic 55.0%
CGTCTTCTTCAGGGAAAGGC+TGG + chr8_1:19769419-19769438 Msa1184170:CDS 55.0%
TTGCAGTCACCAGGAGAGGT+TGG + chr8_1:19769572-19769591 Msa1184170:intron 55.0%
!! GGAAGGTGCATCGGTTGGAT+CGG - chr8_1:19769673-19769692 None:intergenic 55.0%
! GAAGAGGAAGGTGCATCGGT+TGG - chr8_1:19769678-19769697 None:intergenic 55.0%
! GCTGCAGTGTTGTGGCGTTT+TGG + chr8_1:19770021-19770040 Msa1184170:intron 55.0%
GCCTTGAACCCTGATTGAGG+TGG - chr8_1:19770688-19770707 None:intergenic 55.0%
GCGATACCGGATACAGTCAG+TGG + chr8_1:19771209-19771228 Msa1184170:CDS 55.0%
GTGAGGCCAAACCTTCACGT+TGG - chr8_1:19771513-19771532 None:intergenic 55.0%
!! GCAGGGTTTCGTTTGGTGTG+TGG + chr8_1:19773568-19773587 Msa1184170:intron 55.0%
CGGCGAGTGTGAGAGGTGAT+AGG - chr8_1:19769250-19769269 None:intergenic 60.0%
!! TAATCAGGAGGGCACCCCAG+AGG - chr8_1:19770757-19770776 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 19769146 19773870 19769146 ID=Msa1184170;Name=Msa1184170
chr8_1 mRNA 19769146 19773870 19769146 ID=Msa1184170-mRNA-1;Parent=Msa1184170;Name=Msa1184170-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.58|0.53|1|0.75|0.69|13|215|491
chr8_1 exon 19769146 19769450 19769146 ID=Msa1184170-mRNA-1:exon:7627;Parent=Msa1184170-mRNA-1
chr8_1 exon 19769578 19769707 19769578 ID=Msa1184170-mRNA-1:exon:7628;Parent=Msa1184170-mRNA-1
chr8_1 exon 19769825 19769862 19769825 ID=Msa1184170-mRNA-1:exon:7629;Parent=Msa1184170-mRNA-1
chr8_1 exon 19769950 19769957 19769950 ID=Msa1184170-mRNA-1:exon:7630;Parent=Msa1184170-mRNA-1
chr8_1 exon 19770217 19770366 19770217 ID=Msa1184170-mRNA-1:exon:7631;Parent=Msa1184170-mRNA-1
chr8_1 exon 19771005 19771090 19771005 ID=Msa1184170-mRNA-1:exon:7632;Parent=Msa1184170-mRNA-1
chr8_1 exon 19771197 19771283 19771197 ID=Msa1184170-mRNA-1:exon:7633;Parent=Msa1184170-mRNA-1
chr8_1 exon 19771445 19771520 19771445 ID=Msa1184170-mRNA-1:exon:7634;Parent=Msa1184170-mRNA-1
chr8_1 exon 19771768 19771880 19771768 ID=Msa1184170-mRNA-1:exon:7635;Parent=Msa1184170-mRNA-1
chr8_1 exon 19772016 19772101 19772016 ID=Msa1184170-mRNA-1:exon:7636;Parent=Msa1184170-mRNA-1
chr8_1 exon 19772183 19772273 19772183 ID=Msa1184170-mRNA-1:exon:7637;Parent=Msa1184170-mRNA-1
chr8_1 exon 19772466 19772687 19772466 ID=Msa1184170-mRNA-1:exon:7638;Parent=Msa1184170-mRNA-1
chr8_1 exon 19773572 19773870 19773572 ID=Msa1184170-mRNA-1:exon:7639;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19769146 19769450 19769146 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19769578 19769707 19769578 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19769825 19769862 19769825 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19769950 19769957 19769950 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19770217 19770366 19770217 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19771005 19771090 19771005 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19771197 19771283 19771197 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19771445 19771520 19771445 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19771768 19771880 19771768 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19772016 19772101 19772016 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19772183 19772273 19772183 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19772466 19772687 19772466 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 CDS 19773572 19773655 19773572 ID=Msa1184170-mRNA-1:cds;Parent=Msa1184170-mRNA-1
chr8_1 three_prime_UTR 19773656 19773870 19773656 ID=Msa1184170-mRNA-1:three_prime_utr;Parent=Msa1184170-mRNA-1
Gene Sequence

>Msa1184170

TTCTTTAGCCTCTCACAAAACACACAAATCTCAGATCTGTTTTTTTCATCTCCCCTCGAACACTCACTCACCGTTTCACCATCGTTTCACAGCTCGTTTTCCCTATCACCTCTCACACTCGCCGTCGTTTTCCGTCTCACCTCTCAGACTCACCGTCTTTTCACCCCTCACCATTTTAACGTTTGGAAAGCCGAACAAAAGCATAGCGCCGAAGAGAAAAACCTCGATGAACTTCGTAAACAGATTCAAGAAGAACGTGAACGTAGCGAGTTTCGTCTTCTTCAGGGAAAGGCTGGCCTCGTTTCTCACCAGGAGAGGTTGGAGTTTTTATACGATTCGGGATTATCCTTTGGTAAAACATCTGAAGGTTTCAAGGCACTTGAAGCTTTGCCTAAATCCGATCCAACCGATGCACCTTCCTCTTCTGCTTCTAAGGTTGGACAACTGAGCCTGGAGATACTAGATGTAGTTATGCAAACAGAGTTCTGGTGTGACAAATTGCAGGTGAGTTGTTTGTTGTTTTGTAAATTGGCGGGGTTTGGAATTTGGGTTATGTCAGATCAGCCTGCGATTCAGTTTTCGAGTCTTCAAAATTCGTATTTTAGTTTTGTTGCTTTGGAATGTTTGGCGGATAACAGCATTGGCAATTCGAAGCGGAATGGCTTATTACTTAAAGGAGGAAAGGAAGCCCGAAGATCAAATGCGGCCACACACAAGGTTGTAATTTCAGCGATACCGGATACAGTCAGTGGTAAACTTATTGGGCTTGTGACTTCAAGAGATGAAATTCCAGATCTACTCAAGGAGACTCTTCTTGTACACAAGGATCTGTCATGTAATGGTGGACTTAATGAGCTTATCCTTGAACTCCAACGTGAAGATGTTCAAATGTATGGTGGACCAAAAGCTAGTGCCGTGCTAAATATTGCTGAAGCGAGTTCTTTACATCACGAGTACAGCTCACTTACTTGCACAGTTGAAATTGTAGAGGACCTCCATTCTATGTTAGTTACCCAGAAATGGCAAGGTTGGCTGACGCAACACCGATCATTCTTCCAACCTAGAAAGGCTGAAGAAAGAGAAACTGGTGCACTTAAAGAAGCAAAGGATAAGCTTGAAAAACGAGTGGAGGAACTCACATGGCGCCTCCAACTAGAAAAAAGTTTAAGGACCAATCTAGAAGAATCTAAAGCACAAGAGATAGCAAAACTGCAGAACTCCCTGCAGGATATGCAGAGCAAAGTTGATGAAACCACTTCCATGCTTGCAAAGGAGCAAGAAAATGCAAAAAAATCCATTGAAGAAGCACCTCCTGTTATTCAAGAGACCCAGGTTATTGTTGAAGACACACAGAAGGTTGAATCACTAACAGCAGAAGTTGAGAGTTTAAAGGGTTTCGTTTGGTGTGTGGGATGCTATTATGTAGCAGAATTTTCTGGTTTTGGGGTATTGCAGCTGCAGATTAGTGGTTGTTAG

Protein sequence

>Msa1184170

FFSLSQNTQISDLFFSSPLEHSLTVSPSFHSSFSLSPLTLAVVFRLTSQTHRLFTPHHFNVWKAEQKHSAEEKNLDELRKQIQEERERSEFRLLQGKAGLVSHQERLEFLYDSGLSFGKTSEGFKALEALPKSDPTDAPSSSASKVGQLSLEILDVVMQTEFWCDKLQVSCLLFCKLAGFGIWVMSDQPAIQFSSLQNSYFSFVALECLADNSIGNSKRNGLLLKGGKEARRSNAATHKVVISAIPDTVSGKLIGLVTSRDEIPDLLKETLLVHKDLSCNGGLNELILELQREDVQMYGGPKASAVLNIAEASSLHHEYSSLTCTVEIVEDLHSMLVTQKWQGWLTQHRSFFQPRKAEERETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEIAKLQNSLQDMQSKVDETTSMLAKEQENAKKSIEEAPPVIQETQVIVEDTQKVESLTAEVESLKGFVWCVGCYYVAEFSGFGVLQLQISGC*