Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184970 | A0A392MKI9 | 51.754 | 342 | 79 | 5 | 1 | 330 | 8 | 275 | 4.62e-95 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0808010 | Msa1184970 | 0.802493 | 5.464353e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184970 | MtrunA17_Chr8g0348251 | 31.953 | 338 | 186 | 13 | 2 | 330 | 413 | 715 | 1.24e-25 | 107 |
| Msa1184970 | MtrunA17_Chr6g0474571 | 29.326 | 341 | 212 | 10 | 1 | 331 | 1673 | 1994 | 1.43e-24 | 105 |
| Msa1184970 | MtrunA17_Chr6g0474571 | 28.739 | 341 | 214 | 10 | 1 | 331 | 2193 | 2514 | 1.29e-21 | 96.3 |
| Msa1184970 | MtrunA17_Chr6g0474571 | 28.280 | 343 | 199 | 11 | 3 | 327 | 1155 | 1468 | 5.65e-17 | 82.4 |
| Msa1184970 | MtrunA17_Chr6g0474571 | 26.629 | 353 | 206 | 11 | 3 | 331 | 2715 | 3038 | 4.61e-13 | 70.5 |
| Msa1184970 | MtrunA17_Chr8g0348201 | 31.487 | 343 | 183 | 14 | 2 | 330 | 861 | 1165 | 1.88e-23 | 101 |
| Msa1184970 | MtrunA17_Chr8g0359891 | 31.922 | 307 | 165 | 11 | 3 | 295 | 195 | 471 | 3.60e-23 | 100 |
| Msa1184970 | MtrunA17_Chr8g0359891 | 30.030 | 333 | 190 | 11 | 2 | 321 | 2046 | 2348 | 8.72e-22 | 96.7 |
| Msa1184970 | MtrunA17_Chr8g0359891 | 28.667 | 300 | 188 | 9 | 3 | 295 | 1032 | 1312 | 1.27e-18 | 87.4 |
| Msa1184970 | MtrunA17_Chr8g0359891 | 29.305 | 331 | 194 | 11 | 17 | 331 | 1564 | 1870 | 2.23e-17 | 83.6 |
| Msa1184970 | MtrunA17_Chr8g0359891 | 27.647 | 340 | 210 | 10 | 3 | 331 | 2567 | 2881 | 5.50e-14 | 73.2 |
| Msa1184970 | MtrunA17_Chr1g0172051 | 29.904 | 311 | 169 | 10 | 3 | 295 | 1156 | 1435 | 3.64e-23 | 100 |
| Msa1184970 | MtrunA17_Chr1g0172051 | 29.412 | 306 | 180 | 12 | 1 | 295 | 1672 | 1952 | 2.60e-20 | 92.4 |
| Msa1184970 | MtrunA17_Chr1g0172051 | 27.778 | 342 | 190 | 16 | 1 | 321 | 2187 | 2492 | 1.09e-16 | 81.3 |
| Msa1184970 | MtrunA17_Chr1g0172051 | 25.575 | 348 | 212 | 9 | 3 | 331 | 2711 | 3030 | 3.24e-15 | 77.0 |
| Msa1184970 | MtrunA17_Chr1g0163991 | 30.065 | 306 | 172 | 10 | 3 | 295 | 899 | 1175 | 1.44e-22 | 99.0 |
| Msa1184970 | MtrunA17_Chr1g0163991 | 26.087 | 299 | 197 | 7 | 3 | 295 | 195 | 475 | 2.76e-18 | 86.3 |
| Msa1184970 | MtrunA17_Chr1g0172141 | 29.904 | 311 | 171 | 10 | 3 | 295 | 1157 | 1438 | 8.36e-22 | 96.7 |
| Msa1184970 | MtrunA17_Chr1g0172161 | 28.939 | 311 | 173 | 11 | 3 | 295 | 195 | 475 | 5.57e-21 | 93.6 |
| Msa1184970 | MtrunA17_Chr1g0167981 | 26.786 | 336 | 205 | 11 | 1 | 321 | 1671 | 1980 | 5.84e-21 | 94.4 |
| Msa1184970 | MtrunA17_Chr1g0167981 | 28.354 | 328 | 190 | 12 | 3 | 309 | 1152 | 1455 | 3.47e-18 | 85.9 |
| Msa1184970 | MtrunA17_Chr1g0167981 | 26.807 | 332 | 202 | 11 | 1 | 317 | 2196 | 2501 | 4.70e-17 | 82.4 |
| Msa1184970 | MtrunA17_Chr1g0167981 | 28.197 | 305 | 185 | 11 | 31 | 323 | 2744 | 3026 | 1.39e-12 | 68.9 |
| Msa1184970 | MtrunA17_Chr1g0164011 | 29.904 | 311 | 170 | 11 | 3 | 295 | 1157 | 1437 | 6.46e-21 | 94.0 |
| Msa1184970 | MtrunA17_Chr1g0164011 | 26.979 | 341 | 218 | 11 | 3 | 331 | 2119 | 2440 | 4.40e-13 | 70.5 |
| Msa1184970 | MtrunA17_Chr2g0323691 | 29.412 | 340 | 201 | 13 | 1 | 325 | 1673 | 1988 | 1.27e-20 | 93.2 |
| Msa1184970 | MtrunA17_Chr2g0323691 | 29.808 | 312 | 169 | 12 | 3 | 295 | 1156 | 1436 | 2.80e-20 | 92.0 |
| Msa1184970 | MtrunA17_Chr2g0323691 | 27.434 | 339 | 208 | 9 | 1 | 325 | 2193 | 2507 | 2.63e-18 | 86.3 |
| Msa1184970 | MtrunA17_Chr2g0323691 | 27.742 | 310 | 197 | 10 | 3 | 303 | 2714 | 3005 | 3.44e-14 | 73.9 |
| Msa1184970 | MtrunA17_Chr1g0163891 | 30.303 | 297 | 187 | 8 | 3 | 295 | 1169 | 1449 | 1.58e-20 | 92.8 |
| Msa1184970 | MtrunA17_Chr1g0163891 | 29.060 | 351 | 182 | 14 | 1 | 325 | 2206 | 2515 | 2.09e-20 | 92.4 |
| Msa1184970 | MtrunA17_Chr1g0163891 | 28.986 | 345 | 196 | 12 | 1 | 325 | 1686 | 2001 | 3.30e-19 | 89.0 |
| Msa1184970 | MtrunA17_Chr1g0163891 | 26.471 | 340 | 221 | 10 | 3 | 331 | 2730 | 3051 | 8.08e-15 | 75.9 |
| Msa1184970 | MtrunA17_Chr1g0163761 | 28.986 | 345 | 196 | 13 | 1 | 325 | 1675 | 1990 | 6.58e-18 | 85.1 |
| Msa1184970 | MtrunA17_Chr1g0163761 | 26.444 | 329 | 211 | 10 | 3 | 325 | 1158 | 1461 | 1.12e-16 | 81.3 |
| Msa1184970 | MtrunA17_Chr1g0163761 | 26.176 | 340 | 222 | 10 | 3 | 331 | 2197 | 2518 | 3.40e-13 | 70.9 |
| Msa1184970 | MtrunA17_Chr1g0174511 | 29.808 | 312 | 169 | 13 | 3 | 295 | 1153 | 1433 | 1.03e-17 | 84.3 |
| Msa1184970 | MtrunA17_Chr1g0163791 | 30.255 | 314 | 165 | 14 | 3 | 295 | 1153 | 1433 | 1.32e-17 | 84.0 |
| Msa1184970 | MtrunA17_Chr1g0170881 | 29.355 | 310 | 173 | 12 | 3 | 295 | 1154 | 1434 | 3.21e-17 | 83.2 |
| Msa1184970 | MtrunA17_Chr1g0170881 | 27.273 | 341 | 217 | 11 | 3 | 331 | 1673 | 1994 | 3.65e-14 | 73.9 |
| Msa1184970 | MtrunA17_Chr1g0172231 | 28.115 | 313 | 177 | 11 | 31 | 326 | 19 | 300 | 3.36e-17 | 82.8 |
| Msa1184970 | MtrunA17_Chr1g0172231 | 29.641 | 334 | 192 | 13 | 1 | 321 | 507 | 810 | 1.82e-15 | 77.8 |
| Msa1184970 | MtrunA17_Chr1g0172231 | 26.765 | 340 | 220 | 10 | 3 | 331 | 1029 | 1350 | 9.08e-14 | 72.4 |
| Msa1184970 | MtrunA17_Chr2g0313331 | 26.727 | 333 | 210 | 13 | 3 | 326 | 861 | 1168 | 9.37e-17 | 81.6 |
| Msa1184970 | MtrunA17_Chr1g0163931 | 27.647 | 340 | 193 | 13 | 3 | 325 | 1155 | 1458 | 3.84e-16 | 79.7 |
| Msa1184970 | MtrunA17_Chr1g0163931 | 26.149 | 348 | 209 | 10 | 3 | 331 | 1674 | 1992 | 5.21e-14 | 73.2 |
| Msa1184970 | MtrunA17_Chr4g0011631 | 28.528 | 326 | 193 | 9 | 2 | 325 | 37 | 324 | 9.52e-16 | 77.4 |
| Msa1184970 | MtrunA17_Chr1g0163801 | 26.786 | 336 | 215 | 12 | 8 | 331 | 71 | 387 | 3.02e-15 | 76.3 |
| Msa1184970 | MtrunA17_Chr2g0313541 | 25.959 | 339 | 216 | 10 | 1 | 330 | 1175 | 1487 | 4.12e-15 | 76.6 |
| Msa1184970 | MtrunA17_Chr4g0011661 | 28.146 | 302 | 177 | 10 | 2 | 303 | 37 | 298 | 8.74e-15 | 75.1 |
| Msa1184970 | MtrunA17_Chr1g0172101 | 28.571 | 266 | 145 | 9 | 46 | 295 | 7 | 243 | 1.27e-14 | 73.9 |
| Msa1184970 | MtrunA17_Chr2g0313591 | 25.150 | 334 | 218 | 9 | 3 | 328 | 1169 | 1478 | 3.70e-14 | 73.6 |
| Msa1184970 | MtrunA17_Chr2g0313311 | 26.163 | 344 | 198 | 12 | 3 | 326 | 1149 | 1456 | 4.10e-13 | 70.5 |
| Msa1184970 | MtrunA17_Chr2g0313491 | 27.434 | 339 | 208 | 10 | 3 | 330 | 1134 | 1445 | 6.01e-12 | 67.0 |
| Msa1184970 | MtrunA17_Chr2g0314301 | 25.225 | 333 | 215 | 11 | 3 | 326 | 1179 | 1486 | 4.33e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCAAGTTTATTTAAATT+TGG | 0.155973 | 8_1:-21262704 | None:intergenic |
| TACTCTCGGATCCAAGAAAA+AGG | 0.203039 | 8_1:-21262502 | None:intergenic |
| CATCTCATCGCAGGATTCTA+TGG | 0.260296 | 8_1:-21262235 | None:intergenic |
| CGTTGAAGGCGGGGCATTCC+AGG | 0.289620 | 8_1:-21262383 | None:intergenic |
| TGCTCCAACCATTACAATTC+AGG | 0.303238 | 8_1:-21262724 | None:intergenic |
| AGACGCAGCGAGGTTAAATA+AGG | 0.303827 | 8_1:-21262315 | None:intergenic |
| GGGCAAGTTTATTTAAATTT+GGG | 0.315924 | 8_1:-21262703 | None:intergenic |
| ATCCCTCTGACCCAACAAAT+TGG | 0.317937 | 8_1:-21262923 | None:intergenic |
| CTTCTCCTGTCTAAAAGAAT+TGG | 0.331064 | 8_1:+21263043 | Msa1184970:CDS |
| TCTAAATTCTTTATCAAGCC+TGG | 0.355721 | 8_1:+21263232 | Msa1184970:CDS |
| TGCCAGAATAAAAGCATTCC+AGG | 0.377149 | 8_1:-21263250 | None:intergenic |
| CACCATCTCTTCACCAATGC+TGG | 0.388831 | 8_1:-21262856 | None:intergenic |
| GGGTAAAAGAAAGTAAGTTT+TGG | 0.390164 | 8_1:-21262348 | None:intergenic |
| GACAACTGAAAACAATTAGT+TGG | 0.399854 | 8_1:-21262980 | None:intergenic |
| GGTTGGAAATGGCCTGATAA+AGG | 0.425797 | 8_1:-21262613 | None:intergenic |
| CATTCCAGGGTGAATGATCC+AGG | 0.429299 | 8_1:-21262369 | None:intergenic |
| ATACCTAATCTCCAATTTGT+TGG | 0.432660 | 8_1:+21262912 | Msa1184970:CDS |
| TACCTAATCTCCAATTTGTT+GGG | 0.436452 | 8_1:+21262913 | Msa1184970:CDS |
| GAATCCTGCGATGAGATGTT+AGG | 0.447301 | 8_1:+21262240 | Msa1184970:CDS |
| TAATACAATGACAAGGATAG+TGG | 0.450956 | 8_1:+21263157 | Msa1184970:CDS |
| CTCCAATTTGTTGGGTCAGA+GGG | 0.454140 | 8_1:+21262921 | Msa1184970:CDS |
| TACAGTTCTTTCCTTACACT+TGG | 0.461475 | 8_1:+21262581 | Msa1184970:intron |
| GACCCAACAAATTGGAGATT+AGG | 0.461855 | 8_1:-21262915 | None:intergenic |
| TAACACCTCCAGGTTGGAAA+TGG | 0.462025 | 8_1:-21262624 | None:intergenic |
| GGTAAAACAAACCAAGTGTA+AGG | 0.466388 | 8_1:-21262592 | None:intergenic |
| ACTGTTAATGCGTTGAAGGC+GGG | 0.471395 | 8_1:-21262393 | None:intergenic |
| AGAGATGGTGCTTGGACACT+TGG | 0.473427 | 8_1:+21262869 | Msa1184970:CDS |
| AGTATTTCAAAGAGAAAACT+TGG | 0.479006 | 8_1:-21262761 | None:intergenic |
| GATGAGATGTTAGGAATTGT+TGG | 0.500821 | 8_1:+21262249 | Msa1184970:CDS |
| CTCAATCAAAACTCCAGCAT+TGG | 0.503366 | 8_1:+21262843 | Msa1184970:CDS |
| ATAATCCAGTCCTTGACATT+CGG | 0.508297 | 8_1:-21263072 | None:intergenic |
| AATCGAGTGCTAACACCTCC+AGG | 0.514389 | 8_1:-21262634 | None:intergenic |
| TTATCAGGCCATTTCCAACC+TGG | 0.514702 | 8_1:+21262616 | Msa1184970:CDS |
| GCTCCAACCATTACAATTCA+GGG | 0.516724 | 8_1:-21262723 | None:intergenic |
| AAACTTGCCCTGAATTGTAA+TGG | 0.523262 | 8_1:+21262716 | Msa1184970:CDS |
| TCAAACTTGAGCAGCTAGGA+TGG | 0.528532 | 8_1:+21263204 | Msa1184970:CDS |
| TGGAGGTGTTAGCACTCGAT+TGG | 0.529050 | 8_1:+21262636 | Msa1184970:CDS |
| AATGACAAGGATAGTGGAAA+GGG | 0.533757 | 8_1:+21263163 | Msa1184970:CDS |
| CTCCAGCATTGGTGAAGAGA+TGG | 0.537884 | 8_1:+21262854 | Msa1184970:CDS |
| ATTGTTGGAAAAGAAACTGC+TGG | 0.541145 | 8_1:+21262264 | Msa1184970:CDS |
| ATACACTGTTAATGCGTTGA+AGG | 0.543906 | 8_1:-21262397 | None:intergenic |
| TATTACCGAATGTCAAGGAC+TGG | 0.546679 | 8_1:+21263067 | Msa1184970:CDS |
| GAGGTCAAACTTGAGCAGCT+AGG | 0.552110 | 8_1:+21263200 | Msa1184970:CDS |
| GACGCAGCGAGGTTAAATAA+GGG | 0.556418 | 8_1:-21262314 | None:intergenic |
| CAAGTTTATTTAAATTTGGG+AGG | 0.557064 | 8_1:-21262700 | None:intergenic |
| GAGAAGGATACAGAAGAAGC+AGG | 0.562360 | 8_1:-21263026 | None:intergenic |
| CTGTTAATGCGTTGAAGGCG+GGG | 0.564626 | 8_1:-21262392 | None:intergenic |
| CACTGTTAATGCGTTGAAGG+CGG | 0.565398 | 8_1:-21262394 | None:intergenic |
| TCTCCAATTTGTTGGGTCAG+AGG | 0.565614 | 8_1:+21262920 | Msa1184970:CDS |
| GGTGTTAGCACTCGATTGGA+AGG | 0.577223 | 8_1:+21262640 | Msa1184970:CDS |
| AATTCCTAACATCTCATCGC+AGG | 0.578471 | 8_1:-21262244 | None:intergenic |
| GTTTCAAAGTGCATATCTTG+AGG | 0.581485 | 8_1:+21262440 | Msa1184970:CDS |
| CAATGACAAGGATAGTGGAA+AGG | 0.582283 | 8_1:+21263162 | Msa1184970:CDS |
| TTGCCCTGAATTGTAATGGT+TGG | 0.583412 | 8_1:+21262720 | Msa1184970:CDS |
| GTTGAAGGCGGGGCATTCCA+GGG | 0.584054 | 8_1:-21262382 | None:intergenic |
| ATTGGTGAAGAGATGGTGCT+TGG | 0.608197 | 8_1:+21262861 | Msa1184970:CDS |
| TATCTTGAGGATGATACTGA+AGG | 0.614362 | 8_1:+21262453 | Msa1184970:CDS |
| AAGGGACGACACTTCAGAAG+AGG | 0.627987 | 8_1:+21263181 | Msa1184970:CDS |
| TTGGATATTACCGAATGTCA+AGG | 0.639183 | 8_1:+21263062 | Msa1184970:CDS |
| GAGTGCTAACACCTCCAGGT+TGG | 0.639214 | 8_1:-21262630 | None:intergenic |
| TTAAAATCTGATGAAGCTCG+AGG | 0.639324 | 8_1:+21262206 | None:intergenic |
| TCAGGCCATTTCCAACCTGG+AGG | 0.651160 | 8_1:+21262619 | Msa1184970:CDS |
| TTACCCTGGATCATTCACCC+TGG | 0.651191 | 8_1:+21262365 | Msa1184970:CDS |
| TCTTGACTTTGATCTCCACA+AGG | 0.662713 | 8_1:-21263130 | None:intergenic |
| AAATAAGTTGATGTACCTTG+TGG | 0.663835 | 8_1:+21263115 | Msa1184970:CDS |
| ATTCCAGGGTGAATGATCCA+GGG | 0.681764 | 8_1:-21262368 | None:intergenic |
| AAAACTAATAAGACGCAGCG+AGG | 0.706953 | 8_1:-21262325 | None:intergenic |
| AGAATTGTAATACAATGACA+AGG | 0.712973 | 8_1:+21263150 | Msa1184970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTTTATGTTTCTTACTCT+CGG | - | chr8_1:21262519-21262538 | None:intergenic | 25.0% |
| ! | CAAGTTTATTTAAATTTGGG+AGG | - | chr8_1:21262703-21262722 | None:intergenic | 25.0% |
| ! | GGGCAAGTTTATTTAAATTT+GGG | - | chr8_1:21262706-21262725 | None:intergenic | 25.0% |
| ! | AGGGCAAGTTTATTTAAATT+TGG | - | chr8_1:21262707-21262726 | None:intergenic | 25.0% |
| ! | AGTATTTCAAAGAGAAAACT+TGG | - | chr8_1:21262764-21262783 | None:intergenic | 25.0% |
| !! | AATATCCAATTCTTTTAGAC+AGG | - | chr8_1:21263051-21263070 | None:intergenic | 25.0% |
| ! | AGAATTGTAATACAATGACA+AGG | + | chr8_1:21263150-21263169 | Msa1184970:CDS | 25.0% |
| !! | GATTTTATGTTTCTTACTCT+CGG | - | chr8_1:21262519-21262538 | None:intergenic | 25.0% |
| ! | CAAGTTTATTTAAATTTGGG+AGG | - | chr8_1:21262703-21262722 | None:intergenic | 25.0% |
| ! | GGGCAAGTTTATTTAAATTT+GGG | - | chr8_1:21262706-21262725 | None:intergenic | 25.0% |
| ! | AGGGCAAGTTTATTTAAATT+TGG | - | chr8_1:21262707-21262726 | None:intergenic | 25.0% |
| ! | AGTATTTCAAAGAGAAAACT+TGG | - | chr8_1:21262764-21262783 | None:intergenic | 25.0% |
| !! | AATATCCAATTCTTTTAGAC+AGG | - | chr8_1:21263051-21263070 | None:intergenic | 25.0% |
| ! | AGAATTGTAATACAATGACA+AGG | + | chr8_1:21263150-21263169 | Msa1184970:CDS | 25.0% |
| ! | GGGTAAAAGAAAGTAAGTTT+TGG | - | chr8_1:21262351-21262370 | None:intergenic | 30.0% |
| ! | AAACTTACTTTCTTTTACCC+TGG | + | chr8_1:21262351-21262370 | Msa1184970:CDS | 30.0% |
| ! | TTACAAACAACCCTTTTTCT+TGG | + | chr8_1:21262491-21262510 | Msa1184970:CDS | 30.0% |
| !!! | TGGTTTGTTTTACCTTTATC+AGG | + | chr8_1:21262601-21262620 | Msa1184970:CDS | 30.0% |
| ATACCTAATCTCCAATTTGT+TGG | + | chr8_1:21262912-21262931 | Msa1184970:CDS | 30.0% | |
| ! | TACCTAATCTCCAATTTGTT+GGG | + | chr8_1:21262913-21262932 | Msa1184970:CDS | 30.0% |
| GACAACTGAAAACAATTAGT+TGG | - | chr8_1:21262983-21263002 | None:intergenic | 30.0% | |
| !! | AAATAAGTTGATGTACCTTG+TGG | + | chr8_1:21263115-21263134 | Msa1184970:CDS | 30.0% |
| TAATACAATGACAAGGATAG+TGG | + | chr8_1:21263157-21263176 | Msa1184970:CDS | 30.0% | |
| TCTAAATTCTTTATCAAGCC+TGG | + | chr8_1:21263232-21263251 | Msa1184970:CDS | 30.0% | |
| ! | GGGTAAAAGAAAGTAAGTTT+TGG | - | chr8_1:21262351-21262370 | None:intergenic | 30.0% |
| ! | AAACTTACTTTCTTTTACCC+TGG | + | chr8_1:21262351-21262370 | Msa1184970:CDS | 30.0% |
| ! | TTACAAACAACCCTTTTTCT+TGG | + | chr8_1:21262491-21262510 | Msa1184970:CDS | 30.0% |
| !!! | TGGTTTGTTTTACCTTTATC+AGG | + | chr8_1:21262601-21262620 | Msa1184970:CDS | 30.0% |
| ATACCTAATCTCCAATTTGT+TGG | + | chr8_1:21262912-21262931 | Msa1184970:CDS | 30.0% | |
| ! | TACCTAATCTCCAATTTGTT+GGG | + | chr8_1:21262913-21262932 | Msa1184970:CDS | 30.0% |
| GACAACTGAAAACAATTAGT+TGG | - | chr8_1:21262983-21263002 | None:intergenic | 30.0% | |
| !! | AAATAAGTTGATGTACCTTG+TGG | + | chr8_1:21263115-21263134 | Msa1184970:CDS | 30.0% |
| TAATACAATGACAAGGATAG+TGG | + | chr8_1:21263157-21263176 | Msa1184970:CDS | 30.0% | |
| TCTAAATTCTTTATCAAGCC+TGG | + | chr8_1:21263232-21263251 | Msa1184970:CDS | 30.0% | |
| GATGAGATGTTAGGAATTGT+TGG | + | chr8_1:21262249-21262268 | Msa1184970:CDS | 35.0% | |
| ATTGTTGGAAAAGAAACTGC+TGG | + | chr8_1:21262264-21262283 | Msa1184970:CDS | 35.0% | |
| ATACACTGTTAATGCGTTGA+AGG | - | chr8_1:21262400-21262419 | None:intergenic | 35.0% | |
| GTTTCAAAGTGCATATCTTG+AGG | + | chr8_1:21262440-21262459 | Msa1184970:CDS | 35.0% | |
| TATCTTGAGGATGATACTGA+AGG | + | chr8_1:21262453-21262472 | Msa1184970:CDS | 35.0% | |
| TACAGTTCTTTCCTTACACT+TGG | + | chr8_1:21262581-21262600 | Msa1184970:intron | 35.0% | |
| GGTAAAACAAACCAAGTGTA+AGG | - | chr8_1:21262595-21262614 | None:intergenic | 35.0% | |
| AAACTTGCCCTGAATTGTAA+TGG | + | chr8_1:21262716-21262735 | Msa1184970:CDS | 35.0% | |
| !!! | TTTTGATTGAGGAGTATCTC+AGG | - | chr8_1:21262834-21262853 | None:intergenic | 35.0% |
| ! | CAATTCTTTTAGACAGGAGA+AGG | - | chr8_1:21263045-21263064 | None:intergenic | 35.0% |
| CTTCTCCTGTCTAAAAGAAT+TGG | + | chr8_1:21263043-21263062 | Msa1184970:CDS | 35.0% | |
| TTGGATATTACCGAATGTCA+AGG | + | chr8_1:21263062-21263081 | Msa1184970:CDS | 35.0% | |
| ATAATCCAGTCCTTGACATT+CGG | - | chr8_1:21263075-21263094 | None:intergenic | 35.0% | |
| !! | AATGACAAGGATAGTGGAAA+GGG | + | chr8_1:21263163-21263182 | Msa1184970:CDS | 35.0% |
| GATGAGATGTTAGGAATTGT+TGG | + | chr8_1:21262249-21262268 | Msa1184970:CDS | 35.0% | |
| ATTGTTGGAAAAGAAACTGC+TGG | + | chr8_1:21262264-21262283 | Msa1184970:CDS | 35.0% | |
| ATACACTGTTAATGCGTTGA+AGG | - | chr8_1:21262400-21262419 | None:intergenic | 35.0% | |
| GTTTCAAAGTGCATATCTTG+AGG | + | chr8_1:21262440-21262459 | Msa1184970:CDS | 35.0% | |
| TATCTTGAGGATGATACTGA+AGG | + | chr8_1:21262453-21262472 | Msa1184970:CDS | 35.0% | |
| TACAGTTCTTTCCTTACACT+TGG | + | chr8_1:21262581-21262600 | Msa1184970:intron | 35.0% | |
| GGTAAAACAAACCAAGTGTA+AGG | - | chr8_1:21262595-21262614 | None:intergenic | 35.0% | |
| AAACTTGCCCTGAATTGTAA+TGG | + | chr8_1:21262716-21262735 | Msa1184970:CDS | 35.0% | |
| !!! | TTTTGATTGAGGAGTATCTC+AGG | - | chr8_1:21262834-21262853 | None:intergenic | 35.0% |
| ! | CAATTCTTTTAGACAGGAGA+AGG | - | chr8_1:21263045-21263064 | None:intergenic | 35.0% |
| CTTCTCCTGTCTAAAAGAAT+TGG | + | chr8_1:21263043-21263062 | Msa1184970:CDS | 35.0% | |
| TTGGATATTACCGAATGTCA+AGG | + | chr8_1:21263062-21263081 | Msa1184970:CDS | 35.0% | |
| ATAATCCAGTCCTTGACATT+CGG | - | chr8_1:21263075-21263094 | None:intergenic | 35.0% | |
| !! | AATGACAAGGATAGTGGAAA+GGG | + | chr8_1:21263163-21263182 | Msa1184970:CDS | 35.0% |
| AATTCCTAACATCTCATCGC+AGG | - | chr8_1:21262247-21262266 | None:intergenic | 40.0% | |
| AAAACTAATAAGACGCAGCG+AGG | - | chr8_1:21262328-21262347 | None:intergenic | 40.0% | |
| ACTCTCGGATCCAAGAAAAA+GGG | - | chr8_1:21262504-21262523 | None:intergenic | 40.0% | |
| TACTCTCGGATCCAAGAAAA+AGG | - | chr8_1:21262505-21262524 | None:intergenic | 40.0% | |
| TTGCCCTGAATTGTAATGGT+TGG | + | chr8_1:21262720-21262739 | Msa1184970:CDS | 40.0% | |
| GCTCCAACCATTACAATTCA+GGG | - | chr8_1:21262726-21262745 | None:intergenic | 40.0% | |
| TGCTCCAACCATTACAATTC+AGG | - | chr8_1:21262727-21262746 | None:intergenic | 40.0% | |
| !!! | CAATGCTGGAGTTTTGATTG+AGG | - | chr8_1:21262845-21262864 | None:intergenic | 40.0% |
| CTCAATCAAAACTCCAGCAT+TGG | + | chr8_1:21262843-21262862 | Msa1184970:CDS | 40.0% | |
| GACCCAACAAATTGGAGATT+AGG | - | chr8_1:21262918-21262937 | None:intergenic | 40.0% | |
| TATTACCGAATGTCAAGGAC+TGG | + | chr8_1:21263067-21263086 | Msa1184970:CDS | 40.0% | |
| TCTTGACTTTGATCTCCACA+AGG | - | chr8_1:21263133-21263152 | None:intergenic | 40.0% | |
| !! | CAATGACAAGGATAGTGGAA+AGG | + | chr8_1:21263162-21263181 | Msa1184970:CDS | 40.0% |
| ! | AGCCTGGAATGCTTTTATTC+TGG | + | chr8_1:21263248-21263267 | Msa1184970:CDS | 40.0% |
| !! | TGCCAGAATAAAAGCATTCC+AGG | - | chr8_1:21263253-21263272 | None:intergenic | 40.0% |
| AATTCCTAACATCTCATCGC+AGG | - | chr8_1:21262247-21262266 | None:intergenic | 40.0% | |
| AAAACTAATAAGACGCAGCG+AGG | - | chr8_1:21262328-21262347 | None:intergenic | 40.0% | |
| ACTCTCGGATCCAAGAAAAA+GGG | - | chr8_1:21262504-21262523 | None:intergenic | 40.0% | |
| TACTCTCGGATCCAAGAAAA+AGG | - | chr8_1:21262505-21262524 | None:intergenic | 40.0% | |
| TTGCCCTGAATTGTAATGGT+TGG | + | chr8_1:21262720-21262739 | Msa1184970:CDS | 40.0% | |
| GCTCCAACCATTACAATTCA+GGG | - | chr8_1:21262726-21262745 | None:intergenic | 40.0% | |
| TGCTCCAACCATTACAATTC+AGG | - | chr8_1:21262727-21262746 | None:intergenic | 40.0% | |
| !!! | CAATGCTGGAGTTTTGATTG+AGG | - | chr8_1:21262845-21262864 | None:intergenic | 40.0% |
| CTCAATCAAAACTCCAGCAT+TGG | + | chr8_1:21262843-21262862 | Msa1184970:CDS | 40.0% | |
| GACCCAACAAATTGGAGATT+AGG | - | chr8_1:21262918-21262937 | None:intergenic | 40.0% | |
| TATTACCGAATGTCAAGGAC+TGG | + | chr8_1:21263067-21263086 | Msa1184970:CDS | 40.0% | |
| TCTTGACTTTGATCTCCACA+AGG | - | chr8_1:21263133-21263152 | None:intergenic | 40.0% | |
| !! | CAATGACAAGGATAGTGGAA+AGG | + | chr8_1:21263162-21263181 | Msa1184970:CDS | 40.0% |
| ! | AGCCTGGAATGCTTTTATTC+TGG | + | chr8_1:21263248-21263267 | Msa1184970:CDS | 40.0% |
| !! | TGCCAGAATAAAAGCATTCC+AGG | - | chr8_1:21263253-21263272 | None:intergenic | 40.0% |
| CATCTCATCGCAGGATTCTA+TGG | - | chr8_1:21262238-21262257 | None:intergenic | 45.0% | |
| GAATCCTGCGATGAGATGTT+AGG | + | chr8_1:21262240-21262259 | Msa1184970:CDS | 45.0% | |
| GACGCAGCGAGGTTAAATAA+GGG | - | chr8_1:21262317-21262336 | None:intergenic | 45.0% | |
| AGACGCAGCGAGGTTAAATA+AGG | - | chr8_1:21262318-21262337 | None:intergenic | 45.0% | |
| ATTCCAGGGTGAATGATCCA+GGG | - | chr8_1:21262371-21262390 | None:intergenic | 45.0% | |
| ACTGTTAATGCGTTGAAGGC+GGG | - | chr8_1:21262396-21262415 | None:intergenic | 45.0% | |
| CACTGTTAATGCGTTGAAGG+CGG | - | chr8_1:21262397-21262416 | None:intergenic | 45.0% | |
| GGTTGGAAATGGCCTGATAA+AGG | - | chr8_1:21262616-21262635 | None:intergenic | 45.0% | |
| TTATCAGGCCATTTCCAACC+TGG | + | chr8_1:21262616-21262635 | Msa1184970:CDS | 45.0% | |
| ! | TAACACCTCCAGGTTGGAAA+TGG | - | chr8_1:21262627-21262646 | None:intergenic | 45.0% |
| ATTGGTGAAGAGATGGTGCT+TGG | + | chr8_1:21262861-21262880 | Msa1184970:CDS | 45.0% | |
| !! | TCTCCAATTTGTTGGGTCAG+AGG | + | chr8_1:21262920-21262939 | Msa1184970:CDS | 45.0% |
| !! | CTCCAATTTGTTGGGTCAGA+GGG | + | chr8_1:21262921-21262940 | Msa1184970:CDS | 45.0% |
| ATCCCTCTGACCCAACAAAT+TGG | - | chr8_1:21262926-21262945 | None:intergenic | 45.0% | |
| GAGAAGGATACAGAAGAAGC+AGG | - | chr8_1:21263029-21263048 | None:intergenic | 45.0% | |
| TCAAACTTGAGCAGCTAGGA+TGG | + | chr8_1:21263204-21263223 | Msa1184970:CDS | 45.0% | |
| CATCTCATCGCAGGATTCTA+TGG | - | chr8_1:21262238-21262257 | None:intergenic | 45.0% | |
| GAATCCTGCGATGAGATGTT+AGG | + | chr8_1:21262240-21262259 | Msa1184970:CDS | 45.0% | |
| GACGCAGCGAGGTTAAATAA+GGG | - | chr8_1:21262317-21262336 | None:intergenic | 45.0% | |
| AGACGCAGCGAGGTTAAATA+AGG | - | chr8_1:21262318-21262337 | None:intergenic | 45.0% | |
| ATTCCAGGGTGAATGATCCA+GGG | - | chr8_1:21262371-21262390 | None:intergenic | 45.0% | |
| ACTGTTAATGCGTTGAAGGC+GGG | - | chr8_1:21262396-21262415 | None:intergenic | 45.0% | |
| CACTGTTAATGCGTTGAAGG+CGG | - | chr8_1:21262397-21262416 | None:intergenic | 45.0% | |
| GGTTGGAAATGGCCTGATAA+AGG | - | chr8_1:21262616-21262635 | None:intergenic | 45.0% | |
| TTATCAGGCCATTTCCAACC+TGG | + | chr8_1:21262616-21262635 | Msa1184970:CDS | 45.0% | |
| ! | TAACACCTCCAGGTTGGAAA+TGG | - | chr8_1:21262627-21262646 | None:intergenic | 45.0% |
| ATTGGTGAAGAGATGGTGCT+TGG | + | chr8_1:21262861-21262880 | Msa1184970:CDS | 45.0% | |
| !! | TCTCCAATTTGTTGGGTCAG+AGG | + | chr8_1:21262920-21262939 | Msa1184970:CDS | 45.0% |
| !! | CTCCAATTTGTTGGGTCAGA+GGG | + | chr8_1:21262921-21262940 | Msa1184970:CDS | 45.0% |
| ATCCCTCTGACCCAACAAAT+TGG | - | chr8_1:21262926-21262945 | None:intergenic | 45.0% | |
| GAGAAGGATACAGAAGAAGC+AGG | - | chr8_1:21263029-21263048 | None:intergenic | 45.0% | |
| TCAAACTTGAGCAGCTAGGA+TGG | + | chr8_1:21263204-21263223 | Msa1184970:CDS | 45.0% | |
| TTACCCTGGATCATTCACCC+TGG | + | chr8_1:21262365-21262384 | Msa1184970:CDS | 50.0% | |
| CATTCCAGGGTGAATGATCC+AGG | - | chr8_1:21262372-21262391 | None:intergenic | 50.0% | |
| CTGTTAATGCGTTGAAGGCG+GGG | - | chr8_1:21262395-21262414 | None:intergenic | 50.0% | |
| AATCGAGTGCTAACACCTCC+AGG | - | chr8_1:21262637-21262656 | None:intergenic | 50.0% | |
| !! | TGGAGGTGTTAGCACTCGAT+TGG | + | chr8_1:21262636-21262655 | Msa1184970:CDS | 50.0% |
| GGTGTTAGCACTCGATTGGA+AGG | + | chr8_1:21262640-21262659 | Msa1184970:CDS | 50.0% | |
| !! | CTCCAGCATTGGTGAAGAGA+TGG | + | chr8_1:21262854-21262873 | Msa1184970:CDS | 50.0% |
| CACCATCTCTTCACCAATGC+TGG | - | chr8_1:21262859-21262878 | None:intergenic | 50.0% | |
| AGAGATGGTGCTTGGACACT+TGG | + | chr8_1:21262869-21262888 | Msa1184970:CDS | 50.0% | |
| AAGGGACGACACTTCAGAAG+AGG | + | chr8_1:21263181-21263200 | Msa1184970:CDS | 50.0% | |
| GAGGTCAAACTTGAGCAGCT+AGG | + | chr8_1:21263200-21263219 | Msa1184970:CDS | 50.0% | |
| TTACCCTGGATCATTCACCC+TGG | + | chr8_1:21262365-21262384 | Msa1184970:CDS | 50.0% | |
| CATTCCAGGGTGAATGATCC+AGG | - | chr8_1:21262372-21262391 | None:intergenic | 50.0% | |
| CTGTTAATGCGTTGAAGGCG+GGG | - | chr8_1:21262395-21262414 | None:intergenic | 50.0% | |
| AATCGAGTGCTAACACCTCC+AGG | - | chr8_1:21262637-21262656 | None:intergenic | 50.0% | |
| !! | TGGAGGTGTTAGCACTCGAT+TGG | + | chr8_1:21262636-21262655 | Msa1184970:CDS | 50.0% |
| GGTGTTAGCACTCGATTGGA+AGG | + | chr8_1:21262640-21262659 | Msa1184970:CDS | 50.0% | |
| !! | CTCCAGCATTGGTGAAGAGA+TGG | + | chr8_1:21262854-21262873 | Msa1184970:CDS | 50.0% |
| CACCATCTCTTCACCAATGC+TGG | - | chr8_1:21262859-21262878 | None:intergenic | 50.0% | |
| AGAGATGGTGCTTGGACACT+TGG | + | chr8_1:21262869-21262888 | Msa1184970:CDS | 50.0% | |
| AAGGGACGACACTTCAGAAG+AGG | + | chr8_1:21263181-21263200 | Msa1184970:CDS | 50.0% | |
| GAGGTCAAACTTGAGCAGCT+AGG | + | chr8_1:21263200-21263219 | Msa1184970:CDS | 50.0% | |
| TCAGGCCATTTCCAACCTGG+AGG | + | chr8_1:21262619-21262638 | Msa1184970:CDS | 55.0% | |
| GAGTGCTAACACCTCCAGGT+TGG | - | chr8_1:21262633-21262652 | None:intergenic | 55.0% | |
| TCAGGCCATTTCCAACCTGG+AGG | + | chr8_1:21262619-21262638 | Msa1184970:CDS | 55.0% | |
| GAGTGCTAACACCTCCAGGT+TGG | - | chr8_1:21262633-21262652 | None:intergenic | 55.0% | |
| ! | GTTGAAGGCGGGGCATTCCA+GGG | - | chr8_1:21262385-21262404 | None:intergenic | 60.0% |
| ! | GTTGAAGGCGGGGCATTCCA+GGG | - | chr8_1:21262385-21262404 | None:intergenic | 60.0% |
| ! | CGTTGAAGGCGGGGCATTCC+AGG | - | chr8_1:21262386-21262405 | None:intergenic | 65.0% |
| ! | CGTTGAAGGCGGGGCATTCC+AGG | - | chr8_1:21262386-21262405 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 21262216 | 21263289 | 21262216 | ID=Msa1184970;Name=Msa1184970 |
| chr8_1 | mRNA | 21262216 | 21263289 | 21262216 | ID=Msa1184970-mRNA-1;Parent=Msa1184970;Name=Msa1184970-mRNA-1;_AED=0.22;_eAED=0.40;_QI=0|0|0|1|0|0|4|0|331 |
| chr8_1 | exon | 21262216 | 21262413 | 21262216 | ID=Msa1184970-mRNA-1:exon:8100;Parent=Msa1184970-mRNA-1 |
| chr8_1 | exon | 21262432 | 21262541 | 21262432 | ID=Msa1184970-mRNA-1:exon:8101;Parent=Msa1184970-mRNA-1 |
| chr8_1 | exon | 21262586 | 21262810 | 21262586 | ID=Msa1184970-mRNA-1:exon:8102;Parent=Msa1184970-mRNA-1 |
| chr8_1 | exon | 21262827 | 21263289 | 21262827 | ID=Msa1184970-mRNA-1:exon:8103;Parent=Msa1184970-mRNA-1 |
| chr8_1 | CDS | 21262216 | 21262413 | 21262216 | ID=Msa1184970-mRNA-1:cds;Parent=Msa1184970-mRNA-1 |
| chr8_1 | CDS | 21262432 | 21262541 | 21262432 | ID=Msa1184970-mRNA-1:cds;Parent=Msa1184970-mRNA-1 |
| chr8_1 | CDS | 21262586 | 21262810 | 21262586 | ID=Msa1184970-mRNA-1:cds;Parent=Msa1184970-mRNA-1 |
| chr8_1 | CDS | 21262827 | 21263289 | 21262827 | ID=Msa1184970-mRNA-1:cds;Parent=Msa1184970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
