AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0808010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808010 MtrunA17_Chr5g0422921 83.582 134 15 2 40 166 683 816 9.90e-65 211
Msa0808010 MtrunA17_Chr5g0422921 88.235 34 4 0 7 40 553 586 4.69e-14 68.9
Msa0808010 MtrunA17_Chr5g0428101 68.182 132 32 2 40 166 686 812 1.25e-54 184
Msa0808010 MtrunA17_Chr5g0428101 73.529 34 9 0 7 40 556 589 1.72e-11 61.6
Msa0808010 MtrunA17_Chr3g0092301 62.406 133 44 2 40 166 115 247 2.78e-51 164
Msa0808010 MtrunA17_Chr5g0428111 64.662 133 41 2 40 166 688 820 4.22e-50 171
Msa0808010 MtrunA17_Chr5g0428111 76.471 34 8 0 7 40 558 591 1.89e-12 64.3
Msa0808010 MtrunA17_Chr3g0093161 60.448 134 46 2 40 166 682 815 1.59e-45 159
Msa0808010 MtrunA17_Chr3g0093161 47.727 88 34 3 7 88 552 633 2.44e-12 63.9
Msa0808010 MtrunA17_Chr3g0078541 60.606 132 46 3 40 166 715 845 1.58e-43 153
Msa0808010 MtrunA17_Chr3g0078541 73.529 34 9 0 7 40 585 618 2.60e-12 63.9
Msa0808010 MtrunA17_Chr3g0078551 57.463 134 50 3 40 166 709 842 3.09e-41 146
Msa0808010 MtrunA17_Chr3g0078551 79.412 34 7 0 7 40 579 612 1.86e-12 64.3
Msa0808010 MtrunA17_Chr3g0078521 58.333 132 49 3 40 166 704 834 6.18e-41 145
Msa0808010 MtrunA17_Chr3g0078521 73.529 34 9 0 7 40 574 607 2.40e-12 63.9
Msa0808010 MtrunA17_Chr3g0078531 58.333 132 49 3 40 166 712 842 1.03e-40 145
Msa0808010 MtrunA17_Chr3g0078531 73.529 34 9 0 7 40 582 615 7.82e-12 62.4
Msa0808010 MtrunA17_Chr8g0361431 57.009 107 41 1 40 141 669 775 7.67e-35 128
Msa0808010 MtrunA17_Chr8g0361281 51.128 133 55 3 40 166 698 826 9.42e-35 128
Msa0808010 MtrunA17_Chr4g0042431 47.059 136 62 4 40 166 16 150 5.15e-33 114
Msa0808010 MtrunA17_Chr4g0042361 47.368 133 64 2 40 166 724 856 7.70e-32 120
Msa0808010 MtrunA17_Chr4g0042341 49.242 132 60 2 40 166 708 837 8.36e-32 119
Msa0808010 MtrunA17_Chr8g0361341 48.673 113 53 1 40 147 23 135 2.48e-31 110
Msa0808010 MtrunA17_Chr2g0280691 47.368 133 61 4 40 166 711 840 9.95e-31 116
Msa0808010 MtrunA17_Chr2g0280701 44.361 133 67 2 40 166 685 816 4.10e-30 115
Msa0808010 MtrunA17_Chr3g0084631 45.455 132 63 2 40 166 48 175 9.06e-30 107
Msa0808010 MtrunA17_Chr4g0042351 47.321 112 53 1 40 145 638 749 9.78e-30 114
Msa0808010 MtrunA17_Chr8g0361441 44.030 134 68 2 40 166 691 824 1.01e-29 114
Msa0808010 MtrunA17_Chr2g0280761 39.850 133 74 1 40 166 16 148 1.45e-29 105
Msa0808010 MtrunA17_Chr3g0098781 46.617 133 65 2 40 166 96 228 1.48e-29 108
Msa0808010 MtrunA17_Chr2g0280711 43.478 138 67 2 40 166 715 852 1.58e-29 113
Msa0808010 MtrunA17_Chr6g0453561 41.176 136 71 3 40 166 52 187 6.86e-29 105
Msa0808010 MtrunA17_Chr4g0042401 42.647 136 69 2 40 166 688 823 7.05e-29 111
Msa0808010 MtrunA17_Chr3g0084661 46.212 132 62 2 40 166 218 345 1.02e-28 108
Msa0808010 MtrunA17_Chr3g0084441 47.368 133 64 2 40 166 691 823 4.38e-28 109
Msa0808010 MtrunA17_Chr3g0084421 46.715 137 63 2 40 166 647 783 1.09e-27 108
Msa0808010 MtrunA17_Chr4g0048631 41.176 136 71 2 40 166 717 852 1.18e-27 107
Msa0808010 MtrunA17_Chr8g0361251 47.788 113 54 1 40 147 691 803 2.62e-27 107
Msa0808010 MtrunA17_Chr3g0081001 43.704 135 68 2 40 166 528 662 3.09e-27 106
Msa0808010 MtrunA17_Chr3g0084411 45.255 137 65 2 40 166 684 820 3.18e-27 106
Msa0808010 MtrunA17_Chr3g0084411 52.239 67 27 2 7 69 554 619 5.60e-11 60.1
Msa0808010 MtrunA17_Chr3g0081011 40.741 135 72 3 40 166 524 658 3.85e-27 106
Msa0808010 MtrunA17_Chr4g0042441 39.706 136 73 2 40 166 685 820 3.89e-27 106
Msa0808010 MtrunA17_Chr3g0081071 44.526 137 66 3 40 166 114 250 4.15e-27 102
Msa0808010 MtrunA17_Chr3g0084491 47.368 133 64 2 40 166 691 823 7.23e-27 105
Msa0808010 MtrunA17_Chr3g0084691 48.120 133 60 3 40 166 707 836 7.24e-27 105
Msa0808010 MtrunA17_Chr2g0318831 42.537 134 67 4 40 166 687 817 1.39e-26 104
Msa0808010 MtrunA17_Chr4g0042381 46.729 107 51 1 40 140 638 744 1.63e-26 104
Msa0808010 MtrunA17_Chr3g0084451 49.265 136 57 5 40 166 691 823 1.71e-26 104
Msa0808010 MtrunA17_Chr3g0084431 47.727 132 64 1 40 166 679 810 2.82e-26 103
Msa0808010 MtrunA17_Chr2g0318811 42.537 134 67 4 40 166 685 815 4.27e-26 103
Msa0808010 MtrunA17_Chr8g0354331 40.741 135 72 2 40 166 285 419 5.24e-26 102
Msa0808010 MtrunA17_Chr4g0048801 41.045 134 72 2 40 166 703 836 8.19e-26 102
Msa0808010 MtrunA17_Chr4g0048801 42.222 90 40 4 7 90 573 656 7.32e-13 65.5
Msa0808010 MtrunA17_Chr2g0318841 41.791 134 68 4 40 166 686 816 1.12e-25 102
Msa0808010 MtrunA17_Chr8g0340091 41.912 136 70 2 40 166 717 852 1.18e-25 102
Msa0808010 MtrunA17_Chr2g0280751 41.353 133 71 2 40 166 711 842 1.95e-25 101
Msa0808010 MtrunA17_Chr3g0081101 43.066 137 68 3 40 166 23 159 1.97e-25 95.5
Msa0808010 MtrunA17_Chr2g0280681 41.791 134 69 4 37 161 683 816 3.00e-25 101
Msa0808010 MtrunA17_Chr2g0280681 50.746 67 28 2 7 69 556 621 8.18e-11 59.7
Msa0808010 MtrunA17_Chr2g0280791 39.850 133 73 2 40 166 706 837 5.82e-25 100
Msa0808010 MtrunA17_Chr2g0280791 47.761 67 30 2 7 69 576 641 4.42e-11 60.5
Msa0808010 MtrunA17_Chr3g0084681 43.609 133 65 4 40 166 649 777 1.08e-24 99.4
Msa0808010 MtrunA17_Chr3g0084681 50.746 67 28 2 7 69 519 584 2.61e-11 60.8
Msa0808010 MtrunA17_Chr4g0042391 44.144 111 56 1 40 144 638 748 1.11e-24 99.4
Msa0808010 MtrunA17_Chr8g0354351 43.704 135 68 2 40 166 518 652 1.20e-24 99.4
Msa0808010 MtrunA17_Chr8g0340051 39.706 136 73 2 40 166 214 349 1.22e-24 97.4
Msa0808010 MtrunA17_Chr2g0280801 39.850 133 73 2 40 166 712 843 2.08e-24 98.6
Msa0808010 MtrunA17_Chr2g0280801 50.746 67 28 2 7 69 582 647 1.39e-11 61.6
Msa0808010 MtrunA17_Chr3g0082941 40.602 133 66 2 40 166 358 483 2.58e-24 97.8
Msa0808010 MtrunA17_Chr8g0354391 38.971 136 74 2 40 166 119 254 2.58e-24 95.1
Msa0808010 MtrunA17_Chr2g0280831 39.394 132 73 2 40 165 280 410 3.66e-24 97.1
Msa0808010 MtrunA17_Chr2g0280831 50.746 67 28 2 7 69 150 215 1.12e-11 62.0
Msa0808010 MtrunA17_Chr4g0023111 40.625 128 67 2 30 148 886 1013 4.95e-24 97.8
Msa0808010 MtrunA17_Chr8g0354271 47.115 104 48 2 40 136 520 623 5.07e-24 97.4
Msa0808010 MtrunA17_Chr8g0361261 42.424 132 66 3 40 166 722 848 5.32e-24 97.4
Msa0808010 MtrunA17_Chr8g0361261 66.667 42 12 1 1 40 584 625 9.90e-11 59.3
Msa0808010 MtrunA17_Chr4g0023221 42.222 135 68 3 40 166 915 1047 5.41e-24 97.4
Msa0808010 MtrunA17_Chr3g0081031 42.222 135 70 2 40 166 537 671 5.52e-24 97.4
Msa0808010 MtrunA17_Chr8g0361141 45.926 135 64 3 40 166 701 834 6.76e-24 97.1
Msa0808010 MtrunA17_Chr8g0354281 42.982 114 59 1 40 147 520 633 8.46e-24 97.1
Msa0808010 MtrunA17_Chr8g0361301 43.939 132 64 4 40 166 691 817 1.08e-23 96.7
Msa0808010 MtrunA17_Chr8g0361301 66.667 42 12 1 1 40 553 594 9.48e-11 59.3
Msa0808010 MtrunA17_Chr4g0048581 45.794 107 51 2 40 140 716 821 4.71e-23 94.7
Msa0808010 MtrunA17_Chr8g0361161 44.118 136 65 4 40 166 229 362 7.62e-23 92.8
Msa0808010 MtrunA17_Chr8g0354431 44.444 117 58 2 40 149 527 643 9.97e-23 94.0
Msa0808010 MtrunA17_Chr4g0020081 37.313 134 76 3 40 166 696 828 1.21e-22 93.6
Msa0808010 MtrunA17_Chr1g0206351 42.308 104 54 1 40 137 538 641 1.75e-22 93.2
Msa0808010 MtrunA17_Chr8g0357691 46.602 103 49 2 40 136 663 765 3.83e-22 92.0
Msa0808010 MtrunA17_Chr8g0354421 45.536 112 55 1 40 145 548 659 6.11e-22 91.7
Msa0808010 MtrunA17_Chr8g0357631 38.655 119 67 1 40 152 653 771 7.25e-22 91.3
Msa0808010 MtrunA17_Chr8g0357661 38.983 118 65 2 40 150 48 165 7.47e-22 86.7
Msa0808010 MtrunA17_Chr1g0206361 45.545 101 49 1 40 134 528 628 7.82e-22 91.3
Msa0808010 MtrunA17_Chr5g0393981 39.855 138 66 5 40 161 581 717 9.71e-22 90.9
Msa0808010 MtrunA17_Chr8g0358121 42.735 117 60 3 40 149 647 763 1.30e-21 90.5
Msa0808010 MtrunA17_Chr5g0394011 43.636 110 54 2 40 141 536 645 1.79e-21 90.1
Msa0808010 MtrunA17_Chr8g0357761 40.678 118 63 2 40 150 665 782 2.06e-21 90.1
Msa0808010 MtrunA17_Chr8g0354441 41.880 117 62 1 40 150 535 651 2.07e-21 90.1
Msa0808010 MtrunA17_Chr2g0280731 36.090 133 78 2 40 166 735 866 2.16e-21 90.1
Msa0808010 MtrunA17_Chr1g0206401 41.509 106 56 1 40 139 535 640 2.40e-21 89.7
Msa0808010 MtrunA17_Chr7g0236571 39.259 135 74 2 40 166 520 654 2.41e-21 89.7
Msa0808010 MtrunA17_Chr7g0236571 76.471 34 8 0 7 40 394 427 3.30e-12 63.5
Msa0808010 MtrunA17_Chr8g0340111 44.037 109 55 1 40 142 690 798 2.95e-21 89.7
Msa0808010 MtrunA17_Chr2g0280781 38.806 134 69 4 40 166 695 822 2.98e-21 89.7
Msa0808010 MtrunA17_Chr2g0280781 50.746 67 28 2 7 69 565 630 1.11e-11 62.0
Msa0808010 MtrunA17_Chr8g0340081 38.519 135 75 2 40 166 692 826 3.76e-21 89.4
Msa0808010 MtrunA17_Chr7g0236691 38.519 135 75 2 40 166 685 819 7.96e-21 88.6
Msa0808010 MtrunA17_Chr7g0236691 67.647 34 11 0 7 40 555 588 8.14e-11 59.7
Msa0808010 MtrunA17_Chr4g0055011 38.519 135 75 2 40 166 256 390 8.31e-21 87.4
Msa0808010 MtrunA17_Chr4g0055011 64.706 34 12 0 7 40 126 159 2.82e-11 60.8
Msa0808010 MtrunA17_Chr8g0340071 38.519 135 75 2 40 166 688 822 8.69e-21 88.2
Msa0808010 MtrunA17_Chr8g0357781 42.735 117 60 4 40 149 16 132 1.14e-20 83.2
Msa0808010 MtrunA17_Chr8g0357711 36.975 119 69 1 40 152 662 780 1.89e-20 87.4
Msa0808010 MtrunA17_Chr4g0048781 37.594 133 77 2 40 166 173 305 1.92e-20 85.5
Msa0808010 MtrunA17_Chr1g0154331 39.098 133 70 4 40 163 224 354 2.04e-20 86.3
Msa0808010 MtrunA17_Chr4g0048641 39.850 133 74 2 40 166 643 775 2.33e-20 87.0
Msa0808010 MtrunA17_Chr8g0357961 43.697 119 56 5 40 149 669 785 2.87e-20 86.7
Msa0808010 MtrunA17_Chr8g0358101 39.024 123 66 3 40 155 649 769 3.67e-20 86.7
Msa0808010 MtrunA17_Chr2g0323231 34.932 146 82 4 8 140 324 469 5.06e-20 85.9
Msa0808010 MtrunA17_Chr8g0358081 37.209 129 74 2 40 161 646 774 5.14e-20 85.9
Msa0808010 MtrunA17_Chr8g0357991 42.857 119 57 5 40 149 670 786 5.16e-20 85.9
Msa0808010 MtrunA17_Chr8g0357981 40.171 117 63 2 40 149 490 606 5.18e-20 85.9
Msa0808010 MtrunA17_Chr6g0474901 39.048 105 57 2 40 137 751 855 5.28e-20 85.9
Msa0808010 MtrunA17_Chr8g0358061 39.496 119 65 2 40 151 241 359 5.61e-20 85.1
Msa0808010 MtrunA17_Chr8g0357651 36.975 119 69 1 40 152 655 773 6.19e-20 85.9
Msa0808010 MtrunA17_Chr8g0358071 37.984 129 73 2 40 161 661 789 6.55e-20 85.9
Msa0808010 MtrunA17_Chr7g0236641 39.706 136 72 3 40 166 710 844 6.93e-20 85.9
Msa0808010 MtrunA17_Chr7g0236641 67.647 34 11 0 7 40 580 613 1.16e-11 62.0
Msa0808010 MtrunA17_Chr1g0206231 36.496 137 77 2 40 166 531 667 6.94e-20 85.5
Msa0808010 MtrunA17_Chr7g0236231 37.778 135 76 2 40 166 703 837 7.55e-20 85.5
Msa0808010 MtrunA17_Chr7g0236231 70.588 34 10 0 7 40 573 606 5.36e-11 60.1
Msa0808010 MtrunA17_Chr1g0154311 38.849 139 69 4 40 166 536 670 8.92e-20 85.5
Msa0808010 MtrunA17_Chr7g0236471 38.235 136 74 3 40 166 525 659 1.03e-19 85.1
Msa0808010 MtrunA17_Chr7g0236471 76.471 34 8 0 7 40 395 428 4.83e-11 60.1
Msa0808010 MtrunA17_Chr8g0357831 40.000 115 62 1 40 154 377 484 1.23e-19 84.7
Msa0808010 MtrunA17_Chr5g0428581 43.269 104 52 2 40 137 229 331 1.62e-19 84.0
Msa0808010 MtrunA17_Chr6g0474991 37.143 105 59 2 40 137 48 152 1.83e-19 80.9
Msa0808010 MtrunA17_Chr1g0206331 39.423 104 57 1 40 137 520 623 2.14e-19 84.3
Msa0808010 MtrunA17_Chr3g0119041 43.689 103 52 1 40 136 525 627 2.33e-19 84.0
Msa0808010 MtrunA17_Chr6g0475091 37.143 105 59 2 40 137 766 870 2.45e-19 84.0
Msa0808010 MtrunA17_Chr8g0358031 39.316 117 64 2 40 149 664 780 2.65e-19 84.0
Msa0808010 MtrunA17_Chr8g0358141 37.984 129 73 2 40 161 263 391 2.86e-19 83.6
Msa0808010 MtrunA17_Chr8g0360201 41.176 136 69 4 40 166 591 724 3.42e-19 83.6
Msa0808010 MtrunA17_Chr8g0360201 46.154 78 36 2 1 72 453 530 3.10e-11 60.8
Msa0808010 MtrunA17_Chr4g0048791 40.602 133 71 3 40 166 717 847 3.47e-19 83.6
Msa0808010 MtrunA17_Chr4g0048791 44.286 70 35 1 7 72 587 656 4.10e-11 60.5
Msa0808010 MtrunA17_Chr8g0357881 41.026 117 62 2 40 149 661 777 3.61e-19 83.6
Msa0808010 MtrunA17_Chr8g0357921 38.739 111 62 1 40 144 16 126 4.30e-19 79.0
Msa0808010 MtrunA17_Chr1g0154351 35.338 133 79 2 40 166 543 674 4.83e-19 83.2
Msa0808010 MtrunA17_Chr5g0394001 47.674 86 43 2 40 124 515 599 5.99e-19 82.8
Msa0808010 MtrunA17_Chr1g0206391 39.623 106 58 1 40 139 225 330 6.17e-19 82.4
Msa0808010 MtrunA17_Chr7g0236531 36.765 136 76 3 40 166 223 357 8.62e-19 81.6
Msa0808010 MtrunA17_Chr7g0236531 70.588 34 10 0 7 40 93 126 5.42e-12 62.8
Msa0808010 MtrunA17_Chr6g0474811 38.095 105 58 2 40 137 758 862 8.66e-19 82.4
Msa0808010 MtrunA17_Chr6g0474871 37.143 105 59 2 40 137 750 854 9.53e-19 82.4
Msa0808010 MtrunA17_Chr7g0236551 38.235 136 74 3 40 166 673 807 9.67e-19 82.4
Msa0808010 MtrunA17_Chr7g0236551 70.588 34 10 0 7 40 543 576 7.07e-12 62.8
Msa0808010 MtrunA17_Chr8g0347571 34.307 137 77 4 40 164 755 890 1.03e-18 82.4
Msa0808010 MtrunA17_Chr6g0474861 37.143 105 59 2 40 137 471 575 1.07e-18 82.0
Msa0808010 MtrunA17_Chr4g0065521 35.036 137 80 2 39 166 221 357 1.17e-18 81.3
Msa0808010 MtrunA17_Chr4g0048741 39.850 133 74 2 40 166 717 849 1.47e-18 82.0
Msa0808010 MtrunA17_Chr1g0206321 38.095 105 58 2 40 137 16 120 2.62e-18 77.0
Msa0808010 MtrunA17_Chr4g0048661 39.850 133 74 2 40 166 222 354 3.33e-18 80.1
Msa0808010 MtrunA17_Chr1g0206551 42.857 105 52 3 40 137 220 323 3.53e-18 80.1
Msa0808010 MtrunA17_Chr4g0048681 39.098 133 75 2 40 166 465 597 3.96e-18 80.5
Msa0808010 MtrunA17_Chr4g0048711 41.748 103 55 1 40 137 114 216 4.19e-18 80.1
Msa0808010 MtrunA17_Chr4g0048711 42.529 87 50 0 40 126 271 357 6.53e-14 68.2
Msa0808010 MtrunA17_Chr1g0205771 39.815 108 58 2 40 140 528 635 4.56e-18 80.5
Msa0808010 MtrunA17_Chr7g0236341 39.850 133 71 4 40 166 703 832 5.14e-18 80.5
Msa0808010 MtrunA17_Chr7g0236341 68.571 35 11 0 7 41 573 607 1.43e-11 61.6
Msa0808010 MtrunA17_Chr6g0474851 31.343 134 79 3 11 137 90 217 1.10e-17 77.4
Msa0808010 MtrunA17_Chr1g0154321 40.517 116 50 3 40 137 553 667 1.53e-17 79.0
Msa0808010 MtrunA17_Chr4g0048731 42.157 102 54 1 40 136 231 332 2.22e-17 77.8
Msa0808010 MtrunA17_Chr7g0236561 35.075 134 80 2 40 166 690 823 2.99e-17 78.2
Msa0808010 MtrunA17_Chr7g0236561 67.647 34 11 0 7 40 560 593 6.29e-11 59.7
Msa0808010 MtrunA17_Chr4g0048571 39.024 123 56 2 7 110 70 192 3.08e-17 75.1
Msa0808010 MtrunA17_Chr1g0154371 40.777 103 54 2 40 136 541 642 3.25e-17 77.8
Msa0808010 MtrunA17_Chr5g0426941 41.905 105 53 3 40 137 524 627 4.17e-17 77.8
Msa0808010 MtrunA17_Chr8g0357871 37.500 104 62 1 40 143 16 116 4.28e-17 72.8
Msa0808010 MtrunA17_Chr6g0484231 34.848 132 78 3 40 165 233 362 4.77e-17 77.0
Msa0808010 MtrunA17_Chr4g0065561 35.036 137 80 2 39 166 630 766 5.38e-17 77.4
Msa0808010 MtrunA17_Chr1g0206431 45.882 85 45 1 40 124 70 153 1.10e-16 73.9
Msa0808010 MtrunA17_Chr7g0236201 37.500 136 75 3 40 166 655 789 1.14e-16 76.3
Msa0808010 MtrunA17_Chr7g0236201 68.571 35 11 0 7 41 525 559 1.15e-11 62.0
Msa0808010 MtrunA17_Chr5g0394021 38.462 130 70 3 40 161 506 633 1.56e-16 75.9
Msa0808010 MtrunA17_Chr6g0475131 31.298 131 73 4 40 158 194 319 1.69e-16 75.1
Msa0808010 MtrunA17_Chr7g0236651 36.090 133 73 2 40 166 670 796 2.94e-16 75.1
Msa0808010 MtrunA17_Chr7g0236651 73.529 34 9 0 7 40 540 573 6.60e-12 62.8
Msa0808010 MtrunA17_Chr1g0206561 39.048 105 56 3 40 137 514 617 3.91e-16 74.7
Msa0808010 MtrunA17_Chr1g0206261 34.043 141 78 5 40 166 273 412 5.05e-16 74.3
Msa0808010 MtrunA17_Chr2g0281241 44.706 85 35 1 40 124 239 311 7.25e-16 73.2
Msa0808010 MtrunA17_Chr1g0206421 45.098 102 45 3 40 134 413 510 8.80e-16 73.9
Msa0808010 MtrunA17_Chr1g0206461 43.137 102 51 2 40 135 518 618 1.65e-15 73.2
Msa0808010 MtrunA17_Chr6g0475111 36.111 108 61 3 40 140 772 878 3.08e-15 72.4
Msa0808010 MtrunA17_Chr6g0475201 30.935 139 76 5 40 166 759 889 3.90e-15 72.0
Msa0808010 MtrunA17_Chr4g0065541 33.577 137 82 2 39 166 622 758 4.94e-15 71.6
Msa0808010 MtrunA17_Chr1g0206221 29.927 137 86 2 40 166 10 146 6.72e-15 67.8
Msa0808010 MtrunA17_Chr1g0206521 38.462 130 71 3 40 161 1162 1290 1.17e-14 70.9
Msa0808010 MtrunA17_Chr1g0206521 42.157 102 52 2 40 135 520 620 1.36e-14 70.5
Msa0808010 MtrunA17_Chr7g0236121 39.316 117 64 2 40 150 689 804 1.81e-14 70.1
Msa0808010 MtrunA17_Chr7g0236121 49.254 67 29 2 7 69 559 624 1.10e-11 62.0
Msa0808010 MtrunA17_Chr7g0236511 33.088 136 73 3 44 166 669 799 2.65e-14 69.7
Msa0808010 MtrunA17_Chr7g0236511 70.588 34 10 0 7 40 556 589 1.20e-11 62.0
Msa0808010 MtrunA17_Chr7g0226891 35.345 116 67 2 40 149 233 346 4.89e-14 68.6
Msa0808010 MtrunA17_Chr8g0376131 33.028 109 65 1 40 140 236 344 1.21e-13 67.4
Msa0808010 MtrunA17_Chr1g0206531 43.529 85 47 1 40 124 522 605 1.42e-13 67.4
Msa0808010 MtrunA17_Chr6g0475181 28.571 133 71 4 40 166 16 130 2.55e-13 63.2
Msa0808010 MtrunA17_Chr1g0206451 43.529 85 47 1 40 124 557 640 3.05e-13 66.6
Msa0808010 MtrunA17_Chr7g0236621 67.647 34 11 0 7 40 13 46 8.73e-13 59.7
Msa0808010 MtrunA17_Chr5g0428511 36.697 109 53 4 73 166 2 109 1.28e-12 60.8
Msa0808010 MtrunA17_Chr7g0236161 49.254 67 29 2 7 69 525 590 1.61e-12 64.3
Msa0808010 MtrunA17_Chr3g0078881 63.158 38 14 0 7 44 104 141 5.57e-12 60.1
Msa0808010 MtrunA17_Chr2g0280771 50.746 67 28 2 7 69 537 602 1.99e-11 61.2
Msa0808010 MtrunA17_Chr5g0413171 33.333 111 63 3 40 139 271 381 2.13e-11 61.2
Msa0808010 MtrunA17_Chr2g0297941 37.705 122 58 7 40 150 275 389 2.26e-11 60.8
Msa0808010 MtrunA17_Chr8g0354291 37.000 100 55 3 75 166 5 104 3.19e-11 57.0
Msa0808010 MtrunA17_Chr2g0318941 73.529 34 9 0 7 40 128 161 5.81e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808010 AT4G27290.2 48.148 135 62 3 40 166 695 829 4.45e-29 112
Msa0808010 AT4G27290.1 48.148 135 62 3 40 166 649 783 5.25e-29 112
Msa0808010 AT4G23150.1 41.429 140 69 3 40 166 520 659 1.65e-26 105
Msa0808010 AT1G65790.1 42.553 141 67 3 40 166 703 843 9.33e-26 102
Msa0808010 AT4G23220.1 41.135 141 67 4 40 166 520 658 2.05e-25 102
Msa0808010 AT1G11330.1 40.000 135 73 2 40 166 706 840 4.72e-25 100
Msa0808010 AT1G11330.2 40.000 135 73 2 40 166 708 842 4.77e-25 100
Msa0808010 AT1G11350.1 38.519 135 75 2 40 166 696 830 9.82e-25 100
Msa0808010 AT4G27300.1 41.353 133 71 3 40 166 684 815 2.31e-24 99.0
Msa0808010 AT4G21380.1 42.553 141 67 3 40 166 710 850 2.96e-24 98.6
Msa0808010 AT4G23160.1 38.983 118 66 1 40 151 543 660 3.30e-24 98.6
Msa0808010 AT4G23140.1 37.857 140 74 2 40 166 535 674 4.19e-24 98.2
Msa0808010 AT4G23140.2 37.857 140 74 2 40 166 541 680 4.20e-24 98.2
Msa0808010 AT1G65800.1 40.426 141 70 3 40 166 707 847 5.09e-24 97.8
Msa0808010 AT4G23180.1 35.507 138 78 3 40 166 532 669 1.98e-23 96.3
Msa0808010 AT4G11480.3 39.310 145 69 6 40 166 508 651 3.13e-23 95.5
Msa0808010 AT4G11480.4 39.310 145 69 6 40 166 505 648 3.15e-23 95.5
Msa0808010 AT4G11480.1 39.310 145 69 6 40 166 513 656 3.16e-23 95.5
Msa0808010 AT4G03230.2 40.000 150 77 4 30 166 761 910 3.58e-23 95.5
Msa0808010 AT4G03230.6 40.000 150 77 4 30 166 761 910 3.58e-23 95.5
Msa0808010 AT4G03230.5 40.000 150 77 4 30 166 789 938 3.73e-23 95.5
Msa0808010 AT4G03230.8 40.000 150 77 4 30 166 703 852 4.06e-23 95.5
Msa0808010 AT4G03230.3 40.000 150 77 4 30 166 696 845 4.25e-23 95.5
Msa0808010 AT4G03230.7 40.000 150 77 4 30 166 704 853 4.39e-23 95.1
Msa0808010 AT4G23250.1 36.986 146 71 4 40 166 543 686 4.80e-23 95.1
Msa0808010 AT4G23230.1 44.660 103 51 1 40 136 521 623 5.06e-23 95.1
Msa0808010 AT4G03230.4 40.000 150 77 4 30 166 861 1010 5.08e-23 95.1
Msa0808010 AT4G03230.1 40.000 150 77 4 30 166 861 1010 5.08e-23 95.1
Msa0808010 AT4G23250.3 40.650 123 62 3 40 153 538 658 1.27e-22 94.0
Msa0808010 AT4G23250.2 40.650 123 62 3 40 153 538 658 1.33e-22 94.0
Msa0808010 AT4G11470.1 37.500 144 73 4 40 166 523 666 5.18e-22 92.0
Msa0808010 AT4G11470.2 37.500 144 73 4 40 166 528 671 5.18e-22 92.0
Msa0808010 AT4G21390.1 42.748 131 63 3 40 159 713 842 5.24e-22 92.0
Msa0808010 AT4G21390.1 70.588 34 10 0 7 40 583 616 1.90e-11 61.6
Msa0808010 AT1G61430.11 39.552 134 71 3 40 166 650 780 1.09e-21 91.3
Msa0808010 AT1G61430.12 39.552 134 71 3 40 166 650 780 1.09e-21 91.3
Msa0808010 AT1G61430.13 39.552 134 71 3 40 166 650 780 1.09e-21 91.3
Msa0808010 AT1G61430.9 39.552 134 71 3 40 166 673 803 1.09e-21 91.3
Msa0808010 AT1G61430.1 39.552 134 71 3 40 166 676 806 1.09e-21 91.3
Msa0808010 AT4G11530.1 40.426 141 70 4 40 166 536 676 2.23e-21 90.5
Msa0808010 AT1G61610.1 37.226 137 73 5 40 166 709 842 2.70e-21 90.1
Msa0808010 AT1G61610.1 49.333 75 31 3 1 69 571 644 8.46e-11 60.1
Msa0808010 AT1G11340.1 36.496 137 75 4 40 166 699 833 1.36e-20 88.2
Msa0808010 AT4G23270.2 44.762 105 51 2 40 137 510 614 1.48e-20 87.8
Msa0808010 AT4G23270.1 44.762 105 51 2 40 137 510 614 1.48e-20 87.8
Msa0808010 AT4G23270.3 44.762 105 51 2 40 137 510 614 1.48e-20 87.8
Msa0808010 AT1G61490.6 39.552 134 71 3 40 166 648 778 1.65e-20 87.8
Msa0808010 AT1G61490.7 39.552 134 71 3 40 166 648 778 1.65e-20 87.8
Msa0808010 AT1G61500.1 41.045 134 68 3 40 166 675 804 1.66e-20 87.8
Msa0808010 AT1G61490.3 39.552 134 71 3 40 166 524 654 1.70e-20 87.8
Msa0808010 AT1G61420.5 38.806 134 71 3 40 166 530 659 1.70e-20 87.8
Msa0808010 AT1G61490.4 39.552 134 71 3 40 166 674 804 1.72e-20 87.8
Msa0808010 AT1G61490.1 39.552 134 71 3 40 166 674 804 1.72e-20 87.8
Msa0808010 AT1G61490.2 39.552 134 71 3 40 166 674 804 1.72e-20 87.8
Msa0808010 AT1G61490.5 39.552 134 71 3 40 166 674 804 1.72e-20 87.8
Msa0808010 AT1G61420.2 38.806 134 71 3 40 166 680 809 1.78e-20 87.8
Msa0808010 AT1G61420.4 38.806 134 71 3 40 166 680 809 1.78e-20 87.8
Msa0808010 AT1G61420.1 38.806 134 71 3 40 166 678 807 1.79e-20 87.8
Msa0808010 AT1G61420.3 38.806 134 71 3 40 166 528 657 1.85e-20 87.8
Msa0808010 AT1G61500.2 41.045 134 68 3 40 166 657 786 1.86e-20 87.8
Msa0808010 AT1G61500.3 41.045 134 68 3 40 166 680 809 1.86e-20 87.8
Msa0808010 AT4G21400.8 41.727 139 67 6 40 166 436 572 2.23e-20 87.4
Msa0808010 AT4G21400.2 41.727 139 67 6 40 166 535 671 2.32e-20 87.4
Msa0808010 AT4G21400.7 41.727 139 67 6 40 166 537 673 2.32e-20 87.4
Msa0808010 AT4G21400.1 41.727 139 67 6 40 166 547 683 2.33e-20 87.4
Msa0808010 AT4G23130.1 37.500 136 76 3 40 166 524 659 2.73e-20 87.0
Msa0808010 AT4G23130.2 37.500 136 76 3 40 166 528 663 2.73e-20 87.0
Msa0808010 AT1G61370.1 36.842 133 75 3 40 166 685 814 2.88e-20 87.0
Msa0808010 AT1G61380.2 38.235 136 73 4 40 166 525 658 5.05e-20 86.3
Msa0808010 AT1G61370.2 38.806 134 71 4 40 166 534 663 5.06e-20 86.3
Msa0808010 AT1G61380.1 38.235 136 73 4 40 166 672 805 5.23e-20 86.3
Msa0808010 AT4G11490.1 45.283 106 47 3 40 136 505 608 5.32e-20 86.3
Msa0808010 AT3G16030.1 45.370 108 50 3 40 138 711 818 5.97e-20 86.3
Msa0808010 AT3G16030.6 45.370 108 50 3 40 138 732 839 5.99e-20 86.3
Msa0808010 AT4G23310.2 37.857 140 73 4 40 166 652 790 7.38e-20 85.9
Msa0808010 AT4G23190.1 38.017 121 66 2 40 151 534 654 7.90e-20 85.9
Msa0808010 AT1G61550.1 38.806 134 71 3 40 166 673 802 8.38e-20 85.9
Msa0808010 AT4G23310.1 37.857 140 73 4 40 166 692 830 8.42e-20 85.9
Msa0808010 AT1G67520.5 42.446 139 68 5 40 166 443 581 8.58e-20 85.9
Msa0808010 AT3G45860.1 37.692 130 67 3 40 161 535 658 9.06e-20 85.9
Msa0808010 AT4G23290.1 44.860 107 48 3 40 137 504 608 9.16e-20 85.9
Msa0808010 AT4G23200.1 41.284 109 49 4 40 137 520 624 9.19e-20 85.9
Msa0808010 AT1G67520.8 42.446 139 68 5 40 166 472 610 9.21e-20 85.5
Msa0808010 AT1G67520.7 42.446 139 68 5 40 166 472 610 9.21e-20 85.5
Msa0808010 AT4G23290.2 44.860 107 48 3 40 137 547 651 9.36e-20 85.9
Msa0808010 AT4G23190.3 38.017 121 66 2 40 151 456 576 9.67e-20 85.5
Msa0808010 AT4G23190.4 38.017 121 66 2 40 151 456 576 9.67e-20 85.5
Msa0808010 AT1G67520.4 42.446 139 68 5 40 166 637 775 1.25e-19 85.5
Msa0808010 AT1G67520.3 42.446 139 68 5 40 166 680 818 1.43e-19 85.1
Msa0808010 AT1G67520.6 42.446 139 68 5 40 166 687 825 1.49e-19 85.1
Msa0808010 AT1G11410.3 36.170 141 74 5 40 166 683 821 1.80e-19 84.7
Msa0808010 AT1G11410.1 36.170 141 74 5 40 166 707 845 1.86e-19 84.7
Msa0808010 AT1G11410.2 36.170 141 74 5 40 166 592 730 1.95e-19 84.7
Msa0808010 AT1G11410.4 36.170 141 74 5 40 166 714 852 1.99e-19 84.7
Msa0808010 AT1G11303.1 37.500 136 68 4 40 166 693 820 2.95e-19 84.3
Msa0808010 AT4G23260.2 36.691 139 74 4 40 166 512 648 3.09e-19 84.3
Msa0808010 AT1G61390.1 39.098 133 70 4 40 166 704 831 3.28e-19 84.3
Msa0808010 AT4G23260.1 36.691 139 74 4 40 166 523 659 3.48e-19 84.0
Msa0808010 AT4G23300.1 38.281 128 63 3 40 158 537 657 3.48e-19 84.0
Msa0808010 AT1G61400.2 38.060 134 73 3 40 166 692 822 4.25e-19 84.0
Msa0808010 AT1G61400.1 38.060 134 73 3 40 166 684 814 4.58e-19 83.6
Msa0808010 AT4G23280.3 42.857 105 53 2 40 137 478 582 5.94e-19 83.2
Msa0808010 AT4G23280.2 42.857 105 53 2 40 137 526 630 6.03e-19 83.2
Msa0808010 AT4G23280.1 42.857 105 53 2 40 137 528 632 6.04e-19 83.2
Msa0808010 AT3G16030.2 45.370 108 50 3 40 138 588 695 6.43e-19 83.2
Msa0808010 AT4G05200.2 38.462 104 58 1 40 137 549 652 7.37e-19 83.2
Msa0808010 AT4G38830.1 37.391 115 64 2 37 143 526 640 7.68e-19 83.2
Msa0808010 AT4G05200.1 38.462 104 58 1 40 137 531 634 8.32e-19 82.8
Msa0808010 AT4G11460.3 43.925 107 49 3 40 137 530 634 1.06e-18 82.8
Msa0808010 AT4G11460.1 43.925 107 49 3 40 137 533 637 1.07e-18 82.8
Msa0808010 AT4G21410.3 39.855 138 71 5 40 166 543 679 1.13e-18 82.4
Msa0808010 AT4G23240.2 42.056 107 51 3 40 137 212 316 1.16e-18 81.6
Msa0808010 AT4G11460.2 43.925 107 49 3 40 137 455 559 1.26e-18 82.4
Msa0808010 AT4G00970.1 35.971 139 74 4 40 166 530 665 1.30e-18 82.4
Msa0808010 AT1G61440.1 44.231 104 49 2 40 136 662 763 1.83e-18 82.0
Msa0808010 AT1G61440.3 44.231 104 49 2 40 136 667 768 1.92e-18 82.0
Msa0808010 AT1G61440.2 44.231 104 49 2 40 136 692 793 2.06e-18 82.0
Msa0808010 AT1G11280.3 41.121 107 56 3 40 139 677 783 2.31e-18 81.6
Msa0808010 AT1G11280.2 41.121 107 56 3 40 139 689 795 2.32e-18 81.6
Msa0808010 AT1G11280.1 41.121 107 56 3 40 139 699 805 2.32e-18 81.6
Msa0808010 AT4G23240.1 42.056 107 51 3 40 137 519 623 2.51e-18 81.6
Msa0808010 AT1G61390.2 39.098 133 70 4 40 166 536 663 2.54e-18 81.6
Msa0808010 AT1G11300.2 36.765 136 69 4 40 166 678 805 2.62e-18 81.6
Msa0808010 AT1G11300.1 36.765 136 69 4 40 166 693 820 2.78e-18 81.6
Msa0808010 AT1G11280.4 41.121 107 56 3 40 139 687 793 8.34e-18 80.1
Msa0808010 AT4G11900.1 37.121 132 75 2 40 166 721 849 9.60e-18 80.1
Msa0808010 AT4G11900.9 37.121 132 75 2 40 166 652 780 1.08e-17 79.7
Msa0808010 AT4G21410.1 39.855 138 71 5 40 166 418 554 1.13e-17 79.7
Msa0808010 AT1G61480.1 37.121 132 76 3 40 166 680 809 1.31e-17 79.7
Msa0808010 AT4G00960.2 35.461 141 74 4 40 166 148 285 1.62e-17 77.8
Msa0808010 AT4G00960.3 35.461 141 74 4 40 166 155 292 1.70e-17 77.8
Msa0808010 AT4G23320.2 40.952 105 55 2 40 137 367 471 1.84e-17 79.0
Msa0808010 AT4G23320.1 40.952 105 55 2 40 137 367 471 1.84e-17 79.0
Msa0808010 AT4G23320.3 40.952 105 55 2 40 137 388 492 2.08e-17 79.0
Msa0808010 AT4G00960.1 35.461 141 74 4 40 166 242 379 2.73e-17 78.2
Msa0808010 AT4G21230.1 35.556 135 70 3 40 166 517 642 5.19e-17 77.8
Msa0808010 AT4G21366.1 43.478 92 46 1 40 125 16 107 9.70e-17 72.0
Msa0808010 AT4G23210.3 34.677 124 70 4 40 156 542 661 2.25e-15 73.2
Msa0808010 AT1G61460.1 37.302 126 68 3 48 166 628 749 3.21e-15 72.8
Msa0808010 AT1G61360.1 35.294 136 65 3 40 152 682 817 9.29e-15 71.2
Msa0808010 AT1G61360.2 35.294 136 65 3 40 152 601 736 1.24e-14 70.9
Msa0808010 AT1G61360.3 35.294 136 65 3 40 152 601 736 1.24e-14 70.9
Msa0808010 AT1G61360.4 35.294 136 65 3 40 152 601 736 1.24e-14 70.9
Msa0808010 AT1G70530.1 34.545 110 65 2 40 144 506 613 1.49e-13 67.8
Msa0808010 AT1G70740.1 32.710 107 66 1 40 140 245 351 2.83e-13 67.0
Msa0808010 AT4G04510.1 33.562 146 83 6 27 166 511 648 2.11e-12 64.3
Msa0808010 AT4G04510.2 33.562 146 83 6 27 166 513 650 2.15e-12 64.3
Msa0808010 AT4G04570.1 36.893 103 54 3 40 136 532 629 9.52e-12 62.8
Msa0808010 AT1G70740.2 29.412 119 66 2 40 140 233 351 1.66e-11 61.6
Msa0808010 AT1G70520.1 32.759 116 66 3 38 141 506 621 1.82e-11 61.6
Msa0808010 AT4G21390.2 70.588 34 10 0 7 40 583 616 2.29e-11 61.6
Msa0808010 AT4G04490.1 33.036 112 63 3 40 144 524 630 6.23e-11 60.1
Msa0808010 AT1G61610.2 49.333 75 31 3 1 69 571 644 9.25e-11 59.7

Find 27 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAACAGTTGTTGTCATATT+TGG 0.132772 5_3:+31566136 None:intergenic
AATTGATTGATGATTGTTTA+AGG 0.196756 5_3:-31566237 Msa0808010:CDS
AACATGATCACAATCTTATT+TGG 0.217142 5_3:-31566369 Msa0808010:CDS
AGTCTCGATTTATTCATATT+TGG 0.229762 5_3:-31566935 Msa0808010:intron
TCATAAGCGGAAGAAGAAAT+AGG 0.263927 5_3:-31566408 Msa0808010:CDS
TTTAAGAAACCAGGTTCTTT+TGG 0.307833 5_3:+31566097 None:intergenic
TAAGATTGTGATCATGTTCA+TGG 0.375225 5_3:+31566374 None:intergenic
AAATCAGATGTATTTAGCTT+TGG 0.395433 5_3:-31566448 Msa0808010:intron
AAGAATCTTGTTAAGGTTGT+TGG 0.399864 5_3:-31567013 Msa0808010:CDS
ATTGATTGATGATTGTTTAA+GGG 0.416054 5_3:-31566236 Msa0808010:CDS
CATAAGCGGAAGAAGAAATA+GGG 0.426389 5_3:-31566407 Msa0808010:CDS
GTTGTTGGTTGTTGCATTGA+AGG 0.457951 5_3:-31566998 Msa0808010:CDS
TGTTGTAGGCTAGGAGATTG+TGG 0.471603 5_3:-31566279 Msa0808010:intron
TGCATTGAAGAATCTTGTTA+AGG 0.473551 5_3:-31567020 Msa0808010:CDS
GAAGAAATACCTTCAATCAA+TGG 0.484016 5_3:-31566040 Msa0808010:CDS
AATAAATCGAGACTTCTATT+CGG 0.490390 5_3:+31566944 None:intergenic
ATAGTTATACCATTGATTGA+AGG 0.510470 5_3:+31566031 None:intergenic
ACACTCCGTTGTATTAAAGT+TGG 0.514129 5_3:-31566193 Msa0808010:CDS
TTACCTCAACCAAAAGAACC+TGG 0.555301 5_3:-31566106 Msa0808010:CDS
ATCGAGACTTCTATTCGGCA+TGG 0.576891 5_3:+31566949 None:intergenic
ACTCTTTGATTTAAGAAACC+AGG 0.591205 5_3:+31566088 None:intergenic
TGGTTGTTGCATTGAAGGAG+AGG 0.592195 5_3:-31566993 Msa0808010:CDS
TGCAACATGTTCTAGATGAT+AGG 0.604297 5_3:-31566159 Msa0808010:CDS
GGCTAGGAGATTGTGGAGAG+AGG 0.614733 5_3:-31566272 Msa0808010:CDS
ATTGTGATCATGTTCATGGT+AGG 0.614868 5_3:+31566378 None:intergenic
AAAGACCAACTTTAATACAA+CGG 0.644860 5_3:+31566188 None:intergenic
CTATTGCTAGAAATCATAAG+CGG 0.691811 5_3:-31566421 Msa0808010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTGAATTTTGTTGT+AGG - chr5_3:31566747-31566766 Msa0808010:intron 15.0%
!!! AATTTATTGAATTTTGTTGT+AGG - chr5_3:31566747-31566766 Msa0808010:intron 15.0%
!!! TTTTTAAGGAAATTTTCGAA+AGG - chr5_3:31566175-31566194 Msa0808010:CDS 20.0%
!! TAGATTAAGAATCATACATA+GGG - chr5_3:31566323-31566342 Msa0808010:intron 20.0%
!!! TTATAGTTTTTTTTTTCCAG+TGG - chr5_3:31566526-31566545 Msa0808010:intron 20.0%
!! ACTTTCTTTAAATAAAGTAG+TGG - chr5_3:31566719-31566738 Msa0808010:intron 20.0%
!!! AATTGATTGATGATTGTTTA+AGG - chr5_3:31566803-31566822 Msa0808010:intron 20.0%
!!! ATTGATTGATGATTGTTTAA+GGG - chr5_3:31566804-31566823 Msa0808010:intron 20.0%
!!! TTTTTAAGGAAATTTTCGAA+AGG - chr5_3:31566175-31566194 Msa0808010:CDS 20.0%
!! TAGATTAAGAATCATACATA+GGG - chr5_3:31566323-31566342 Msa0808010:intron 20.0%
!!! TTATAGTTTTTTTTTTCCAG+TGG - chr5_3:31566526-31566545 Msa0808010:intron 20.0%
!! ACTTTCTTTAAATAAAGTAG+TGG - chr5_3:31566719-31566738 Msa0808010:intron 20.0%
!!! AATTGATTGATGATTGTTTA+AGG - chr5_3:31566803-31566822 Msa0808010:intron 20.0%
!!! ATTGATTGATGATTGTTTAA+GGG - chr5_3:31566804-31566823 Msa0808010:intron 20.0%
! AATAAATCGAGACTTCTATT+CGG + chr5_3:31566099-31566118 None:intergenic 25.0%
! AGTCTCGATTTATTCATATT+TGG - chr5_3:31566105-31566124 Msa0808010:CDS 25.0%
!!! AATGAAGTGATTCGTTTTTA+AGG - chr5_3:31566161-31566180 Msa0808010:CDS 25.0%
! CTAGATTAAGAATCATACAT+AGG - chr5_3:31566322-31566341 Msa0808010:intron 25.0%
!! AATCCAAAGATTTCAGATTT+TGG - chr5_3:31566384-31566403 Msa0808010:CDS 25.0%
! AATCCATGAATAACATATTC+AGG + chr5_3:31566562-31566581 None:intergenic 25.0%
!! AAATCAGATGTATTTAGCTT+TGG - chr5_3:31566592-31566611 Msa0808010:intron 25.0%
! AACATGATCACAATCTTATT+TGG - chr5_3:31566671-31566690 Msa0808010:intron 25.0%
! AAAGACCAACTTTAATACAA+CGG + chr5_3:31566855-31566874 None:intergenic 25.0%
! ATAACAGTTGTTGTCATATT+TGG + chr5_3:31566907-31566926 None:intergenic 25.0%
!! ATAGTTATACCATTGATTGA+AGG + chr5_3:31567012-31567031 None:intergenic 25.0%
! AATAAATCGAGACTTCTATT+CGG + chr5_3:31566099-31566118 None:intergenic 25.0%
! AGTCTCGATTTATTCATATT+TGG - chr5_3:31566105-31566124 Msa0808010:CDS 25.0%
!!! AATGAAGTGATTCGTTTTTA+AGG - chr5_3:31566161-31566180 Msa0808010:CDS 25.0%
! CTAGATTAAGAATCATACAT+AGG - chr5_3:31566322-31566341 Msa0808010:intron 25.0%
!! AATCCAAAGATTTCAGATTT+TGG - chr5_3:31566384-31566403 Msa0808010:CDS 25.0%
! AATCCATGAATAACATATTC+AGG + chr5_3:31566562-31566581 None:intergenic 25.0%
!! AAATCAGATGTATTTAGCTT+TGG - chr5_3:31566592-31566611 Msa0808010:intron 25.0%
! AACATGATCACAATCTTATT+TGG - chr5_3:31566671-31566690 Msa0808010:intron 25.0%
! AAAGACCAACTTTAATACAA+CGG + chr5_3:31566855-31566874 None:intergenic 25.0%
! ATAACAGTTGTTGTCATATT+TGG + chr5_3:31566907-31566926 None:intergenic 25.0%
!! ATAGTTATACCATTGATTGA+AGG + chr5_3:31567012-31567031 None:intergenic 25.0%
TGCATTGAAGAATCTTGTTA+AGG - chr5_3:31566020-31566039 Msa0808010:CDS 30.0%
AAGAATCTTGTTAAGGTTGT+TGG - chr5_3:31566027-31566046 Msa0808010:CDS 30.0%
AATCATACATAGGGATCTAA+AGG - chr5_3:31566332-31566351 Msa0808010:intron 30.0%
! ATGCCAAAATCTGAAATCTT+TGG + chr5_3:31566390-31566409 None:intergenic 30.0%
!! AAAGATTTCAGATTTTGGCA+TGG - chr5_3:31566389-31566408 Msa0808010:CDS 30.0%
!!! TTTTTTTTCCAGTGGTTACA+TGG - chr5_3:31566534-31566553 Msa0808010:intron 30.0%
CTATTGCTAGAAATCATAAG+CGG - chr5_3:31566619-31566638 Msa0808010:intron 30.0%
TAAGATTGTGATCATGTTCA+TGG + chr5_3:31566669-31566688 None:intergenic 30.0%
! AAGAAAGTCTTTGTTTCATG+CGG + chr5_3:31566707-31566726 None:intergenic 30.0%
!! ATTGAATTTTGTTGTAGGCT+AGG - chr5_3:31566752-31566771 Msa0808010:intron 30.0%
! TTTAAGAAACCAGGTTCTTT+TGG + chr5_3:31566946-31566965 None:intergenic 30.0%
! ACTCTTTGATTTAAGAAACC+AGG + chr5_3:31566955-31566974 None:intergenic 30.0%
GAAGAAATACCTTCAATCAA+TGG - chr5_3:31567000-31567019 Msa0808010:CDS 30.0%
TGCATTGAAGAATCTTGTTA+AGG - chr5_3:31566020-31566039 Msa0808010:CDS 30.0%
AAGAATCTTGTTAAGGTTGT+TGG - chr5_3:31566027-31566046 Msa0808010:CDS 30.0%
AATCATACATAGGGATCTAA+AGG - chr5_3:31566332-31566351 Msa0808010:intron 30.0%
! ATGCCAAAATCTGAAATCTT+TGG + chr5_3:31566390-31566409 None:intergenic 30.0%
!! AAAGATTTCAGATTTTGGCA+TGG - chr5_3:31566389-31566408 Msa0808010:CDS 30.0%
!!! TTTTTTTTCCAGTGGTTACA+TGG - chr5_3:31566534-31566553 Msa0808010:intron 30.0%
CTATTGCTAGAAATCATAAG+CGG - chr5_3:31566619-31566638 Msa0808010:intron 30.0%
TAAGATTGTGATCATGTTCA+TGG + chr5_3:31566669-31566688 None:intergenic 30.0%
! AAGAAAGTCTTTGTTTCATG+CGG + chr5_3:31566707-31566726 None:intergenic 30.0%
!! ATTGAATTTTGTTGTAGGCT+AGG - chr5_3:31566752-31566771 Msa0808010:intron 30.0%
! TTTAAGAAACCAGGTTCTTT+TGG + chr5_3:31566946-31566965 None:intergenic 30.0%
! ACTCTTTGATTTAAGAAACC+AGG + chr5_3:31566955-31566974 None:intergenic 30.0%
GAAGAAATACCTTCAATCAA+TGG - chr5_3:31567000-31567019 Msa0808010:CDS 30.0%
TTGAACTGGATCTATCAAGA+TGG + chr5_3:31566223-31566242 None:intergenic 35.0%
TGATAGATCCAGTTCAAAGT+AGG - chr5_3:31566226-31566245 Msa0808010:CDS 35.0%
TTCAAAGTAGGTTCTTAGGT+TGG - chr5_3:31566238-31566257 Msa0808010:CDS 35.0%
GGAAGACTAGTAGAATAGTT+GGG - chr5_3:31566442-31566461 Msa0808010:CDS 35.0%
GAAGACTAGTAGAATAGTTG+GGG - chr5_3:31566443-31566462 Msa0808010:CDS 35.0%
GCACCTGAATATGTTATTCA+TGG - chr5_3:31566556-31566575 Msa0808010:intron 35.0%
TCATAAGCGGAAGAAGAAAT+AGG - chr5_3:31566632-31566651 Msa0808010:intron 35.0%
CATAAGCGGAAGAAGAAATA+GGG - chr5_3:31566633-31566652 Msa0808010:intron 35.0%
ATTGTGATCATGTTCATGGT+AGG + chr5_3:31566665-31566684 None:intergenic 35.0%
ACACTCCGTTGTATTAAAGT+TGG - chr5_3:31566847-31566866 Msa0808010:intron 35.0%
! TGCAACATGTTCTAGATGAT+AGG - chr5_3:31566881-31566900 Msa0808010:intron 35.0%
TTGAACTGGATCTATCAAGA+TGG + chr5_3:31566223-31566242 None:intergenic 35.0%
TGATAGATCCAGTTCAAAGT+AGG - chr5_3:31566226-31566245 Msa0808010:CDS 35.0%
TTCAAAGTAGGTTCTTAGGT+TGG - chr5_3:31566238-31566257 Msa0808010:CDS 35.0%
GGAAGACTAGTAGAATAGTT+GGG - chr5_3:31566442-31566461 Msa0808010:CDS 35.0%
GAAGACTAGTAGAATAGTTG+GGG - chr5_3:31566443-31566462 Msa0808010:CDS 35.0%
GCACCTGAATATGTTATTCA+TGG - chr5_3:31566556-31566575 Msa0808010:intron 35.0%
TCATAAGCGGAAGAAGAAAT+AGG - chr5_3:31566632-31566651 Msa0808010:intron 35.0%
CATAAGCGGAAGAAGAAATA+GGG - chr5_3:31566633-31566652 Msa0808010:intron 35.0%
ATTGTGATCATGTTCATGGT+AGG + chr5_3:31566665-31566684 None:intergenic 35.0%
ACACTCCGTTGTATTAAAGT+TGG - chr5_3:31566847-31566866 Msa0808010:intron 35.0%
! TGCAACATGTTCTAGATGAT+AGG - chr5_3:31566881-31566900 Msa0808010:intron 35.0%
! GTTGTTGGTTGTTGCATTGA+AGG - chr5_3:31566042-31566061 Msa0808010:CDS 40.0%
CCTAAGAACCTACTTTGAAC+TGG + chr5_3:31566237-31566256 None:intergenic 40.0%
CCAGTTCAAAGTAGGTTCTT+AGG - chr5_3:31566234-31566253 Msa0808010:CDS 40.0%
GGGAAGACTAGTAGAATAGT+TGG - chr5_3:31566441-31566460 Msa0808010:CDS 40.0%
TTACCTCAACCAAAAGAACC+TGG - chr5_3:31566934-31566953 Msa0808010:intron 40.0%
!! AAACCAGGTTCTTTTGGTTG+AGG + chr5_3:31566940-31566959 None:intergenic 40.0%
! GTTGTTGGTTGTTGCATTGA+AGG - chr5_3:31566042-31566061 Msa0808010:CDS 40.0%
CCTAAGAACCTACTTTGAAC+TGG + chr5_3:31566237-31566256 None:intergenic 40.0%
CCAGTTCAAAGTAGGTTCTT+AGG - chr5_3:31566234-31566253 Msa0808010:CDS 40.0%
GGGAAGACTAGTAGAATAGT+TGG - chr5_3:31566441-31566460 Msa0808010:CDS 40.0%
TTACCTCAACCAAAAGAACC+TGG - chr5_3:31566934-31566953 Msa0808010:intron 40.0%
!! AAACCAGGTTCTTTTGGTTG+AGG + chr5_3:31566940-31566959 None:intergenic 40.0%
TGGTTGTTGCATTGAAGGAG+AGG - chr5_3:31566047-31566066 Msa0808010:CDS 45.0%
ATCGAGACTTCTATTCGGCA+TGG + chr5_3:31566094-31566113 None:intergenic 45.0%
TTCAACATGTTGAAGCGCAC+AGG + chr5_3:31566264-31566283 None:intergenic 45.0%
TGCAGAGGGGATCAAATTGA+AGG - chr5_3:31566420-31566439 Msa0808010:CDS 45.0%
GCAGAGGGGATCAAATTGAA+GGG - chr5_3:31566421-31566440 Msa0808010:CDS 45.0%
TGTTGTAGGCTAGGAGATTG+TGG - chr5_3:31566761-31566780 Msa0808010:intron 45.0%
TGGTTGTTGCATTGAAGGAG+AGG - chr5_3:31566047-31566066 Msa0808010:CDS 45.0%
ATCGAGACTTCTATTCGGCA+TGG + chr5_3:31566094-31566113 None:intergenic 45.0%
TTCAACATGTTGAAGCGCAC+AGG + chr5_3:31566264-31566283 None:intergenic 45.0%
TGCAGAGGGGATCAAATTGA+AGG - chr5_3:31566420-31566439 Msa0808010:CDS 45.0%
GCAGAGGGGATCAAATTGAA+GGG - chr5_3:31566421-31566440 Msa0808010:CDS 45.0%
TGTTGTAGGCTAGGAGATTG+TGG - chr5_3:31566761-31566780 Msa0808010:intron 45.0%
GCATGGCTAGAATGTGCAGA+GGG - chr5_3:31566406-31566425 Msa0808010:CDS 50.0%
CATGGCTAGAATGTGCAGAG+GGG - chr5_3:31566407-31566426 Msa0808010:CDS 50.0%
! TTCAGGTGCCATGTAACCAC+TGG + chr5_3:31566545-31566564 None:intergenic 50.0%
GCATGGCTAGAATGTGCAGA+GGG - chr5_3:31566406-31566425 Msa0808010:CDS 50.0%
CATGGCTAGAATGTGCAGAG+GGG - chr5_3:31566407-31566426 Msa0808010:CDS 50.0%
! TTCAGGTGCCATGTAACCAC+TGG + chr5_3:31566545-31566564 None:intergenic 50.0%
GGCATGGCTAGAATGTGCAG+AGG - chr5_3:31566405-31566424 Msa0808010:CDS 55.0%
GGCTAGGAGATTGTGGAGAG+AGG - chr5_3:31566768-31566787 Msa0808010:intron 55.0%
GGCATGGCTAGAATGTGCAG+AGG - chr5_3:31566405-31566424 Msa0808010:CDS 55.0%
GGCTAGGAGATTGTGGAGAG+AGG - chr5_3:31566768-31566787 Msa0808010:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31566009 31567053 31566009 ID=Msa0808010;Name=Msa0808010
chr5_3 mRNA 31566009 31567053 31566009 ID=Msa0808010-mRNA-1;Parent=Msa0808010;Name=Msa0808010-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0.5|1|3|0|166
chr5_3 exon 31566936 31567053 31566936 ID=Msa0808010-mRNA-1:exon:10476;Parent=Msa0808010-mRNA-1
chr5_3 exon 31566366 31566463 31566366 ID=Msa0808010-mRNA-1:exon:10475;Parent=Msa0808010-mRNA-1
chr5_3 exon 31566009 31566293 31566009 ID=Msa0808010-mRNA-1:exon:10474;Parent=Msa0808010-mRNA-1
chr5_3 CDS 31566936 31567053 31566936 ID=Msa0808010-mRNA-1:cds;Parent=Msa0808010-mRNA-1
chr5_3 CDS 31566366 31566463 31566366 ID=Msa0808010-mRNA-1:cds;Parent=Msa0808010-mRNA-1
chr5_3 CDS 31566009 31566293 31566009 ID=Msa0808010-mRNA-1:cds;Parent=Msa0808010-mRNA-1
Gene Sequence

>Msa0808010

TTGTTGGTTGTTGCATTGAAGAATCTTGTTAAGGTTGTTGGTTGTTGCATTGAAGGAGAGGAGAAAATGTTACTCTATGAGTCCATGCCGAATAGAAGTCTCGATTTATTCATATTTGATGTATTTAGCTTTGGCGTGCTATTGCTAGAAATCATAAGCGGAAGAAGAAATAGGGCACTTACCTACCATGAACATGATCACAATCTTATTTGGCATGCTAGGAGATTGTGGAGAGAGGACATTTCACATGAATTGATTGATGATTGTTTAAGGGATTCATGTATTATATCTGAAACACTCCGTTGTATTAAAGTTGGTCTTTTATGTGTGCAACATGTTCTAGATGATAGGCCAAATATGACAACAACTGTTATGATTACTTTACCTCAACCAAAAGAACCTGGTTTCTTAAATCAAAGAGTCTCAATTGAAGAAACATCTTCAAGAGAAGAAATACCTTCAATCAATGGTATAACTATATCACGATTAAATGCTAGATAG
Protein sequence

>Msa0808010

LLVVALKNLVKVVGCCIEGEEKMLLYESMPNRSLDLFIFDVFSFGVLLLEIISGRRNRALTYHEHDHNLIWHARRLWREDISHELIDDCLRDSCIISETLRCIKVGLLCVQHVLDDRPNMTTTVMITLPQPKEPGFLNQRVSIEETSSREEIPSINGITISRLNAR*