Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185020 | XP_024627530.1 | 91.158 | 475 | 37 | 2 | 1 | 475 | 24 | 493 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185020 | sp|Q9ZWJ9|ARR2_ARATH | 30.597 | 268 | 171 | 6 | 20 | 285 | 26 | 280 | 5.70e-27 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1185020 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185020 | Msa1239010 | 0.811720 | 6.080828e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185020 | MtrunA17_Chr8g0350761 | 91.158 | 475 | 37 | 2 | 1 | 475 | 1 | 470 | 0.0 | 887 |
| Msa1185020 | MtrunA17_Chr4g0067981 | 31.655 | 278 | 151 | 7 | 20 | 287 | 33 | 281 | 4.54e-28 | 118 |
| Msa1185020 | MtrunA17_Chr3g0123131 | 31.008 | 258 | 152 | 8 | 20 | 272 | 15 | 251 | 1.07e-26 | 113 |
| Msa1185020 | MtrunA17_Chr8g0376881 | 31.102 | 254 | 155 | 9 | 20 | 272 | 27 | 261 | 5.81e-26 | 111 |
| Msa1185020 | MtrunA17_Chr1g0161431 | 30.350 | 257 | 158 | 5 | 20 | 272 | 13 | 252 | 1.93e-25 | 110 |
| Msa1185020 | MtrunA17_Chr7g0275401 | 27.402 | 281 | 185 | 5 | 21 | 299 | 8 | 271 | 2.63e-25 | 105 |
| Msa1185020 | MtrunA17_Chr3g0137101 | 28.516 | 256 | 163 | 6 | 21 | 272 | 11 | 250 | 2.64e-24 | 106 |
| Msa1185020 | MtrunA17_Chr4g0074401 | 26.766 | 269 | 155 | 5 | 20 | 275 | 19 | 258 | 3.34e-23 | 103 |
| Msa1185020 | MtrunA17_Chr2g0294911 | 28.253 | 269 | 171 | 5 | 20 | 287 | 31 | 278 | 7.41e-23 | 102 |
| Msa1185020 | MtrunA17_Chr4g0074411 | 27.203 | 261 | 161 | 5 | 20 | 275 | 20 | 256 | 2.04e-22 | 100 |
| Msa1185020 | MtrunA17_Chr1g0149841 | 28.352 | 261 | 153 | 6 | 21 | 272 | 8 | 243 | 1.02e-21 | 98.2 |
| Msa1185020 | MtrunA17_Chr7g0275891 | 25.170 | 294 | 173 | 7 | 21 | 292 | 8 | 276 | 1.97e-19 | 89.7 |
| Msa1185020 | MtrunA17_Chr4g0009851 | 24.803 | 254 | 143 | 5 | 21 | 272 | 14 | 221 | 6.59e-19 | 87.4 |
| Msa1185020 | MtrunA17_Chr1g0149851 | 27.046 | 281 | 168 | 6 | 21 | 283 | 8 | 269 | 1.52e-18 | 88.6 |
| Msa1185020 | MtrunA17_Chr4g0009901 | 24.906 | 265 | 151 | 7 | 20 | 283 | 12 | 229 | 2.68e-18 | 85.1 |
| Msa1185020 | MtrunA17_Chr4g0074421 | 26.066 | 211 | 115 | 6 | 69 | 269 | 3 | 182 | 3.07e-15 | 74.3 |
| Msa1185020 | MtrunA17_Chr2g0304841 | 30.252 | 119 | 82 | 1 | 21 | 139 | 21 | 138 | 1.77e-13 | 73.2 |
| Msa1185020 | MtrunA17_Chr8g0391911 | 24.354 | 271 | 145 | 6 | 20 | 269 | 11 | 242 | 3.81e-13 | 69.3 |
| Msa1185020 | MtrunA17_Chr6g0456631 | 34.426 | 122 | 76 | 3 | 20 | 139 | 11 | 130 | 5.41e-13 | 67.0 |
| Msa1185020 | MtrunA17_Chr3g0134481 | 30.328 | 122 | 84 | 1 | 21 | 142 | 11 | 131 | 5.42e-12 | 64.7 |
| Msa1185020 | MtrunA17_Chr8g0383961 | 32.258 | 124 | 80 | 2 | 22 | 142 | 18 | 140 | 7.19e-12 | 65.9 |
| Msa1185020 | MtrunA17_Chr4g0030271 | 30.469 | 128 | 84 | 3 | 18 | 142 | 85 | 210 | 2.92e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185020 | AT3G16857.1 | 27.473 | 273 | 185 | 6 | 20 | 285 | 35 | 301 | 1.36e-25 | 110 |
| Msa1185020 | AT3G16857.2 | 27.473 | 273 | 185 | 6 | 20 | 285 | 35 | 301 | 1.51e-25 | 110 |
| Msa1185020 | AT2G25180.1 | 28.352 | 261 | 149 | 6 | 21 | 272 | 16 | 247 | 2.63e-23 | 103 |
| Msa1185020 | AT1G67710.1 | 28.846 | 260 | 156 | 8 | 20 | 272 | 9 | 246 | 3.69e-22 | 100 |
| Msa1185020 | AT4G31920.1 | 26.562 | 256 | 154 | 4 | 21 | 275 | 16 | 238 | 4.11e-22 | 100 |
| Msa1185020 | AT3G16857.3 | 25.847 | 236 | 162 | 6 | 57 | 285 | 2 | 231 | 9.62e-18 | 86.7 |
| Msa1185020 | AT1G49190.1 | 26.374 | 273 | 172 | 11 | 20 | 285 | 32 | 282 | 1.44e-17 | 85.1 |
| Msa1185020 | AT2G01760.1 | 35.537 | 121 | 76 | 2 | 20 | 139 | 9 | 128 | 2.95e-15 | 77.8 |
| Msa1185020 | AT5G49240.1 | 23.485 | 264 | 155 | 6 | 21 | 269 | 41 | 272 | 6.45e-15 | 75.9 |
| Msa1185020 | AT2G40970.1 | 34.815 | 135 | 71 | 3 | 219 | 351 | 103 | 222 | 4.59e-13 | 69.7 |
| Msa1185020 | AT2G27070.1 | 25.455 | 275 | 174 | 11 | 19 | 272 | 13 | 277 | 1.89e-11 | 67.0 |
Find 115 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTAAACCAATTGCATTT+TGG | 0.190172 | 8_1:-21481978 | None:intergenic |
| ATATCACGGGCTCTTGGTTT+TGG | 0.233266 | 8_1:+21481763 | Msa1185020:CDS |
| ATATGATCTCATAGGGAAAA+TGG | 0.247633 | 8_1:+21481578 | Msa1185020:CDS |
| GAGTGCCTCAAACTATTTAC+AGG | 0.272286 | 8_1:+21482311 | Msa1185020:CDS |
| GTTGTCCGGAGTCACCTTTC+AGG | 0.273076 | 8_1:+21482865 | Msa1185020:CDS |
| ATTCTTCTTCTCACCGATAA+TGG | 0.281588 | 8_1:-21481508 | None:intergenic |
| CAAAATGCAATTGGTTTAGA+AGG | 0.283767 | 8_1:+21481979 | Msa1185020:CDS |
| AGTACTGAGTTATCTTTATC+AGG | 0.287313 | 8_1:-21482066 | None:intergenic |
| TGATTTACATAAGAAGTTCT+TGG | 0.299908 | 8_1:+21482119 | Msa1185020:CDS |
| ATAGTTTGAGGCACTCTCTT+TGG | 0.318103 | 8_1:-21482304 | None:intergenic |
| TCCGATGCATTATCCATTAT+CGG | 0.329441 | 8_1:+21481495 | Msa1185020:CDS |
| TTCATGGATGGTTGGCATTT+GGG | 0.333819 | 8_1:-21481937 | None:intergenic |
| ATTCATGGATGGTTGGCATT+TGG | 0.334762 | 8_1:-21481938 | None:intergenic |
| CTAATTAGGCCACTTTGATT+TGG | 0.347358 | 8_1:+21483373 | Msa1185020:intron |
| ATGGAAATATATGATCTCAT+AGG | 0.352251 | 8_1:+21481570 | Msa1185020:CDS |
| AAAACCAAGAGCCCGTGATA+TGG | 0.366143 | 8_1:-21481761 | None:intergenic |
| AGATCCTTCGGATCGGCATC+TGG | 0.369128 | 8_1:-21482777 | None:intergenic |
| ACCCTTCCACATTCATAATC+TGG | 0.374739 | 8_1:-21482278 | None:intergenic |
| TGGCTTTCTAAAACACCATT+TGG | 0.375414 | 8_1:-21481788 | None:intergenic |
| CTTCTTTCACTTGGATATGA+AGG | 0.378032 | 8_1:+21481049 | Msa1185020:CDS |
| TATATCATTGTGCGTGCGCT+CGG | 0.381082 | 8_1:+21483234 | Msa1185020:CDS |
| AAACCATTCTCCTGTATTCA+TGG | 0.384830 | 8_1:-21481953 | None:intergenic |
| CAATGACTGTTGTTTCATAT+CGG | 0.387086 | 8_1:-21481858 | None:intergenic |
| GCATCTGTCAGATGTGATTA+TGG | 0.389198 | 8_1:+21481903 | Msa1185020:CDS |
| TCCTCAGCTTCGCCGCTGAC+TGG | 0.399441 | 8_1:-21480946 | None:intergenic |
| CTCCTGCATTCAAAGATGGT+TGG | 0.406146 | 8_1:-21482002 | None:intergenic |
| TGGTTGGCATTTGGGACCCT+TGG | 0.407552 | 8_1:-21481929 | None:intergenic |
| TTTCTGATCTACATGACCTT+TGG | 0.412759 | 8_1:+21481818 | Msa1185020:CDS |
| AGATCATATATTTCCATGTC+TGG | 0.416853 | 8_1:-21481564 | None:intergenic |
| GACTTTGCTGTTCCAATGGC+AGG | 0.429908 | 8_1:-21482902 | None:intergenic |
| CACGCACAATGATATATTGC+TGG | 0.430398 | 8_1:-21483227 | None:intergenic |
| TTAGGCCACTTTGATTTGGC+AGG | 0.436132 | 8_1:+21483377 | Msa1185020:intron |
| CCTTCCATATCACGGGCTCT+TGG | 0.439741 | 8_1:+21481757 | Msa1185020:CDS |
| ATAACTCAGTACTCCTGAAC+AGG | 0.440547 | 8_1:+21482076 | Msa1185020:CDS |
| CAGTACTCCTGAACAGGAAA+AGG | 0.443080 | 8_1:+21482082 | Msa1185020:CDS |
| CTTGGAAAGCTCAAGTTGTC+CGG | 0.445175 | 8_1:+21482851 | Msa1185020:CDS |
| GACAGATGCCACACGAAGTC+AGG | 0.457217 | 8_1:-21481889 | None:intergenic |
| ATATCATTGTGCGTGCGCTC+GGG | 0.458334 | 8_1:+21483235 | Msa1185020:CDS |
| ATAATCTGGAATATTGTCTT+CGG | 0.459039 | 8_1:-21482264 | None:intergenic |
| CTCCTGTATTCATGGATGGT+TGG | 0.460192 | 8_1:-21481945 | None:intergenic |
| TATGATCTCATAGGGAAAAT+GGG | 0.464740 | 8_1:+21481579 | Msa1185020:CDS |
| GTTGGTTGTGGATGCTAGTT+CGG | 0.466592 | 8_1:+21481000 | Msa1185020:CDS |
| TTGGAAGCTGTTGAAATAGC+AGG | 0.471879 | 8_1:+21482138 | Msa1185020:CDS |
| AAATCAGCTGTCCCTGCCAT+TGG | 0.472311 | 8_1:+21482890 | Msa1185020:CDS |
| TGAACAGGAAAAGGAAAAGC+TGG | 0.472904 | 8_1:+21482091 | Msa1185020:CDS |
| AAGTGCAAATGGTAAAGAAC+AGG | 0.480421 | 8_1:+21482038 | Msa1185020:CDS |
| TGTAGATCAGAAATCTGAAC+TGG | 0.485157 | 8_1:-21481808 | None:intergenic |
| TCCAGTCAGCGGCGAAGCTG+AGG | 0.492869 | 8_1:+21480945 | Msa1185020:CDS |
| AAGACTCTCCGAAGTGCAAA+TGG | 0.496589 | 8_1:+21482027 | Msa1185020:CDS |
| TGCCAACCATCCATGAATAC+AGG | 0.500767 | 8_1:+21481943 | Msa1185020:CDS |
| TGGAAATATATGATCTCATA+GGG | 0.502031 | 8_1:+21481571 | Msa1185020:CDS |
| ACAAACCTGTAAATAGTTTG+AGG | 0.502869 | 8_1:-21482316 | None:intergenic |
| CATCTGCTGTATTCAAAACC+TGG | 0.512978 | 8_1:-21482995 | None:intergenic |
| TCTGGTGGTAGTGGCGGCAT+AGG | 0.521933 | 8_1:-21483101 | None:intergenic |
| ATAGGAAGCACCATGCATAA+TGG | 0.522991 | 8_1:-21483083 | None:intergenic |
| GGCCAACCATCTTTGAATGC+AGG | 0.525238 | 8_1:+21482000 | Msa1185020:CDS |
| GATGGAGAAGTTTCTAATGC+AGG | 0.527317 | 8_1:+21483014 | Msa1185020:CDS |
| TTCCAGATTATGAATGTGGA+AGG | 0.529710 | 8_1:+21482276 | Msa1185020:CDS |
| GAACCTACGTGCTACTGCAA+TGG | 0.529949 | 8_1:+21482671 | Msa1185020:CDS |
| CATTCTCCTGTATTCATGGA+TGG | 0.530842 | 8_1:-21481949 | None:intergenic |
| GTTCTTTACCATTTGCACTT+CGG | 0.531052 | 8_1:-21482035 | None:intergenic |
| AACTCAGCTGTTTACTGATG+AGG | 0.532043 | 8_1:+21483163 | Msa1185020:CDS |
| TACTAGAACTTACTGAAAGA+CGG | 0.532803 | 8_1:-21481618 | None:intergenic |
| CGATCCAGATGCCGATCCGA+AGG | 0.532999 | 8_1:+21482773 | Msa1185020:CDS |
| GGAGGTTCAGTTGCCAGACA+TGG | 0.533668 | 8_1:+21481551 | Msa1185020:CDS |
| ACAAAATTACTGAGATCCTT+CGG | 0.535642 | 8_1:-21482789 | None:intergenic |
| AGGTACCATGGTCCAGTAGC+CGG | 0.537071 | 8_1:+21480968 | Msa1185020:CDS |
| TGAGGTTAACCTTGTGCTTG+TGG | 0.538862 | 8_1:+21481530 | Msa1185020:CDS |
| GTTTATAAACCTACCAAGGC+TGG | 0.543151 | 8_1:-21482940 | None:intergenic |
| ACTAGAACTTACTGAAAGAC+GGG | 0.544678 | 8_1:-21481617 | None:intergenic |
| GCGCACACCACATCCAGCCT+TGG | 0.545507 | 8_1:+21482927 | Msa1185020:CDS |
| TCTTTCAATACTAGTTATGA+CGG | 0.548526 | 8_1:+21481461 | Msa1185020:intron |
| CGGACAACTTGAGCTTTCCA+AGG | 0.549307 | 8_1:-21482850 | None:intergenic |
| GCAGGACTTTGCTGTTCCAA+TGG | 0.549979 | 8_1:-21482906 | None:intergenic |
| AAACCTACCAAGGCTGGATG+TGG | 0.553582 | 8_1:-21482934 | None:intergenic |
| CTGATGAGGATTTGAAAATG+TGG | 0.559224 | 8_1:+21483177 | Msa1185020:CDS |
| AATATTCCAGATTATGAATG+TGG | 0.565218 | 8_1:+21482272 | Msa1185020:CDS |
| AGGCTGGATGTGGTGTGCGC+AGG | 0.568764 | 8_1:-21482924 | None:intergenic |
| CATCCATGAATACAGGAGAA+TGG | 0.569815 | 8_1:+21481950 | Msa1185020:CDS |
| AGTCAGCGGCGAAGCTGAGG+AGG | 0.585284 | 8_1:+21480948 | Msa1185020:CDS |
| ATAACACTCCTTCCATATCA+CGG | 0.587009 | 8_1:+21481749 | Msa1185020:CDS |
| ACACCACATCCAGCCTTGGT+AGG | 0.587197 | 8_1:+21482931 | Msa1185020:CDS |
| TCCACACTGCGAATCGCCAA+AGG | 0.589805 | 8_1:-21481834 | None:intergenic |
| TAACACTCCTTCCATATCAC+GGG | 0.590869 | 8_1:+21481750 | Msa1185020:CDS |
| ACCGATAATGGATAATGCAT+CGG | 0.594739 | 8_1:-21481496 | None:intergenic |
| TCCAGATTATGAATGTGGAA+GGG | 0.595446 | 8_1:+21482277 | Msa1185020:CDS |
| ACTTTGCTGTTCCAATGGCA+GGG | 0.595685 | 8_1:-21482901 | None:intergenic |
| CCAAGAGCCCGTGATATGGA+AGG | 0.596254 | 8_1:-21481757 | None:intergenic |
| CAGATACATCATCATTAACA+CGG | 0.604526 | 8_1:-21482962 | None:intergenic |
| GGACAACTTGAGCTTTCCAA+GGG | 0.606529 | 8_1:-21482849 | None:intergenic |
| TCTCGGACTAACAAAAGTCA+AGG | 0.607987 | 8_1:+21482717 | Msa1185020:CDS |
| AGATGTGATTATGGCAACCA+AGG | 0.609212 | 8_1:+21481912 | Msa1185020:CDS |
| ACCTTTGGCGATTCGCAGTG+TGG | 0.611049 | 8_1:+21481833 | Msa1185020:CDS |
| ATGTGGTTATCAACGATTCG+AGG | 0.613048 | 8_1:+21483194 | Msa1185020:CDS |
| CACGGTTTATAAACCTACCA+AGG | 0.615074 | 8_1:-21482944 | None:intergenic |
| TTACACCGGCTACTGGACCA+TGG | 0.619788 | 8_1:-21480973 | None:intergenic |
| AGTAGCCGGTGTAAAAGTGT+TGG | 0.620685 | 8_1:+21480982 | Msa1185020:CDS |
| GGTTAACCTTGTGCTTGTGG+AGG | 0.621345 | 8_1:+21481533 | Msa1185020:CDS |
| TGTATCTGAAAAGATCAGCC+AGG | 0.622080 | 8_1:+21482977 | Msa1185020:CDS |
| GATGTGATTATGGCAACCAA+GGG | 0.624431 | 8_1:+21481913 | Msa1185020:CDS |
| CATTGCCTGCCAAATCAAAG+TGG | 0.629641 | 8_1:-21483382 | None:intergenic |
| GAAGTGTCAAGAATATGCAC+AGG | 0.635227 | 8_1:-21482813 | None:intergenic |
| GTTGAAATAGCAGGAATCGA+CGG | 0.638995 | 8_1:+21482147 | Msa1185020:CDS |
| GTCTGACGAGTTCCAGTCAG+CGG | 0.643494 | 8_1:+21480934 | Msa1185020:CDS |
| TATCGGTGAGAAGAAGAATG+AGG | 0.648400 | 8_1:+21481512 | Msa1185020:CDS |
| GCGAAGCTGAGGAGGTACCA+TGG | 0.649372 | 8_1:+21480956 | Msa1185020:CDS |
| CGGTGTAAAAGTGTTGGTTG+TGG | 0.652064 | 8_1:+21480988 | Msa1185020:CDS |
| AAGCAGTACCTGACTTCGTG+TGG | 0.652087 | 8_1:+21481881 | Msa1185020:CDS |
| ATGTGAATGAATATGTGTCT+CGG | 0.664181 | 8_1:+21482700 | Msa1185020:CDS |
| ACTGAACCTCCACAAGCACA+AGG | 0.665135 | 8_1:-21481539 | None:intergenic |
| ATTACTGAGATCCTTCGGAT+CGG | 0.667987 | 8_1:-21482784 | None:intergenic |
| TGTAGACTCACTCGTGCTCG+CGG | 0.670245 | 8_1:-21483258 | None:intergenic |
| GTTCCATTGCAGTAGCACGT+AGG | 0.677485 | 8_1:-21482674 | None:intergenic |
| CATGTGCGAACCATTATGCA+TGG | 0.704435 | 8_1:+21483073 | Msa1185020:CDS |
| TCGCACATGTCAAAGCTCAG+CGG | 0.744624 | 8_1:-21483059 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTCAAAAATAAATAAAAA+TGG | - | chr8_1:21481427-21481446 | None:intergenic | 10.0% |
| !! | AACAAAAATGATAAATAAAA+AGG | - | chr8_1:21483321-21483340 | None:intergenic | 10.0% |
| !! | TTTGTTAAAAATTTCTAATT+AGG | + | chr8_1:21483359-21483378 | Msa1185020:intron | 10.0% |
| !! | ATCAATGTGATTATTCATTA+TGG | + | chr8_1:21481222-21481241 | Msa1185020:intron | 20.0% |
| !!! | TTTTCAATTTTTGCTTCTTT+AGG | + | chr8_1:21481379-21481398 | Msa1185020:intron | 20.0% |
| !!! | AATTTCAGTTATGTTTTAGA+AGG | + | chr8_1:21482538-21482557 | Msa1185020:intron | 20.0% |
| !! | AAACAATCAAATGTACTATT+AGG | - | chr8_1:21482631-21482650 | None:intergenic | 20.0% |
| !! | AGAACATCTGTAAATAATAA+TGG | - | chr8_1:21483298-21483317 | None:intergenic | 20.0% |
| !! | GCATTTTTGATACAATTGTT+CGG | - | chr8_1:21481030-21481049 | None:intergenic | 25.0% |
| !!! | TTTATCATATTCATTGACTC+TGG | + | chr8_1:21481261-21481280 | Msa1185020:intron | 25.0% |
| ! | GAAGCAAAAATTGAAAATCA+CGG | - | chr8_1:21481376-21481395 | None:intergenic | 25.0% |
| ! | TCTTTCAATACTAGTTATGA+CGG | + | chr8_1:21481461-21481480 | Msa1185020:intron | 25.0% |
| ! | ATGGAAATATATGATCTCAT+AGG | + | chr8_1:21481570-21481589 | Msa1185020:CDS | 25.0% |
| ! | TGGAAATATATGATCTCATA+GGG | + | chr8_1:21481571-21481590 | Msa1185020:CDS | 25.0% |
| !! | GTAAGTTCTAGTAATAACTT+TGG | + | chr8_1:21481628-21481647 | Msa1185020:intron | 25.0% |
| ! | TGATTTACATAAGAAGTTCT+TGG | + | chr8_1:21482119-21482138 | Msa1185020:CDS | 25.0% |
| !! | ATAATCTGGAATATTGTCTT+CGG | - | chr8_1:21482267-21482286 | None:intergenic | 25.0% |
| ! | AATATTCCAGATTATGAATG+TGG | + | chr8_1:21482272-21482291 | Msa1185020:CDS | 25.0% |
| !!! | TTTGTACACTTTTTACTAAC+CGG | + | chr8_1:21482380-21482399 | Msa1185020:intron | 25.0% |
| !! | TAAAGTCTGAAACTCAAAAT+AGG | + | chr8_1:21482438-21482457 | Msa1185020:intron | 25.0% |
| !!! | TCAAAACTTGTTTTTCTAGA+GGG | - | chr8_1:21482749-21482768 | None:intergenic | 25.0% |
| !!! | ATCAAAACTTGTTTTTCTAG+AGG | - | chr8_1:21482750-21482769 | None:intergenic | 25.0% |
| TCAAAAATGCTTCTTTCACT+TGG | + | chr8_1:21481040-21481059 | Msa1185020:CDS | 30.0% | |
| AAGGTAATTGACACTTATTC+TGG | + | chr8_1:21481068-21481087 | Msa1185020:intron | 30.0% | |
| ! | TGGAAATGTCTGAAACATTA+AGG | - | chr8_1:21481169-21481188 | None:intergenic | 30.0% |
| CTTCTTTAGGCTAAACTATT+GGG | + | chr8_1:21481392-21481411 | Msa1185020:intron | 30.0% | |
| AGATCATATATTTCCATGTC+TGG | - | chr8_1:21481567-21481586 | None:intergenic | 30.0% | |
| ATATGATCTCATAGGGAAAA+TGG | + | chr8_1:21481578-21481597 | Msa1185020:CDS | 30.0% | |
| TATGATCTCATAGGGAAAAT+GGG | + | chr8_1:21481579-21481598 | Msa1185020:CDS | 30.0% | |
| TACTAGAACTTACTGAAAGA+CGG | - | chr8_1:21481621-21481640 | None:intergenic | 30.0% | |
| !! | CAATGACTGTTGTTTCATAT+CGG | - | chr8_1:21481861-21481880 | None:intergenic | 30.0% |
| ! | TGGTTTTTCCAAAATGCAAT+TGG | + | chr8_1:21481970-21481989 | Msa1185020:CDS | 30.0% |
| ! | CTTCTAAACCAATTGCATTT+TGG | - | chr8_1:21481981-21482000 | None:intergenic | 30.0% |
| ! | CAAAATGCAATTGGTTTAGA+AGG | + | chr8_1:21481979-21481998 | Msa1185020:CDS | 30.0% |
| ! | AGTACTGAGTTATCTTTATC+AGG | - | chr8_1:21482069-21482088 | None:intergenic | 30.0% |
| ACAAACCTGTAAATAGTTTG+AGG | - | chr8_1:21482319-21482338 | None:intergenic | 30.0% | |
| ! | TACAGGTTTGTTCTTTGTAA+TGG | + | chr8_1:21482328-21482347 | Msa1185020:intron | 30.0% |
| !! | TCTGTTTCTGCATTATCATA+TGG | + | chr8_1:21482591-21482610 | Msa1185020:intron | 30.0% |
| ATGTGAATGAATATGTGTCT+CGG | + | chr8_1:21482700-21482719 | Msa1185020:CDS | 30.0% | |
| ACAAAATTACTGAGATCCTT+CGG | - | chr8_1:21482792-21482811 | None:intergenic | 30.0% | |
| CAGATACATCATCATTAACA+CGG | - | chr8_1:21482965-21482984 | None:intergenic | 30.0% | |
| !!! | TCATAGTATGCTTTTTCATC+TGG | - | chr8_1:21483122-21483141 | None:intergenic | 30.0% |
| CTTCTTTCACTTGGATATGA+AGG | + | chr8_1:21481049-21481068 | Msa1185020:CDS | 35.0% | |
| AGATACAACAGCTAGAAATG+TGG | - | chr8_1:21481189-21481208 | None:intergenic | 35.0% | |
| TTGTATGATGATCTTAAGCG+AGG | - | chr8_1:21481330-21481349 | None:intergenic | 35.0% | |
| GCTTCTTTAGGCTAAACTAT+TGG | + | chr8_1:21481391-21481410 | Msa1185020:intron | 35.0% | |
| TCCGATGCATTATCCATTAT+CGG | + | chr8_1:21481495-21481514 | Msa1185020:CDS | 35.0% | |
| !! | ACCGATAATGGATAATGCAT+CGG | - | chr8_1:21481499-21481518 | None:intergenic | 35.0% |
| ATTCTTCTTCTCACCGATAA+TGG | - | chr8_1:21481511-21481530 | None:intergenic | 35.0% | |
| ACTAGAACTTACTGAAAGAC+GGG | - | chr8_1:21481620-21481639 | None:intergenic | 35.0% | |
| ATAACACTCCTTCCATATCA+CGG | + | chr8_1:21481749-21481768 | Msa1185020:CDS | 35.0% | |
| !! | TGGCTTTCTAAAACACCATT+TGG | - | chr8_1:21481791-21481810 | None:intergenic | 35.0% |
| TGTAGATCAGAAATCTGAAC+TGG | - | chr8_1:21481811-21481830 | None:intergenic | 35.0% | |
| TTTCTGATCTACATGACCTT+TGG | + | chr8_1:21481818-21481837 | Msa1185020:CDS | 35.0% | |
| AAACCATTCTCCTGTATTCA+TGG | - | chr8_1:21481956-21481975 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTGCATTCAAAGA+TGG | - | chr8_1:21482009-21482028 | None:intergenic | 35.0% |
| GTTCTTTACCATTTGCACTT+CGG | - | chr8_1:21482038-21482057 | None:intergenic | 35.0% | |
| AAGTGCAAATGGTAAAGAAC+AGG | + | chr8_1:21482038-21482057 | Msa1185020:CDS | 35.0% | |
| ATTAATTTCTGCTGTGCTAG+TGG | + | chr8_1:21482194-21482213 | Msa1185020:intron | 35.0% | |
| TTCCAGATTATGAATGTGGA+AGG | + | chr8_1:21482276-21482295 | Msa1185020:CDS | 35.0% | |
| TCCAGATTATGAATGTGGAA+GGG | + | chr8_1:21482277-21482296 | Msa1185020:CDS | 35.0% | |
| AAACTCAAAATAGGCACACT+TGG | + | chr8_1:21482447-21482466 | Msa1185020:intron | 35.0% | |
| AACTCAAAATAGGCACACTT+GGG | + | chr8_1:21482448-21482467 | Msa1185020:intron | 35.0% | |
| !!! | TAGTATGCTTTTTCATCTGG+TGG | - | chr8_1:21483119-21483138 | None:intergenic | 35.0% |
| CTGATGAGGATTTGAAAATG+TGG | + | chr8_1:21483177-21483196 | Msa1185020:CDS | 35.0% | |
| ! | CTAATTAGGCCACTTTGATT+TGG | + | chr8_1:21483373-21483392 | Msa1185020:intron | 35.0% |
| ! | CACAACCAACACTTTTACAC+CGG | - | chr8_1:21480990-21481009 | None:intergenic | 40.0% |
| TATCGGTGAGAAGAAGAATG+AGG | + | chr8_1:21481512-21481531 | Msa1185020:CDS | 40.0% | |
| TAACACTCCTTCCATATCAC+GGG | + | chr8_1:21481750-21481769 | Msa1185020:CDS | 40.0% | |
| GCATCTGTCAGATGTGATTA+TGG | + | chr8_1:21481903-21481922 | Msa1185020:CDS | 40.0% | |
| AGATGTGATTATGGCAACCA+AGG | + | chr8_1:21481912-21481931 | Msa1185020:CDS | 40.0% | |
| GATGTGATTATGGCAACCAA+GGG | + | chr8_1:21481913-21481932 | Msa1185020:CDS | 40.0% | |
| TTCATGGATGGTTGGCATTT+GGG | - | chr8_1:21481940-21481959 | None:intergenic | 40.0% | |
| ATTCATGGATGGTTGGCATT+TGG | - | chr8_1:21481941-21481960 | None:intergenic | 40.0% | |
| CATTCTCCTGTATTCATGGA+TGG | - | chr8_1:21481952-21481971 | None:intergenic | 40.0% | |
| CATCCATGAATACAGGAGAA+TGG | + | chr8_1:21481950-21481969 | Msa1185020:CDS | 40.0% | |
| ATAACTCAGTACTCCTGAAC+AGG | + | chr8_1:21482076-21482095 | Msa1185020:CDS | 40.0% | |
| ! | AGCTTTTCCTTTTCCTGTTC+AGG | - | chr8_1:21482092-21482111 | None:intergenic | 40.0% |
| TGAACAGGAAAAGGAAAAGC+TGG | + | chr8_1:21482091-21482110 | Msa1185020:CDS | 40.0% | |
| TTGGAAGCTGTTGAAATAGC+AGG | + | chr8_1:21482138-21482157 | Msa1185020:CDS | 40.0% | |
| GTTGAAATAGCAGGAATCGA+CGG | + | chr8_1:21482147-21482166 | Msa1185020:CDS | 40.0% | |
| ACCCTTCCACATTCATAATC+TGG | - | chr8_1:21482281-21482300 | None:intergenic | 40.0% | |
| ! | ATAGTTTGAGGCACTCTCTT+TGG | - | chr8_1:21482307-21482326 | None:intergenic | 40.0% |
| GAGTGCCTCAAACTATTTAC+AGG | + | chr8_1:21482311-21482330 | Msa1185020:CDS | 40.0% | |
| ! | TTTTTACTAACCGGCATGTG+TGG | + | chr8_1:21482389-21482408 | Msa1185020:intron | 40.0% |
| TTTACATCAAGCAGTACGCT+TGG | - | chr8_1:21482422-21482441 | None:intergenic | 40.0% | |
| ACTCAAAATAGGCACACTTG+GGG | + | chr8_1:21482449-21482468 | Msa1185020:intron | 40.0% | |
| CAAACTTTCGTAATCCCCAA+TGG | - | chr8_1:21482497-21482516 | None:intergenic | 40.0% | |
| TCTCGGACTAACAAAAGTCA+AGG | + | chr8_1:21482717-21482736 | Msa1185020:CDS | 40.0% | |
| ATTACTGAGATCCTTCGGAT+CGG | - | chr8_1:21482787-21482806 | None:intergenic | 40.0% | |
| ! | GAAGTGTCAAGAATATGCAC+AGG | - | chr8_1:21482816-21482835 | None:intergenic | 40.0% |
| !!! | TTCTGCTACTTTTCTTCCCT+TGG | + | chr8_1:21482833-21482852 | Msa1185020:CDS | 40.0% |
| GTTTATAAACCTACCAAGGC+TGG | - | chr8_1:21482943-21482962 | None:intergenic | 40.0% | |
| CACGGTTTATAAACCTACCA+AGG | - | chr8_1:21482947-21482966 | None:intergenic | 40.0% | |
| TGTATCTGAAAAGATCAGCC+AGG | + | chr8_1:21482977-21482996 | Msa1185020:CDS | 40.0% | |
| CATCTGCTGTATTCAAAACC+TGG | - | chr8_1:21482998-21483017 | None:intergenic | 40.0% | |
| !!! | CAGGTTTTGAATACAGCAGA+TGG | + | chr8_1:21482996-21483015 | Msa1185020:CDS | 40.0% |
| GATGGAGAAGTTTCTAATGC+AGG | + | chr8_1:21483014-21483033 | Msa1185020:CDS | 40.0% | |
| !! | ATAGGAAGCACCATGCATAA+TGG | - | chr8_1:21483086-21483105 | None:intergenic | 40.0% |
| AACTCAGCTGTTTACTGATG+AGG | + | chr8_1:21483163-21483182 | Msa1185020:CDS | 40.0% | |
| ATGTGGTTATCAACGATTCG+AGG | + | chr8_1:21483194-21483213 | Msa1185020:CDS | 40.0% | |
| CACGCACAATGATATATTGC+TGG | - | chr8_1:21483230-21483249 | None:intergenic | 40.0% | |
| !! | AACACTTTTACACCGGCTAC+TGG | - | chr8_1:21480983-21481002 | None:intergenic | 45.0% |
| ! | AGTAGCCGGTGTAAAAGTGT+TGG | + | chr8_1:21480982-21481001 | Msa1185020:CDS | 45.0% |
| !! | CGGTGTAAAAGTGTTGGTTG+TGG | + | chr8_1:21480988-21481007 | Msa1185020:CDS | 45.0% |
| GTTGGTTGTGGATGCTAGTT+CGG | + | chr8_1:21481000-21481019 | Msa1185020:CDS | 45.0% | |
| TATGCTGCTGAACTACACTC+AGG | + | chr8_1:21481132-21481151 | Msa1185020:intron | 45.0% | |
| TGAACTACACTCAGGTTTCG+TGG | + | chr8_1:21481140-21481159 | Msa1185020:intron | 45.0% | |
| TGAGGTTAACCTTGTGCTTG+TGG | + | chr8_1:21481530-21481549 | Msa1185020:CDS | 45.0% | |
| AAAACCAAGAGCCCGTGATA+TGG | - | chr8_1:21481764-21481783 | None:intergenic | 45.0% | |
| ! | ATATCACGGGCTCTTGGTTT+TGG | + | chr8_1:21481763-21481782 | Msa1185020:CDS | 45.0% |
| !!! | CTCTTGGTTTTGGAGCCAAA+TGG | + | chr8_1:21481773-21481792 | Msa1185020:CDS | 45.0% |
| TGCCAACCATCCATGAATAC+AGG | + | chr8_1:21481943-21481962 | Msa1185020:CDS | 45.0% | |
| CTCCTGTATTCATGGATGGT+TGG | - | chr8_1:21481948-21481967 | None:intergenic | 45.0% | |
| CTCCTGCATTCAAAGATGGT+TGG | - | chr8_1:21482005-21482024 | None:intergenic | 45.0% | |
| AAGACTCTCCGAAGTGCAAA+TGG | + | chr8_1:21482027-21482046 | Msa1185020:CDS | 45.0% | |
| CAGTACTCCTGAACAGGAAA+AGG | + | chr8_1:21482082-21482101 | Msa1185020:CDS | 45.0% | |
| TTGTCGTTCTTGTGTGAAGC+TGG | + | chr8_1:21482240-21482259 | Msa1185020:intron | 45.0% | |
| ! | TGGACATTTTCCACACATGC+CGG | - | chr8_1:21482402-21482421 | None:intergenic | 45.0% |
| CTTTCGTAATCCCCAATGGT+GGG | - | chr8_1:21482493-21482512 | None:intergenic | 45.0% | |
| ACTTTCGTAATCCCCAATGG+TGG | - | chr8_1:21482494-21482513 | None:intergenic | 45.0% | |
| GGACAACTTGAGCTTTCCAA+GGG | - | chr8_1:21482852-21482871 | None:intergenic | 45.0% | |
| ! | CTTGGAAAGCTCAAGTTGTC+CGG | + | chr8_1:21482851-21482870 | Msa1185020:CDS | 45.0% |
| ! | TTTTGCCTGAAAGGTGACTC+CGG | - | chr8_1:21482873-21482892 | None:intergenic | 45.0% |
| !! | GACAGCTGATTTTGCCTGAA+AGG | - | chr8_1:21482882-21482901 | None:intergenic | 45.0% |
| !! | ACTTTGCTGTTCCAATGGCA+GGG | - | chr8_1:21482904-21482923 | None:intergenic | 45.0% |
| CATGTGCGAACCATTATGCA+TGG | + | chr8_1:21483073-21483092 | Msa1185020:CDS | 45.0% | |
| !!! | TTTTCATCTGGTGGTAGTGG+CGG | - | chr8_1:21483110-21483129 | None:intergenic | 45.0% |
| !!! | GCTTTTTCATCTGGTGGTAG+TGG | - | chr8_1:21483113-21483132 | None:intergenic | 45.0% |
| TATATCATTGTGCGTGCGCT+CGG | + | chr8_1:21483234-21483253 | Msa1185020:CDS | 45.0% | |
| !! | TTAGGCCACTTTGATTTGGC+AGG | + | chr8_1:21483377-21483396 | Msa1185020:intron | 45.0% |
| CATTGCCTGCCAAATCAAAG+TGG | - | chr8_1:21483385-21483404 | None:intergenic | 45.0% | |
| GGTTAACCTTGTGCTTGTGG+AGG | + | chr8_1:21481533-21481552 | Msa1185020:CDS | 50.0% | |
| ACTGAACCTCCACAAGCACA+AGG | - | chr8_1:21481542-21481561 | None:intergenic | 50.0% | |
| ATCTCAGCGACAAGCATGTG+AGG | - | chr8_1:21481672-21481691 | None:intergenic | 50.0% | |
| AAGCAGTACCTGACTTCGTG+TGG | + | chr8_1:21481881-21481900 | Msa1185020:CDS | 50.0% | |
| GGCCAACCATCTTTGAATGC+AGG | + | chr8_1:21482000-21482019 | Msa1185020:CDS | 50.0% | |
| ! | GAACCTACGTGCTACTGCAA+TGG | + | chr8_1:21482671-21482690 | Msa1185020:CDS | 50.0% |
| GTTCCATTGCAGTAGCACGT+AGG | - | chr8_1:21482677-21482696 | None:intergenic | 50.0% | |
| CGGACAACTTGAGCTTTCCA+AGG | - | chr8_1:21482853-21482872 | None:intergenic | 50.0% | |
| AAATCAGCTGTCCCTGCCAT+TGG | + | chr8_1:21482890-21482909 | Msa1185020:CDS | 50.0% | |
| !! | GACTTTGCTGTTCCAATGGC+AGG | - | chr8_1:21482905-21482924 | None:intergenic | 50.0% |
| !! | GCAGGACTTTGCTGTTCCAA+TGG | - | chr8_1:21482909-21482928 | None:intergenic | 50.0% |
| AAACCTACCAAGGCTGGATG+TGG | - | chr8_1:21482937-21482956 | None:intergenic | 50.0% | |
| TCGCACATGTCAAAGCTCAG+CGG | - | chr8_1:21483062-21483081 | None:intergenic | 50.0% | |
| ATATCATTGTGCGTGCGCTC+GGG | + | chr8_1:21483235-21483254 | Msa1185020:CDS | 50.0% | |
| GTCTGACGAGTTCCAGTCAG+CGG | + | chr8_1:21480934-21480953 | Msa1185020:CDS | 55.0% | |
| AGGTACCATGGTCCAGTAGC+CGG | + | chr8_1:21480968-21480987 | Msa1185020:CDS | 55.0% | |
| ! | TTACACCGGCTACTGGACCA+TGG | - | chr8_1:21480976-21480995 | None:intergenic | 55.0% |
| GGAGGTTCAGTTGCCAGACA+TGG | + | chr8_1:21481551-21481570 | Msa1185020:CDS | 55.0% | |
| CCAAGAGCCCGTGATATGGA+AGG | - | chr8_1:21481760-21481779 | None:intergenic | 55.0% | |
| CCTTCCATATCACGGGCTCT+TGG | + | chr8_1:21481757-21481776 | Msa1185020:CDS | 55.0% | |
| ACCTTTGGCGATTCGCAGTG+TGG | + | chr8_1:21481833-21481852 | Msa1185020:CDS | 55.0% | |
| TCCACACTGCGAATCGCCAA+AGG | - | chr8_1:21481837-21481856 | None:intergenic | 55.0% | |
| GACAGATGCCACACGAAGTC+AGG | - | chr8_1:21481892-21481911 | None:intergenic | 55.0% | |
| ! | TGGTTGGCATTTGGGACCCT+TGG | - | chr8_1:21481932-21481951 | None:intergenic | 55.0% |
| ATAGGCACACTTGGGGCAAC+TGG | + | chr8_1:21482456-21482475 | Msa1185020:intron | 55.0% | |
| AGATCCTTCGGATCGGCATC+TGG | - | chr8_1:21482780-21482799 | None:intergenic | 55.0% | |
| GTTGTCCGGAGTCACCTTTC+AGG | + | chr8_1:21482865-21482884 | Msa1185020:CDS | 55.0% | |
| ACACCACATCCAGCCTTGGT+AGG | + | chr8_1:21482931-21482950 | Msa1185020:CDS | 55.0% | |
| TGTAGACTCACTCGTGCTCG+CGG | - | chr8_1:21483261-21483280 | None:intergenic | 55.0% | |
| !! | GCGAAGCTGAGGAGGTACCA+TGG | + | chr8_1:21480956-21480975 | Msa1185020:CDS | 60.0% |
| TGCTCGAGGCTCCCACCATT+GGG | + | chr8_1:21482479-21482498 | Msa1185020:intron | 60.0% | |
| CGATCCAGATGCCGATCCGA+AGG | + | chr8_1:21482773-21482792 | Msa1185020:CDS | 60.0% | |
| !! | TCTGGTGGTAGTGGCGGCAT+AGG | - | chr8_1:21483104-21483123 | None:intergenic | 60.0% |
| TCCAGTCAGCGGCGAAGCTG+AGG | + | chr8_1:21480945-21480964 | Msa1185020:CDS | 65.0% | |
| TCCTCAGCTTCGCCGCTGAC+TGG | - | chr8_1:21480949-21480968 | None:intergenic | 65.0% | |
| AGTCAGCGGCGAAGCTGAGG+AGG | + | chr8_1:21480948-21480967 | Msa1185020:CDS | 65.0% | |
| CTTGGGGCAACTGGTGCTCG+AGG | + | chr8_1:21482465-21482484 | Msa1185020:intron | 65.0% | |
| GTGCTCGAGGCTCCCACCAT+TGG | + | chr8_1:21482478-21482497 | Msa1185020:intron | 65.0% | |
| GCTCGAGGCTCCCACCATTG+GGG | + | chr8_1:21482480-21482499 | Msa1185020:intron | 65.0% | |
| AGGCTGGATGTGGTGTGCGC+AGG | - | chr8_1:21482927-21482946 | None:intergenic | 65.0% | |
| GCGCACACCACATCCAGCCT+TGG | + | chr8_1:21482927-21482946 | Msa1185020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 21480929 | 21483421 | 21480929 | ID=Msa1185020;Name=Msa1185020 |
| chr8_1 | mRNA | 21480929 | 21483421 | 21480929 | ID=Msa1185020-mRNA-1;Parent=Msa1185020;Name=Msa1185020-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|0.83|0.8|0.83|6|0|494 |
| chr8_1 | exon | 21480929 | 21481070 | 21480929 | ID=Msa1185020-mRNA-1:exon:8105;Parent=Msa1185020-mRNA-1 |
| chr8_1 | exon | 21481475 | 21481627 | 21481475 | ID=Msa1185020-mRNA-1:exon:8106;Parent=Msa1185020-mRNA-1 |
| chr8_1 | exon | 21481731 | 21482168 | 21481731 | ID=Msa1185020-mRNA-1:exon:8107;Parent=Msa1185020-mRNA-1 |
| chr8_1 | exon | 21482259 | 21482332 | 21482259 | ID=Msa1185020-mRNA-1:exon:8108;Parent=Msa1185020-mRNA-1 |
| chr8_1 | exon | 21482654 | 21483290 | 21482654 | ID=Msa1185020-mRNA-1:exon:8109;Parent=Msa1185020-mRNA-1 |
| chr8_1 | exon | 21483381 | 21483421 | 21483381 | ID=Msa1185020-mRNA-1:exon:8110;Parent=Msa1185020-mRNA-1 |
| chr8_1 | CDS | 21480929 | 21481070 | 21480929 | ID=Msa1185020-mRNA-1:cds;Parent=Msa1185020-mRNA-1 |
| chr8_1 | CDS | 21481475 | 21481627 | 21481475 | ID=Msa1185020-mRNA-1:cds;Parent=Msa1185020-mRNA-1 |
| chr8_1 | CDS | 21481731 | 21482168 | 21481731 | ID=Msa1185020-mRNA-1:cds;Parent=Msa1185020-mRNA-1 |
| chr8_1 | CDS | 21482259 | 21482332 | 21482259 | ID=Msa1185020-mRNA-1:cds;Parent=Msa1185020-mRNA-1 |
| chr8_1 | CDS | 21482654 | 21483290 | 21482654 | ID=Msa1185020-mRNA-1:cds;Parent=Msa1185020-mRNA-1 |
| chr8_1 | CDS | 21483381 | 21483421 | 21483381 | ID=Msa1185020-mRNA-1:cds;Parent=Msa1185020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
