Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239010 | XP_024627530.1 | 91.368 | 475 | 36 | 2 | 1 | 475 | 24 | 493 | 0.0 | 891 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239010 | sp|B8AEH1|ORR23_ORYSI | 29.749 | 279 | 185 | 6 | 10 | 287 | 13 | 281 | 6.69e-27 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239010 | A0A072TZK7 | 91.368 | 475 | 36 | 2 | 1 | 475 | 1 | 470 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1239010 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185020 | Msa1239010 | 0.811720 | 6.080828e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239010 | MtrunA17_Chr8g0350761 | 91.368 | 475 | 36 | 2 | 1 | 475 | 1 | 470 | 0.0 | 889 |
| Msa1239010 | MtrunA17_Chr4g0067981 | 31.852 | 270 | 161 | 6 | 20 | 287 | 33 | 281 | 4.18e-28 | 118 |
| Msa1239010 | MtrunA17_Chr3g0123131 | 30.620 | 258 | 153 | 8 | 20 | 272 | 15 | 251 | 4.67e-26 | 111 |
| Msa1239010 | MtrunA17_Chr7g0275401 | 26.429 | 280 | 189 | 4 | 21 | 299 | 8 | 271 | 1.45e-25 | 106 |
| Msa1239010 | MtrunA17_Chr1g0161431 | 28.462 | 260 | 159 | 4 | 20 | 272 | 13 | 252 | 2.21e-25 | 109 |
| Msa1239010 | MtrunA17_Chr8g0376881 | 29.502 | 261 | 150 | 7 | 20 | 272 | 27 | 261 | 1.11e-24 | 107 |
| Msa1239010 | MtrunA17_Chr3g0137101 | 28.125 | 256 | 164 | 6 | 21 | 272 | 11 | 250 | 2.13e-23 | 103 |
| Msa1239010 | MtrunA17_Chr2g0294911 | 28.253 | 269 | 171 | 5 | 20 | 287 | 31 | 278 | 3.53e-23 | 103 |
| Msa1239010 | MtrunA17_Chr1g0149841 | 28.736 | 261 | 152 | 6 | 21 | 272 | 8 | 243 | 1.38e-22 | 100 |
| Msa1239010 | MtrunA17_Chr4g0074401 | 29.457 | 258 | 162 | 7 | 20 | 275 | 19 | 258 | 2.13e-22 | 100 |
| Msa1239010 | MtrunA17_Chr2g0304841 | 28.185 | 259 | 165 | 7 | 21 | 272 | 21 | 265 | 2.88e-22 | 100 |
| Msa1239010 | MtrunA17_Chr4g0074411 | 26.538 | 260 | 162 | 4 | 21 | 275 | 21 | 256 | 4.35e-22 | 99.8 |
| Msa1239010 | MtrunA17_Chr7g0275891 | 25.170 | 294 | 173 | 7 | 21 | 292 | 8 | 276 | 4.59e-20 | 91.7 |
| Msa1239010 | MtrunA17_Chr1g0149851 | 26.481 | 287 | 162 | 6 | 21 | 283 | 8 | 269 | 9.83e-19 | 89.0 |
| Msa1239010 | MtrunA17_Chr4g0074421 | 26.238 | 202 | 126 | 3 | 69 | 269 | 3 | 182 | 2.47e-15 | 74.7 |
| Msa1239010 | MtrunA17_Chr6g0456631 | 33.607 | 122 | 77 | 3 | 20 | 139 | 11 | 130 | 1.04e-11 | 63.5 |
| Msa1239010 | MtrunA17_Chr3g0134481 | 29.508 | 122 | 85 | 1 | 21 | 142 | 11 | 131 | 1.89e-11 | 63.2 |
| Msa1239010 | MtrunA17_Chr4g0030271 | 31.250 | 128 | 83 | 3 | 18 | 142 | 85 | 210 | 4.28e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239010 | AT3G16857.2 | 27.839 | 273 | 184 | 6 | 20 | 285 | 35 | 301 | 3.23e-26 | 113 |
| Msa1239010 | AT3G16857.1 | 27.839 | 273 | 184 | 6 | 20 | 285 | 35 | 301 | 3.49e-26 | 112 |
| Msa1239010 | AT2G25180.1 | 27.626 | 257 | 156 | 4 | 21 | 272 | 16 | 247 | 1.52e-22 | 101 |
| Msa1239010 | AT4G31920.1 | 26.953 | 256 | 153 | 4 | 21 | 275 | 16 | 238 | 2.08e-22 | 100 |
| Msa1239010 | AT2G01760.1 | 26.733 | 303 | 200 | 9 | 20 | 319 | 9 | 292 | 4.02e-22 | 98.6 |
| Msa1239010 | AT1G67710.1 | 28.517 | 263 | 153 | 8 | 20 | 272 | 9 | 246 | 2.45e-21 | 97.4 |
| Msa1239010 | AT3G16857.3 | 26.271 | 236 | 161 | 6 | 57 | 285 | 2 | 231 | 1.37e-18 | 89.4 |
| Msa1239010 | AT1G49190.1 | 26.007 | 273 | 173 | 10 | 20 | 285 | 32 | 282 | 1.28e-17 | 85.5 |
| Msa1239010 | AT5G07210.2 | 26.182 | 275 | 169 | 7 | 19 | 272 | 13 | 274 | 1.09e-16 | 83.6 |
| Msa1239010 | AT3G62670.1 | 25.746 | 268 | 162 | 7 | 23 | 283 | 42 | 279 | 7.00e-15 | 77.0 |
| Msa1239010 | AT5G49240.1 | 23.485 | 264 | 155 | 6 | 21 | 269 | 41 | 272 | 7.92e-15 | 75.5 |
| Msa1239010 | AT5G07210.1 | 26.855 | 283 | 165 | 10 | 19 | 272 | 13 | 282 | 1.65e-14 | 76.6 |
| Msa1239010 | AT2G27070.1 | 25.091 | 275 | 175 | 10 | 19 | 272 | 13 | 277 | 1.36e-12 | 70.5 |
| Msa1239010 | AT2G40970.1 | 34.074 | 135 | 72 | 3 | 219 | 351 | 103 | 222 | 4.15e-12 | 66.6 |
| Msa1239010 | AT4G00760.1 | 29.902 | 204 | 132 | 6 | 40 | 238 | 1 | 198 | 1.05e-11 | 66.6 |
Find 112 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTAGATCAATTGCATTT+TGG | 0.194106 | 8_2:+20013522 | None:intergenic |
| ATATCACGGGCTCTTGGTTT+TGG | 0.233266 | 8_2:-20013737 | Msa1239010:CDS |
| GAGTGCCTCAAACTATTTAC+AGG | 0.272286 | 8_2:-20013189 | Msa1239010:intron |
| GTTGTCCGGAGTCACCTTTC+AGG | 0.273076 | 8_2:-20012645 | Msa1239010:CDS |
| TGATTTACATATGAAGTTCT+TGG | 0.275930 | 8_2:-20013381 | Msa1239010:CDS |
| AGTACTGAGTTATCTTTATC+AGG | 0.287313 | 8_2:+20013434 | None:intergenic |
| AGCTCATATATTTCCATATC+TGG | 0.292314 | 8_2:+20013936 | None:intergenic |
| ATTCTTCTTATCACAGATAA+TGG | 0.300167 | 8_2:+20013992 | None:intergenic |
| ATAGTTTGAGGCACTCTCTT+TGG | 0.318103 | 8_2:+20013196 | None:intergenic |
| ATATGAGCTCGTAGGCAAAA+TGG | 0.325806 | 8_2:-20013922 | Msa1239010:CDS |
| TTCATGGATGGTTGGCATTT+GGG | 0.333819 | 8_2:+20013563 | None:intergenic |
| ATTCATGGATGGTTGGCATT+TGG | 0.334762 | 8_2:+20013562 | None:intergenic |
| CTAATTAGGCCACTTTGATT+TGG | 0.347358 | 8_2:-20012134 | Msa1239010:intron |
| AAAACCAAGAGCCCGTGATA+TGG | 0.366143 | 8_2:+20013739 | None:intergenic |
| AGATCCTTCGGATCGGCATC+TGG | 0.369128 | 8_2:+20012733 | None:intergenic |
| GGAGGTTCAATTGCCAGATA+TGG | 0.374082 | 8_2:-20013949 | Msa1239010:CDS |
| ACCCTTCCACATTCATAATC+TGG | 0.374739 | 8_2:+20013222 | None:intergenic |
| TGGCTTTCTAAAACACCATT+TGG | 0.375414 | 8_2:+20013712 | None:intergenic |
| CTTCTTTCACTTGGATATGA+AGG | 0.378032 | 8_2:-20014434 | Msa1239010:intron |
| CACGCGCAATGATATATTAC+TGG | 0.385141 | 8_2:+20012283 | None:intergenic |
| CAATGACTGTTGTTTCATAT+CGG | 0.387086 | 8_2:+20013642 | None:intergenic |
| AAACCATTCTCCTGTATTCA+TGG | 0.387667 | 8_2:+20013547 | None:intergenic |
| GCATCTGTCAGATGTGATTA+TGG | 0.389198 | 8_2:-20013597 | Msa1239010:CDS |
| TATATCATTGCGCGTGCGCT+CGG | 0.390639 | 8_2:-20012276 | Msa1239010:CDS |
| TCCTCAGCTTCGCCGCTGAC+TGG | 0.399441 | 8_2:+20014537 | None:intergenic |
| CTCCTGCATTCAAAGATGGT+TGG | 0.406146 | 8_2:+20013498 | None:intergenic |
| TGGTTGGCATTTGGGACCCT+TGG | 0.407552 | 8_2:+20013571 | None:intergenic |
| TTTCTGATCTACATGACCTT+TGG | 0.412759 | 8_2:-20013682 | Msa1239010:CDS |
| GACTTTGCTGTTCCAATGGC+AGG | 0.429908 | 8_2:+20012608 | None:intergenic |
| TTAGGCCACTTTGATTTGGC+AGG | 0.436132 | 8_2:-20012130 | Msa1239010:intron |
| CAAAATGCAATTGATCTAGA+AGG | 0.439563 | 8_2:-20013521 | Msa1239010:CDS |
| CCTTCCATATCACGGGCTCT+TGG | 0.439741 | 8_2:-20013743 | Msa1239010:CDS |
| ATAACTCAGTACTCCTGAAC+AGG | 0.440547 | 8_2:-20013424 | Msa1239010:CDS |
| CAGTACTCCTGAACAGGAAA+AGG | 0.443080 | 8_2:-20013418 | Msa1239010:CDS |
| CTTGGAAAGCTCAAGTTGTC+CGG | 0.445175 | 8_2:-20012659 | Msa1239010:CDS |
| TATGAGCTCGTAGGCAAAAT+GGG | 0.452911 | 8_2:-20013921 | Msa1239010:CDS |
| GACAGATGCCACACGAAGTC+AGG | 0.457217 | 8_2:+20013611 | None:intergenic |
| ATAATCTGGAATATTGTCTT+CGG | 0.459039 | 8_2:+20013236 | None:intergenic |
| CTCCTGTATTCATGGATGGT+TGG | 0.460192 | 8_2:+20013555 | None:intergenic |
| GTTGGTTGTGGATGCTAGTT+CGG | 0.466592 | 8_2:-20014483 | Msa1239010:CDS |
| ATATCATTGCGCGTGCGCTC+GGG | 0.470765 | 8_2:-20012275 | Msa1239010:CDS |
| TTGGAAGCTGTTGAAATAGC+AGG | 0.471879 | 8_2:-20013362 | Msa1239010:CDS |
| AAATCAGCTGTCCCTGCCAT+TGG | 0.472311 | 8_2:-20012620 | Msa1239010:CDS |
| TGAACAGGAAAAGGAAAAGC+TGG | 0.472904 | 8_2:-20013409 | Msa1239010:CDS |
| AAGTGCAAATGGTAAAGAAC+AGG | 0.480421 | 8_2:-20013462 | Msa1239010:CDS |
| TGTAGATCAGAAATCTGAAC+TGG | 0.485157 | 8_2:+20013692 | None:intergenic |
| TCCAGTCAGCGGCGAAGCTG+AGG | 0.492869 | 8_2:-20014538 | Msa1239010:CDS |
| AAGACTCTCCGAAGTGCAAA+TGG | 0.496589 | 8_2:-20013473 | Msa1239010:CDS |
| TGCCAACCATCCATGAATAC+AGG | 0.500767 | 8_2:-20013557 | Msa1239010:CDS |
| ACAAACCTGTAAATAGTTTG+AGG | 0.502869 | 8_2:+20013184 | None:intergenic |
| CATCTGCTGTATTCAAAACC+TGG | 0.512978 | 8_2:+20012515 | None:intergenic |
| CTGATGAGGATTTGAATATG+TGG | 0.519558 | 8_2:-20012333 | Msa1239010:CDS |
| TCTGGTGGTAGTGGCGGCAT+AGG | 0.521933 | 8_2:+20012409 | None:intergenic |
| ATAGGAAGCACCATGCATAA+TGG | 0.522991 | 8_2:+20012427 | None:intergenic |
| GGCCAACCATCTTTGAATGC+AGG | 0.525238 | 8_2:-20013500 | Msa1239010:CDS |
| GATGGAGAAGTTTCTAATGC+AGG | 0.527317 | 8_2:-20012496 | Msa1239010:CDS |
| TTCCAGATTATGAATGTGGA+AGG | 0.529710 | 8_2:-20013224 | Msa1239010:CDS |
| GAACCTACGTGCTACTGCAA+TGG | 0.529949 | 8_2:-20012839 | Msa1239010:CDS |
| CATTCTCCTGTATTCATGGA+TGG | 0.530842 | 8_2:+20013551 | None:intergenic |
| GTTCTTTACCATTTGCACTT+CGG | 0.531052 | 8_2:+20013465 | None:intergenic |
| AACTCAGCTGTTTACTGATG+AGG | 0.532043 | 8_2:-20012347 | Msa1239010:CDS |
| CGATCCAGATGCCGATCCGA+AGG | 0.532999 | 8_2:-20012737 | Msa1239010:CDS |
| ACAAAATTACTGAGATCCTT+CGG | 0.535642 | 8_2:+20012721 | None:intergenic |
| AGGTACCATGGTCCAGTAGC+CGG | 0.537071 | 8_2:-20014515 | Msa1239010:CDS |
| TGAGGTTAACCTTGTGCTTG+TGG | 0.538862 | 8_2:-20013970 | Msa1239010:CDS |
| GTTTATAAACCTACCAAGGC+TGG | 0.543151 | 8_2:+20012570 | None:intergenic |
| ACTAGAACTTACTGAAAGAC+GGG | 0.545088 | 8_2:+20013883 | None:intergenic |
| GCGCACACCACATCCAGCCT+TGG | 0.545507 | 8_2:-20012583 | Msa1239010:CDS |
| CGGACAACTTGAGCTTTCCA+AGG | 0.549307 | 8_2:+20012660 | None:intergenic |
| GCAGGACTTTGCTGTTCCAA+TGG | 0.549979 | 8_2:+20012604 | None:intergenic |
| AAACCTACCAAGGCTGGATG+TGG | 0.553582 | 8_2:+20012576 | None:intergenic |
| TACTAGAACTTACTGAAAGA+CGG | 0.553968 | 8_2:+20013882 | None:intergenic |
| AATATTCCAGATTATGAATG+TGG | 0.565218 | 8_2:-20013228 | Msa1239010:CDS |
| AGGCTGGATGTGGTGTGCGC+AGG | 0.568764 | 8_2:+20012586 | None:intergenic |
| CATCCATGAATACAGGAGAA+TGG | 0.569815 | 8_2:-20013550 | Msa1239010:CDS |
| AGTCAGCGGCGAAGCTGAGG+AGG | 0.585284 | 8_2:-20014535 | Msa1239010:CDS |
| ACACCACATCCAGCCTTGGT+AGG | 0.587197 | 8_2:-20012579 | Msa1239010:CDS |
| ATGACACTCCTTCCATATCA+CGG | 0.589305 | 8_2:-20013751 | Msa1239010:CDS |
| TCCACACTGCGAATCGCCAA+AGG | 0.589805 | 8_2:+20013666 | None:intergenic |
| TGACACTCCTTCCATATCAC+GGG | 0.590869 | 8_2:-20013750 | Msa1239010:CDS |
| TCCAGATTATGAATGTGGAA+GGG | 0.595446 | 8_2:-20013223 | Msa1239010:CDS |
| ACTTTGCTGTTCCAATGGCA+GGG | 0.595685 | 8_2:+20012609 | None:intergenic |
| CCAAGAGCCCGTGATATGGA+AGG | 0.596254 | 8_2:+20013743 | None:intergenic |
| CAGATACATCATCATTAACA+CGG | 0.604526 | 8_2:+20012548 | None:intergenic |
| GGACAACTTGAGCTTTCCAA+GGG | 0.606529 | 8_2:+20012661 | None:intergenic |
| TCTCGGACTAACAAAAGTCA+AGG | 0.607987 | 8_2:-20012793 | Msa1239010:CDS |
| AGATGTGATTATGGCAACCA+AGG | 0.609212 | 8_2:-20013588 | Msa1239010:CDS |
| ACCTTTGGCGATTCGCAGTG+TGG | 0.611049 | 8_2:-20013667 | Msa1239010:CDS |
| CACGGTTTATAAACCTACCA+AGG | 0.615074 | 8_2:+20012566 | None:intergenic |
| TTACACCGGCTACTGGACCA+TGG | 0.619788 | 8_2:+20014510 | None:intergenic |
| ACAGATAATGGATAATGCAT+CGG | 0.619908 | 8_2:+20014004 | None:intergenic |
| AGTAGCCGGTGTAAAAGTGT+TGG | 0.620685 | 8_2:-20014501 | Msa1239010:CDS |
| GGTTAACCTTGTGCTTGTGG+AGG | 0.621345 | 8_2:-20013967 | Msa1239010:CDS |
| TGTATCTGAAAAGATCAGCC+AGG | 0.622080 | 8_2:-20012533 | Msa1239010:CDS |
| ATGTGGTTATCAACGATTCG+AGG | 0.622106 | 8_2:-20012316 | Msa1239010:CDS |
| GATGTGATTATGGCAACCAA+GGG | 0.624431 | 8_2:-20013587 | Msa1239010:CDS |
| CATTGCCTGCCAAATCAAAG+TGG | 0.629641 | 8_2:+20012125 | None:intergenic |
| GAAGTGTCAAGAATATGCAC+AGG | 0.635227 | 8_2:+20012697 | None:intergenic |
| GTTGAAATAGCAGGAATCGA+CGG | 0.638995 | 8_2:-20013353 | Msa1239010:intron |
| GTCTGACGAGTTCCAGTCAG+CGG | 0.643494 | 8_2:-20014549 | Msa1239010:CDS |
| GCGAAGCTGAGGAGGTACCA+TGG | 0.649372 | 8_2:-20014527 | Msa1239010:CDS |
| CGGTGTAAAAGTGTTGGTTG+TGG | 0.652064 | 8_2:-20014495 | Msa1239010:CDS |
| AAGCAGTACCTGACTTCGTG+TGG | 0.652087 | 8_2:-20013619 | Msa1239010:CDS |
| ATGGAAATATATGAGCTCGT+AGG | 0.659549 | 8_2:-20013930 | Msa1239010:CDS |
| TATCTGTGATAAGAAGAATG+AGG | 0.663606 | 8_2:-20013988 | Msa1239010:CDS |
| ATGTGAATGAATATGTGTCT+CGG | 0.664181 | 8_2:-20012810 | Msa1239010:CDS |
| ATTGAACCTCCACAAGCACA+AGG | 0.667617 | 8_2:+20013961 | None:intergenic |
| ATTACTGAGATCCTTCGGAT+CGG | 0.667987 | 8_2:+20012726 | None:intergenic |
| TGTAGACTCACTCGTGCTCG+CGG | 0.670245 | 8_2:+20012252 | None:intergenic |
| GTTCCATTGCAGTAGCACGT+AGG | 0.677485 | 8_2:+20012836 | None:intergenic |
| CATGTGCGAACCATTATGCA+TGG | 0.704435 | 8_2:-20012437 | Msa1239010:CDS |
| TCGCACATGTCAAAGCTCAG+CGG | 0.744624 | 8_2:+20012451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTCAAAAATAAATAAAAA+TGG | + | chr8_2:20012589-20012608 | None:intergenic | 10.0% |
| !! | AACAAAAATGATAAATAAAA+AGG | + | chr8_2:20014473-20014492 | None:intergenic | 10.0% |
| !! | TTTGTTAAAAATTTCTAATT+AGG | - | chr8_2:20014514-20014533 | Msa1239010:CDS | 10.0% |
| !!! | AATAATCATATTGATTTCTA+TGG | + | chr8_2:20012396-20012415 | None:intergenic | 15.0% |
| !! | ATCAATATGATTATTCATTA+TGG | - | chr8_2:20012401-20012420 | Msa1239010:CDS | 15.0% |
| !!! | TTTTTAATTTTTGCTTCTTA+AGG | - | chr8_2:20012541-20012560 | Msa1239010:CDS | 15.0% |
| !! | AGAATATCTGTAAATAATAA+TGG | + | chr8_2:20014450-20014469 | None:intergenic | 15.0% |
| !! | GAAGCAAAAATTAAAAATCA+CGG | + | chr8_2:20012538-20012557 | None:intergenic | 20.0% |
| !!! | GATAAGTTTTTTTATGCAAA+AGG | - | chr8_2:20014292-20014311 | Msa1239010:intron | 20.0% |
| !! | GCATTTTTGATACAATTGTT+CGG | + | chr8_2:20012209-20012228 | None:intergenic | 25.0% |
| !! | TGGAAATATCTGAAACTTTA+AGG | + | chr8_2:20012349-20012368 | None:intergenic | 25.0% |
| ! | TAGATAAACAGCTAGAAATA+TGG | + | chr8_2:20012369-20012388 | None:intergenic | 25.0% |
| ! | ATTCTTCTTATCACAGATAA+TGG | + | chr8_2:20012673-20012692 | None:intergenic | 25.0% |
| ! | TGATTTACATATGAAGTTCT+TGG | - | chr8_2:20013281-20013300 | Msa1239010:intron | 25.0% |
| !! | ATAATCTGGAATATTGTCTT+CGG | + | chr8_2:20013429-20013448 | None:intergenic | 25.0% |
| ! | AATATTCCAGATTATGAATG+TGG | - | chr8_2:20013434-20013453 | Msa1239010:CDS | 25.0% |
| !! | TAAAGTCTGAAACTCAAAAT+AGG | - | chr8_2:20013600-20013619 | Msa1239010:CDS | 25.0% |
| !!! | AATTTCAGTTATGTTTTAGC+AGG | - | chr8_2:20013690-20013709 | Msa1239010:CDS | 25.0% |
| !! | AAACAATCAAATGTGCTATT+AGG | + | chr8_2:20013783-20013802 | None:intergenic | 25.0% |
| !!! | TCAAAACTTGTTTTTCTAGA+GGG | + | chr8_2:20013901-20013920 | None:intergenic | 25.0% |
| !!! | ATCAAAACTTGTTTTTCTAG+AGG | + | chr8_2:20013902-20013921 | None:intergenic | 25.0% |
| TCAAAAATGCTTCTTTCACT+TGG | - | chr8_2:20012219-20012238 | Msa1239010:intron | 30.0% | |
| AAGGTAATTGACACTTATTC+TGG | - | chr8_2:20012247-20012266 | Msa1239010:CDS | 30.0% | |
| CTTCTTAAGGCTAAACTATT+GGG | - | chr8_2:20012554-20012573 | Msa1239010:CDS | 30.0% | |
| !! | ACAGATAATGGATAATGCAT+CGG | + | chr8_2:20012661-20012680 | None:intergenic | 30.0% |
| TATCTGTGATAAGAAGAATG+AGG | - | chr8_2:20012674-20012693 | Msa1239010:CDS | 30.0% | |
| AGCTCATATATTTCCATATC+TGG | + | chr8_2:20012729-20012748 | None:intergenic | 30.0% | |
| TACTAGAACTTACTGAAAGA+CGG | + | chr8_2:20012783-20012802 | None:intergenic | 30.0% | |
| !! | CAATGACTGTTGTTTCATAT+CGG | + | chr8_2:20013023-20013042 | None:intergenic | 30.0% |
| ! | CTTCTAGATCAATTGCATTT+TGG | + | chr8_2:20013143-20013162 | None:intergenic | 30.0% |
| CAAAATGCAATTGATCTAGA+AGG | - | chr8_2:20013141-20013160 | Msa1239010:intron | 30.0% | |
| ! | AGTACTGAGTTATCTTTATC+AGG | + | chr8_2:20013231-20013250 | None:intergenic | 30.0% |
| ACAAACCTGTAAATAGTTTG+AGG | + | chr8_2:20013481-20013500 | None:intergenic | 30.0% | |
| ! | TACAGGTTTGTTCTTTGTAA+TGG | - | chr8_2:20013490-20013509 | Msa1239010:CDS | 30.0% |
| ! | TTTTTAATAACCGACATGTG+TGG | - | chr8_2:20013551-20013570 | Msa1239010:CDS | 30.0% |
| ATGTGAATGAATATGTGTCT+CGG | - | chr8_2:20013852-20013871 | Msa1239010:intron | 30.0% | |
| ACAAAATTACTGAGATCCTT+CGG | + | chr8_2:20013944-20013963 | None:intergenic | 30.0% | |
| CAGATACATCATCATTAACA+CGG | + | chr8_2:20014117-20014136 | None:intergenic | 30.0% | |
| !!! | TCATAGTATGCTTTTTCATC+TGG | + | chr8_2:20014274-20014293 | None:intergenic | 30.0% |
| CTTCTTTCACTTGGATATGA+AGG | - | chr8_2:20012228-20012247 | Msa1239010:intron | 35.0% | |
| GCTTCTTAAGGCTAAACTAT+TGG | - | chr8_2:20012553-20012572 | Msa1239010:CDS | 35.0% | |
| ATGGAAATATATGAGCTCGT+AGG | - | chr8_2:20012732-20012751 | Msa1239010:CDS | 35.0% | |
| ACTAGAACTTACTGAAAGAC+GGG | + | chr8_2:20012782-20012801 | None:intergenic | 35.0% | |
| ! | GTAAGTTCTAGTACTAGCTT+TGG | - | chr8_2:20012790-20012809 | Msa1239010:CDS | 35.0% |
| !! | TGGCTTTCTAAAACACCATT+TGG | + | chr8_2:20012953-20012972 | None:intergenic | 35.0% |
| TGTAGATCAGAAATCTGAAC+TGG | + | chr8_2:20012973-20012992 | None:intergenic | 35.0% | |
| TTTCTGATCTACATGACCTT+TGG | - | chr8_2:20012980-20012999 | Msa1239010:intron | 35.0% | |
| AAACCATTCTCCTGTATTCA+TGG | + | chr8_2:20013118-20013137 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTGCATTCAAAGA+TGG | + | chr8_2:20013171-20013190 | None:intergenic | 35.0% |
| GTTCTTTACCATTTGCACTT+CGG | + | chr8_2:20013200-20013219 | None:intergenic | 35.0% | |
| AAGTGCAAATGGTAAAGAAC+AGG | - | chr8_2:20013200-20013219 | Msa1239010:CDS | 35.0% | |
| ATTAATTTCTGCTGTGCTAG+TGG | - | chr8_2:20013356-20013375 | Msa1239010:CDS | 35.0% | |
| TTCCAGATTATGAATGTGGA+AGG | - | chr8_2:20013438-20013457 | Msa1239010:CDS | 35.0% | |
| TCCAGATTATGAATGTGGAA+GGG | - | chr8_2:20013439-20013458 | Msa1239010:CDS | 35.0% | |
| AAACTCAAAATAGGCACACT+TGG | - | chr8_2:20013609-20013628 | Msa1239010:CDS | 35.0% | |
| AACTCAAAATAGGCACACTT+GGG | - | chr8_2:20013610-20013629 | Msa1239010:CDS | 35.0% | |
| ! | TTTTAGTAATCCCCAATGGT+GGG | + | chr8_2:20013655-20013674 | None:intergenic | 35.0% |
| !! | AACGTTTTAGTAATCCCCAA+TGG | + | chr8_2:20013659-20013678 | None:intergenic | 35.0% |
| !! | TCTGTTTCTGTAGTATCATG+TGG | - | chr8_2:20013743-20013762 | Msa1239010:CDS | 35.0% |
| !!! | TAGTATGCTTTTTCATCTGG+TGG | + | chr8_2:20014271-20014290 | None:intergenic | 35.0% |
| CTGATGAGGATTTGAATATG+TGG | - | chr8_2:20014329-20014348 | Msa1239010:intron | 35.0% | |
| ! | CTAATTAGGCCACTTTGATT+TGG | - | chr8_2:20014528-20014547 | Msa1239010:CDS | 35.0% |
| ! | CACAACCAACACTTTTACAC+CGG | + | chr8_2:20012169-20012188 | None:intergenic | 40.0% |
| ACTACTACACTCACATTTCG+TGG | - | chr8_2:20012320-20012339 | Msa1239010:CDS | 40.0% | |
| ATATGAGCTCGTAGGCAAAA+TGG | - | chr8_2:20012740-20012759 | Msa1239010:CDS | 40.0% | |
| TATGAGCTCGTAGGCAAAAT+GGG | - | chr8_2:20012741-20012760 | Msa1239010:CDS | 40.0% | |
| ATGACACTCCTTCCATATCA+CGG | - | chr8_2:20012911-20012930 | Msa1239010:intron | 40.0% | |
| GCATCTGTCAGATGTGATTA+TGG | - | chr8_2:20013065-20013084 | Msa1239010:intron | 40.0% | |
| AGATGTGATTATGGCAACCA+AGG | - | chr8_2:20013074-20013093 | Msa1239010:intron | 40.0% | |
| GATGTGATTATGGCAACCAA+GGG | - | chr8_2:20013075-20013094 | Msa1239010:intron | 40.0% | |
| TTCATGGATGGTTGGCATTT+GGG | + | chr8_2:20013102-20013121 | None:intergenic | 40.0% | |
| ATTCATGGATGGTTGGCATT+TGG | + | chr8_2:20013103-20013122 | None:intergenic | 40.0% | |
| CATTCTCCTGTATTCATGGA+TGG | + | chr8_2:20013114-20013133 | None:intergenic | 40.0% | |
| CATCCATGAATACAGGAGAA+TGG | - | chr8_2:20013112-20013131 | Msa1239010:intron | 40.0% | |
| ATAACTCAGTACTCCTGAAC+AGG | - | chr8_2:20013238-20013257 | Msa1239010:CDS | 40.0% | |
| ! | AGCTTTTCCTTTTCCTGTTC+AGG | + | chr8_2:20013254-20013273 | None:intergenic | 40.0% |
| TGAACAGGAAAAGGAAAAGC+TGG | - | chr8_2:20013253-20013272 | Msa1239010:intron | 40.0% | |
| TTGGAAGCTGTTGAAATAGC+AGG | - | chr8_2:20013300-20013319 | Msa1239010:intron | 40.0% | |
| GTTGAAATAGCAGGAATCGA+CGG | - | chr8_2:20013309-20013328 | Msa1239010:intron | 40.0% | |
| ACCCTTCCACATTCATAATC+TGG | + | chr8_2:20013443-20013462 | None:intergenic | 40.0% | |
| ! | ATAGTTTGAGGCACTCTCTT+TGG | + | chr8_2:20013469-20013488 | None:intergenic | 40.0% |
| GAGTGCCTCAAACTATTTAC+AGG | - | chr8_2:20013473-20013492 | Msa1239010:CDS | 40.0% | |
| ! | TGGACATTTTCCACACATGT+CGG | + | chr8_2:20013564-20013583 | None:intergenic | 40.0% |
| TTTACATCAAGCAGTACGCT+TGG | + | chr8_2:20013584-20013603 | None:intergenic | 40.0% | |
| ACTCAAAATAGGCACACTTG+GGG | - | chr8_2:20013611-20013630 | Msa1239010:CDS | 40.0% | |
| !! | GTTTTAGTAATCCCCAATGG+TGG | + | chr8_2:20013656-20013675 | None:intergenic | 40.0% |
| TCTCGGACTAACAAAAGTCA+AGG | - | chr8_2:20013869-20013888 | Msa1239010:intron | 40.0% | |
| ATTACTGAGATCCTTCGGAT+CGG | + | chr8_2:20013939-20013958 | None:intergenic | 40.0% | |
| ! | GAAGTGTCAAGAATATGCAC+AGG | + | chr8_2:20013968-20013987 | None:intergenic | 40.0% |
| !!! | TTCTGCTACTTTTCTTCCCT+TGG | - | chr8_2:20013985-20014004 | Msa1239010:CDS | 40.0% |
| GTTTATAAACCTACCAAGGC+TGG | + | chr8_2:20014095-20014114 | None:intergenic | 40.0% | |
| CACGGTTTATAAACCTACCA+AGG | + | chr8_2:20014099-20014118 | None:intergenic | 40.0% | |
| TGTATCTGAAAAGATCAGCC+AGG | - | chr8_2:20014129-20014148 | Msa1239010:intron | 40.0% | |
| CATCTGCTGTATTCAAAACC+TGG | + | chr8_2:20014150-20014169 | None:intergenic | 40.0% | |
| !!! | CAGGTTTTGAATACAGCAGA+TGG | - | chr8_2:20014148-20014167 | Msa1239010:intron | 40.0% |
| GATGGAGAAGTTTCTAATGC+AGG | - | chr8_2:20014166-20014185 | Msa1239010:intron | 40.0% | |
| !! | ATAGGAAGCACCATGCATAA+TGG | + | chr8_2:20014238-20014257 | None:intergenic | 40.0% |
| AACTCAGCTGTTTACTGATG+AGG | - | chr8_2:20014315-20014334 | Msa1239010:intron | 40.0% | |
| ATGTGGTTATCAACGATTCG+AGG | - | chr8_2:20014346-20014365 | Msa1239010:intron | 40.0% | |
| CACGCGCAATGATATATTAC+TGG | + | chr8_2:20014382-20014401 | None:intergenic | 40.0% | |
| !! | AACACTTTTACACCGGCTAC+TGG | + | chr8_2:20012162-20012181 | None:intergenic | 45.0% |
| ! | AGTAGCCGGTGTAAAAGTGT+TGG | - | chr8_2:20012161-20012180 | Msa1239010:intron | 45.0% |
| !! | CGGTGTAAAAGTGTTGGTTG+TGG | - | chr8_2:20012167-20012186 | Msa1239010:intron | 45.0% |
| GTTGGTTGTGGATGCTAGTT+CGG | - | chr8_2:20012179-20012198 | Msa1239010:intron | 45.0% | |
| TGAGGTTAACCTTGTGCTTG+TGG | - | chr8_2:20012692-20012711 | Msa1239010:CDS | 45.0% | |
| ATTGAACCTCCACAAGCACA+AGG | + | chr8_2:20012704-20012723 | None:intergenic | 45.0% | |
| GGAGGTTCAATTGCCAGATA+TGG | - | chr8_2:20012713-20012732 | Msa1239010:CDS | 45.0% | |
| TGACACTCCTTCCATATCAC+GGG | - | chr8_2:20012912-20012931 | Msa1239010:intron | 45.0% | |
| AAAACCAAGAGCCCGTGATA+TGG | + | chr8_2:20012926-20012945 | None:intergenic | 45.0% | |
| ! | ATATCACGGGCTCTTGGTTT+TGG | - | chr8_2:20012925-20012944 | Msa1239010:intron | 45.0% |
| !!! | CTCTTGGTTTTGGAGCCAAA+TGG | - | chr8_2:20012935-20012954 | Msa1239010:intron | 45.0% |
| TGCCAACCATCCATGAATAC+AGG | - | chr8_2:20013105-20013124 | Msa1239010:intron | 45.0% | |
| CTCCTGTATTCATGGATGGT+TGG | + | chr8_2:20013110-20013129 | None:intergenic | 45.0% | |
| CTCCTGCATTCAAAGATGGT+TGG | + | chr8_2:20013167-20013186 | None:intergenic | 45.0% | |
| AAGACTCTCCGAAGTGCAAA+TGG | - | chr8_2:20013189-20013208 | Msa1239010:intron | 45.0% | |
| CAGTACTCCTGAACAGGAAA+AGG | - | chr8_2:20013244-20013263 | Msa1239010:CDS | 45.0% | |
| TTGTCGTTCTTGTGTGAAGC+TGG | - | chr8_2:20013402-20013421 | Msa1239010:CDS | 45.0% | |
| GGACAACTTGAGCTTTCCAA+GGG | + | chr8_2:20014004-20014023 | None:intergenic | 45.0% | |
| ! | CTTGGAAAGCTCAAGTTGTC+CGG | - | chr8_2:20014003-20014022 | Msa1239010:CDS | 45.0% |
| ! | TTTTGCCTGAAAGGTGACTC+CGG | + | chr8_2:20014025-20014044 | None:intergenic | 45.0% |
| !! | GACAGCTGATTTTGCCTGAA+AGG | + | chr8_2:20014034-20014053 | None:intergenic | 45.0% |
| !! | ACTTTGCTGTTCCAATGGCA+GGG | + | chr8_2:20014056-20014075 | None:intergenic | 45.0% |
| CATGTGCGAACCATTATGCA+TGG | - | chr8_2:20014225-20014244 | Msa1239010:intron | 45.0% | |
| !!! | TTTTCATCTGGTGGTAGTGG+CGG | + | chr8_2:20014262-20014281 | None:intergenic | 45.0% |
| !!! | GCTTTTTCATCTGGTGGTAG+TGG | + | chr8_2:20014265-20014284 | None:intergenic | 45.0% |
| !! | TTAGGCCACTTTGATTTGGC+AGG | - | chr8_2:20014532-20014551 | Msa1239010:CDS | 45.0% |
| CATTGCCTGCCAAATCAAAG+TGG | + | chr8_2:20014540-20014559 | None:intergenic | 45.0% | |
| !!! | ATTTTTTATATTTATATTTC+TGG | - | chr8_2:20012282-20012301 | Msa1239010:CDS | 5.0% |
| GGTTAACCTTGTGCTTGTGG+AGG | - | chr8_2:20012695-20012714 | Msa1239010:CDS | 50.0% | |
| ATCTCAGCGACAAGCATGTG+AGG | + | chr8_2:20012834-20012853 | None:intergenic | 50.0% | |
| AAGCAGTACCTGACTTCGTG+TGG | - | chr8_2:20013043-20013062 | Msa1239010:intron | 50.0% | |
| GGCCAACCATCTTTGAATGC+AGG | - | chr8_2:20013162-20013181 | Msa1239010:intron | 50.0% | |
| ! | GAACCTACGTGCTACTGCAA+TGG | - | chr8_2:20013823-20013842 | Msa1239010:intron | 50.0% |
| GTTCCATTGCAGTAGCACGT+AGG | + | chr8_2:20013829-20013848 | None:intergenic | 50.0% | |
| CGGACAACTTGAGCTTTCCA+AGG | + | chr8_2:20014005-20014024 | None:intergenic | 50.0% | |
| AAATCAGCTGTCCCTGCCAT+TGG | - | chr8_2:20014042-20014061 | Msa1239010:intron | 50.0% | |
| !! | GACTTTGCTGTTCCAATGGC+AGG | + | chr8_2:20014057-20014076 | None:intergenic | 50.0% |
| !! | GCAGGACTTTGCTGTTCCAA+TGG | + | chr8_2:20014061-20014080 | None:intergenic | 50.0% |
| AAACCTACCAAGGCTGGATG+TGG | + | chr8_2:20014089-20014108 | None:intergenic | 50.0% | |
| TCGCACATGTCAAAGCTCAG+CGG | + | chr8_2:20014214-20014233 | None:intergenic | 50.0% | |
| TATATCATTGCGCGTGCGCT+CGG | - | chr8_2:20014386-20014405 | Msa1239010:intron | 50.0% | |
| GTCTGACGAGTTCCAGTCAG+CGG | - | chr8_2:20012113-20012132 | Msa1239010:CDS | 55.0% | |
| AGGTACCATGGTCCAGTAGC+CGG | - | chr8_2:20012147-20012166 | Msa1239010:intron | 55.0% | |
| ! | TTACACCGGCTACTGGACCA+TGG | + | chr8_2:20012155-20012174 | None:intergenic | 55.0% |
| CCAAGAGCCCGTGATATGGA+AGG | + | chr8_2:20012922-20012941 | None:intergenic | 55.0% | |
| CCTTCCATATCACGGGCTCT+TGG | - | chr8_2:20012919-20012938 | Msa1239010:intron | 55.0% | |
| ACCTTTGGCGATTCGCAGTG+TGG | - | chr8_2:20012995-20013014 | Msa1239010:intron | 55.0% | |
| TCCACACTGCGAATCGCCAA+AGG | + | chr8_2:20012999-20013018 | None:intergenic | 55.0% | |
| GACAGATGCCACACGAAGTC+AGG | + | chr8_2:20013054-20013073 | None:intergenic | 55.0% | |
| ! | TGGTTGGCATTTGGGACCCT+TGG | + | chr8_2:20013094-20013113 | None:intergenic | 55.0% |
| ATAGGCACACTTGGGGCAAC+TGG | - | chr8_2:20013618-20013637 | Msa1239010:CDS | 55.0% | |
| TGCTCAAGGCTCCCACCATT+GGG | - | chr8_2:20013641-20013660 | Msa1239010:CDS | 55.0% | |
| AGATCCTTCGGATCGGCATC+TGG | + | chr8_2:20013932-20013951 | None:intergenic | 55.0% | |
| GTTGTCCGGAGTCACCTTTC+AGG | - | chr8_2:20014017-20014036 | Msa1239010:CDS | 55.0% | |
| ACACCACATCCAGCCTTGGT+AGG | - | chr8_2:20014083-20014102 | Msa1239010:intron | 55.0% | |
| ATATCATTGCGCGTGCGCTC+GGG | - | chr8_2:20014387-20014406 | Msa1239010:intron | 55.0% | |
| TGTAGACTCACTCGTGCTCG+CGG | + | chr8_2:20014413-20014432 | None:intergenic | 55.0% | |
| !! | GCGAAGCTGAGGAGGTACCA+TGG | - | chr8_2:20012135-20012154 | Msa1239010:intron | 60.0% |
| CTTGGGGCAACTGGTGCTCA+AGG | - | chr8_2:20013627-20013646 | Msa1239010:CDS | 60.0% | |
| GTGCTCAAGGCTCCCACCAT+TGG | - | chr8_2:20013640-20013659 | Msa1239010:CDS | 60.0% | |
| GCTCAAGGCTCCCACCATTG+GGG | - | chr8_2:20013642-20013661 | Msa1239010:CDS | 60.0% | |
| CGATCCAGATGCCGATCCGA+AGG | - | chr8_2:20013925-20013944 | Msa1239010:CDS | 60.0% | |
| !! | TCTGGTGGTAGTGGCGGCAT+AGG | + | chr8_2:20014256-20014275 | None:intergenic | 60.0% |
| TCCAGTCAGCGGCGAAGCTG+AGG | - | chr8_2:20012124-20012143 | Msa1239010:CDS | 65.0% | |
| TCCTCAGCTTCGCCGCTGAC+TGG | + | chr8_2:20012128-20012147 | None:intergenic | 65.0% | |
| AGTCAGCGGCGAAGCTGAGG+AGG | - | chr8_2:20012127-20012146 | Msa1239010:CDS | 65.0% | |
| AGGCTGGATGTGGTGTGCGC+AGG | + | chr8_2:20014079-20014098 | None:intergenic | 65.0% | |
| GCGCACACCACATCCAGCCT+TGG | - | chr8_2:20014079-20014098 | Msa1239010:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 20012108 | 20014576 | 20012108 | ID=Msa1239010;Name=Msa1239010 |
| chr8_2 | mRNA | 20012108 | 20014576 | 20012108 | ID=Msa1239010-mRNA-1;Parent=Msa1239010;Name=Msa1239010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.83|0.8|0.83|6|0|494 |
| chr8_2 | exon | 20014435 | 20014576 | 20014435 | ID=Msa1239010-mRNA-1:exon:7346;Parent=Msa1239010-mRNA-1 |
| chr8_2 | exon | 20013895 | 20014047 | 20013895 | ID=Msa1239010-mRNA-1:exon:7345;Parent=Msa1239010-mRNA-1 |
| chr8_2 | exon | 20013354 | 20013791 | 20013354 | ID=Msa1239010-mRNA-1:exon:7344;Parent=Msa1239010-mRNA-1 |
| chr8_2 | exon | 20013190 | 20013263 | 20013190 | ID=Msa1239010-mRNA-1:exon:7343;Parent=Msa1239010-mRNA-1 |
| chr8_2 | exon | 20012242 | 20012878 | 20012242 | ID=Msa1239010-mRNA-1:exon:7342;Parent=Msa1239010-mRNA-1 |
| chr8_2 | exon | 20012108 | 20012148 | 20012108 | ID=Msa1239010-mRNA-1:exon:7341;Parent=Msa1239010-mRNA-1 |
| chr8_2 | CDS | 20014435 | 20014576 | 20014435 | ID=Msa1239010-mRNA-1:cds;Parent=Msa1239010-mRNA-1 |
| chr8_2 | CDS | 20013895 | 20014047 | 20013895 | ID=Msa1239010-mRNA-1:cds;Parent=Msa1239010-mRNA-1 |
| chr8_2 | CDS | 20013354 | 20013791 | 20013354 | ID=Msa1239010-mRNA-1:cds;Parent=Msa1239010-mRNA-1 |
| chr8_2 | CDS | 20013190 | 20013263 | 20013190 | ID=Msa1239010-mRNA-1:cds;Parent=Msa1239010-mRNA-1 |
| chr8_2 | CDS | 20012242 | 20012878 | 20012242 | ID=Msa1239010-mRNA-1:cds;Parent=Msa1239010-mRNA-1 |
| chr8_2 | CDS | 20012108 | 20012148 | 20012108 | ID=Msa1239010-mRNA-1:cds;Parent=Msa1239010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
